
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0330TS168_1-D1
# Molecule2: number of CA atoms  153 ( 1188),  selected  153 , name T0330_D1.pdb
# PARAMETERS: T0330TS168_1-D1.T0330_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   151         4 - 229         4.94     5.16
  LCS_AVERAGE:     98.66

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        94 - 118         1.98     5.99
  LONGEST_CONTINUOUS_SEGMENT:    25       112 - 136         1.99     7.00
  LCS_AVERAGE:     10.44

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        96 - 110         0.89     8.02
  LCS_AVERAGE:      4.91

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     S       2     S       2      3    5  144     1    3    5    7    9   11   14   36   37   47   52   65   73   92  100  108  127  129  135  140 
LCS_GDT     R       3     R       3      3    6  150     3    3    5    7   17   22   36   41   50   65   74   88   99  111  122  129  136  144  148  151 
LCS_GDT     T       4     T       4      5    8  151     4    7   17   27   41   49   58   71   86   97  109  122  131  140  146  148  149  149  150  151 
LCS_GDT     L       5     L       5      5    8  151     4    7   17   32   42   49   60   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     V       6     V       6      5    8  151     4    7   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L       7     L       7      5    8  151     4    7   17   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     F       8     F       8      5    8  151     4    7   17   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D       9     D       9      3    8  151     4    4    7   11   17   24   35   47   67   91  106  122  131  140  146  148  149  149  150  151 
LCS_GDT     I      10     I      10      3    8  151     4    4    5   12   16   24   35   47   63   89  101  118  130  140  146  148  149  149  150  151 
LCS_GDT     D      11     D      11      3    8  151     4    5    8   13   22   37   48   65   82   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G      12     G      12      3    6  151     3    4   17   22   29   41   53   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     T      13     T      13      3    6  151     3    3    4   13   16   30   39   61   79   91  110  122  131  140  146  148  149  149  150  151 
LCS_GDT     L      14     L      14      3    6  151     3    3   10   12   29   41   50   63   78   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L      15     L      15      3    6  151     3    3    4   14   21   40   46   60   71   88  105  117  131  140  146  148  149  149  150  151 
LCS_GDT     K      16     K      16      4    6  151     3    3    9   14   29   40   50   60   71   88  107  120  131  140  146  148  149  149  150  151 
LCS_GDT     T      92     T      92      5   20  151     3    6   14   23   33   43   58   72   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L      93     L      93      5   23  151     3    6   17   28   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L      94     L      94      5   25  151     3   10   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E      95     E      95      5   25  151     3    7   17   28   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G      96     G      96     15   25  151    10   12   18   27   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     V      97     V      97     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R      98     R      98     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E      99     E      99     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     100     L     100     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     101     L     101     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     102     D     102     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     103     A     103     15   25  151    10   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     104     L     104     15   25  151    10   12   17   31   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     105     S     105     15   25  151     8   12   17   28   43   49   63   73   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     106     S     106     15   25  151     7   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     107     R     107     15   25  151     4   12   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     108     S     108     15   25  151     4   12   17   32   43   49   63   73   86   96  110  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     109     D     109     15   25  151     4   12   16   21   36   48   63   70   82   92  107  122  131  138  146  148  149  149  150  151 
