
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  141 , name T0329TS393_5-D1
# Molecule2: number of CA atoms  141 ( 1070),  selected  141 , name T0329_D1.pdb
# PARAMETERS: T0329TS393_5-D1.T0329_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 238         4.77     5.18
  LCS_AVERAGE:     98.70

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40       166 - 205         1.98     5.57
  LCS_AVERAGE:     15.42

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       187 - 202         0.93     5.29
  LCS_AVERAGE:      6.34

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  141
LCS_GDT     M       1     M       1      0    9  140     1   11   24   43   61   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K       2     K       2      3    9  140     4   13   25   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     Y       3     Y       3      4    9  140     4   12   27   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K       4     K       4      4    9  140     3    9   26   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A       5     A       5      4    9  140     4   14   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A       6     A       6      4   11  140     4    4   16   31   51   69   87  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I       7     I       7      4   11  140     4    8   26   38   58   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     F       8     F       8      4   11  140     4    5   10   15   33   59   83  106  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D       9     D       9      4   11  140     4    4   10   15   27   41   80  105  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     M      10     M      10      6   11  140     3   14   27   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D      11     D      11      6   11  140     3   12   26   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G      12     G      12      6   11  140     3    6   18   40   58   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     T      13     T      13      6   11  140     3    6   14   30   47   71   92  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I      14     I      14      6   11  140     3    8   22   37   52   72   89  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L      15     L      15      6   11  140    12   23   30   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D      16     D      16      4   11  140     3   20   30   42   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     109     G     109      4    6  140     3    4    4    7   19   35   70   83   99  112  121  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     110     P     110      4    6  140     3    5   12   24   42   60   81   97  112  121  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     F     111     F     111      4    6  140     3   20   30   40   56   74   97  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     112     P     112      4    6  140     3    6   10   25   42   55   78   89  104  118  124  126  130  131  133  134  135  136  136  136 
LCS_GDT     G     113     G     113      4   12  140     3    3    5   12   24   40   54   73   90  104  117  124  127  130  133  134  135  136  136  136 
LCS_GDT     I     114     I     114     11   13  140    12   23   30   41   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     115     L     115     11   13  140    10   11   21   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     116     D     116     11   13  140    10   11   11   27   54   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     117     L     117     11   13  140    10   11   15   40   58   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     M     118     M     118     11   13  140    10   11   22   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     119     K     119     11   13  140    10   11   19   36   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     N     120     N     120     11   13  140    10   11   11   17   42   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     121     L     121     11   13  140    11   23   30   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     R     122     R     122     11   13  140    10   11   16   36   54   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     Q     123     Q     123     11   13  140    10   11   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     124     K     124     11   13  140     5   22   30   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     125     G     125      6   13  140     3    8   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     