
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  141 , name T0329TS168_2-D1
# Molecule2: number of CA atoms  141 ( 1070),  selected  141 , name T0329_D1.pdb
# PARAMETERS: T0329TS168_2-D1.T0329_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   139         1 - 237         4.74     5.59
  LCS_AVERAGE:     97.96

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45       163 - 207         1.95     5.96
  LCS_AVERAGE:     17.19

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       166 - 179         0.80     6.43
  LCS_AVERAGE:      5.72

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  141
LCS_GDT     M       1     M       1      3    3  139     0    4    4    8    9   13   17   61   74  100  109  118  124  127  128  131  131  132  135  136 
LCS_GDT     K       2     K       2      3    4  139     3    3    3    7    9   20   32   59   82   92  105  113  121  127  128  131  131  132  135  136 
LCS_GDT     Y       3     Y       3      3    7  139     3    3    3    9   19   41   70   84  101  108  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K       4     K       4      4    7  139     3    7   29   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A       5     A       5      4    7  139     3    4   17   48   64   84   90   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A       6     A       6      4    7  139     3    4    5    9   15   27   55   69   86  102  113  121  124  127  128  131  131  132  135  136 
LCS_GDT     I       7     I       7      4    7  139     3    4    6    8   15   23   35   69   86  102  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     F       8     F       8      4    7  139     3    4    6    8    9   13   28   35   54   73   90  114  124  127  128  131  131  132  135  136 
LCS_GDT     D       9     D       9      4    7  139     3    4    6    8   13   24   35   59   83  105  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     M      10     M      10      4    7  139     3    8   12   16   26   39   60   80   95  106  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D      11     D      11      4    7  139     5    7   12   14   23   32   60   75   93  106  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G      12     G      12      4    7  139     3    4    8   18   32   63   80   94  104  109  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     T      13     T      13      4    6  139     4   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I      14     I      14      4   18  139     4   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L      15     L      15      4   18  139     4    9   35   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D      16     D      16      4   18  139     5   14   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     109     G     109      3   21  139     1    7    9   23   54   71   91   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     110     P     110      3   21  139     4    4   10   13   34   62   88   98  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     F     111     F     111     13   21  139     4   12   17   26   64   76   90   99  105  109  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     112     P     112     13   21  139     4    8   17   20   53   72   88   96  104  109  114  121  124  126  128  131  131  132  135  136 
LCS_GDT     G     113     G     113     13   21  139     8   14   34   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I     114     I     114     13   21  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     115     L     115     13   21  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     116     D     116     13   21  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     117     L     117     13   21  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     M     118     M     118     13   21  139    10   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     119     K     119     13   21  139    10   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     N     120     N     120     13   21  139    10   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     121     L     121     13   21  139    10   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     R     122     R     122     13   21  139    10   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     Q     123     Q     123     13   21  139    10   25   35   52   70   83   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     124     K     124      4   21  139     4   11   29   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     125     G     125      4   21  139     3   13   34   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     