
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  141 , name T0329TS168_3-D1
# Molecule2: number of CA atoms  141 ( 1070),  selected  141 , name T0329_D1.pdb
# PARAMETERS: T0329TS168_3-D1.T0329_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 238         4.66     5.05
  LCS_AVERAGE:     98.70

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        13 - 132         1.93     5.86
  LONGEST_CONTINUOUS_SEGMENT:    28        14 - 133         1.99     5.68
  LCS_AVERAGE:     11.51

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       110 - 123         0.98     6.56
  LCS_AVERAGE:      5.42

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  141
LCS_GDT     M       1     M       1      3   11  140     0    3   11   33   47   69   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K       2     K       2      3   11  140     3   11   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     Y       3     Y       3      3   11  140     4   12   28   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K       4     K       4      3   11  140     1    5   16   30   47   69   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A       5     A       5      5   11  140     4   15   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A       6     A       6      5   11  140     3   13   27   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     I       7     I       7      5   11  140     3    7   14   31   57   76   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     F       8     F       8      5   11  140     3    7   12   18   45   76   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D       9     D       9      5   11  140     3    8   22   38   57   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     M      10     M      10      6   11  140     3   11   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D      11     D      11      6   11  140     0    5   10   16   32   59   84  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G      12     G      12      6   11  140     4    6   17   29   42   63   85  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     T      13     T      13      6   28  140     4   11   27   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     I      14     I      14      6   28  140     4   19   31   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L      15     L      15      6   28  140     4   12   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D      16     D      16      4   28  140     3   11   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     109     G     109      3   28  140     3    3    4   27   51   73   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     110     P     110     14   28  140     8   19   28   40   60   78   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     F     111     F     111     14   28  140     3   16   27   40   59   77   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     112     P     112     14   28  140     3   10   15   23   38   61   83   99  114  124  126  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     113     G     113     14   28  140     8   19   28   40   60   79   91  108  117  124  126  129  130  132  133  135  135  136  136  136 
LCS_GDT     I     114     I     114     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     115     L     115     14   28  140    10   15   31   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     116     D     116     14   28  140    10   21   31   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     117     L     117     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     M     118     M     118     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     119     K     119     14   28  140    10   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     N     120     N     120     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     121     L     121     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     R     122     R     122     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     Q     123     Q     123     14   28  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     124     K     124     12   28  140     3   10   19   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     125     G     125      5   28  140     3   11   30   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     126     V     126      5   28  140     4   19   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     127     K     127      5   28  140     3   15   26   41   59   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     128     L     128      5   28  140     3   15   