126     V     126      6   13  140     3   14   27   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     127     K     127      6   16  140     3    5   11   18   35   51   73   88  106  120  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     128     L     128      6   16  140     3    6   18   33   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     129     A     129      6   16  140     3    5    7   12   28   49   66   85   99  112  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     130     V     130      4   18  140     3    4    9   17   40   61   77  104  118  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     131     V     131      4   18  140     3    8   27   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     S     132     S     132      4   18  140     3    5   12   30   54   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     N     133     N     133     13   18  140     3    9   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     134     K     134     13   18  140     3    9   19   32   53   73   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     135     P     135     13   18  140     1    9   19   32   47   73   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     N     136     N     136     13   18  140    11   18   28   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     137     E     137     13   18  140     9   11   26   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     138     A     138     13   18  140     9   12   26   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     139     V     139     13   18  140     9   14   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     Q     140     Q     140     13   18  140     9   14   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     141     V     141     13   18  140     9   12   21   40   58   73   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     142     L     142     13   18  140     9   11   19   32   45   67   85  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     143     V     143     13   18  140     9   11   14   28   42   62   84  106  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     144     E     144     13   18  140     7   11   19   33   54   67   89  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     145     E     145     13   18  140     9   11   16   27   41   60   74   94  111  124  126  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     146     L     146     12   18  140     4   11   13   17   25   44   54   75   84   99  118  126  130  132  133  134  135  136  136  136 
LCS_GDT     F     147     F     147     12   18  140     3    6   12   17   24   39   62   82   97  111  125  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     148     P     148      4   18  140     3    8   22   41   58   73   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     149     G     149      4    5  140     3    5    8   27   47   69   96  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     S     150     S     150      4    5  140     3    4    6   28   58   73   97  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     F     151     F     151      4   16  140     3    4   14   29   46   73   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     152     D     152      4   18  140     3    4    9   30   47   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     F     153     F     153      4   18  140     1   14   26   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     154     A     154      4   18  140     3   14   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     155     L     155      4   18  140     3    9   22   41   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     156     G     156      4   18  140     3   14   24   40   59   75   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     R     163     R     163     15   18  140     6   14   15   36   54   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     164     K     164     15   18  140     3   10   15   16   34   61   89  107  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     165     P     165     15   18  140     3   14   17   29   49   70   91  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     166     A     166     15   40  140     5   14   21   38   58   76   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     167     P     167     15   40  140     9   14   19   34   58   76   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     168     D     168     15   40  140    10   14   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     M     169     M     169     15   40  