
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  141 , name T0329TS168_4-D1
# Molecule2: number of CA atoms  141 ( 1070),  selected  141 , name T0329_D1.pdb
# PARAMETERS: T0329TS168_4-D1.T0329_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   141         1 - 239         4.86     4.86
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41       165 - 205         1.91     4.97
  LCS_AVERAGE:     17.55

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       165 - 178         0.94     8.14
  LCS_AVERAGE:      5.59

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  141
LCS_GDT     M       1     M       1      0    8  141     0    7   13   18   38   70   94  105  113  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K       2     K       2      3    8  141     2   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     Y       3     Y       3      3   12  141     3    9   22   50   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K       4     K       4      3   12  141     3    9   24   48   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A       5     A       5      4   12  141     3    4    7   17   39   66   85  101  114  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A       6     A       6      4   12  141     5    5   16   37   63   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I       7     I       7      4   12  141     3    4    7   17   36   67   93  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     F       8     F       8      5   12  141     3    5    8   13   26   60   83   99  117  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D       9     D       9      5   12  141     3    5    7   11   25   58   85  100  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     M      10     M      10      5   12  141     3    5   16   38   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D      11     D      11      5   12  141     3   12   15   38   64   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G      12     G      12      5   12  141     3   10   19   30   49   73   91  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     T      13     T      13      4   12  141     3    7   13   34   57   81   98  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I      14     I      14      4   12  141     3    9   16   45   68   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L      15     L      15      4   11  141     3   13   29   51   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D      16     D      16      4    4  141     3    4   12   26   52   71   93  105  117  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     109     G     109      3    4  141     3    4    4   25   54   79   95  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     110     P     110      3    4  141     3    4   10   11   13   38   88  105  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     F     111     F     111      3   14  141     3    4   13   22   39   60   84  104  118  123  127  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     112     P     112      3   14  141     3    3    5   12   19   24   38   51   96  114  123  126  129  132  134  134  135  135  136  136 
LCS_GDT     G     113     G     113     11   18  141     3    4   13   28   45   64   89  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I     114     I     114     11   32  141    10   11   25   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     115     L     115     11   32  141    10   11   23   40   68   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     116     D     116     11   32  141    10   11   24   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     117     L     117     11   32  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     M     118     M     118     11   32  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     119     K     119     11   32  141    10   11   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     N     120     N     120     11   32  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     121     L     121     11   32  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     R     122     R     122     11   32  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     Q     123     Q     123     11   32  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     124     K     124     11   32  141     4   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     125     G     125     10   32  141     4   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     126     V     126     10   32  141     3   12   22   52   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     