126     V     126      4   21  139     8   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     127     K     127      4   21  139     3    4   11   35   53   71   88   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     128     L     128      4   21  139     2    4   18   49   63   80   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A     129     A     129      4   21  139     3   10   17   33   60   77   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     130     V     130      5   21  139     6   21   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     131     V     131      5   21  139     3    6   11   19   31   41   81   99  105  110  114  121  124  127  128  131  131  132  135  136 
LCS_GDT     S     132     S     132      5   12  139     3    6   11   19   40   58   87   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     N     133     N     133      5   12  139     3    5   15   25   47   75   90   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     134     K     134      5   15  139     3   21   34   49   69   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     135     P     135      3   15  139     6   14   32   49   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     N     136     N     136     12   15  139    10   11   12   14   24   66   86   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     137     E     137     12   15  139    10   11   17   41   65   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A     138     A     138     12   15  139    10   11   18   45   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     139     V     139     12   15  139    10   12   32   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     Q     140     Q     140     12   15  139    10   15   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     141     V     141     12   15  139    10   11   24   52   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     142     L     142     12   15  139    10   11   12   49   70   83   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     143     V     143     12   15  139    10   11   15   40   58   78   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     144     E     144     12   15  139    10   11   12   29   60   77   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     145     E     145     12   15  139    10   11   12   14   15   26   66   86   97  109  114  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     146     L     146     12   15  139     5   11   12   14   15   17   22   40   67   94  112  119  123  127  128  131  131  132  135  136 
LCS_GDT     F     147     F     147     12   15  139     3    5   12   19   33   52   66   90  100  107  114  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     148     P     148      4   15  139     3    4   10   28   61   77   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     149     G     149      4    5  139     3    7   14   22   28   40   61   83  100  110  114  119  122  127  128  131  131  132  135  136 
LCS_GDT     S     150     S     150      4    8  139     3    7   12   42   61   77   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     F     151     F     151      4    8  139     3    7   14   24   39   62   81   97  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     152     D     152      4    8  139     3    4    7    8    9   10   17   25   31   38   54   65   87  104  113  122  129  132  135  136 
LCS_GDT     F     153     F     153      4    8  139     3    4    7    8    9   14   17   25   31   36   49   55   62   83  103  114  126  129  133  136 
LCS_GDT     A     154     A     154      4    8  139     3    4    6    7   15   26   29   39   45   61   74   89  110  122  127  129  131  132  135  136 
LCS_GDT     L     155     L     155      4    8  139     3    4    8    8   12   28   32   45   58   89  105  115  120  123  128  131  131  132  135  136 
LCS_GDT     G     156     G     156      4   44  139     3    4    6   15   22   30   51   79   92  105  114  119  123  126  128  131  131  132  135  136 