140    11   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     T     170     T     170     15   40  140    10   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     S     171     S     171     15   40  140    10   14   21   41   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     172     E     172     15   40  140    10   14   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     C     173     C     173     15   40  140    10   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     174     V     174     15   40  140    10   14   21   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     175     K     175     15   40  140    10   14   27   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     176     V     176     15   40  140    10   22   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     177     L     177     15   40  140    10   23   30   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     178     G     178     12   40  140     4   10   21   40   58   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     179     V     179      5   40  140     4   10   21   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     180     P     180      5   40  140     4    8   21   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     R     181     R     181      5   40  140     4    5   12   32   57   75   96  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     182     D     182      7   40  140     4    6   16   25   38   57   77   96  110  121  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     183     K     183      7   40  140     4    8   17   31   51   75   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     C     184     C     184      7   40  140     4   19   28   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     185     V     185      7   40  140     4    9   28   39   58   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     Y     186     Y     186      7   40  140     3    5   24   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I     187     I     187     16   40  140     3   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     188     G     188     16   40  140     8   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     189     D     189     16   40  140     3   10   23   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     S     190     S     190     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     191     E     191     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I     192     I     192     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     193     D     193     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I     194     I     194     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     Q     195     Q     195     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     T     196     T     196     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     197     A     197     16   40  140    11   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     R     198     R     198     16   40  140     9   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     N     199     N     199     16   40  140     9   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     S     200     S     200     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     201     E     201     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     M     202     M     202     16   40  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     203     D     203     15   40  140     3    8   20   39   58   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     204     E     204     15   40  140     3   12   26   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I     205     I     205      6   40  140     4    8   22   39   58   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     206     A     206      6   39  140     4    7   18   33   51   74   93  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     207     V     207      6   32  140     4    4   20   37   52   75   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     N     208     N     208      6   31  140     4    4   18   32   47   64   83  107  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     W     209     W     209      3   31  140     3   10   23   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     210     G     210      4   31  140     3    4   19   39   58   76   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     F     211     F     211      6   31  140     3    8   13   27   44   71   93  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     R     212     R     212      6   31  