127     K     127     10   32  141     5   11   27   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     128     L     128     10   32  141     5    9   27   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     129     A     129     10   32  141     5   10   20   42   67   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     130     V     130     10   32  141     5    9   20   42   65   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     131     V     131      4   32  141     3    4   13   35   61   83   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     S     132     S     132      4   32  141     3    8   27   50   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     N     133     N     133      4   32  141     3    5   19   41   60   80   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     134     K     134      4   32  141     4   11   16   42   60   77   98  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     135     P     135      4   32  141     3    5   17   36   59   78   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     N     136     N     136     12   32  141    10   11   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     137     E     137     12   32  141    10   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     138     A     138     12   32  141    10   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     139     V     139     12   32  141    10   11   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     Q     140     Q     140     12   32  141    10   11   25   50   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     141     V     141     12   32  141    10   11   20   42   67   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     142     L     142     12   32  141    10   11   17   36   59   80   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     143     V     143     12   32  141    10   11   17   30   56   78   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     144     E     144     12   32  141    10   11   19   33   59   82   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     145     E     145     12   32  141    10   11   13   18   38   70   92  105  116  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     146     L     146     12   17  141     4   11   12   15   24   37   57   89  109  118  126  130  132  133  134  134  135  135  136  136 
LCS_GDT     F     147     F     147     12   17  141     3    4   11   18   41   69   92  107  117  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     148     P     148      4   17  141     3   14   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     149     G     149      4    9  141     3    8   12   18   37   53   84   98  112  122  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     S     150     S     150      4    9  141     3    7   25   50   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     F     151     F     151      4    9  141     3    6   19   39   67   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     152     D     152      5    9  141     2   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     F     153     F     153      5    9  141     3   11   26   50   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     154     A     154      5    9  141     5   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     155     L     155      5    9  141     3    5   21   46   67   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     156     G     156      5   18  141     1    5   17   35   59   78   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     R     163     R     163      4   19  141     1    8   13   24   51   81   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     164     K     164      4   19  141     1    3   10   17   29   59   87  104  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     165     P     165     14   41  141     3    8   20   50   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     166     A     166     14   41  141     3    7   25   46   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     167     P     167     14   41  141     3   11   17   42   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     168     D     168     14   41  141    10   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     M     169     M     169     14   41  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     T     170     T     170     14   41  141    10   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     S     171     S     171     14   41  141    10   12   27   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     