
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  141 , name T0329TS168_1-D1
# Molecule2: number of CA atoms  141 ( 1070),  selected  141 , name T0329_D1.pdb
# PARAMETERS: T0329TS168_1-D1.T0329_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   141         1 - 239         3.14     3.14
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        13 - 144         1.99     3.52
  LCS_AVERAGE:     21.27

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       114 - 128         0.86     3.51
  LCS_AVERAGE:      7.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  141
LCS_GDT     M       1     M       1      0    5  141     0    0   12   24   41   53   77   93  114  127  132  137  139  141  141  141  141  141  141  141 
LCS_GDT     K       2     K       2      4    5  141     4    8   23   38   68   94  108  118  124  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     Y       3     Y       3      4    9  141     4   18   43   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K       4     K       4      4   12  141     4    4   18   30   50   77  102  113  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A       5     A       5      4   12  141     4    7   16   33   71   94  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A       6     A       6      4   12  141     3    7   16   33   69   96  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I       7     I       7      4   12  141     3    4    8   15   45   70  102  117  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     F       8     F       8      4   12  141     3   10   30   59   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D       9     D       9      4   12  141     3    4   10   17   49   80  103  116  124  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     M      10     M      10      4   12  141     6   16   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D      11     D      11      3   12  141     6   16   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G      12     G      12      3   12  141     3    3    6   12   21   44   88  111  121  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     T      13     T      13      4   40  141     3    5   15   55   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I      14     I      14      4   40  141     3    7   37   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L      15     L      15      4   40  141     5   26   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D      16     D      16      4   40  141     3   10   26   54   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     109     G     109      3   40  141     3    8   20   40   72   92  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     110     P     110      4   40  141     3    7   18   35   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     F     111     F     111      4   40  141     7   20   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     112     P     112      4   40  141     8   14   34   54   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     113     G     113      4   40  141     4    9   21   38   58   74   96  113  124  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     114     I     114     15   40  141    11   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     115     L     115     15   40  141    11   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     116     D     116     15   40  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     117     L     117     15   40  141    11   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     M     118     M     118     15   40  141    11   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     119     K     119     15   40  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     N     120     N     120     15   40  141    11   21   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     121     L     121     15   40  141    10   17   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     R     122     R     122     15   40  141    10   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     Q     123     Q     123     15   40  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     124     K     124     15   40  141    11   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     125     G     125     15   40  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     126     V     126     15   40  141    11   25   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     127     K     127     15   40  141    11   20   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     128     L     128     15   40  141    11   19   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     129     A     129      8   40  141     3   14   36   56   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     130     V     130      8   40  141     3    9   30   55   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     131     V     131      8   40  141     2   13   31   54   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     S     132     S     132      4   40  141     7   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     N     133     N     133      3   40  141     3   14   32   57   