140     3    9   23   41   58   75   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     S     213     S     213      7   31  140     4   13   26   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     214     V     214      7   28  140     6    6   19   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     P     215     P     215      7   13  140     6   11   21   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     F     216     F     216      7   13  140     6   17   28   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     217     L     217      7   13  140    12   23   30   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     Q     218     Q     218      7   13  140     6    6   21   41   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     219     K     219      7   13  140     6    6   12   30   48   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     H     220     H     220      5   13  140     3    5    5   35   54   70   93  108  118  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     G     221     G     221      5   13  140     3    9   24   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     222     A     222      5    8  140     3    5   13   25   51   72   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     T     223     T     223      5    8  140     3   10   21   40   59   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     224     V     224      4    8  140     3    4    9   19   38   64   88  106  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     I     225     I     225      4    8  140     3    9   22   42   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     V     226     V     226      4    8  140     4    8   21   43   61   79   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     D     227     D     227      4    8  140     4    5   10   27   41   61   87  107  116  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     T     228     T     228      4    6  140     4    5    5   26   36   44   53   79   97  113  122  128  130  132  133  134  135  136  136  136 
LCS_GDT     A     229     A     229      8   10  140     8    8   17   27   41   56   79   92  113  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     230     E     230      8   10  140     8   12   20   40   58   74   98  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     K     231     K     231      8   10  140     8   16   28   39   55   74   90  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     L     232     L     232      8   10  140     8    8   24   40   54   75   96  108  119  124  127  128  130  132  133  134  135  136  136  136 
LCS_GDT     E     233     E     233      8   10  140     8    8    9    9   11   11   52   68   80   99  115  125  128  131  133  134  135  136  136  136 
LCS_GDT     E     234     E     234      8   10  140     8    8    9    9   11   28   39   58   75   88  106  123  127  130  131  134  135  136  136  136 
LCS_GDT     A     235     A     235      8   10  140     8    8    9    9   11   11   15   23   32   46   64   76   93  101  107  121  130  132  134  136 
LCS_GDT     I     236     I     236      8   10  140     8    8    9    9   11   11   12   13   25   31   36   54   65   85   92   97  103  118  123  127 
LCS_GDT     L     237     L     237      3   10  140     3    3    3    9   11   11   12   17   20   25   30   33   44   52   71   74   81   90   95   98 
LCS_GDT     G     238     G     238      3   10  140     3    3    3    3    4    7   12   17   20   22   24   26   36   41   49   59   72   78   88   93 
LCS_GDT     E     239     E     239      3    4   22     3    3    3    3    4    4    6   15   20   22   24   26   28   41   49   59   66   69   82   92 
LCS_AVERAGE  LCS_A:  40.15  (   6.34   15.42   98.70 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     23     30     43     61     79     98    108    119    124    127    128    130    132    133    134    135    136    136    136 
GDT PERCENT_CA   8.51  16.31  21.28  30.50  43.26  56.03  69.50  76.60  84.40  87.94  90.07  90.78  92.20  93.62  94.33  95.04  95.74  96.45  96.45  96.45
GDT RMS_LOCAL    0.28   0.63   0.88   1.50   1.79   2.12   2.43   2.59   2.83   2.96   3.06   3.09   3.19   3.30   3.35   3.41   3.48   3.57   3.57   3.57
GDT RMS_ALL_CA   5.36   5.52   5.49   5.27   5.30   5.26   5.29   5.28   5.30   5.34   5.32   5.33   5.36   5.37   5.35   5.33   5.32   5.29   5.29   5.29

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.013
LGA    K       2      K       2          1.969
LGA    Y       3      Y       3          1.369
LGA    K       4      K       4          1.978
LGA    A       5      A       5          1.077