LCS_GDT     V     110     V     110     15   25  151     4   10   17   28   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     111     L     111      4   25  151     4    7   16   28   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     112     L     112      5   25  151     4    9   13   24   33   46   60   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     113     G     113      5   25  151     3    6   17   27   41   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     114     L     114      5   25  151     3    8   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     115     L     115      5   25  151     3    5    8   25   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     T     116     T     116      6   25  151     4    5   10   20   28   47   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     117     G     117      6   25  151     4    7   17   28   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     N     118     N     118      6   25  151     4    7   17   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     F     119     F     119     12   25  151     4    6   14   21   38   47   60   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E     120     E     120     12   25  151     3   10   19   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     121     A     121     12   25  151     8   10   17   32   42   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     122     S     122     12   25  151     8   10   15   24   33   46   59   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     123     G     123     12   25  151     8   10   17   24   33   45   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     124     R     124     12   25  151     8   10   17   23   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     H     125     H     125     12   25  151     8   10   17   24   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     K     126     K     126     12   25  151     8   10   17   23   33   42   56   69   85   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     127     L     127     12   25  151     8   10   17   23   32   42   53   68   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     K     128     K     128     12   25  151     8   10   14   23   32   42   57   68   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     129     L     129     12   25  151     4   10   17   23   33   42   56   68   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     P     130     P     130     12   25  151     4    8   17   23   33   43   56   72   85   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     131     G     131      6   25  151     4    6   17   24   33   43   56   70   85   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     132     I     132      6   25  151     4    6   17   24   33   43   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     133     D     133      5   25  151     4    5    7   13   24   34   50   62   80   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     H     134     H     134      3   25  151     3    3   14   23   33   42   56   67   82   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     Y     135     Y     135      3   25  151     6    9   14   24   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     F     136     F     136      3   25  151     0    5    9   18   29   42   57   71   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     P     137     P     137      3   22  151     1    4    9   20   37   48   60   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     F     138     F     138      3    9  151     3    4   11   29   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     139     G     139      3    9  151     3    5   19   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     140     A     140      3    9  151     3    3   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     F     141     F     141      3    9  151     3    3    7   20   30   42   55   69   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     142     A     142      4    9  151     3    3    4    5    8    9   16   23   33   51   67   81   93  118  125  136  146  149  150  151 
LCS_GDT     D     143     D     143      4    9  151     3    4    5    6    8    9   12   13   16   19   43   56   63   77  103  118  136  144  146  151 
LCS_GDT     D     144     D     144      4    9  151     3    4    5    6   17   21   31   42   57   79   91  109  120  139  146  148  149  149  150  151 
LCS_GDT     A     145     A     145      4    9  151     3    6   14   20   33   45   56   68   84   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     146     L     146      3    6  151     0    3    4   11   21   32   58   69   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     147     D     147      3    6  151    10   12   17   23   30   44   50   67   79   93  110  120  131  140  146  148  149  149  150  151 
LCS_GDT     R     148     R     148      5    6  151     3    4    5    9   11   22   29   36   65   79   96  114  131  140  146  148  149  149  150  151 
LCS_GDT     N     149     N     149      5    5  151     3    4    7   13   22   33   46   60   75   90  105  120  131  140  146  148  149  149  150  151 
LCS_GDT     E     150     E     150      5    5  151     3    4    6   14   22   37   51   61   78   93  108  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     151     L     151      5   13  151     3    4    9   14   24   34   40   47   61   86   97  114  127  140  146  148  149  149  150  151 
LCS_GDT     P     152     P     152     11   13  151     3    4    9   16   24   34   41   58   74   91  108  121  131  140  146  148  149  149  150  151 
LCS_GDT     H     153     H     153     11   13  151    10   10   15   24   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     154     I     154     11   13  151    10   10   14   21   30   42   57   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     155     A     155     11   13  151    10   10   14   23   31   41   54   70   85   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     156     L     156     11   13  151    10   10   10   13   19   33   52   68   81   97  111  122  131  140  146  148  149  149  150  151 