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     134     K     134     13   40  141     3    3    8   15   39   55   97  115  124  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     135     P     135     13   40  141     3    9   30   55   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     N     136     N     136     13   40  141     9   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     137     E     137     13   40  141     9   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     138     A     138     13   40  141     9   14   36   61   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     139     V     139     13   40  141     9   14   36   56   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     Q     140     Q     140     13   40  141     9   16   39   61   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     141     V     141     13   40  141     9   11   25   54   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     142     L     142     13   40  141     9   11   15   34   65   88  105  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     143     V     143     13   40  141     9   11   15   43   71   90  108  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     144     E     144     13   40  141     7   11   28   55   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     145     E     145     13   36  141     9   11   13   21   42   71   97  116  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     146     L     146     13   35  141     4   11   12   15   24   45   66   90  113  127  133  135  139  141  141  141  141  141  141  141 
LCS_GDT     F     147     F     147     13   35  141     3    5   17   29   56   81  103  117  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     148     P     148      4   35  141     3   18   39   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     149     G     149      4    6  141     3    4    8   14   27   39   71  100  119  127  131  136  139  141  141  141  141  141  141  141 
LCS_GDT     S     150     S     150      4   23  141     3    9   23   44   77   96  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     F     151     F     151      4   23  141     3    9   21   38   73   94  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     152     D     152      5   23  141     2    6   29   56   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     F     153     F     153      5   23  141     3    6   27   51   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     154     A     154      5   23  141     4   26   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     155     L     155      5   23  141     3    8   32   55   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     156     G     156      5   24  141     2    9   32   57   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     R     163     R     163      4   27  141     2    5   10   45   71   93  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     164     K     164      4   39  141     1    4   11   19   47   78  103  117  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     165     P     165     14   39  141     3   13   36   54   75   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     166     A     166     14   39  141     4    4   18   32   68   94  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     167     P     167     14   39  141     8   25   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     168     D     168     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     M     169     M     169     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     T     170     T     170     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     S     171     S     171     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     172     E     172     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     C     173     C     173     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     174     V     174     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     175     K     175     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     176     V     176     14   39  141    11   21   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     177     L     177     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     178     G     178     14   39  141     8   19   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     179     V     179     12   39  141     3    7   31   54   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     180     P     180     11   39  141     3   11   31   57   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     R     181     R     181      6   39  141     3    5   25   47   78   92  110  118  124  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     182     D     182      6   39  141     3   13   28   57   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     183     K     183      6   39  141     3    8   23   59   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     C     184     C     184      6   39  141     4    9   27   55   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     185     V     185      4   39  141     6   16   43   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     