172     E     172     14   41  141    10   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     C     173     C     173     14   41  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     174     V     174     14   41  141    10   12   28   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     175     K     175     14   41  141    10   12   28   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     176     V     176     14   41  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     177     L     177     14   41  141    10   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     178     G     178     14   41  141     3   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     179     V     179     13   41  141     4   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     180     P     180      6   41  141     3   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     R     181     R     181      6   41  141     3    8   22   45   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     182     D     182      4   41  141     3    8   14   36   64   83   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     183     K     183      4   41  141     3    4    8   19   34   56   84  104  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     C     184     C     184      4   41  141     4    4   13   26   47   79   95  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     185     V     185      4   41  141     4   12   22   44   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     Y     186     Y     186      4   41  141     4   12   26   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I     187     I     187      4   41  141     4    8   21   38   67   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     188     G     188     12   41  141     2   10   26   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     189     D     189     12   41  141     4   10   25   40   68   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     S     190     S     190     12   41  141     3   12   26   51   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     191     E     191     12   41  141     6   16   26   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I     192     I     192     12   41  141     6   10   26   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     193     D     193     12   41  141     7   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I     194     I     194     12   41  141     7   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     Q     195     Q     195     12   41  141     7   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     T     196     T     196     12   41  141     7   11   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     197     A     197     12   41  141     7   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     R     198     R     198     12   41  141     7   15   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     N     199     N     199     12   41  141     7   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     S     200     S     200     12   41  141     4   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     201     E     201      6   41  141     4   11   24   46   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     M     202     M     202      6   41  141     4    8   22   46   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     203     D     203      6   41  141     3   12   24   46   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     204     E     204      6   41  141     4   12   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I     205     I     205      4   41  141     4    9   25   46   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     206     A     206      4   40  141     4    4    5   11   38   67   91  106  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     207     V     207      4   40  141     4    4   17   34   61   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     N     208     N     208      3   25  141     3    4   14   25   44   72   92  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     W     209     W     209      3    7  141     3    9   27   42   60   84   99  107  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     210     G     210      3   10  141     3    4   18   37   63   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     F     211     F     211      3   10  141     3    3    9   23   59   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     R     212     R     212      8   10  141     4   13   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     S     