LGA    A       6      A       6          4.203
LGA    I       7      I       7          2.834
LGA    F       8      F       8          4.486
LGA    D       9      D       9          4.835
LGA    M      10      M      10          1.098
LGA    D      11      D      11          1.882
LGA    G      12      G      12          3.414
LGA    T      13      T      13          3.793
LGA    I      14      I      14          3.942
LGA    L      15      L      15          2.003
LGA    D      16      D      16          2.505
LGA    G     109      G     109          7.336
LGA    P     110      P     110          5.531
LGA    F     111      F     111          3.240
LGA    P     112      P     112          6.736
LGA    G     113      G     113          8.128
LGA    I     114      I     114          2.506
LGA    L     115      L     115          2.293
LGA    D     116      D     116          3.590
LGA    L     117      L     117          2.979
LGA    M     118      M     118          2.343
LGA    K     119      K     119          3.166
LGA    N     120      N     120          3.392
LGA    L     121      L     121          3.133
LGA    R     122      R     122          3.265
LGA    Q     123      Q     123          2.913
LGA    K     124      K     124          2.532
LGA    G     125      G     125          2.619
LGA    V     126      V     126          2.041
LGA    K     127      K     127          5.802
LGA    L     128      L     128          3.234
LGA    A     129      A     129          5.961
LGA    V     130      V     130          4.548
LGA    V     131      V     131          1.984
LGA    S     132      S     132          3.545
LGA    N     133      N     133          1.933
LGA    K     134      K     134          3.264
LGA    P     135      P     135          3.140
LGA    N     136      N     136          0.902
LGA    E     137      E     137          1.497
LGA    A     138      A     138          2.185
LGA    V     139      V     139          1.746
LGA    Q     140      Q     140          2.035
LGA    V     141      V     141          3.286
LGA    L     142      L     142          4.358
LGA    V     143      V     143          4.454
LGA    E     144      E     144          4.157
LGA    E     145      E     145          6.005
LGA    L     146      L     146          8.067
LGA    F     147      F     147          6.874
LGA    P     148      P     148          3.398
LGA    G     149      G     149          4.337
LGA    S     150      S     150          3.755
LGA    F     151      F     151          3.590
LGA    D     152      D     152          3.369
LGA    F     153      F     153          1.422
LGA    A     154      A     154          2.004
LGA    L     155      L     155          2.485
LGA    G     156      G     156          2.423
LGA    R     163      R     163          2.927
LGA    K     164      K     164          4.519
LGA    P     165      P     165          4.547
LGA    A     166      A     166          3.237
LGA    P     167      P     167          3.445
LGA    D     168      D     168          2.260
LGA    M     169      M     169          1.415
LGA    T     170      T     170          2.046
LGA    S     171      S     171          2.594
LGA    E     172      E     172          2.120
LGA    C     173      C     173          1.897
LGA    V     174      V     174          2.608
LGA    K     175      K     175          2.264
LGA    V     176      V     176          1.753
LGA    L     177      L     177          2.299
LGA    G     178      G     178          3.548
LGA    V     179      V     179          3.237
LGA    P     180      P     180          3.343
LGA    R     181      R     181          3.788
LGA    D     182      D     182          6.291
LGA    K     183      K     183          3.595
LGA    C     184      C     184          2.768
LGA    V     185      V     185          3.103
LGA    Y     186      Y     186          2.558
LGA    I     187      I     187          1.831
LGA    G     188      G     188          2.073
LGA    D     189      D     189          1.926
LGA    S     190      S     190          0.679
LGA    E     191      E     191          0.972
LGA    I     192      I     192          0.659
LGA    D     193      D     193          0.949
LGA    I     194      I     194          1.019
LGA    Q     195      Q     195          0.792
LGA    T     196      T     196          0.572
LGA    A     197      A     197          1.338
LGA    R     198      R     198          1.615
LGA    N     199      N     199          1.356
LGA    S     200      S     200          1.309
LGA    E     201      E     201          1.055
LGA    M     202      M     202          0.985
LGA    D     203      D     203          3.066