26   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     129     A     129      3   28  140     4    9   24   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     130     V     130      3   28  140     3    8   25   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     131     V     131      3   28  140     3    8   23   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     S     132     S     132      3   28  140     3    6   25   39   55   78   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     N     133     N     133      6   28  140     3    8   18   38   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     134     K     134      6   26  140     3    6   13   22   47   70   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     135     P     135     12   23  140     3    4   21   36   55   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     N     136     N     136     12   17  140     9   11   17   37   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     137     E     137     12   17  140     9   11   22   37   52   76   90  107  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     138     A     138     12   17  140     9   11   21   37   50   76   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     139     V     139     12   17  140     9   12   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     Q     140     Q     140     12   17  140     9   12   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     141     V     141     12   17  140     9   11   20   35   49   67   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     142     L     142     12   17  140     9   11   13   18   37   54   74  100  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     143     V     143     12   17  140     9   11   13   22   38   65   88  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     144     E     144     12   17  140     7   11   20   35   49   72   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     145     E     145     12   17  140     9   11   13   17   24   41   62   77   93  112  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     146     L     146     12   17  140     4   11   12   17   17   23   30   42   59   75   95  113  127  131  133  135  135  136  136  136 
LCS_GDT     F     147     F     147     12   17  140     3    6   13   17   20   28   51   70  101  118  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     148     P     148      4   17  140     3    8   21   35   49   68   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     149     G     149      4    6  140     3    4   11   28   45   67   88  104  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     S     150     S     150      4    6  140     3    4   13   22   39   62   83  105  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     F     151     F     151      4    6  140     3    6   13   35   49   69   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     152     D     152      5   20  140     3   15   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     F     153     F     153      5   20  140     3    4   17   31   50   76   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     154     A     154      5   20  140     3   15   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     155     L     155      5   20  140     3   10   28   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     156     G     156      5   20  140     4   13   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     R     163     R     163      4   20  140     0    4    9   29   51   78   89  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     164     K     164      4   20  140     3    4   19   30   49   71   88  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     165     P     165      4   20  140     3    8   12   32   42   69   88  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     166     A     166      4   20  140     3    4    5    9   35   54   86  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     167     P     167     12   20  140     6   21   28   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     168     D     168     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     M     169     M     169     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     T     170     T     170     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     S     171     S     171     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     172     E     172     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     C     173     C     173     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     