213     S     213      8   10  141     7   10   28   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     214     V     214      8   10  141     7   12   19   46   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     P     215     P     215      8   10  141     7   11   22   49   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     F     216     F     216      8   10  141     7   11   22   44   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     217     L     217      8   10  141     7    8   16   32   58   81   98  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     Q     218     Q     218      8   10  141     7    8   10   21   48   72   95  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     219     K     219      8   10  141     7    8   10   15   40   67   90  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     H     220     H     220      3   10  141     4   10   27   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     G     221     G     221      3   10  141     4   11   26   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     A     222     A     222      3    8  141     3    5   21   39   58   82   99  107  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     T     223     T     223      4    8  141     3    5   14   38   65   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     224     V     224      4    6  141     3    4   12   22   44   64   84  102  112  122  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     I     225     I     225      4    6  141     3    4   23   40   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     V     226     V     226      4    6  141     3   16   29   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     D     227     D     227      4    6  141     3    6   15   34   47   64   89   99  112  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     T     228     T     228      4   10  141     3    9   12   15   18   29   41   59   74   86  101  109  118  126  130  133  134  135  136  136 
LCS_GDT     A     229     A     229      9   10  141     8    9   12   15   23   35   46   64   81   97  115  125  129  132  133  134  135  135  136  136 
LCS_GDT     E     230     E     230      9   10  141     8    8    8   24   48   66   89  105  113  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     K     231     K     231      9   10  141     8   11   21   39   69   84   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     L     232     L     232      9   10  141     8   11   28   53   69   85   99  108  119  123  128  130  132  133  134  134  135  135  136  136 
LCS_GDT     E     233     E     233      9   10  141     8    8    8   14   17   30   56   79   98  112  122  128  132  133  134  134  135  135  136  136 
LCS_GDT     E     234     E     234      9   10  141     8    8    9   11   24   34   66   85   97  113  125  127  131  133  134  134  135  135  136  136 
LCS_GDT     A     235     A     235      9   10  141     8    8    8    9   11   17   24   33   41   70   84  112  120  126  130  133  134  135  135  136 
LCS_GDT     I     236     I     236      9   10  141     8    8    8    9   10   10   11   16   19   39   63   69   87   99  106  115  123  133  135  136 
LCS_GDT     L     237     L     237      9   10  141     3    4    7    9   10   10   11   13   18   22   27   38   46   53   78   89   94  101  107  113 
LCS_GDT     G     238     G     238      3   10  141     0    3    5    6    8   10   11   12   15   16   18   27   37   45   49   55   67   85   91  105 
LCS_GDT     E     239     E     239      3    4  141     0    3    3    4    4    5    5    6    6    7   11   18   23   30   41   53   62   70   75   77 
LCS_AVERAGE  LCS_A:  41.05  (   5.59   17.55  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     16     29     53     69     85     99    108    119    123    128    130    132    133    134    134    135    135    136    136 
GDT PERCENT_CA   7.09  11.35  20.57  37.59  48.94  60.28  70.21  76.60  84.40  87.23  90.78  92.20  93.62  94.33  95.04  95.04  95.74  95.74  96.45  96.45
GDT RMS_LOCAL    0.26   0.75   1.12   1.54   1.77   2.02   2.27   2.47   2.73   2.83   2.99   3.05   3.15   3.22   3.28   3.28   3.35   3.35   3.46   3.46
GDT RMS_ALL_CA   6.01   5.10   5.02   4.93   4.95   4.93   4.97   4.92   4.95   4.93   4.98   4.96   4.95   4.93   4.93   4.93   4.94   4.94   4.96   4.96

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.319
LGA    K       2      K       2          3.057
LGA    Y       3      Y       3          3.151
LGA    K       4      K       4          2.434
LGA    A       5      A       5          4.962
LGA    A       6      A       6          2.789