LGA    E     204      E     204          1.374
LGA    I     205      I     205          2.770
LGA    A     206      A     206          3.778
LGA    V     207      V     207          3.240
LGA    N     208      N     208          4.641
LGA    W     209      W     209          2.831
LGA    G     210      G     210          3.061
LGA    F     211      F     211          4.439
LGA    R     212      R     212          3.135
LGA    S     213      S     213          1.686
LGA    V     214      V     214          2.532
LGA    P     215      P     215          2.710
LGA    F     216      F     216          0.955
LGA    L     217      L     217          0.957
LGA    Q     218      Q     218          1.787
LGA    K     219      K     219          3.391
LGA    H     220      H     220          3.866
LGA    G     221      G     221          2.421
LGA    A     222      A     222          3.848
LGA    T     223      T     223          2.486
LGA    V     224      V     224          4.572
LGA    I     225      I     225          2.092
LGA    V     226      V     226          2.311
LGA    D     227      D     227          5.624
LGA    T     228      T     228          8.017
LGA    A     229      A     229          6.399
LGA    E     230      E     230          3.756
LGA    K     231      K     231          3.881
LGA    L     232      L     232          3.507
LGA    E     233      E     233          8.130
LGA    E     234      E     234          9.858
LGA    A     235      A     235         13.108
LGA    I     236      I     236         15.431
LGA    L     237      L     237         21.323
LGA    G     238      G     238         25.467
LGA    E     239      E     239         25.531

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  141    4.0    108    2.59    54.610    49.378     4.008

LGA_LOCAL      RMSD =  2.594  Number of atoms =  108  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.267  Number of atoms =  141 
Std_ALL_ATOMS  RMSD =  5.171  (standard rmsd on all 141 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.805820 * X  +  -0.052472 * Y  +   0.589831 * Z  +  -2.964507
  Y_new =   0.231050 * X  +  -0.889255 * Y  +  -0.394767 * Z  +  11.353918
  Z_new =   0.545225 * X  +   0.454391 * Y  +  -0.704456 * Z  +  37.554447 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.568723   -0.572869  [ DEG:   147.1770    -32.8230 ]
  Theta =  -0.576658   -2.564935  [ DEG:   -33.0400   -146.9600 ]
  Phi   =   0.279235   -2.862357  [ DEG:    15.9990   -164.0010 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0329TS393_5-D1                               
REMARK     2: T0329_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0329TS393_5-D1.T0329_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  141   4.0  108   2.59  49.378     5.17
REMARK  ---------------------------------------------------------- 
MOLECULE T0329TS393_5-D1
PFRMAT TS
TARGET T0329
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      20.284  -5.117  32.623  1.00 25.00           C
ATOM      2  CA  LYS     2      18.486  -1.840  32.186  1.00 25.00           C
ATOM      3  CA  TYR     3      15.488   0.449  32.775  1.00 25.00           C
ATOM      4  CA  LYS     4      17.900   3.387  32.781  1.00 25.00           C
ATOM      5  CA  ALA     5      16.490   6.334  34.636  1.00 25.00           C
ATOM      6  CA  ALA     6      13.778   8.773  35.581  1.00 25.00           C
ATOM      7  CA  ILE     7      10.382  10.333  34.865  1.00 25.00           C
ATOM      8  CA  PHE     8       9.200  11.054  38.409  1.00 25.00           C
ATOM      9  CA  ASP     9       5.834  11.860  39.868  1.00 25.00           C
ATOM     10  CA  MET    10       2.325  10.433  39.197  1.00 25.00           C
ATOM     11  CA  ASP    11      -0.682   8.498  40.570  1.00 25.00           C
ATOM     12  CA  GLY    12       0.330   4.995  41.797  1.00 25.00           C
ATOM     13  CA  THR    13       3.021   6.891  43.646  1.00 25.00           C
ATOM     14  CA  ILE    14       2.965  10.698  44.281  1.00 25.00           C
ATOM     15  CA  LEU    15      -0.675  10.622  45.487  1.00 25.00           C
ATOM     16  CA  ASP    16      -3.444  10.187  47.975  1.00 25.00           C
ATOM    109  CA  GLY   109      -3.703   4.855  47.496  1.00 25.00           C
ATOM    110  CA  PRO   110      -2.741   5.910  50.991  1.00 25.00           C
ATOM    111  CA  PHE   111       0.869   6.975  50.169  1.00 25.00           C
ATOM    112  CA  PRO   112       2.834   7.673  53.342  1.00 25.00           C
ATOM    113  CA  GLY   113       5.798   8.373  51.056  1.00 25.00           C
ATOM    114  CA  ILE   114       5.392   5.419  48.613  1.00 25.00           C