LCS_GDT     E     157     E     157     11   13  151    10   10   12   20   29   44   58   68   84   97  111  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     158     R     158     11   13  151    10   10   12   24   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     159     A     159     11   13  151    10   10   10   11   17   35   54   68   81   97  111  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     160     R     160     11   13  151    10   10   10   11   13   15   21   33   56   69   91  109  117  135  145  148  149  149  150  151 
LCS_GDT     R     161     R     161     11   13  151    10   10   10   11   14   30   39   65   79   88  103  111  126  138  145  148  149  149  150  151 
LCS_GDT     M     162     M     162     11   13  151    10   10   10   11   14   24   52   67   79   97  107  122  131  140  146  148  149  149  150  151 
LCS_GDT     T     163     T     163      5   13  151     3    4   13   24   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     164     G     164      5   13  151     3    4    5   11   31   49   58   71   86   97  109  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     165     A     165      5    9  151     3    4    5   11   29   44   58   67   85   97  106  122  131  140  146  148  149  149  150  151 
LCS_GDT     N     166     N     166      5   13  151     3   10   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     Y     167     Y     167      5   19  151     4   11   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     168     S     168      4   21  151     3    7   10   25   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     P     169     P     169      4   21  151     3    7   11   25   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     170     S     170      4   21  151     3    7   13   25   33   47   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     Q     171     Q     171      4   21  151     3    4   12   23   38   49   60   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     172     I     172      3   21  151     3    3   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     V     173     V     173      4   21  151     3    9   17   25   36   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     174     I     174      4   21  151     3   10   17   27   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     175     I     175      4   21  151     3    6   16   25   41   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     176     G     176     11   21  151     4   11   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     177     D     177     11   21  151     3   12   17   23   31   45   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     T     178     T     178     11   21  151     3   11   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E     179     E     179     11   21  151     7   10   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     H     180     H     180     11   21  151     7   11   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     181     D     181     11   21  151     7   10   20   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     182     I     182     11   21  151     7   11   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     183     R     183     11   21  151     7   11   21   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     C     184     C     184     11   21  151     7   11   20   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     185     A     185     11   21  151     7   10   19   32   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     186     R     186     11   21  151     6    9   18   28   42   49   59   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E     187     E     187     11   21  151     4    9   14   24   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     188     L     188      4   21  151     3    4   15   24   33   46   58   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     D     189     D     189      3   18  151     3    7   11   23   34   48   54   67   81   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     190     A     190      3   18  151     3    7   11   25   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     191     R     191      7    9  151     2    4   10   23   31   41   53   70   85   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     192     S     192      7    9  151     4    6   13   23   31   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     I     193     I     193      7    9  151     5    6    8   20   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     194     A     194      7    9  151     5    6   10   21   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     V     195     V     195      7    9  151     5    6    8   17   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     196     A     196      7    9  151     5    6    8   19   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     T     197     T     197      7    9  151     5    6    8   17   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     198     G     198      3    8  151     3    4    5   10   31   41   53   64   82   94  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     N     199     N     199      3    8  151     3    4    5    8   17   22   29   55   63   84   99  111  128  140  146  148  149  149  150  151 