LCS_GDT     R     163     R     163      3   45  139     3   12   23   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     164     K     164     10   45  139     8   17   34   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     165     P     165     13   45  139     3   19   35   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A     166     A     166     14   45  139     6   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     167     P     167     14   45  139     3   20   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     168     D     168     14   45  139     9   20   36   55   70   83   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     M     169     M     169     14   45  139     9   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     T     170     T     170     14   45  139     9   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     S     171     S     171     14   45  139     9   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     172     E     172     14   45  139     9   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     C     173     C     173     14   45  139     9   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     174     V     174     14   45  139     9   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     175     K     175     14   45  139     9   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     176     V     176     14   45  139     9   19   29   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     177     L     177     14   45  139     9   19   30   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     178     G     178     14   45  139     3   14   27   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     179     V     179     14   45  139     3   13   29   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     180     P     180     13   45  139     4   12   21   48   69   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     R     181     R     181      7   45  139     4    8   13   20   54   72   90   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     182     D     182      7   45  139     3    9   27   53   67   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     183     K     183      7   45  139     3   10   33   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     C     184     C     184      7   45  139     3    6   14   33   62   81   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     185     V     185      7   45  139     6   19   28   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     Y     186     Y     186      7   45  139     7   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I     187     I     187      7   45  139     3    6   33   51   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     188     G     188      4   45  139     4   10   29   52   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     189     D     189     12   45  139     3    7   23   41   69   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     S     190     S     190     12   45  139     8   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     191     E     191     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I     192     I     192     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     193     D     193     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I     194     I     194     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     Q     195     Q     195     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     T     196     T     196     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A     197     A     197     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     R     198     R     198     12   45  139    11   25   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     N     199     N     199     12   45  139    10   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     S     200     S     200     12   45  139    10   24   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     201     E     201     12   45  139     3    7   15   49   65   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     M     202     M     202      4   45  139     3   10   28   53   69   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     203     D     203      6   45  139     3   11   29   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     204     E     204      6   45  139     3    9   26   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I     205     I     205      6   45  139     3   10   27   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A     206     A     206      6   45  139     3    7   17   40   64   84   90   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     207     V     207      6   45  139     3    5    8   22   40   66   83   95  105  109  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     N     208     N     208      6   20  139     3    4    8   19   32   53   64   83  100  107  112  120  124  126  128  131  131  132  135  136 