ATOM    115  CA  LEU   115       7.630   3.307  50.894  1.00 25.00           C
ATOM    116  CA  ASP   116       8.177   0.785  48.065  1.00 25.00           C
ATOM    117  CA  LEU   117       9.094   3.632  45.673  1.00 25.00           C
ATOM    118  CA  MET   118      11.572   5.024  48.239  1.00 25.00           C
ATOM    119  CA  LYS   119      13.138   1.554  48.646  1.00 25.00           C
ATOM    120  CA  ASN   120      13.460   1.225  44.845  1.00 25.00           C
ATOM    121  CA  LEU   121      15.126   4.669  44.664  1.00 25.00           C
ATOM    122  CA  ARG   122      17.569   3.660  47.435  1.00 25.00           C
ATOM    123  CA  GLN   123      18.399   0.426  45.559  1.00 25.00           C
ATOM    124  CA  LYS   124      20.954   2.610  43.764  1.00 25.00           C
ATOM    125  CA  GLY   125      19.632   1.929  40.282  1.00 25.00           C
ATOM    126  CA  VAL   126      16.472   3.936  39.689  1.00 25.00           C
ATOM    127  CA  LYS   127      13.346   3.619  37.567  1.00 25.00           C
ATOM    128  CA  LEU   128      11.556   6.383  39.425  1.00 25.00           C
ATOM    129  CA  ALA   129       8.272   6.070  37.510  1.00 25.00           C
ATOM    130  CA  VAL   130       5.826   8.571  36.090  1.00 25.00           C
ATOM    131  CA  VAL   131       4.664  11.948  34.644  1.00 25.00           C
ATOM    132  CA  SER   132       1.070  10.872  34.103  1.00 25.00           C
ATOM    133  CA  ASN   133       0.594  14.464  32.825  1.00 25.00           C
ATOM    134  CA  LYS   134       0.736  14.490  36.667  1.00 25.00           C
ATOM    135  CA  PRO   135       1.047  18.233  36.331  1.00 25.00           C
ATOM    136  CA  ASN   136       2.112  21.423  38.168  1.00 25.00           C
ATOM    137  CA  GLU   137       3.006  22.524  41.725  1.00 25.00           C
ATOM    138  CA  ALA   138       2.055  19.064  43.062  1.00 25.00           C
ATOM    139  CA  VAL   139       4.229  17.403  40.382  1.00 25.00           C
ATOM    140  CA  GLN   140       7.164  19.680  41.318  1.00 25.00           C
ATOM    141  CA  VAL   141       6.708  18.788  45.014  1.00 25.00           C
ATOM    142  CA  LEU   142       6.670  15.060  44.136  1.00 25.00           C
ATOM    143  CA  VAL   143       9.876  15.486  42.086  1.00 25.00           C
ATOM    144  CA  GLU   144      11.539  17.305  45.017  1.00 25.00           C
ATOM    145  CA  GLU   145      10.492  14.487  47.391  1.00 25.00           C
ATOM    146  CA  LEU   146      11.931  11.886  44.977  1.00 25.00           C
ATOM    147  CA  PHE   147      15.216  13.846  44.783  1.00 25.00           C
ATOM    148  CA  PRO   148      15.374  14.006  48.606  1.00 25.00           C
ATOM    149  CA  GLY   149      14.773  10.229  48.814  1.00 25.00           C
ATOM    150  CA  SER   150      17.561   9.621  46.260  1.00 25.00           C
ATOM    151  CA  PHE   151      15.856   9.521  42.898  1.00 25.00           C
ATOM    152  CA  ASP   152      13.894  11.269  40.172  1.00 25.00           C
ATOM    153  CA  PHE   153      14.595  14.695  38.632  1.00 25.00           C
ATOM    154  CA  ALA   154      11.153  15.585  37.192  1.00 25.00           C
ATOM    155  CA  LEU   155       8.000  15.751  35.024  1.00 25.00           C
ATOM    156  CA  GLY   156       5.882  18.915  35.075  1.00 25.00           C
ATOM    163  CA  ARG   163       0.210  18.316  25.491  1.00 25.00           C
ATOM    164  CA  LYS   164      -1.623  17.169  28.567  1.00 25.00           C
ATOM    165  CA  PRO   165      -2.653  13.460  28.421  1.00 25.00           C
ATOM    166  CA  ALA   166       0.094  13.311  25.853  1.00 25.00           C
ATOM    167  CA  PRO   167       3.702  12.310  26.493  1.00 25.00           C
ATOM    168  CA  ASP   168       6.106  14.694  24.703  1.00 25.00           C
ATOM    169  CA  MET   169       6.532  16.722  27.924  1.00 25.00           C
ATOM    170  CA  THR   170       7.257  13.510  29.879  1.00 25.00           C
ATOM    171  CA  SER   171       9.855  12.474  27.263  1.00 25.00           C
ATOM    172  CA  GLU   172      11.505  15.922  27.500  1.00 25.00           C
ATOM    173  CA  CYS   173      11.609  15.637  31.318  1.00 25.00           C
ATOM    174  CA  VAL   174      13.200  12.164  31.038  1.00 25.00           C
ATOM    175  CA  LYS   175      15.819  13.532  28.602  1.00 25.00           C
ATOM    176  CA  VAL   176      16.595  16.405  31.012  1.00 25.00           C
ATOM    177  CA  LEU   177      16.983  13.915  33.896  1.00 25.00           C
ATOM    178  CA  GLY   178      20.666  14.095  32.901  1.00 25.00           C
ATOM    179  CA  VAL   179      20.162  10.486  32.072  1.00 25.00           C
ATOM    180  CA  PRO   180      20.378   8.487  28.873  1.00 25.00           C