LGA    I       7      I       7          3.941
LGA    F       8      F       8          4.634
LGA    D       9      D       9          4.705
LGA    M      10      M      10          2.817
LGA    D      11      D      11          2.462
LGA    G      12      G      12          3.978
LGA    T      13      T      13          3.521
LGA    I      14      I      14          3.452
LGA    L      15      L      15          3.188
LGA    D      16      D      16          6.098
LGA    G     109      G     109          3.126
LGA    P     110      P     110          4.188
LGA    F     111      F     111          4.464
LGA    P     112      P     112          6.869
LGA    G     113      G     113          4.165
LGA    I     114      I     114          1.748
LGA    L     115      L     115          2.529
LGA    D     116      D     116          1.656
LGA    L     117      L     117          1.392
LGA    M     118      M     118          2.343
LGA    K     119      K     119          2.303
LGA    N     120      N     120          1.928
LGA    L     121      L     121          2.190
LGA    R     122      R     122          2.384
LGA    Q     123      Q     123          2.330
LGA    K     124      K     124          2.223
LGA    G     125      G     125          1.440
LGA    V     126      V     126          2.159
LGA    K     127      K     127          1.658
LGA    L     128      L     128          2.052
LGA    A     129      A     129          3.105
LGA    V     130      V     130          3.331
LGA    V     131      V     131          3.567
LGA    S     132      S     132          2.435
LGA    N     133      N     133          3.473
LGA    K     134      K     134          3.954
LGA    P     135      P     135          3.747
LGA    N     136      N     136          2.106
LGA    E     137      E     137          1.878
LGA    A     138      A     138          2.208
LGA    V     139      V     139          2.252
LGA    Q     140      Q     140          2.444
LGA    V     141      V     141          3.172
LGA    L     142      L     142          3.920
LGA    V     143      V     143          3.801
LGA    E     144      E     144          3.620
LGA    E     145      E     145          5.318
LGA    L     146      L     146          6.688
LGA    F     147      F     147          4.680
LGA    P     148      P     148          2.517
LGA    G     149      G     149          6.549
LGA    S     150      S     150          3.310
LGA    F     151      F     151          3.618
LGA    D     152      D     152          2.081
LGA    F     153      F     153          2.770
LGA    A     154      A     154          1.984
LGA    L     155      L     155          2.375
LGA    G     156      G     156          3.513
LGA    R     163      R     163          3.399
LGA    K     164      K     164          4.566
LGA    P     165      P     165          2.745
LGA    A     166      A     166          3.060
LGA    P     167      P     167          2.559
LGA    D     168      D     168          1.028
LGA    M     169      M     169          0.523
LGA    T     170      T     170          1.127
LGA    S     171      S     171          1.542
LGA    E     172      E     172          0.966
LGA    C     173      C     173          0.705
LGA    V     174      V     174          1.653
LGA    K     175      K     175          1.386
LGA    V     176      V     176          0.110
LGA    L     177      L     177          0.942
LGA    G     178      G     178          1.585
LGA    V     179      V     179          1.367
LGA    P     180      P     180          2.402
LGA    R     181      R     181          3.369
LGA    D     182      D     182          3.706
LGA    K     183      K     183          5.117
LGA    C     184      C     184          3.791
LGA    V     185      V     185          2.139
LGA    Y     186      Y     186          1.854
LGA    I     187      I     187          2.838
LGA    G     188      G     188          1.334
LGA    D     189      D     189          2.956
LGA    S     190      S     190          2.349
LGA    E     191      E     191          2.266
LGA    I     192      I     192          1.924
LGA    D     193      D     193          1.089
LGA    I     194      I     194          1.802
LGA    Q     195      Q     195          2.018
LGA    T     196      T     196          1.604
LGA    A     197      A     197          1.550
LGA    R     198      R     198          1.685
LGA    N     199      N     199          1.606
LGA    S     200      S     200          1.482
LGA    E     201      E     201          2.539
LGA    M     202      M     202          2.425
LGA    D     203      D     203          2.509