LCS_GDT     W     209     W     209      4   17  139     3    3    7   13   33   49   83   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     210     G     210      4   17  139     3   14   19   39   68   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     F     211     F     211      4   17  139     3    4    7   26   47   73   90   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     R     212     R     212      8   17  139     3   10   31   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     S     213     S     213      8   17  139     7   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     214     V     214      8   17  139     7   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     P     215     P     215      8   17  139     7   13   29   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     F     216     F     216      8   17  139     7   19   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     217     L     217      8   17  139     7   13   32   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     Q     218     Q     218      8   17  139     7   13   28   53   69   84   92   99  105  110  114  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     219     K     219      8   17  139     7   12   28   53   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     H     220     H     220      8   17  139     3   15   32   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     G     221     G     221      4   17  139     4   11   33   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     A     222     A     222      4   17  139     3   10   25   50   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     T     223     T     223      4   17  139     3   10   29   52   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     224     V     224      4   17  139     3    7   20   41   65   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     I     225     I     225      4   17  139     3    8   25   50   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     V     226     V     226      4   15  139     3    8   18   42   60   80   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     D     227     D     227      4    8  139     3   11   16   27   43   56   80   96  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     T     228     T     228      4    5  139     3    7   14   22   27   34   45   59   79   95  104  115  120  127  128  131  131  132  135  136 
LCS_GDT     A     229     A     229      8    9  139     8    8   11   20   26   33   38   54   67   85   99  112  120  127  128  131  131  132  135  136 
LCS_GDT     E     230     E     230      8    9  139     8    8   13   24   31   55   74   88  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     K     231     K     231      8    9  139     8   13   36   55   70   84   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     L     232     L     232      8    9  139     8    8   17   46   62   80   92   99  105  110  115  121  124  127  128  131  131  132  135  136 
LCS_GDT     E     233     E     233      8    9  139     8    8    9    9   11   14   30   45   60   73   85  100  115  121  125  126  130  132  135  136 
LCS_GDT     E     234     E     234      8    9  139     8    8    9    9   15   20   32   59   61   80  102  110  116  120  125  127  129  132  135  136 
LCS_GDT     A     235     A     235      8    9  139     8    8    9    9   11   16   23   29   33   44   59   79   98  112  118  123  127  130  132  134 
LCS_GDT     I     236     I     236      8    9  139     8    8    9    9   11   13   17   25   31   36   43   53   57   79   82   86   93  119  126  131 
LCS_GDT     L     237     L     237      3    9  139     3    3    4    5   11   12   13   15   17   23   31   37   43   46   51   66   76   78   84   87 
LCS_GDT     G     238     G     238      3    4  134     0    3    3    4    4    7   11   14   16   21   24   27   34   43   44   54   57   63   74   80 
LCS_GDT     E     239     E     239      0    4   20     0    0    3    4    4    4   10   14   16   21   24   26   32   36   41   51   56   63   74   80 
LCS_AVERAGE  LCS_A:  40.29  (   5.72   17.19   97.96 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     25     36     55     70     84     92     99    105    110    115    121    124    127    128    131    131    132    135    136 
GDT PERCENT_CA   7.80  17.73  25.53  39.01  49.65  59.57  65.25  70.21  74.47  78.01  81.56  85.82  87.94  90.07  90.78  92.91  92.91  93.62  95.74  96.45
GDT RMS_LOCAL    0.30   0.72   1.06   1.45   1.73   2.02   2.18   2.32   2.51   2.72   2.98   3.14   3.31   3.56   3.50   3.68   3.68   3.76   4.04   4.15
GDT RMS_ALL_CA   6.09   5.80   5.65   5.62   5.63   5.66   5.61   5.63   5.63   5.65   5.65   5.66   5.70   5.74   5.69   5.73   5.73   5.73   5.67   5.66

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.542
LGA    K       2      K       2          9.229
LGA    Y       3      Y       3          6.695