Y     186     Y     186     14   39  141     3    8   28   52   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     187     I     187     14   39  141     4   10   33   57   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     188     G     188     14   39  141     3    6   31   52   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     189     D     189     14   39  141    10   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     S     190     S     190     14   39  141     3   15   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     191     E     191     14   39  141     6   10   31   58   77   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     192     I     192     14   39  141     6   10   31   52   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     193     D     193     14   39  141     7   10   35   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     194     I     194     14   39  141     7   18   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     Q     195     Q     195     14   39  141     7   17   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     T     196     T     196     14   39  141     7   11   43   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     197     A     197     14   39  141     7   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     R     198     R     198     14   39  141    13   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     N     199     N     199     14   39  141     7   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     S     200     S     200     14   39  141     7   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     201     E     201     12   39  141     4   12   38   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     M     202     M     202      6   39  141     4   11   38   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     203     D     203      4   14  141     3    4    5   13   21   38   54   73  104  118  126  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     204     E     204      4    9  141     3    4    5   18   34   45   69   97  115  125  132  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     205     I     205      4    9  141     3    4   12   15   21   29   41   54   76  106  126  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     206     A     206      4    9  141     3    6    8   12   17   27   40   55   91  114  127  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     207     V     207      4    9  141     3    5   10   21   47   66   91  111  121  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     N     208     N     208      4    9  141     3    4    5    8   20   32   54   78  102  117  126  134  138  141  141  141  141  141  141  141 
LCS_GDT     W     209     W     209      3   18  141     3    3   23   33   74   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     210     G     210     10   18  141     3   10   12   21   52   77  104  117  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     F     211     F     211     10   19  141     3   10   13   35   55   77  106  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     R     212     R     212     10   19  141     3   10   29   54   76   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     S     213     S     213     10   20  141     8   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     214     V     214     10   20  141     8   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     P     215     P     215     10   20  141     7   16   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     F     216     F     216     10   20  141     7   15   31   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     217     L     217     10   20  141     7   17   43   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     Q     218     Q     218     10   20  141     8   28   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     219     K     219     10   20  141     7   15   37   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     H     220     H     220      3   20  141     3   18   31   43   69   92  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     221     G     221      4   20  141     3    9   31   59   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     222     A     222     13   20  141     4    9   23   47   77   96  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     T     223     T     223     14   20  141     4   11   26   48   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     224     V     224     14   20  141     4    9   30   55   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     225     I     225     14   20  141     4   16   27   58   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     V     226     V     226     14   20  141     4   16   44   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     D     227     D     227     14   20  141     3   13   43   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     T     228     T     228     14   20  141     3   16   42   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     229     A     229     14   20  141     8   16   39   62   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     