174     V     174     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     175     K     175     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     176     V     176     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     177     L     177     12   20  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     178     G     178     12   17  140     4    7   19   40   61   79   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     179     V     179      6   16  140     5    7   19   40   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     180     P     180      6   16  140     5    8   22   39   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     R     181     R     181      6   16  140     5    5    7   13   34   67   87  104  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     182     D     182      7   16  140     5    7   15   29   38   69   87  104  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     183     K     183      7   16  140     5    5   13   28   37   65   87  104  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     C     184     C     184      7   16  140     3    6   19   39   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     185     V     185      7   16  140     3   10   19   38   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     Y     186     Y     186      7   16  140     3    7   19   40   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     I     187     I     187      7   16  140     3    8   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     188     G     188      7   16  140     3   11   19   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     189     D     189      5   16  140     3    5   10   27   38   56   79   92  113  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     S     190     S     190     10   16  140     3   10   19   40   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     191     E     191     10   16  140     9   10   19   30   50   71   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     I     192     I     192     10   16  140     9   10   17   26   54   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     193     D     193     10   13  140     9   19   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     I     194     I     194     10   13  140     9   10   19   41   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     Q     195     Q     195     10   13  140     9   10   19   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     T     196     T     196     10   13  140     9   10   11   43   57   78   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     197     A     197     10   13  140     9   10   10   30   54   72   89  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     R     198     R     198     10   13  140     9   10   27   43   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     N     199     N     199     10   13  140     9   10   16   43   59   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     S     200     S     200      4   11  140     3    9   30   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     201     E     201      4    9  140     3    4    8   12   33   72   88  104  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     M     202     M     202      4    9  140     3   13   30   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     203     D     203      6    9  140     4   19   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     204     E     204      6    9  140     4   16   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     I     205     I     205      6    9  140     4    6   17   33   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     206     A     206      6    9  140     4    5    7   21   46   70   88  106  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     207     V     207      6    9  140     4    5    7   16   38   72   87  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     N     208     N     208      6    9  140     3    5    7   16   30   52   73  101  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     W     209     W     209      3    8  140     3    3   12   23   50   76   90  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     G     210     G     210      4    8  140     3    4    8   17   37   57   87  105  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     F     211     F     211      4    7  140     3    9   21   37   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     R     212     R     212      4    7  140     3    8   27   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     S     213     S     