LGA    K       4      K       4          2.836
LGA    A       5      A       5          3.881
LGA    A       6      A       6          7.094
LGA    I       7      I       7          6.911
LGA    F       8      F       8          8.153
LGA    D       9      D       9          6.805
LGA    M      10      M      10          5.806
LGA    D      11      D      11          5.872
LGA    G      12      G      12          4.818
LGA    T      13      T      13          1.707
LGA    I      14      I      14          1.409
LGA    L      15      L      15          1.958
LGA    D      16      D      16          1.382
LGA    G     109      G     109          3.462
LGA    P     110      P     110          4.930
LGA    F     111      F     111          3.981
LGA    P     112      P     112          4.691
LGA    G     113      G     113          2.592
LGA    I     114      I     114          1.270
LGA    L     115      L     115          0.680
LGA    D     116      D     116          0.767
LGA    L     117      L     117          1.388
LGA    M     118      M     118          1.336
LGA    K     119      K     119          1.340
LGA    N     120      N     120          1.864
LGA    L     121      L     121          2.064
LGA    R     122      R     122          1.951
LGA    Q     123      Q     123          2.445
LGA    K     124      K     124          2.067
LGA    G     125      G     125          1.485
LGA    V     126      V     126          1.787
LGA    K     127      K     127          4.361
LGA    L     128      L     128          3.231
LGA    A     129      A     129          3.570
LGA    V     130      V     130          1.207
LGA    V     131      V     131          5.306
LGA    S     132      S     132          4.904
LGA    N     133      N     133          4.524
LGA    K     134      K     134          2.636
LGA    P     135      P     135          2.514
LGA    N     136      N     136          4.728
LGA    E     137      E     137          3.744
LGA    A     138      A     138          2.980
LGA    V     139      V     139          1.631
LGA    Q     140      Q     140          0.819
LGA    V     141      V     141          2.300
LGA    L     142      L     142          2.537
LGA    V     143      V     143          3.215
LGA    E     144      E     144          3.567
LGA    E     145      E     145          5.754
LGA    L     146      L     146          7.263
LGA    F     147      F     147          5.800
LGA    P     148      P     148          3.989
LGA    G     149      G     149          6.684
LGA    S     150      S     150          3.890
LGA    F     151      F     151          5.102
LGA    D     152      D     152         10.747
LGA    F     153      F     153         11.580
LGA    A     154      A     154          9.479
LGA    L     155      L     155          7.416
LGA    G     156      G     156          5.827
LGA    R     163      R     163          2.360
LGA    K     164      K     164          1.515
LGA    P     165      P     165          1.802
LGA    A     166      A     166          1.886
LGA    P     167      P     167          1.892
LGA    D     168      D     168          2.142
LGA    M     169      M     169          1.889
LGA    T     170      T     170          1.505
LGA    S     171      S     171          1.253
LGA    E     172      E     172          1.290
LGA    C     173      C     173          1.050
LGA    V     174      V     174          0.742
LGA    K     175      K     175          0.782
LGA    V     176      V     176          1.917
LGA    L     177      L     177          1.743
LGA    G     178      G     178          3.109
LGA    V     179      V     179          2.843
LGA    P     180      P     180          3.237
LGA    R     181      R     181          4.468
LGA    D     182      D     182          3.401
LGA    K     183      K     183          1.949
LGA    C     184      C     184          3.364
LGA    V     185      V     185          2.140
LGA    Y     186      Y     186          1.083
LGA    I     187      I     187          2.458
LGA    G     188      G     188          2.215
LGA    D     189      D     189          3.150
LGA    S     190      S     190          1.633
LGA    E     191      E     191          2.020
LGA    I     192      I     192          1.581
LGA    D     193      D     193          1.305
LGA    I     194      I     194          1.205
LGA    Q     195      Q     195          0.631
LGA    T     196      T     196          0.555
LGA    A     197      A     197          0.940
LGA    R     198      R     198          1.297
LGA    N     199      N     199          1.449
LGA    S     200      S     200          1.377
LGA    E     201      E     201          3.205