LCS_GDT     F     200     F     200      3    8  151     3    4   12   14   16   26   42   55   63   78   95  104  121  133  146  148  149  149  150  151 
LCS_GDT     T     201     T     201      3    8  151     3    3    7   17   29   41   51   67   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     M     202     M     202      6   11  151     5   11   17   25   36   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E     203     E     203      6   11  151     5    6   13   19   36   48   58   71   83   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     E     204     E     204      6   11  151     5    6    7   17   25   33   50   66   79   95  112  120  131  140  146  148  149  149  150  151 
LCS_GDT     L     205     L     205      6   11  151     5    6   11   21   29   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     206     A     206      6   11  151     5    6   11   23   32   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     R     207     R     207      6   11  151     3    6   10   17   25   34   58   69   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     H     208     H     208      3   11  151     3    3   10   19   28   41   58   69   82   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     K     209     K     209      3   11  151     3    3    9   15   25   48   58   70   84   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     P     210     P     210      3   11  151     3    5   13   19   31   48   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     G     211     G     211      3   11  151     3    3   13   27   43   49   63   74   86   97  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     T     212     T     212      3   11  151     4    5    6   15   24   34   45   61   80   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     L     213     L     213      3   10  151     4    5    8    9   19   34   41   52   68   85  106  120  131  140  146  148  149  149  150  151 
LCS_GDT     F     214     F     214      5   10  151     4    5    8    9   20   34   39   47   55   75   94  111  125  138  146  148  149  149  150  151 
LCS_GDT     K     215     K     215      5    6  151     3    5    6   15   23   40   50   64   76   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     N     216     N     216      5    6  151     3    6   15   23   31   41   53   66   82   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     F     217     F     217      5    6  151     3    5   15   23   31   41   53   66   82   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     A     218     A     218      5   12  151     3    5    7   10   31   41   51   64   75   88  102  114  129  140  146  148  149  149  150  151 
LCS_GDT     E     219     E     219     11   12  151     9   11   11   11   16   28   49   64   77   91  108  121  131  140  146  148  149  149  150  151 
LCS_GDT     T     220     T     220     11   12  151     9   11   11   11   11   13   24   38   64   78   89  107  124  138  146  148  149  149  150  151 
LCS_GDT     D     221     D     221     11   12  151     9   11   11   11   22   33   50   64   77   94  108  121  131  140  146  148  149  149  150  151 
LCS_GDT     E     222     E     222     11   12  151     9   11   11   23   31   41   53   67   82   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     V     223     V     223     11   12  151     9   11   11   11   16   24   32   55   71   89  102  116  130  140  146  148  149  149  150  151 
LCS_GDT     L     224     L     224     11   12  151     9   11   11   11   17   24   42   60   75   89  102  117  130  140  146  148  149  149  150  151 
LCS_GDT     A     225     A     225     11   12  151     9   11   11   21   31   41   53   67   82   96  112  122  131  140  146  148  149  149  150  151 
LCS_GDT     S     226     S     226     11   12  151     9   11   11   11   11   11   21   43   53   79  100  114  130  140  146  148  149  149  150  151 
LCS_GDT     I     227     I     227     11   12  151     9   11   11   11   11   11   17   24   30   49   65   83  109  127  144  148  149  149  150  151 
LCS_GDT     L     228     L     228     11   12  151     8   11   11   11   11   13   29   48   68   80  100  114  130  140  146  148  149  149  150  151 
LCS_GDT     T     229     T     229     11   12  151     3   11   11   11   11   11   11   29   50   63   85  106  121  140  146  148  149  149  150  151 
LCS_AVERAGE  LCS_A:  38.00  (   4.91   10.44   98.66 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     12     21     32     43     49     63     74     86     97    112    122    131    140    146    148    149    149    150    151 
GDT PERCENT_CA   6.54   7.84  13.73  20.92  28.10  32.03  41.18  48.37  56.21  63.40  73.20  79.74  85.62  91.50  95.42  96.73  97.39  97.39  98.04  98.69
GDT RMS_LOCAL    0.17   0.43   1.10   1.40   1.78   1.91   2.49   2.89   3.11   3.46   3.87   4.07   4.28   4.56   4.72   4.78   4.81   4.81   4.86   4.95
GDT RMS_ALL_CA  20.15   7.64   6.17   6.14   5.96   6.03   5.74   5.50   5.51   5.46   5.21   5.20   5.19   5.17   5.17   5.16   5.16   5.16   5.16   5.15

#      Molecule1      Molecule2       DISTANCE
LGA    S       2      S       2         13.248