213      4    7  140     2   11   27   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     214     V     214      7    8  140     6   11   19   30   53   71   89  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     P     215     P     215      7    8  140     6    6   19   38   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     F     216     F     216      7    8  140     6    6   10   18   50   76   88  105  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     217     L     217      7    8  140     6   11   22   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     Q     218     Q     218      7    8  140     6    6   17   43   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     219     K     219      7    8  140     6    6   11   20   41   63   87  103  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     H     220     H     220      7    8  140     3    4    7   11   22   46   58   88   97  110  122  128  130  132  133  135  135  136  136  136 
LCS_GDT     G     221     G     221      3    8  140     3    9   26   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     A     222     A     222      3    7  140     3    6   17   33   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     T     223     T     223      3    7  140     3    3    4    8   15   42   76   96  116  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     224     V     224      3    7  140     3    3    4    5   11   36   64   80  109  119  126  128  130  132  133  135  135  136  136  136 
LCS_GDT     I     225     I     225      3    7  140     3    5   20   40   60   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     V     226     V     226      4    7  140     3   19   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     D     227     D     227      4    7  140     3    4   15   27   39   58   74   92  109  122  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     T     228     T     228      4    9  140     3    4    5   11   17   24   48   60   71   90  102  111  122  130  132  135  135  136  136  136 
LCS_GDT     A     229     A     229      8    9  140     8    8    8    9   23   43   60   72   88  102  120  127  130  132  133  135  135  136  136  136 
LCS_GDT     E     230     E     230      8    9  140     8    8   19   27   49   62   81  104  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     K     231     K     231      8    9  140     8    8    8   23   42   72   87  105  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     L     232     L     232      8    9  140    16   21   31   44   61   79   91  108  117  124  127  129  130  132  133  135  135  136  136  136 
LCS_GDT     E     233     E     233      8    9  140     8    8    8   14   23   43   64   85   99  117  123  128  130  132  133  135  135  136  136  136 
LCS_GDT     E     234     E     234      8    9  140     8    8    8   14   30   39   63   86  101  116  122  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     235     A     235      8    9  140     8    8    8    9   12   14   27   32   47   64   76   88  109  119  126  129  133  134  135  136 
LCS_GDT     I     236     I     236      8    9  140     8    8    8    9   10   11   11   26   27   31   42   58   69   93   95  107  115  126  132  133 
LCS_GDT     L     237     L     237      3    9  140     3    3    4    5    9   11   11   15   17   26   27   30   48   61   74   85   94  101  104  112 
LCS_GDT     G     238     G     238      3    4  140     0    3    4    5    7    9   10   15   17   19   24   27   32   38   52   70   80   86   92  100 
LCS_GDT     E     239     E     239      3    4   23     0    3    4    5    6    7    9    9   17   18   24   27   30   33   39   54   70   77   86   94 
LCS_AVERAGE  LCS_A:  38.54  (   5.42   11.51   98.70 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     21     31     44     61     79     91    108    117    124    127    129    130    132    133    135    135    136    136    136 
GDT PERCENT_CA  11.35  14.89  21.99  31.21  43.26  56.03  64.54  76.60  82.98  87.94  90.07  91.49  92.20  93.62  94.33  95.74  95.74  96.45  96.45  96.45
GDT RMS_LOCAL    0.31   0.48   0.97   1.57   1.83   2.10   2.38   2.71   2.89   3.06   3.21   3.24   3.28   3.38   3.41   3.59   3.55   3.64   3.64   3.64
GDT RMS_ALL_CA   5.31   5.32   5.34   5.14   5.16   5.14   5.09   5.07   5.10   5.13   5.16   5.14   5.13   5.13   5.11   5.17   5.13   5.15   5.15   5.15

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.864
LGA    K       2      K       2          1.009
LGA    Y       3      Y       3          2.468
LGA    K       4      K       4          3.753
LGA    A       5      A       5          0.846