230     E     230     14   20  141     8   11   18   39   71   96  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     K     231     K     231     14   20  141     8   11   22   50   74   96  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     L     232     L     232     14   20  141     8   11   24   55   78   97  110  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     233     E     233     14   18  141     8   11   15   30   61   87  106  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     234     E     234     14   18  141     8   11   14   20   61   78  100  116  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     A     235     A     235     14   18  141     8   11   14   25   61   89  106  117  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     I     236     I     236     14   18  141     8   11   14   18   38   56   93  112  125  131  133  136  139  141  141  141  141  141  141  141 
LCS_GDT     L     237     L     237      4   18  141     3    4   16   36   63   88  108  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     G     238     G     238      4   18  141     3    9   20   38   67   90  108  118  125  131  133  137  139  141  141  141  141  141  141  141 
LCS_GDT     E     239     E     239      3    3  141     3    3    3   12   19   27   43   76  115  121  132  137  139  141  141  141  141  141  141  141 
LCS_AVERAGE  LCS_A:  42.76  (   7.01   21.27  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     13     28     44     62     78     97    110    118    125    131    133    137    139    141    141    141    141    141    141    141 
GDT PERCENT_CA   9.22  19.86  31.21  43.97  55.32  68.79  78.01  83.69  88.65  92.91  94.33  97.16  98.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00
GDT RMS_LOCAL    0.33   0.74   1.07   1.37   1.72   1.96   2.18   2.35   2.54   2.68   2.75   3.00   3.04   3.14   3.14   3.14   3.14   3.14   3.14   3.14
GDT RMS_ALL_CA   3.29   3.20   3.19   3.17   3.19   3.16   3.16   3.16   3.17   3.16   3.16   3.14   3.14   3.14   3.14   3.14   3.14   3.14   3.14   3.14

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.086
LGA    K       2      K       2          3.845
LGA    Y       3      Y       3          1.878
LGA    K       4      K       4          5.057
LGA    A       5      A       5          3.415
LGA    A       6      A       6          3.137
LGA    I       7      I       7          4.076
LGA    F       8      F       8          2.805
LGA    D       9      D       9          4.716
LGA    M      10      M      10          2.602
LGA    D      11      D      11          2.767
LGA    G      12      G      12          5.799
LGA    T      13      T      13          3.175
LGA    I      14      I      14          2.218
LGA    L      15      L      15          1.335
LGA    D      16      D      16          2.909
LGA    G     109      G     109          3.245
LGA    P     110      P     110          3.444
LGA    F     111      F     111          1.557
LGA    P     112      P     112          3.557
LGA    G     113      G     113          5.765
LGA    I     114      I     114          1.721
LGA    L     115      L     115          1.125
LGA    D     116      D     116          0.685
LGA    L     117      L     117          1.252
LGA    M     118      M     118          1.180
LGA    K     119      K     119          0.433
LGA    N     120      N     120          1.381
LGA    L     121      L     121          1.998
LGA    R     122      R     122          1.143
LGA    Q     123      Q     123          0.742
LGA    K     124      K     124          1.059
LGA    G     125      G     125          0.481
LGA    V     126      V     126          1.620
LGA    K     127      K     127          1.580
LGA    L     128      L     128          1.629
LGA    A     129      A     129          2.198
LGA    V     130      V     130          2.622
LGA    V     131      V     131          2.665
LGA    S     132      S     132          0.858
LGA    N     133      N     133          1.775
LGA    K     134      K     134          5.380
LGA    P     135      P     135          2.540
LGA    N     136      N     136          1.699
LGA    E     137      E     137          0.926
LGA    A     138      A     138          1.901
LGA    V     139      V     139          2.539
LGA    Q     140      Q     140          2.128
LGA    V     141      V     141          2.576
LGA    L     142      L     142          3.835
LGA    V     143      V     143          3.699
LGA    E     144      E     144          2.683
LGA    E     145      E     145          4.433
LGA    L     146      L     146          6.173
LGA    F     147      F     147          4.367
LGA    P     148      P     148          1.440
LGA    G     149      G     149          6.259
LGA    S     150      S     150          2.970
LGA    F     151      F     151          3.341
LGA    D     152      D     152          2.286
LGA    F     153      F     153          2.378
LGA    A     154      A     154          1.145
LGA    L     155      L     155          2.682
LGA    G     156      G     156          2.607
LGA    R     163      R     163          3.279
LGA    K     164      K     164          4.486
LGA    P     165      P     165          2.641