ATOM    181  CA  ARG   181      17.410   8.933  26.573  1.00 25.00           C
ATOM    182  CA  ASP   182      13.761   7.802  26.850  1.00 25.00           C
ATOM    183  CA  LYS   183      14.846   4.703  28.822  1.00 25.00           C
ATOM    184  CA  CYS   184      12.538   5.962  31.616  1.00 25.00           C
ATOM    185  CA  VAL   185       9.045   4.914  32.654  1.00 25.00           C
ATOM    186  CA  TYR   186       5.308   5.413  32.152  1.00 25.00           C
ATOM    187  CA  ILE   187       3.821   4.277  35.401  1.00 25.00           C
ATOM    188  CA  GLY   188       0.534   5.710  36.520  1.00 25.00           C
ATOM    189  CA  ASP   189      -0.936   2.774  34.603  1.00 25.00           C
ATOM    190  CA  SER   190      -4.133   4.506  33.496  1.00 25.00           C
ATOM    191  CA  GLU   191      -4.720   4.481  29.727  1.00 25.00           C
ATOM    192  CA  ILE   192      -2.934   7.833  29.229  1.00 25.00           C
ATOM    193  CA  ASP   193       0.116   6.520  31.138  1.00 25.00           C
ATOM    194  CA  ILE   194       0.151   3.368  28.963  1.00 25.00           C
ATOM    195  CA  GLN   195      -0.031   5.519  25.800  1.00 25.00           C
ATOM    196  CA  THR   196       2.876   7.668  27.064  1.00 25.00           C
ATOM    197  CA  ALA   197       4.928   4.514  27.779  1.00 25.00           C
ATOM    198  CA  ARG   198       4.188   3.204  24.256  1.00 25.00           C
ATOM    199  CA  ASN   199       5.273   6.557  22.755  1.00 25.00           C
ATOM    200  CA  SER   200       8.141   7.427  25.005  1.00 25.00           C
ATOM    201  CA  GLU   201       9.744   4.394  23.383  1.00 25.00           C
ATOM    202  CA  MET   202      10.394   3.292  27.006  1.00 25.00           C
ATOM    203  CA  ASP   203      11.272   0.953  29.932  1.00 25.00           C
ATOM    204  CA  GLU   204       7.487   0.762  30.242  1.00 25.00           C
ATOM    205  CA  ILE   205       7.341   0.349  34.018  1.00 25.00           C
ATOM    206  CA  ALA   206       4.768  -1.229  36.283  1.00 25.00           C
ATOM    207  CA  VAL   207       2.999   0.790  38.965  1.00 25.00           C
ATOM    208  CA  ASN   208       0.496  -0.305  41.611  1.00 25.00           C
ATOM    209  CA  TRP   209      -2.712  -2.302  41.316  1.00 25.00           C
ATOM    210  CA  GLY   210      -4.305   0.906  42.567  1.00 25.00           C
ATOM    211  CA  PHE   211      -3.910   1.976  38.892  1.00 25.00           C
ATOM    212  CA  ARG   212      -6.227  -0.426  37.069  1.00 25.00           C
ATOM    213  CA  SER   213      -8.495  -3.322  36.056  1.00 25.00           C
ATOM    214  CA  VAL   214      -8.103  -6.030  33.442  1.00 25.00           C
ATOM    215  CA  PRO   215      -8.922  -5.518  29.736  1.00 25.00           C
ATOM    216  CA  PHE   216      -9.204  -1.739  30.295  1.00 25.00           C
ATOM    217  CA  LEU   217      -5.821  -1.729  32.090  1.00 25.00           C
ATOM    218  CA  GLN   218      -4.248  -3.676  29.191  1.00 25.00           C
ATOM    219  CA  LYS   219      -5.711  -1.175  26.685  1.00 25.00           C
ATOM    220  CA  HIS   220      -4.515  -3.747  24.111  1.00 25.00           C
ATOM    221  CA  GLY   221      -1.036  -4.569  25.413  1.00 25.00           C
ATOM    222  CA  ALA   222       1.518  -1.834  26.034  1.00 25.00           C
ATOM    223  CA  THR   223       3.429  -4.037  28.376  1.00 25.00           C
ATOM    224  CA  VAL   224       2.919  -1.617  31.248  1.00 25.00           C
ATOM    225  CA  ILE   225       1.802  -4.290  33.656  1.00 25.00           C
ATOM    226  CA  VAL   226       0.614  -5.438  37.151  1.00 25.00           C
ATOM    227  CA  ASP   227       2.597  -8.485  38.159  1.00 25.00           C
ATOM    228  CA  THR   228       6.033  -6.999  37.992  1.00 25.00           C
ATOM    229  CA  ALA   229       8.180  -4.488  39.966  1.00 25.00           C
ATOM    230  CA  GLU   230       8.198  -7.221  42.650  1.00 25.00           C
ATOM    231  CA  LYS   231       8.127  -4.555  45.399  1.00 25.00           C
ATOM    232  CA  LEU   232       5.179  -2.820  43.675  1.00 25.00           C
ATOM    233  CA  GLU   233       3.320  -6.159  43.439  1.00 25.00           C
ATOM    234  CA  GLU   234       3.959  -6.807  47.160  1.00 25.00           C
ATOM    235  CA  ALA   235       2.643  -3.314  48.019  1.00 25.00           C
ATOM    236  CA  ILE   236      -0.494  -3.952  45.915  1.00 25.00           C
ATOM    237  CA  LEU   237      -3.728  -4.598  47.838  1.00 25.00           C
ATOM    238  CA  GLY   238      -6.392  -2.700  49.860  1.00 25.00           C
ATOM    239  CA  GLU   239      -6.771   0.712  48.119  1.00 25.00           C
TER
END