LGA    A       6      A       6          1.712
LGA    I       7      I       7          3.672
LGA    F       8      F       8          3.646
LGA    D       9      D       9          2.916
LGA    M      10      M      10          1.220
LGA    D      11      D      11          3.976
LGA    G      12      G      12          3.996
LGA    T      13      T      13          2.803
LGA    I      14      I      14          2.942
LGA    L      15      L      15          1.493
LGA    D      16      D      16          1.680
LGA    G     109      G     109          2.968
LGA    P     110      P     110          3.351
LGA    F     111      F     111          2.930
LGA    P     112      P     112          4.742
LGA    G     113      G     113          3.340
LGA    I     114      I     114          2.541
LGA    L     115      L     115          2.766
LGA    D     116      D     116          2.983
LGA    L     117      L     117          2.472
LGA    M     118      M     118          2.397
LGA    K     119      K     119          2.549
LGA    N     120      N     120          2.523
LGA    L     121      L     121          2.310
LGA    R     122      R     122          2.254
LGA    Q     123      Q     123          2.426
LGA    K     124      K     124          2.769
LGA    G     125      G     125          1.015
LGA    V     126      V     126          0.866
LGA    K     127      K     127          3.097
LGA    L     128      L     128          2.920
LGA    A     129      A     129          2.525
LGA    V     130      V     130          2.435
LGA    V     131      V     131          2.810
LGA    S     132      S     132          3.818
LGA    N     133      N     133          2.318
LGA    K     134      K     134          3.528
LGA    P     135      P     135          3.074
LGA    N     136      N     136          3.090
LGA    E     137      E     137          4.121
LGA    A     138      A     138          3.754
LGA    V     139      V     139          1.340
LGA    Q     140      Q     140          0.995
LGA    V     141      V     141          3.948
LGA    L     142      L     142          4.979
LGA    V     143      V     143          3.982
LGA    E     144      E     144          3.338
LGA    E     145      E     145          6.945
LGA    L     146      L     146          8.998
LGA    F     147      F     147          6.847
LGA    P     148      P     148          3.781
LGA    G     149      G     149          4.971
LGA    S     150      S     150          4.359
LGA    F     151      F     151          3.535
LGA    D     152      D     152          1.900
LGA    F     153      F     153          3.878
LGA    A     154      A     154          1.597
LGA    L     155      L     155          2.893
LGA    G     156      G     156          1.355
LGA    R     163      R     163          3.901
LGA    K     164      K     164          3.685
LGA    P     165      P     165          3.760
LGA    A     166      A     166          3.982
LGA    P     167      P     167          2.022
LGA    D     168      D     168          1.523
LGA    M     169      M     169          1.557
LGA    T     170      T     170          1.817
LGA    S     171      S     171          1.663
LGA    E     172      E     172          1.649
LGA    C     173      C     173          1.854
LGA    V     174      V     174          1.729
LGA    K     175      K     175          1.641
LGA    V     176      V     176          2.133
LGA    L     177      L     177          1.852
LGA    G     178      G     178          3.692
LGA    V     179      V     179          3.044
LGA    P     180      P     180          3.430
LGA    R     181      R     181          5.225
LGA    D     182      D     182          4.912
LGA    K     183      K     183          4.614
LGA    C     184      C     184          2.809
LGA    V     185      V     185          2.724
LGA    Y     186      Y     186          2.566
LGA    I     187      I     187          1.523
LGA    G     188      G     188          1.920
LGA    D     189      D     189          4.867
LGA    S     190      S     190          2.532
LGA    E     191      E     191          3.313
LGA    I     192      I     192          2.786
LGA    D     193      D     193          2.162
LGA    I     194      I     194          2.300
LGA    Q     195      Q     195          2.008
LGA    T     196      T     196          3.556
LGA    A     197      A     197          3.958
LGA    R     198      R     198          1.654
LGA    N     199      N     199          3.294
LGA    S     200      S     200          1.089
LGA    E     201      E     201          4.344
LGA    M     202      M     202          1.935
LGA    D     203      D     203          1.276