LGA    M     202      M     202          2.844
LGA    D     203      D     203          1.741
LGA    E     204      E     204          2.092
LGA    I     205      I     205          2.270
LGA    A     206      A     206          3.618
LGA    V     207      V     207          5.064
LGA    N     208      N     208          6.272
LGA    W     209      W     209          4.922
LGA    G     210      G     210          3.297
LGA    F     211      F     211          3.959
LGA    R     212      R     212          1.474
LGA    S     213      S     213          1.553
LGA    V     214      V     214          1.983
LGA    P     215      P     215          1.749
LGA    F     216      F     216          0.940
LGA    L     217      L     217          1.867
LGA    Q     218      Q     218          2.637
LGA    K     219      K     219          2.385
LGA    H     220      H     220          1.588
LGA    G     221      G     221          1.865
LGA    A     222      A     222          2.736
LGA    T     223      T     223          2.201
LGA    V     224      V     224          3.429
LGA    I     225      I     225          2.629
LGA    V     226      V     226          3.695
LGA    D     227      D     227          6.102
LGA    T     228      T     228          9.235
LGA    A     229      A     229          9.492
LGA    E     230      E     230          6.636
LGA    K     231      K     231          1.261
LGA    L     232      L     232          3.467
LGA    E     233      E     233          9.938
LGA    E     234      E     234          9.860
LGA    A     235      A     235         11.526
LGA    I     236      I     236         15.204
LGA    L     237      L     237         20.141
LGA    G     238      G     238         24.250
LGA    E     239      E     239         26.866

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  141    4.0     99    2.32    54.965    49.077     4.085

LGA_LOCAL      RMSD =  2.324  Number of atoms =   99  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.627  Number of atoms =  141 
Std_ALL_ATOMS  RMSD =  5.559  (standard rmsd on all 141 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.914432 * X  +  -0.154719 * Y  +   0.374000 * Z  +  -3.692107
  Y_new =  -0.224110 * X  +  -0.575909 * Y  +  -0.786195 * Z  +  10.569479
  Z_new =   0.337030 * X  +  -0.802739 * Y  +   0.491956 * Z  +  37.379921 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.020985    2.120608  [ DEG:   -58.4981    121.5019 ]
  Theta =  -0.343760   -2.797832  [ DEG:   -19.6960   -160.3040 ]
  Phi   =  -2.901249    0.240343  [ DEG:  -166.2293     13.7707 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0329TS168_2-D1                               
REMARK     2: T0329_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0329TS168_2-D1.T0329_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  141   4.0   99   2.32  49.077     5.56
REMARK  ---------------------------------------------------------- 
MOLECULE T0329TS168_2-D1
PFRMAT TS
TARGET T0329
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      27.276   1.630  30.749  1.00 25.00           C
ATOM      2  CA  LYS     2      24.161   3.036  32.442  1.00 25.00           C
ATOM      3  CA  TYR     3      21.057   4.947  31.547  1.00 25.00           C
ATOM      4  CA  LYS     4      18.960   5.897  34.555  1.00 25.00           C
ATOM      5  CA  ALA     5      17.181   8.878  36.107  1.00 25.00           C
ATOM      6  CA  ALA     6      14.872  11.241  38.015  1.00 25.00           C
ATOM      7  CA  ILE     7      12.669  13.824  36.338  1.00 25.00           C
ATOM      8  CA  PHE     8       9.166  15.042  35.499  1.00 25.00           C
ATOM      9  CA  ASP     9       5.493  15.400  36.264  1.00 25.00           C
ATOM     10  CA  MET    10       2.272  13.636  35.341  1.00 25.00           C
ATOM     11  CA  ASP    11      -0.608  11.226  34.962  1.00 25.00           C
ATOM     12  CA  GLY    12      -0.814   9.842  38.538  1.00 25.00           C
ATOM     13  CA  THR    13       0.745   6.537  39.777  1.00 25.00           C
ATOM     14  CA  ILE    14       3.348   7.465  42.448  1.00 25.00           C
ATOM     15  CA  LEU    15       0.598   9.817  43.712  1.00 25.00           C
ATOM     16  CA  ASP    16      -1.886   8.836  46.392  1.00 25.00           C
ATOM    109  CA  GLY   109      -1.397  10.437  54.109  1.00 25.00           C
ATOM    110  CA  PRO   110      -1.833   7.265  52.030  1.00 25.00           C
ATOM    111  CA  PHE   111       1.809   7.161  50.985  1.00 25.00           C
ATOM    112  CA  PRO   112       3.293   4.987  53.755  1.00 25.00           C
ATOM    113  CA  GLY   113       4.627   2.214  51.441  1.00 25.00           C
ATOM    114  CA  ILE   114       5.545   4.107  48.230  1.00 25.00           C