LGA    E     204      E     204          2.032
LGA    I     205      I     205          3.071
LGA    A     206      A     206          4.552
LGA    V     207      V     207          3.389
LGA    N     208      N     208          4.095
LGA    W     209      W     209          5.077
LGA    G     210      G     210          3.881
LGA    F     211      F     211          4.132
LGA    R     212      R     212          0.990
LGA    S     213      S     213          0.296
LGA    V     214      V     214          1.583
LGA    P     215      P     215          1.913
LGA    F     216      F     216          2.325
LGA    L     217      L     217          3.079
LGA    Q     218      Q     218          3.795
LGA    K     219      K     219          4.510
LGA    H     220      H     220          1.216
LGA    G     221      G     221          2.077
LGA    A     222      A     222          5.112
LGA    T     223      T     223          3.985
LGA    V     224      V     224          5.748
LGA    I     225      I     225          3.574
LGA    V     226      V     226          2.922
LGA    D     227      D     227          7.637
LGA    T     228      T     228         12.300
LGA    A     229      A     229         10.010
LGA    E     230      E     230          7.470
LGA    K     231      K     231          3.085
LGA    L     232      L     232          1.405
LGA    E     233      E     233          7.688
LGA    E     234      E     234          7.194
LGA    A     235      A     235          9.804
LGA    I     236      I     236         12.998
LGA    L     237      L     237         17.704
LGA    G     238      G     238         22.050
LGA    E     239      E     239         23.367

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  141    4.0    108    2.47    55.142    50.759     4.195

LGA_LOCAL      RMSD =  2.475  Number of atoms =  108  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.907  Number of atoms =  141 
Std_ALL_ATOMS  RMSD =  4.859  (standard rmsd on all 141 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.698446 * X  +   0.360612 * Y  +   0.618168 * Z  +  -4.181783
  Y_new =   0.142611 * X  +   0.916578 * Y  +  -0.373560 * Z  +   8.292279
  Z_new =  -0.701309 * X  +  -0.172754 * Y  +  -0.691608 * Z  +  40.467487 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.896815    0.244777  [ DEG:  -165.9753     14.0247 ]
  Theta =   0.777232    2.364360  [ DEG:    44.5321    135.4679 ]
  Phi   =   2.940178   -0.201415  [ DEG:   168.4598    -11.5402 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0329TS168_4-D1                               
REMARK     2: T0329_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0329TS168_4-D1.T0329_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  141   4.0  108   2.47  50.759     4.86
REMARK  ---------------------------------------------------------- 
MOLECULE T0329TS168_4-D1
PFRMAT TS
TARGET T0329
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      20.260  -3.927  28.253  1.00 25.00           C
ATOM      2  CA  LYS     2      17.456  -2.223  30.100  1.00 25.00           C
ATOM      3  CA  TYR     3      15.419   0.911  30.580  1.00 25.00           C
ATOM      4  CA  LYS     4      16.814   2.062  33.908  1.00 25.00           C
ATOM      5  CA  ALA     5      13.703   1.111  35.824  1.00 25.00           C
ATOM      6  CA  ALA     6      11.100   3.050  37.875  1.00 25.00           C
ATOM      7  CA  ILE     7       7.892   5.187  37.688  1.00 25.00           C
ATOM      8  CA  PHE     8       6.163   4.853  41.105  1.00 25.00           C
ATOM      9  CA  ASP     9       5.532   8.633  41.036  1.00 25.00           C
ATOM     10  CA  MET    10       2.763  10.366  42.943  1.00 25.00           C
ATOM     11  CA  ASP    11      -0.652  11.714  41.925  1.00 25.00           C
ATOM     12  CA  GLY    12      -1.725   9.482  39.006  1.00 25.00           C
ATOM     13  CA  THR    13      -2.469   5.890  39.990  1.00 25.00           C
ATOM     14  CA  ILE    14       1.274   5.926  40.848  1.00 25.00           C
ATOM     15  CA  LEU    15       0.510   5.941  44.589  1.00 25.00           C
ATOM     16  CA  ASP    16      -0.966   2.505  45.265  1.00 25.00           C
ATOM    109  CA  GLY   109      -0.596  11.655  53.629  1.00 25.00           C
ATOM    110  CA  PRO   110       0.297   7.976  52.972  1.00 25.00           C
ATOM    111  CA  PHE   111       1.415   8.485  49.373  1.00 25.00           C
ATOM    112  CA  PRO   112       4.838   7.697  50.853  1.00 25.00           C
ATOM    113  CA  GLY   113       4.307   4.274  49.354  1.00 25.00           C
ATOM    114  CA  ILE   114       6.008   3.803  46.030  1.00 25.00           C