LGA    E     204      E     204          1.308
LGA    I     205      I     205          2.787
LGA    A     206      A     206          4.091
LGA    V     207      V     207          3.933
LGA    N     208      N     208          4.961
LGA    W     209      W     209          3.932
LGA    G     210      G     210          4.541
LGA    F     211      F     211          2.656
LGA    R     212      R     212          2.683
LGA    S     213      S     213          2.475
LGA    V     214      V     214          3.930
LGA    P     215      P     215          3.248
LGA    F     216      F     216          5.192
LGA    L     217      L     217          2.303
LGA    Q     218      Q     218          2.607
LGA    K     219      K     219          5.795
LGA    H     220      H     220          7.938
LGA    G     221      G     221          1.606
LGA    A     222      A     222          3.289
LGA    T     223      T     223          4.567
LGA    V     224      V     224          5.805
LGA    I     225      I     225          2.163
LGA    V     226      V     226          1.587
LGA    D     227      D     227          7.095
LGA    T     228      T     228         10.554
LGA    A     229      A     229          8.447
LGA    E     230      E     230          5.410
LGA    K     231      K     231          4.375
LGA    L     232      L     232          1.884
LGA    E     233      E     233          6.621
LGA    E     234      E     234          7.230
LGA    A     235      A     235         11.101
LGA    I     236      I     236         14.054
LGA    L     237      L     237         19.583
LGA    G     238      G     238         23.264
LGA    E     239      E     239         24.254

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  141    4.0    108    2.71    54.610    48.077     3.841

LGA_LOCAL      RMSD =  2.712  Number of atoms =  108  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.100  Number of atoms =  141 
Std_ALL_ATOMS  RMSD =  5.041  (standard rmsd on all 141 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.351386 * X  +  -0.182655 * Y  +   0.918240 * Z  +  -2.767296
  Y_new =   0.045850 * X  +  -0.976250 * Y  +  -0.211740 * Z  +  10.810566
  Z_new =   0.935107 * X  +   0.116504 * Y  +  -0.334665 * Z  +  38.590073 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.806593   -0.334999  [ DEG:   160.8060    -19.1940 ]
  Theta =  -1.208562   -1.933030  [ DEG:   -69.2455   -110.7545 ]
  Phi   =   0.129751   -3.011842  [ DEG:     7.4342   -172.5658 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0329TS168_3-D1                               
REMARK     2: T0329_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0329TS168_3-D1.T0329_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  141   4.0  108   2.71  48.077     5.04
REMARK  ---------------------------------------------------------- 
MOLECULE T0329TS168_3-D1
PFRMAT TS
TARGET T0329
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      20.264  -6.336  33.025  1.00 25.00           C
ATOM      2  CA  LYS     2      18.172  -3.299  32.054  1.00 25.00           C
ATOM      3  CA  TYR     3      15.051  -1.626  33.540  1.00 25.00           C
ATOM      4  CA  LYS     4      16.285   1.716  32.167  1.00 25.00           C
ATOM      5  CA  ALA     5      15.744   4.682  34.483  1.00 25.00           C
ATOM      6  CA  ALA     6      12.559   3.187  35.800  1.00 25.00           C
ATOM      7  CA  ILE     7       9.017   4.237  36.537  1.00 25.00           C
ATOM      8  CA  PHE     8       7.046   4.784  39.747  1.00 25.00           C
ATOM      9  CA  ASP     9       4.004   6.824  38.718  1.00 25.00           C
ATOM     10  CA  MET    10       3.140  10.122  40.293  1.00 25.00           C
ATOM     11  CA  ASP    11       0.813  12.514  42.205  1.00 25.00           C
ATOM     12  CA  GLY    12      -1.847  10.227  40.668  1.00 25.00           C
ATOM     13  CA  THR    13      -1.446   6.480  39.890  1.00 25.00           C
ATOM     14  CA  ILE    14       1.121   5.088  42.283  1.00 25.00           C
ATOM     15  CA  LEU    15       1.378   8.042  44.754  1.00 25.00           C
ATOM     16  CA  ASP    16      -2.151   6.950  45.787  1.00 25.00           C
ATOM    109  CA  GLY   109       0.847  11.262  53.582  1.00 25.00           C
ATOM    110  CA  PRO   110       0.205  10.116  50.005  1.00 25.00           C
ATOM    111  CA  PHE   111       0.068   6.362  50.381  1.00 25.00           C
ATOM    112  CA  PRO   112       2.371   5.506  53.350  1.00 25.00           C
ATOM    113  CA  GLY   113       3.452   2.673  51.064  1.00 25.00           C
ATOM    114  CA  ILE   114       4.072   4.418  47.738  1.00 25.00           C