ATOM    115  CA  LEU   115       8.695   5.678  49.738  1.00 25.00           C
ATOM    116  CA  ASP   116      10.072   2.198  50.549  1.00 25.00           C
ATOM    117  CA  LEU   117       9.371   1.057  46.962  1.00 25.00           C
ATOM    118  CA  MET   118      11.163   4.155  45.599  1.00 25.00           C
ATOM    119  CA  LYS   119      14.169   3.442  47.863  1.00 25.00           C
ATOM    120  CA  ASN   120      14.258  -0.187  46.643  1.00 25.00           C
ATOM    121  CA  LEU   121      14.147   1.007  43.005  1.00 25.00           C
ATOM    122  CA  ARG   122      17.023   3.444  43.692  1.00 25.00           C
ATOM    123  CA  GLN   123      19.061   0.624  45.293  1.00 25.00           C
ATOM    124  CA  LYS   124      22.009   1.755  43.155  1.00 25.00           C
ATOM    125  CA  GLY   125      20.926   3.558  39.939  1.00 25.00           C
ATOM    126  CA  VAL   126      17.478   2.340  38.893  1.00 25.00           C
ATOM    127  CA  LYS   127      14.417   4.592  39.192  1.00 25.00           C
ATOM    128  CA  LEU   128      12.352   6.982  37.126  1.00 25.00           C
ATOM    129  CA  ALA   129       9.712   9.156  35.555  1.00 25.00           C
ATOM    130  CA  VAL   130       8.885  11.334  38.545  1.00 25.00           C
ATOM    131  CA  VAL   131       5.356  11.481  39.863  1.00 25.00           C
ATOM    132  CA  SER   132       2.202  13.601  40.441  1.00 25.00           C
ATOM    133  CA  ASN   133      -0.856  14.827  38.471  1.00 25.00           C
ATOM    134  CA  LYS   134       1.207  17.828  37.369  1.00 25.00           C
ATOM    135  CA  PRO   135       1.513  21.573  38.122  1.00 25.00           C
ATOM    136  CA  ASN   136       0.231  23.221  41.310  1.00 25.00           C
ATOM    137  CA  GLU   137       2.021  23.541  44.681  1.00 25.00           C
ATOM    138  CA  ALA   138       0.718  20.096  45.728  1.00 25.00           C
ATOM    139  CA  VAL   139       1.945  18.599  42.424  1.00 25.00           C
ATOM    140  CA  GLN   140       5.388  20.191  42.953  1.00 25.00           C
ATOM    141  CA  VAL   141       5.530  18.762  46.503  1.00 25.00           C
ATOM    142  CA  LEU   142       4.603  15.294  45.171  1.00 25.00           C
ATOM    143  CA  VAL   143       7.348  15.554  42.514  1.00 25.00           C
ATOM    144  CA  GLU   144       9.887  16.559  45.199  1.00 25.00           C
ATOM    145  CA  GLU   145       8.825  13.576  47.354  1.00 25.00           C
ATOM    146  CA  LEU   146       9.220  11.234  44.350  1.00 25.00           C
ATOM    147  CA  PHE   147      12.710  12.657  43.669  1.00 25.00           C
ATOM    148  CA  PRO   148      13.668  12.132  47.340  1.00 25.00           C
ATOM    149  CA  GLY   149      12.411   8.519  47.176  1.00 25.00           C
ATOM    150  CA  SER   150      14.455   7.925  43.992  1.00 25.00           C
ATOM    151  CA  PHE   151      11.307   7.989  41.909  1.00 25.00           C
ATOM    152  CA  ASP   152       8.110   6.663  40.215  1.00 25.00           C
ATOM    153  CA  PHE   153       5.595   6.860  37.377  1.00 25.00           C
ATOM    154  CA  ALA   154       4.143   9.481  35.025  1.00 25.00           C
ATOM    155  CA  LEU   155       5.884  11.696  32.395  1.00 25.00           C
ATOM    156  CA  GLY   156       4.209  14.944  31.313  1.00 25.00           C
ATOM    163  CA  ARG   163      -2.012  17.565  28.179  1.00 25.00           C
ATOM    164  CA  LYS   164      -0.396  14.158  28.565  1.00 25.00           C
ATOM    165  CA  PRO   165       0.215  12.821  25.016  1.00 25.00           C
ATOM    166  CA  ALA   166       3.105  12.602  22.492  1.00 25.00           C
ATOM    167  CA  PRO   167       6.275  11.176  23.955  1.00 25.00           C
ATOM    168  CA  ASP   168       7.501  14.804  23.995  1.00 25.00           C
ATOM    169  CA  MET   169       6.971  14.967  27.785  1.00 25.00           C
ATOM    170  CA  THR   170       8.929  11.705  28.224  1.00 25.00           C
ATOM    171  CA  SER   171      11.778  13.098  26.076  1.00 25.00           C
ATOM    172  CA  GLU   172      11.830  16.300  28.178  1.00 25.00           C
ATOM    173  CA  CYS   173      11.963  14.218  31.390  1.00 25.00           C
ATOM    174  CA  VAL   174      14.865  12.163  29.968  1.00 25.00           C
ATOM    175  CA  LYS   175      16.724  15.381  29.045  1.00 25.00           C
ATOM    176  CA  VAL   176      16.176  16.741  32.582  1.00 25.00           C
ATOM    177  CA  LEU   177      17.507  13.474  34.071  1.00 25.00           C
ATOM    178  CA  GLY   178      20.831  14.109  32.276  1.00 25.00           C
ATOM    179  CA  VAL   179      20.141  10.856  30.497  1.00 25.00           C