LGA    A     166      A     166          3.157
LGA    P     167      P     167          1.549
LGA    D     168      D     168          0.820
LGA    M     169      M     169          0.721
LGA    T     170      T     170          0.978
LGA    S     171      S     171          0.806
LGA    E     172      E     172          0.751
LGA    C     173      C     173          0.989
LGA    V     174      V     174          0.794
LGA    K     175      K     175          0.866
LGA    V     176      V     176          1.324
LGA    L     177      L     177          0.852
LGA    G     178      G     178          1.537
LGA    V     179      V     179          3.424
LGA    P     180      P     180          3.335
LGA    R     181      R     181          3.954
LGA    D     182      D     182          3.407
LGA    K     183      K     183          3.044
LGA    C     184      C     184          3.475
LGA    V     185      V     185          2.088
LGA    Y     186      Y     186          2.372
LGA    I     187      I     187          1.793
LGA    G     188      G     188          2.417
LGA    D     189      D     189          0.695
LGA    S     190      S     190          2.369
LGA    E     191      E     191          3.303
LGA    I     192      I     192          3.169
LGA    D     193      D     193          2.321
LGA    I     194      I     194          1.730
LGA    Q     195      Q     195          1.814
LGA    T     196      T     196          1.704
LGA    A     197      A     197          0.723
LGA    R     198      R     198          1.004
LGA    N     199      N     199          0.803
LGA    S     200      S     200          0.710
LGA    E     201      E     201          1.821
LGA    M     202      M     202          2.120
LGA    D     203      D     203          7.832
LGA    E     204      E     204          6.589
LGA    I     205      I     205          8.002
LGA    A     206      A     206          7.543
LGA    V     207      V     207          5.444
LGA    N     208      N     208          7.383
LGA    W     209      W     209          3.042
LGA    G     210      G     210          4.107
LGA    F     211      F     211          3.892
LGA    R     212      R     212          2.633
LGA    S     213      S     213          1.352
LGA    V     214      V     214          1.244
LGA    P     215      P     215          2.033
LGA    F     216      F     216          2.488
LGA    L     217      L     217          1.842
LGA    Q     218      Q     218          1.201
LGA    K     219      K     219          2.428
LGA    H     220      H     220          3.326
LGA    G     221      G     221          2.871
LGA    A     222      A     222          3.672
LGA    T     223      T     223          3.396
LGA    V     224      V     224          3.129
LGA    I     225      I     225          2.964
LGA    V     226      V     226          2.191
LGA    D     227      D     227          1.849
LGA    T     228      T     228          2.631
LGA    A     229      A     229          1.783
LGA    E     230      E     230          3.575
LGA    K     231      K     231          3.536
LGA    L     232      L     232          2.227
LGA    E     233      E     233          3.844
LGA    E     234      E     234          5.006
LGA    A     235      A     235          4.059
LGA    I     236      I     236          4.872
LGA    L     237      L     237          3.702
LGA    G     238      G     238          3.992
LGA    E     239      E     239          7.099

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  141    4.0    118    2.35    61.879    56.735     4.818

LGA_LOCAL      RMSD =  2.349  Number of atoms =  118  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  3.216  Number of atoms =  141 
Std_ALL_ATOMS  RMSD =  3.143  (standard rmsd on all 141 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.180397 * X  +   0.023600 * Y  +   0.983311 * Z  +  -3.045971
  Y_new =  -0.965137 * X  +   0.188509 * Y  +  -0.181588 * Z  +  12.015149
  Z_new =  -0.189648 * X  +  -0.981788 * Y  +  -0.011229 * Z  +  38.098080 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.582233    1.559360  [ DEG:   -90.6553     89.3447 ]
  Theta =   0.190804    2.950789  [ DEG:    10.9322    169.0677 ]
  Phi   =  -1.755578    1.386015  [ DEG:  -100.5872     79.4128 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0329TS168_1-D1                               
REMARK     2: T0329_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0329TS168_1-D1.T0329_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  141   4.0  118   2.35  56.735     3.14
REMARK  ---------------------------------------------------------- 
MOLECULE T0329TS168_1-D1
PFRMAT TS
TARGET T0329
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      22.395  -2.569  28.518  1.00 25.00           C
ATOM      2  CA  LYS     2      20.326  -1.175  31.389  1.00 25.00           C
ATOM      3  CA  TYR     3      18.298   1.161  33.595  1.00 25.00           C
ATOM      4  CA  LYS     4      14.572   0.579  34.324  1.00 25.00           C
ATOM      5  CA  ALA     5      14.336   3.312  36.978  1.00 25.00           C
ATOM      6  CA  ALA     6      10.671   2.847  37.871  1.00 25.00           C
ATOM      7  CA  ILE     7       7.964   5.436  38.161  1.00 25.00           C