ATOM    115  CA  LEU   115       6.698   6.715  49.317  1.00 25.00           C
ATOM    116  CA  ASP   116       8.450   3.685  50.869  1.00 25.00           C
ATOM    117  CA  LEU   117       8.454   1.915  47.471  1.00 25.00           C
ATOM    118  CA  MET   118       9.938   5.036  45.821  1.00 25.00           C
ATOM    119  CA  LYS   119      12.658   5.197  48.512  1.00 25.00           C
ATOM    120  CA  ASN   120      13.467   1.496  47.950  1.00 25.00           C
ATOM    121  CA  LEU   121      13.704   2.097  44.175  1.00 25.00           C
ATOM    122  CA  ARG   122      16.051   5.064  44.769  1.00 25.00           C
ATOM    123  CA  GLN   123      18.237   2.909  47.059  1.00 25.00           C
ATOM    124  CA  LYS   124      21.073   2.582  44.469  1.00 25.00           C
ATOM    125  CA  GLY   125      21.876   4.259  41.142  1.00 25.00           C
ATOM    126  CA  VAL   126      18.262   4.041  40.035  1.00 25.00           C
ATOM    127  CA  LYS   127      15.066   5.939  39.292  1.00 25.00           C
ATOM    128  CA  LEU   128      11.550   7.105  40.100  1.00 25.00           C
ATOM    129  CA  ALA   129      11.041   8.806  36.761  1.00 25.00           C
ATOM    130  CA  VAL   130       7.601   9.635  38.183  1.00 25.00           C
ATOM    131  CA  VAL   131       5.030  10.711  35.634  1.00 25.00           C
ATOM    132  CA  SER   132       2.082  10.823  33.158  1.00 25.00           C
ATOM    133  CA  ASN   133       1.381  14.549  33.139  1.00 25.00           C
ATOM    134  CA  LYS   134       1.186  14.453  36.975  1.00 25.00           C
ATOM    135  CA  PRO   135       0.507  18.006  38.278  1.00 25.00           C
ATOM    136  CA  ASN   136       0.940  21.197  40.241  1.00 25.00           C
ATOM    137  CA  GLU   137       1.520  21.059  44.024  1.00 25.00           C
ATOM    138  CA  ALA   138       1.268  17.238  43.949  1.00 25.00           C
ATOM    139  CA  VAL   139       3.788  17.104  41.068  1.00 25.00           C
ATOM    140  CA  GLN   140       6.177  19.373  43.020  1.00 25.00           C
ATOM    141  CA  VAL   141       5.840  17.121  46.100  1.00 25.00           C
ATOM    142  CA  LEU   142       6.580  14.037  43.954  1.00 25.00           C
ATOM    143  CA  VAL   143       9.673  15.762  42.496  1.00 25.00           C
ATOM    144  CA  GLU   144      10.871  16.649  46.024  1.00 25.00           C
ATOM    145  CA  GLU   145      10.374  13.018  47.132  1.00 25.00           C
ATOM    146  CA  LEU   146      12.361  11.793  44.096  1.00 25.00           C
ATOM    147  CA  PHE   147      15.181  14.252  44.918  1.00 25.00           C
ATOM    148  CA  PRO   148      15.227  13.024  48.546  1.00 25.00           C
ATOM    149  CA  GLY   149      15.404   9.393  47.340  1.00 25.00           C
ATOM    150  CA  SER   150      18.309  10.284  45.008  1.00 25.00           C
ATOM    151  CA  PHE   151      16.574  10.422  41.594  1.00 25.00           C
ATOM    152  CA  ASP   152      14.740  12.758  39.271  1.00 25.00           C
ATOM    153  CA  PHE   153      10.954  12.703  39.333  1.00 25.00           C
ATOM    154  CA  ALA   154       8.994  15.402  37.470  1.00 25.00           C
ATOM    155  CA  LEU   155       5.828  15.638  35.317  1.00 25.00           C
ATOM    156  CA  GLY   156       4.701  19.274  35.738  1.00 25.00           C
ATOM    163  CA  ARG   163       0.786  16.283  24.408  1.00 25.00           C
ATOM    164  CA  LYS   164       0.020  17.003  28.033  1.00 25.00           C
ATOM    165  CA  PRO   165      -1.629  13.624  28.052  1.00 25.00           C
ATOM    166  CA  ALA   166       1.982  12.410  27.488  1.00 25.00           C
ATOM    167  CA  PRO   167       4.404  12.257  24.614  1.00 25.00           C
ATOM    168  CA  ASP   168       6.160  15.659  24.708  1.00 25.00           C
ATOM    169  CA  MET   169       6.023  15.651  28.535  1.00 25.00           C
ATOM    170  CA  THR   170       7.501  12.119  28.605  1.00 25.00           C
ATOM    171  CA  SER   171      10.310  13.220  26.247  1.00 25.00           C
ATOM    172  CA  GLU   172      11.042  16.237  28.489  1.00 25.00           C
ATOM    173  CA  CYS   173      11.165  13.955  31.562  1.00 25.00           C
ATOM    174  CA  VAL   174      13.575  11.597  29.747  1.00 25.00           C
ATOM    175  CA  LYS   175      15.802  14.565  28.798  1.00 25.00           C
ATOM    176  CA  VAL   176      15.803  15.759  32.436  1.00 25.00           C
ATOM    177  CA  LEU   177      16.762  12.244  33.615  1.00 25.00           C
ATOM    178  CA  GLY   178      20.319  13.565  33.411  1.00 25.00           C
ATOM    179  CA  VAL   179      21.013  10.203  31.735  1.00 25.00           C
ATOM    180  CA  PRO   180      20.626   9.039  28.206  1.00 25.00           C