LGA    R       3      R       3         10.324
LGA    T       4      T       4          4.940
LGA    L       5      L       5          4.069
LGA    V       6      V       6          3.187
LGA    L       7      L       7          3.336
LGA    F       8      F       8          2.749
LGA    D       9      D       9          6.678
LGA    I      10      I      10          7.896
LGA    D      11      D      11          6.178
LGA    G      12      G      12          4.306
LGA    T      13      T      13          5.662
LGA    L      14      L      14          5.763
LGA    L      15      L      15          7.558
LGA    K      16      K      16          7.314
LGA    T      92      T      92          4.654
LGA    L      93      L      93          1.092
LGA    L      94      L      94          1.842
LGA    E      95      E      95          2.186
LGA    G      96      G      96          2.115
LGA    V      97      V      97          2.010
LGA    R      98      R      98          2.698
LGA    E      99      E      99          2.526
LGA    L     100      L     100          2.242
LGA    L     101      L     101          2.968
LGA    D     102      D     102          3.271
LGA    A     103      A     103          2.820
LGA    L     104      L     104          3.378
LGA    S     105      S     105          4.243
LGA    S     106      S     106          3.914
LGA    R     107      R     107          3.755
LGA    S     108      S     108          4.581
LGA    D     109      D     109          5.460
LGA    V     110      V     110          2.576
LGA    L     111      L     111          1.930
LGA    L     112      L     112          2.683
LGA    G     113      G     113          2.188
LGA    L     114      L     114          1.872
LGA    L     115      L     115          3.226
LGA    T     116      T     116          4.345
LGA    G     117      G     117          2.939
LGA    N     118      N     118          2.045
LGA    F     119      F     119          3.707
LGA    E     120      E     120          2.037
LGA    A     121      A     121          2.117
LGA    S     122      S     122          3.245
LGA    G     123      G     123          3.852
LGA    R     124      R     124          3.538
LGA    H     125      H     125          3.868
LGA    K     126      K     126          5.372
LGA    L     127      L     127          5.745
LGA    K     128      K     128          5.562
LGA    L     129      L     129          6.139
LGA    P     130      P     130          5.086
LGA    G     131      G     131          5.387
LGA    I     132      I     132          4.258
LGA    D     133      D     133          6.705
LGA    H     134      H     134          6.153
LGA    Y     135      Y     135          3.525
LGA    F     136      F     136          4.519
LGA    P     137      P     137          3.599
LGA    F     138      F     138          3.499
LGA    G     139      G     139          2.494
LGA    A     140      A     140          2.394
LGA    F     141      F     141          4.686
LGA    A     142      A     142         10.259
LGA    D     143      D     143         12.297
LGA    D     144      D     144          8.385
LGA    A     145      A     145          5.250
LGA    L     146      L     146          5.341
LGA    D     147      D     147          6.344
LGA    R     148      R     148          6.395
LGA    N     149      N     149          6.484
LGA    E     150      E     150          6.337
LGA    L     151      L     151          6.963
LGA    P     152      P     152          6.215
LGA    H     153      H     153          3.859
LGA    I     154      I     154          3.992
LGA    A     155      A     155          4.469
LGA    L     156      L     156          5.325
LGA    E     157      E     157          5.192
LGA    R     158      R     158          3.873
LGA    A     159      A     159          5.296
LGA    R     160      R     160          7.533
LGA    R     161      R     161          7.001
LGA    M     162      M     162          5.621
LGA    T     163      T     163          3.022
LGA    G     164      G     164          4.813
LGA    A     165      A     165          5.111
LGA    N     166      N     166          3.833
LGA    Y     167      Y     167          2.154
LGA    S     168      S     168          3.384
LGA    P     169      P     169          2.989
LGA    S     170      S     170          2.654
LGA    Q     171      Q     171          2.756
LGA    I     172      I     172          3.523
LGA    V     173      V     173          2.774
LGA    I     174      I     174          1.973
LGA    I     175      I     175          2.534
LGA    G     176      G     176          1.672
LGA    D     177      D     177          3.927
LGA    T     178      T     178          1.622
LGA    E     179      E     179          1.084
LGA    H     180      H     180          0.275
LGA    D     181      D     181          0.706
LGA    I     182      I     182          0.733
LGA    R     183      R     183          1.240
LGA    C     184      C     184          1.367
LGA    A     185      A     185          1.886
LGA    R     186      R     186          3.017
LGA    E     187      E     187          4.069
LGA    L     188      L     188          3.518
LGA    D     189      D     189          5.406
LGA    A     190      A     190          3.470
LGA    R     191      R     191          4.631
LGA    S     192      S     192          3.573
LGA    I     193      I     193          3.651