ATOM      8  CA  PHE     8       7.150   8.721  39.814  1.00 25.00           C
ATOM      9  CA  ASP     9       5.077  11.890  40.194  1.00 25.00           C
ATOM     10  CA  MET    10       1.462  13.077  40.155  1.00 25.00           C
ATOM     11  CA  ASP    11      -2.275  12.710  40.225  1.00 25.00           C
ATOM     12  CA  GLY    12      -2.027  10.400  37.160  1.00 25.00           C
ATOM     13  CA  THR    13      -0.560   7.734  39.486  1.00 25.00           C
ATOM     14  CA  ILE    14       2.611   7.652  41.663  1.00 25.00           C
ATOM     15  CA  LEU    15       0.353   9.307  44.198  1.00 25.00           C
ATOM     16  CA  ASP    16      -3.265   8.019  43.817  1.00 25.00           C
ATOM    109  CA  GLY   109      -1.562   9.992  53.792  1.00 25.00           C
ATOM    110  CA  PRO   110      -0.871   8.612  50.285  1.00 25.00           C
ATOM    111  CA  PHE   111      -0.320   4.960  49.345  1.00 25.00           C
ATOM    112  CA  PRO   112       1.342   4.440  52.696  1.00 25.00           C
ATOM    113  CA  GLY   113       4.457   5.897  50.957  1.00 25.00           C
ATOM    114  CA  ILE   114       6.644   4.971  47.994  1.00 25.00           C
ATOM    115  CA  LEU   115       9.552   5.879  50.315  1.00 25.00           C
ATOM    116  CA  ASP   116      10.920   2.312  50.036  1.00 25.00           C
ATOM    117  CA  LEU   117      10.673   2.490  46.218  1.00 25.00           C
ATOM    118  CA  MET   118      12.527   5.841  46.230  1.00 25.00           C
ATOM    119  CA  LYS   119      15.266   4.346  48.450  1.00 25.00           C
ATOM    120  CA  ASN   120      15.597   1.361  46.074  1.00 25.00           C
ATOM    121  CA  LEU   121      15.879   3.739  43.085  1.00 25.00           C
ATOM    122  CA  ARG   122      18.586   5.745  44.906  1.00 25.00           C
ATOM    123  CA  GLN   123      20.500   2.517  45.668  1.00 25.00           C
ATOM    124  CA  LYS   124      20.070   0.564  42.428  1.00 25.00           C
ATOM    125  CA  GLY   125      21.843   3.611  40.868  1.00 25.00           C
ATOM    126  CA  VAL   126      19.018   5.291  38.941  1.00 25.00           C
ATOM    127  CA  LYS   127      16.104   7.697  38.688  1.00 25.00           C
ATOM    128  CA  LEU   128      12.494   8.671  39.300  1.00 25.00           C
ATOM    129  CA  ALA   129      11.086  10.007  36.043  1.00 25.00           C
ATOM    130  CA  VAL   130       7.621  11.434  35.539  1.00 25.00           C
ATOM    131  CA  VAL   131       4.702  11.871  33.124  1.00 25.00           C
ATOM    132  CA  SER   132       3.162  14.330  35.540  1.00 25.00           C
ATOM    133  CA  ASN   133      -0.140  13.783  33.634  1.00 25.00           C
ATOM    134  CA  LYS   134       0.511  17.307  32.399  1.00 25.00           C
ATOM    135  CA  PRO   135       0.726  19.389  35.621  1.00 25.00           C
ATOM    136  CA  ASN   136       2.968  22.370  36.547  1.00 25.00           C
ATOM    137  CA  GLU   137       2.928  23.431  40.226  1.00 25.00           C
ATOM    138  CA  ALA   138       1.406  20.057  41.208  1.00 25.00           C
ATOM    139  CA  VAL   139       4.110  18.228  39.206  1.00 25.00           C
ATOM    140  CA  GLN   140       6.828  20.297  40.938  1.00 25.00           C
ATOM    141  CA  VAL   141       5.314  19.468  44.357  1.00 25.00           C
ATOM    142  CA  LEU   142       5.257  15.745  43.456  1.00 25.00           C
ATOM    143  CA  VAL   143       8.925  15.928  42.369  1.00 25.00           C
ATOM    144  CA  GLU   144       9.843  17.646  45.666  1.00 25.00           C
ATOM    145  CA  GLU   145       7.992  14.926  47.627  1.00 25.00           C
ATOM    146  CA  LEU   146       9.852  12.213  45.668  1.00 25.00           C
ATOM    147  CA  PHE   147      13.192  13.934  46.405  1.00 25.00           C
ATOM    148  CA  PRO   148      12.307  14.110  50.127  1.00 25.00           C
ATOM    149  CA  GLY   149      11.409  10.387  50.115  1.00 25.00           C
ATOM    150  CA  SER   150      14.741   9.564  48.416  1.00 25.00           C
ATOM    151  CA  PHE   151      15.061  10.353  44.742  1.00 25.00           C
ATOM    152  CA  ASP   152      15.146  12.455  41.540  1.00 25.00           C
ATOM    153  CA  PHE   153      12.359  13.703  39.326  1.00 25.00           C
ATOM    154  CA  ALA   154       9.558  15.604  37.632  1.00 25.00           C
ATOM    155  CA  LEU   155       9.459  17.688  34.432  1.00 25.00           C
ATOM    156  CA  GLY   156       5.706  18.475  34.321  1.00 25.00           C
ATOM    163  CA  ARG   163      -2.341  17.342  26.261  1.00 25.00           C
ATOM    164  CA  LYS   164      -3.390  14.690  28.777  1.00 25.00           C
ATOM    165  CA  PRO   165      -1.852  12.312  26.283  1.00 25.00           C
ATOM    166  CA  ALA   166       1.544  13.839  26.803  1.00 25.00           C
ATOM    167  CA  PRO   167       4.849  13.374  24.879  1.00 25.00           C
ATOM    168  CA  ASP   168       6.510  16.796  25.331  1.00 25.00           C
ATOM    169  CA  MET   169       6.616  16.271  29.123  1.00 25.00           C
ATOM    170  CA  THR   170       8.195  12.818  28.625  1.00 25.00           C
ATOM    171  CA  SER   171      10.816  14.327  26.277  1.00 25.00           C
ATOM    172  CA  GLU   172      11.604  17.041  28.861  1.00 25.00           C