ATOM    181  CA  ARG   181      17.757  10.439  26.184  1.00 25.00           C
ATOM    182  CA  ASP   182      16.297   6.934  25.692  1.00 25.00           C
ATOM    183  CA  LYS   183      15.943   6.523  29.483  1.00 25.00           C
ATOM    184  CA  CYS   184      12.618   6.223  31.260  1.00 25.00           C
ATOM    185  CA  VAL   185       9.153   4.583  31.345  1.00 25.00           C
ATOM    186  CA  TYR   186       6.465   6.690  32.992  1.00 25.00           C
ATOM    187  CA  ILE   187       4.396   3.753  34.240  1.00 25.00           C
ATOM    188  CA  GLY   188       1.352   5.918  34.559  1.00 25.00           C
ATOM    189  CA  ASP   189      -1.713   8.025  35.084  1.00 25.00           C
ATOM    190  CA  SER   190      -3.797   6.718  32.185  1.00 25.00           C
ATOM    191  CA  GLU   191      -3.232   7.250  28.464  1.00 25.00           C
ATOM    192  CA  ILE   192       0.234   7.816  29.993  1.00 25.00           C
ATOM    193  CA  ASP   193       0.933   4.052  29.859  1.00 25.00           C
ATOM    194  CA  ILE   194      -0.148   3.957  26.186  1.00 25.00           C
ATOM    195  CA  GLN   195       2.155   6.916  25.406  1.00 25.00           C
ATOM    196  CA  THR   196       5.064   5.147  27.160  1.00 25.00           C
ATOM    197  CA  ALA   197       4.377   1.966  25.141  1.00 25.00           C
ATOM    198  CA  ARG   198       4.335   4.003  21.898  1.00 25.00           C
ATOM    199  CA  ASN   199       7.662   5.639  22.854  1.00 25.00           C
ATOM    200  CA  SER   200       8.502   8.693  24.980  1.00 25.00           C
ATOM    201  CA  GLU   201      11.250   6.615  26.452  1.00 25.00           C
ATOM    202  CA  MET   202      11.790   2.959  27.313  1.00 25.00           C
ATOM    203  CA  ASP   203       9.972  -0.423  27.407  1.00 25.00           C
ATOM    204  CA  GLU   204       7.271  -0.016  30.116  1.00 25.00           C
ATOM    205  CA  ILE   205       7.603  -0.093  33.904  1.00 25.00           C
ATOM    206  CA  ALA   206       4.990  -0.733  36.590  1.00 25.00           C
ATOM    207  CA  VAL   207       3.161   1.815  38.688  1.00 25.00           C
ATOM    208  CA  ASN   208       0.936   0.028  41.189  1.00 25.00           C
ATOM    209  CA  TRP   209      -2.054  -1.000  39.076  1.00 25.00           C
ATOM    210  CA  GLY   210      -1.683   2.266  37.188  1.00 25.00           C
ATOM    211  CA  PHE   211      -5.227   3.260  38.110  1.00 25.00           C
ATOM    212  CA  ARG   212      -6.304  -0.091  36.557  1.00 25.00           C
ATOM    213  CA  SER   213      -7.448  -3.648  35.846  1.00 25.00           C
ATOM    214  CA  VAL   214      -8.095  -2.247  32.357  1.00 25.00           C
ATOM    215  CA  PRO   215      -8.270  -4.752  29.466  1.00 25.00           C
ATOM    216  CA  PHE   216      -5.577  -2.794  27.573  1.00 25.00           C
ATOM    217  CA  LEU   217      -3.354  -2.788  30.691  1.00 25.00           C
ATOM    218  CA  GLN   218      -3.836  -6.569  31.071  1.00 25.00           C
ATOM    219  CA  LYS   219      -2.909  -7.082  27.390  1.00 25.00           C
ATOM    220  CA  HIS   220       0.437  -5.934  26.047  1.00 25.00           C
ATOM    221  CA  GLY   221      -0.725  -2.285  26.129  1.00 25.00           C
ATOM    222  CA  ALA   222       2.407  -1.807  28.235  1.00 25.00           C
ATOM    223  CA  THR   223       2.874  -2.567  31.922  1.00 25.00           C
ATOM    224  CA  VAL   224       0.470  -1.508  34.585  1.00 25.00           C
ATOM    225  CA  ILE   225       1.287  -4.229  37.093  1.00 25.00           C
ATOM    226  CA  VAL   226       1.945  -6.807  39.759  1.00 25.00           C
ATOM    227  CA  ASP   227       4.419  -9.204  38.007  1.00 25.00           C
ATOM    228  CA  THR   228       7.279  -7.860  35.946  1.00 25.00           C
ATOM    229  CA  ALA   229       8.341  -4.763  37.772  1.00 25.00           C
ATOM    230  CA  GLU   230       9.994  -6.188  40.918  1.00 25.00           C
ATOM    231  CA  LYS   231       9.128  -2.996  42.850  1.00 25.00           C
ATOM    232  CA  LEU   232       5.497  -3.232  41.658  1.00 25.00           C
ATOM    233  CA  GLU   233       5.344  -6.894  42.768  1.00 25.00           C
ATOM    234  CA  GLU   234       6.750  -5.939  46.200  1.00 25.00           C
ATOM    235  CA  ALA   235       4.134  -3.160  46.524  1.00 25.00           C
ATOM    236  CA  ILE   236       1.358  -5.633  45.606  1.00 25.00           C
ATOM    237  CA  LEU   237      -1.694  -5.237  47.917  1.00 25.00           C
ATOM    238  CA  GLY   238      -5.125  -3.563  47.968  1.00 25.00           C
ATOM    239  CA  GLU   239      -6.359  -0.228  46.488  1.00 25.00           C
TER
END