ATOM    115  CA  LEU   115       8.927   5.724  47.598  1.00 25.00           C
ATOM    116  CA  ASP   116      10.400   2.448  48.927  1.00 25.00           C
ATOM    117  CA  LEU   117      10.080   0.867  45.453  1.00 25.00           C
ATOM    118  CA  MET   118      11.828   3.894  43.887  1.00 25.00           C
ATOM    119  CA  LYS   119      14.652   3.625  46.461  1.00 25.00           C
ATOM    120  CA  ASN   120      15.034  -0.107  45.689  1.00 25.00           C
ATOM    121  CA  LEU   121      15.188   0.660  41.940  1.00 25.00           C
ATOM    122  CA  ARG   122      17.863   3.327  42.570  1.00 25.00           C
ATOM    123  CA  GLN   123      19.890   0.835  44.656  1.00 25.00           C
ATOM    124  CA  LYS   124      22.104   0.784  41.580  1.00 25.00           C
ATOM    125  CA  GLY   125      22.394   4.447  40.729  1.00 25.00           C
ATOM    126  CA  VAL   126      19.545   5.443  38.348  1.00 25.00           C
ATOM    127  CA  LYS   127      16.054   7.006  38.671  1.00 25.00           C
ATOM    128  CA  LEU   128      12.357   7.884  38.483  1.00 25.00           C
ATOM    129  CA  ALA   129      10.014   9.372  35.841  1.00 25.00           C
ATOM    130  CA  VAL   130       6.258   9.893  36.216  1.00 25.00           C
ATOM    131  CA  VAL   131       4.497  12.722  37.991  1.00 25.00           C
ATOM    132  CA  SER   132       1.725  11.466  35.628  1.00 25.00           C
ATOM    133  CA  ASN   133       0.831  12.844  32.205  1.00 25.00           C
ATOM    134  CA  LYS   134      -1.780  14.788  34.181  1.00 25.00           C
ATOM    135  CA  PRO   135       0.498  17.614  35.480  1.00 25.00           C
ATOM    136  CA  ASN   136       1.005  20.737  37.603  1.00 25.00           C
ATOM    137  CA  GLU   137       1.731  21.928  41.170  1.00 25.00           C
ATOM    138  CA  ALA   138       0.441  18.604  42.568  1.00 25.00           C
ATOM    139  CA  VAL   139       2.668  16.680  40.117  1.00 25.00           C
ATOM    140  CA  GLN   140       5.689  18.786  41.171  1.00 25.00           C
ATOM    141  CA  VAL   141       4.917  18.091  44.857  1.00 25.00           C
ATOM    142  CA  LEU   142       4.668  14.340  44.124  1.00 25.00           C
ATOM    143  CA  VAL   143       8.031  14.450  42.293  1.00 25.00           C
ATOM    144  CA  GLU   144       9.616  16.275  45.263  1.00 25.00           C
ATOM    145  CA  GLU   145       8.208  13.644  47.663  1.00 25.00           C
ATOM    146  CA  LEU   146       9.617  10.845  45.460  1.00 25.00           C
ATOM    147  CA  PHE   147      13.040  12.562  45.426  1.00 25.00           C
ATOM    148  CA  PRO   148      12.947  12.877  49.241  1.00 25.00           C
ATOM    149  CA  GLY   149      12.061   9.164  49.552  1.00 25.00           C
ATOM    150  CA  SER   150      14.965   8.251  47.229  1.00 25.00           C
ATOM    151  CA  PHE   151      15.500   9.485  43.689  1.00 25.00           C
ATOM    152  CA  ASP   152      15.839  11.727  40.652  1.00 25.00           C
ATOM    153  CA  PHE   153      12.545  13.122  39.397  1.00 25.00           C
ATOM    154  CA  ALA   154       9.590  14.528  37.501  1.00 25.00           C
ATOM    155  CA  LEU   155       8.731  16.763  34.533  1.00 25.00           C
ATOM    156  CA  GLY   156       5.104  16.139  33.686  1.00 25.00           C
ATOM    163  CA  ARG   163      -2.862  17.730  27.109  1.00 25.00           C
ATOM    164  CA  LYS   164      -3.318  14.758  29.411  1.00 25.00           C
ATOM    165  CA  PRO   165      -1.194  13.386  26.547  1.00 25.00           C
ATOM    166  CA  ALA   166       2.240  15.094  26.581  1.00 25.00           C
ATOM    167  CA  PRO   167       5.156  12.611  26.556  1.00 25.00           C
ATOM    168  CA  ASP   168       7.333  15.631  25.658  1.00 25.00           C
ATOM    169  CA  MET   169       7.689  16.508  29.369  1.00 25.00           C
ATOM    170  CA  THR   170       8.697  12.897  30.151  1.00 25.00           C
ATOM    171  CA  SER   171      11.297  12.987  27.341  1.00 25.00           C
ATOM    172  CA  GLU   172      12.695  16.281  28.707  1.00 25.00           C
ATOM    173  CA  CYS   173      12.916  14.760  32.215  1.00 25.00           C
ATOM    174  CA  VAL   174      14.750  11.709  30.803  1.00 25.00           C
ATOM    175  CA  LYS   175      17.199  14.003  28.958  1.00 25.00           C
ATOM    176  CA  VAL   176      17.823  15.972  32.183  1.00 25.00           C
ATOM    177  CA  LEU   177      18.464  12.707  34.081  1.00 25.00           C
ATOM    178  CA  GLY   178      21.290  11.646  31.760  1.00 25.00           C
ATOM    179  CA  VAL   179      19.472   9.303  29.353  1.00 25.00           C
ATOM    180  CA  PRO   180      19.598   8.592  25.561  1.00 25.00           C