ATOM    173  CA  CYS   173      11.986  14.374  31.583  1.00 25.00           C
ATOM    174  CA  VAL   174      14.342  12.372  29.324  1.00 25.00           C
ATOM    175  CA  LYS   175      16.419  15.519  28.658  1.00 25.00           C
ATOM    176  CA  VAL   176      16.618  16.214  32.418  1.00 25.00           C
ATOM    177  CA  LEU   177      17.748  12.610  33.050  1.00 25.00           C
ATOM    178  CA  GLY   178      20.654  13.200  30.735  1.00 25.00           C
ATOM    179  CA  VAL   179      21.794   9.831  32.071  1.00 25.00           C
ATOM    180  CA  PRO   180      20.987   7.895  28.880  1.00 25.00           C
ATOM    181  CA  ARG   181      17.872   8.691  26.977  1.00 25.00           C
ATOM    182  CA  ASP   182      16.097   5.319  26.587  1.00 25.00           C
ATOM    183  CA  LYS   183      16.243   4.776  30.375  1.00 25.00           C
ATOM    184  CA  CYS   184      13.978   6.840  32.587  1.00 25.00           C
ATOM    185  CA  VAL   185      11.279   4.233  33.058  1.00 25.00           C
ATOM    186  CA  TYR   186       7.994   2.258  33.165  1.00 25.00           C
ATOM    187  CA  ILE   187       4.726   1.731  35.014  1.00 25.00           C
ATOM    188  CA  GLY   188       0.948   2.148  34.847  1.00 25.00           C
ATOM    189  CA  ASP   189      -2.015   3.970  36.246  1.00 25.00           C
ATOM    190  CA  SER   190      -3.922   6.411  34.122  1.00 25.00           C
ATOM    191  CA  GLU   191      -2.745   6.883  30.537  1.00 25.00           C
ATOM    192  CA  ILE   192      -0.228   9.717  29.988  1.00 25.00           C
ATOM    193  CA  ASP   193       2.646   7.391  30.987  1.00 25.00           C
ATOM    194  CA  ILE   194       1.371   4.727  28.548  1.00 25.00           C
ATOM    195  CA  GLN   195       1.179   7.342  25.755  1.00 25.00           C
ATOM    196  CA  THR   196       4.761   8.460  26.523  1.00 25.00           C
ATOM    197  CA  ALA   197       5.948   4.821  26.408  1.00 25.00           C
ATOM    198  CA  ARG   198       4.194   4.329  23.040  1.00 25.00           C
ATOM    199  CA  ASN   199       5.856   7.502  21.683  1.00 25.00           C
ATOM    200  CA  SER   200       9.098   8.004  23.605  1.00 25.00           C
ATOM    201  CA  GLU   201      10.958   4.722  24.168  1.00 25.00           C
ATOM    202  CA  MET   202      11.022   4.151  27.871  1.00 25.00           C
ATOM    203  CA  ASP   203      10.982   7.878  28.576  1.00 25.00           C
ATOM    204  CA  GLU   204       7.813   6.947  30.536  1.00 25.00           C
ATOM    205  CA  ILE   205       5.854   6.847  33.846  1.00 25.00           C
ATOM    206  CA  ALA   206       3.205   6.291  36.518  1.00 25.00           C
ATOM    207  CA  VAL   207       3.057   3.744  39.335  1.00 25.00           C
ATOM    208  CA  ASN   208       1.642   2.493  42.602  1.00 25.00           C
ATOM    209  CA  TRP   209      -1.192   0.738  40.787  1.00 25.00           C
ATOM    210  CA  GLY   210      -3.080   1.481  44.003  1.00 25.00           C
ATOM    211  CA  PHE   211      -5.485   3.218  41.644  1.00 25.00           C
ATOM    212  CA  ARG   212      -6.545   2.558  38.062  1.00 25.00           C
ATOM    213  CA  SER   213      -8.475  -0.548  36.864  1.00 25.00           C
ATOM    214  CA  VAL   214      -6.558  -3.669  35.841  1.00 25.00           C
ATOM    215  CA  PRO   215      -8.820  -3.683  32.751  1.00 25.00           C
ATOM    216  CA  PHE   216      -7.617  -0.166  31.825  1.00 25.00           C
ATOM    217  CA  LEU   217      -3.974  -1.285  32.211  1.00 25.00           C
ATOM    218  CA  GLN   218      -4.644  -4.323  29.978  1.00 25.00           C
ATOM    219  CA  LYS   219      -6.255  -2.060  27.341  1.00 25.00           C
ATOM    220  CA  HIS   220      -3.241  -2.796  25.122  1.00 25.00           C
ATOM    221  CA  GLY   221      -1.467  -0.154  27.169  1.00 25.00           C
ATOM    222  CA  ALA   222       1.914  -0.282  28.966  1.00 25.00           C
ATOM    223  CA  THR   223       4.076  -3.361  28.397  1.00 25.00           C
ATOM    224  CA  VAL   224       4.723  -3.138  32.128  1.00 25.00           C
ATOM    225  CA  ILE   225       1.475  -2.742  33.940  1.00 25.00           C
ATOM    226  CA  VAL   226       1.640  -3.811  37.573  1.00 25.00           C
ATOM    227  CA  ASP   227      -0.531  -4.620  40.542  1.00 25.00           C
ATOM    228  CA  THR   228       1.230  -2.854  43.495  1.00 25.00           C
ATOM    229  CA  ALA   229       3.940  -2.472  46.092  1.00 25.00           C
ATOM    230  CA  GLU   230       4.597  -6.156  46.904  1.00 25.00           C
ATOM    231  CA  LYS   231       3.392  -7.168  43.413  1.00 25.00           C
ATOM    232  CA  LEU   232       5.696  -4.548  41.832  1.00 25.00           C
ATOM    233  CA  GLU   233       8.645  -5.864  43.892  1.00 25.00           C
ATOM    234  CA  GLU   234       7.859  -9.442  42.777  1.00 25.00           C
ATOM    235  CA  ALA   235       7.726  -8.301  39.123  1.00 25.00           C
ATOM    236  CA  ILE   236      11.102  -6.536  39.527  1.00 25.00           C
ATOM    237  CA  LEU   237      14.185  -7.894  37.887  1.00 25.00           C
ATOM    238  CA  GLY   238      11.757 -10.267  36.074  1.00 25.00           C
ATOM    239  CA  GLU   239       9.943  -7.637  34.001  1.00 25.00           C
TER
END