ATOM    180  CA  PRO   180      18.346   9.490  27.455  1.00 25.00           C
ATOM    181  CA  ARG   181      16.482   7.362  30.021  1.00 25.00           C
ATOM    182  CA  ASP   182      17.286   4.272  27.905  1.00 25.00           C
ATOM    183  CA  LYS   183      15.820   2.001  30.618  1.00 25.00           C
ATOM    184  CA  CYS   184      14.187   3.236  33.862  1.00 25.00           C
ATOM    185  CA  VAL   185      10.415   3.808  33.528  1.00 25.00           C
ATOM    186  CA  TYR   186       7.054   5.360  32.637  1.00 25.00           C
ATOM    187  CA  ILE   187       3.653   3.991  33.707  1.00 25.00           C
ATOM    188  CA  GLY   188       0.549   2.455  35.415  1.00 25.00           C
ATOM    189  CA  ASP   189      -0.706   6.060  35.255  1.00 25.00           C
ATOM    190  CA  SER   190      -3.716   5.958  32.900  1.00 25.00           C
ATOM    191  CA  GLU   191      -4.413   6.082  29.163  1.00 25.00           C
ATOM    192  CA  ILE   192      -2.122   9.105  28.634  1.00 25.00           C
ATOM    193  CA  ASP   193       0.667   7.367  30.601  1.00 25.00           C
ATOM    194  CA  ILE   194       0.230   4.210  28.476  1.00 25.00           C
ATOM    195  CA  GLN   195       0.417   6.308  25.277  1.00 25.00           C
ATOM    196  CA  THR   196       3.611   7.999  26.543  1.00 25.00           C
ATOM    197  CA  ALA   197       5.139   4.577  27.332  1.00 25.00           C
ATOM    198  CA  ARG   198       4.237   3.337  23.822  1.00 25.00           C
ATOM    199  CA  ASN   199       5.846   6.453  22.282  1.00 25.00           C
ATOM    200  CA  SER   200       9.109   6.935  24.176  1.00 25.00           C
ATOM    201  CA  GLU   201      12.494   5.348  24.682  1.00 25.00           C
ATOM    202  CA  MET   202      11.980   4.189  28.221  1.00 25.00           C
ATOM    203  CA  ASP   203      10.628   0.712  27.265  1.00 25.00           C
ATOM    204  CA  GLU   204       8.189   0.869  30.125  1.00 25.00           C
ATOM    205  CA  ILE   205       7.052  -0.077  33.625  1.00 25.00           C
ATOM    206  CA  ALA   206       4.490  -0.299  36.448  1.00 25.00           C
ATOM    207  CA  VAL   207       4.135   2.364  39.045  1.00 25.00           C
ATOM    208  CA  ASN   208       1.450   1.538  41.574  1.00 25.00           C
ATOM    209  CA  TRP   209       0.020  -1.276  39.492  1.00 25.00           C
ATOM    210  CA  GLY   210      -3.322   0.165  40.702  1.00 25.00           C
ATOM    211  CA  PHE   211      -3.756   3.180  38.443  1.00 25.00           C
ATOM    212  CA  ARG   212      -7.054   1.849  37.093  1.00 25.00           C
ATOM    213  CA  SER   213      -9.409  -1.019  37.627  1.00 25.00           C
ATOM    214  CA  VAL   214      -6.782  -3.582  36.831  1.00 25.00           C
ATOM    215  CA  PRO   215      -8.206  -5.343  33.742  1.00 25.00           C
ATOM    216  CA  PHE   216      -8.677  -1.963  32.002  1.00 25.00           C
ATOM    217  CA  LEU   217      -5.065  -1.003  32.838  1.00 25.00           C
ATOM    218  CA  GLN   218      -3.825  -4.342  31.431  1.00 25.00           C
ATOM    219  CA  LYS   219      -5.842  -3.769  28.227  1.00 25.00           C
ATOM    220  CA  HIS   220      -5.653  -1.695  25.046  1.00 25.00           C
ATOM    221  CA  GLY   221      -1.969  -0.761  25.135  1.00 25.00           C
ATOM    222  CA  ALA   222       0.809  -2.863  26.688  1.00 25.00           C
ATOM    223  CA  THR   223       3.221  -5.681  27.215  1.00 25.00           C
ATOM    224  CA  VAL   224       4.457  -3.636  30.161  1.00 25.00           C
ATOM    225  CA  ILE   225       2.063  -4.798  32.932  1.00 25.00           C
ATOM    226  CA  VAL   226      -0.180  -5.014  36.050  1.00 25.00           C
ATOM    227  CA  ASP   227       0.540  -8.632  36.973  1.00 25.00           C
ATOM    228  CA  THR   228       3.973 -10.151  37.565  1.00 25.00           C
ATOM    229  CA  ALA   229       7.169  -8.246  38.202  1.00 25.00           C
ATOM    230  CA  GLU   230       7.096 -10.189  41.501  1.00 25.00           C
ATOM    231  CA  LYS   231       7.420  -6.916  43.464  1.00 25.00           C
ATOM    232  CA  LEU   232       4.546  -5.392  41.444  1.00 25.00           C
ATOM    233  CA  GLU   233       2.385  -8.475  42.143  1.00 25.00           C
ATOM    234  CA  GLU   234       3.175  -8.211  45.882  1.00 25.00           C
ATOM    235  CA  ALA   235       2.227  -4.501  45.845  1.00 25.00           C
ATOM    236  CA  ILE   236      -1.069  -5.335  44.081  1.00 25.00           C
ATOM    237  CA  LEU   237      -2.741  -3.862  47.152  1.00 25.00           C
ATOM    238  CA  GLY   238      -6.134  -2.252  47.747  1.00 25.00           C
ATOM    239  CA  GLU   239      -9.544  -0.950  46.679  1.00 25.00           C
TER
END