ATOM    181  CA  ARG   181      15.825   9.133  25.815  1.00 25.00           C
ATOM    182  CA  ASP   182      15.605   5.490  26.975  1.00 25.00           C
ATOM    183  CA  LYS   183      15.279   6.642  30.612  1.00 25.00           C
ATOM    184  CA  CYS   184      13.457   5.773  33.858  1.00 25.00           C
ATOM    185  CA  VAL   185      10.110   4.321  32.783  1.00 25.00           C
ATOM    186  CA  TYR   186       6.773   6.114  32.441  1.00 25.00           C
ATOM    187  CA  ILE   187       3.701   5.499  34.544  1.00 25.00           C
ATOM    188  CA  GLY   188       1.124   3.420  36.325  1.00 25.00           C
ATOM    189  CA  ASP   189      -1.415   5.610  34.430  1.00 25.00           C
ATOM    190  CA  SER   190      -4.243   6.411  32.082  1.00 25.00           C
ATOM    191  CA  GLU   191      -3.547   6.161  28.355  1.00 25.00           C
ATOM    192  CA  ILE   192      -0.877   8.808  29.088  1.00 25.00           C
ATOM    193  CA  ASP   193       1.641   6.060  29.968  1.00 25.00           C
ATOM    194  CA  ILE   194       0.823   4.231  26.704  1.00 25.00           C
ATOM    195  CA  GLN   195       1.313   7.477  24.732  1.00 25.00           C
ATOM    196  CA  THR   196       4.687   8.044  26.455  1.00 25.00           C
ATOM    197  CA  ALA   197       5.750   4.464  25.603  1.00 25.00           C
ATOM    198  CA  ARG   198       4.733   5.005  21.951  1.00 25.00           C
ATOM    199  CA  ASN   199       6.748   8.260  21.846  1.00 25.00           C
ATOM    200  CA  SER   200       9.307   9.384  24.448  1.00 25.00           C
ATOM    201  CA  GLU   201      11.668   6.555  23.831  1.00 25.00           C
ATOM    202  CA  MET   202      10.564   5.405  27.258  1.00 25.00           C
ATOM    203  CA  ASP   203      11.137   1.722  27.898  1.00 25.00           C
ATOM    204  CA  GLU   204       7.558   1.549  29.268  1.00 25.00           C
ATOM    205  CA  ILE   205       4.550   1.165  31.545  1.00 25.00           C
ATOM    206  CA  ALA   206       5.618   0.818  35.180  1.00 25.00           C
ATOM    207  CA  VAL   207       3.574  -0.119  38.179  1.00 25.00           C
ATOM    208  CA  ASN   208       0.304  -0.037  40.026  1.00 25.00           C
ATOM    209  CA  TRP   209      -2.067  -2.581  38.490  1.00 25.00           C
ATOM    210  CA  GLY   210      -4.654  -0.652  40.500  1.00 25.00           C
ATOM    211  CA  PHE   211      -4.476   1.923  37.692  1.00 25.00           C
ATOM    212  CA  ARG   212      -7.301   1.646  35.246  1.00 25.00           C
ATOM    213  CA  SER   213      -8.846  -1.556  36.573  1.00 25.00           C
ATOM    214  CA  VAL   214      -6.698  -4.735  36.756  1.00 25.00           C
ATOM    215  CA  PRO   215      -7.567  -5.801  33.180  1.00 25.00           C
ATOM    216  CA  PHE   216      -6.995  -2.220  31.948  1.00 25.00           C
ATOM    217  CA  LEU   217      -3.607  -2.120  33.731  1.00 25.00           C
ATOM    218  CA  GLN   218      -2.636  -5.459  32.124  1.00 25.00           C
ATOM    219  CA  LYS   219      -3.642  -4.120  28.680  1.00 25.00           C
ATOM    220  CA  HIS   220      -5.762  -1.972  26.292  1.00 25.00           C
ATOM    221  CA  GLY   221      -2.407  -0.474  25.316  1.00 25.00           C
ATOM    222  CA  ALA   222       1.317  -0.984  24.756  1.00 25.00           C
ATOM    223  CA  THR   223       3.635  -2.865  27.065  1.00 25.00           C
ATOM    224  CA  VAL   224       0.867  -1.844  29.452  1.00 25.00           C
ATOM    225  CA  ILE   225       2.365  -3.549  32.503  1.00 25.00           C
ATOM    226  CA  VAL   226       2.011  -4.858  36.043  1.00 25.00           C
ATOM    227  CA  ASP   227       3.559  -8.321  35.986  1.00 25.00           C
ATOM    228  CA  THR   228       6.874  -8.842  34.103  1.00 25.00           C
ATOM    229  CA  ALA   229       8.426  -6.840  36.940  1.00 25.00           C
ATOM    230  CA  GLU   230       8.702  -9.458  39.722  1.00 25.00           C
ATOM    231  CA  LYS   231       9.821  -6.753  42.190  1.00 25.00           C
ATOM    232  CA  LEU   232       6.855  -4.557  41.166  1.00 25.00           C
ATOM    233  CA  GLU   233       4.466  -7.507  41.667  1.00 25.00           C
ATOM    234  CA  GLU   234       5.960  -8.162  45.132  1.00 25.00           C
ATOM    235  CA  ALA   235       5.530  -4.466  46.042  1.00 25.00           C
ATOM    236  CA  ILE   236       1.884  -4.578  44.875  1.00 25.00           C
ATOM    237  CA  LEU   237       0.896  -5.307  48.487  1.00 25.00           C
ATOM    238  CA  GLY   238      -1.957  -3.512  50.206  1.00 25.00           C
ATOM    239  CA  GLU   239      -4.197  -0.577  49.292  1.00 25.00           C
TER
END