LGA    A     194      A     194          3.659
LGA    V     195      V     195          3.585
LGA    A     196      A     196          3.809
LGA    T     197      T     197          3.362
LGA    G     198      G     198          7.297
LGA    N     199      N     199          9.754
LGA    F     200      F     200         10.139
LGA    T     201      T     201          6.193
LGA    M     202      M     202          3.365
LGA    E     203      E     203          4.803
LGA    E     204      E     204          6.499
LGA    L     205      L     205          4.218
LGA    A     206      A     206          3.572
LGA    R     207      R     207          5.780
LGA    H     208      H     208          5.773
LGA    K     209      K     209          5.077
LGA    P     210      P     210          3.857
LGA    G     211      G     211          3.543
LGA    T     212      T     212          6.102
LGA    L     213      L     213          7.082
LGA    F     214      F     214          7.612
LGA    K     215      K     215          6.614
LGA    N     216      N     216          6.589
LGA    F     217      F     217          7.085
LGA    A     218      A     218         10.339
LGA    E     219      E     219          8.017
LGA    T     220      T     220          9.035
LGA    D     221      D     221          7.612
LGA    E     222      E     222          7.044
LGA    V     223      V     223          8.935
LGA    L     224      L     224          8.662
LGA    A     225      A     225          7.226
LGA    S     226      S     226          8.946
LGA    I     227      I     227         10.257
LGA    L     228      L     228          8.891
LGA    T     229      T     229          9.073

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0     74    2.89    43.464    37.000     2.474

LGA_LOCAL      RMSD =  2.891  Number of atoms =   74  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.359  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  5.151  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.556713 * X  +   0.691235 * Y  +  -0.460723 * Z  +  20.169827
  Y_new =  -0.777281 * X  +  -0.237767 * Y  +   0.582496 * Z  +  41.491756
  Z_new =   0.293097 * X  +   0.682394 * Y  +   0.669651 * Z  +  18.656033 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.794822   -2.346770  [ DEG:    45.5400   -134.4600 ]
  Theta =  -0.297464   -2.844128  [ DEG:   -17.0435   -162.9565 ]
  Phi   =  -2.192333    0.949260  [ DEG:  -125.6114     54.3886 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0330TS168_1-D1                               
REMARK     2: T0330_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0330TS168_1-D1.T0330_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0   74   2.89  37.000     5.15
REMARK  ---------------------------------------------------------- 
MOLECULE T0330TS168_1-D1
PFRMAT TS
TARGET T0330
MODEL 1
PARENT N/A
ATOM      2  CA  SER     2      18.970  44.874  37.983  1.00 25.00           C
ATOM      3  CA  ARG     3      21.206  47.877  37.184  1.00 25.00           C
ATOM      4  CA  THR     4      21.871  50.309  34.301  1.00 25.00           C
ATOM      5  CA  LEU     5      21.149  51.476  30.766  1.00 25.00           C
ATOM      6  CA  VAL     6      20.895  48.230  28.818  1.00 25.00           C
ATOM      7  CA  LEU     7      21.261  47.191  25.213  1.00 25.00           C
ATOM      8  CA  PHE     8      20.828  43.960  23.275  1.00 25.00           C
ATOM      9  CA  ASP     9      22.709  40.857  24.581  1.00 25.00           C
ATOM     10  CA  ILE    10      19.664  38.609  23.971  1.00 25.00           C
ATOM     11  CA  ASP    11      19.994  36.451  20.900  1.00 25.00           C
ATOM     12  CA  GLY    12      18.963  39.740  19.266  1.00 25.00           C
ATOM     13  CA  THR    13      18.011  43.406  18.998  1.00 25.00           C
ATOM     14  CA  LEU    14      15.429  45.331  21.064  1.00 25.00           C
ATOM     15  CA  LEU    15      12.149  43.565  20.731  1.00 25.00           C
ATOM     16  CA  LYS    16      13.243  40.952  18.268  1.00 25.00           C
ATOM     92  CA  THR    92       9.516  37.597  17.653  1.00 25.00           C
ATOM     93  CA  LEU    93      11.351  35.838  20.444  1.00 25.00           C
ATOM     94  CA  LEU    94      14.084  33.476  21.807  1.00 25.00           C
ATOM     95  CA  GLU    95      12.938  33.086  25.447  1.00 25.00           C
ATOM     96  CA  GLY    96      15.367  35.467  27.021  1.00 25.00           C
ATOM     97  CA  VAL    97      14.009  37.932  24.399  1.00 25.00           C
ATOM     98  CA  ARG    98      10.261  38.603  24.814  1.00 25.00           C
ATOM     99  CA  GLU    99      10.643  38.518  28.624  1.00 25.00           C
ATOM    100  CA  LEU   100      13.571  40.976  28.409  1.00 25.00           C
ATOM    101  CA  LEU   101      11.485  43.306  26.198  1.00 25.00           C
ATOM    102  CA  ASP   102       8.595  43.137  28.704  1.00 25.00           C
ATOM    103  CA  ALA   103      10.997  43.966  31.569  1.00 25.00           C
ATOM    104  CA  LEU   104      12.367  46.945  29.591  1.00 25.00           C
ATOM    105  CA  SER   105       8.802  48.182  28.937  1.00 25.00           C
ATOM    106  CA  SER   106       7.983  47.871  32.665  1.00 25.00           C
ATOM    107  CA  ARG   107      11.146  49.842  33.548  1.00 25.00           C
ATOM    108  CA  SER   108      10.175  53.497  33.948  1.00 25.00           C
ATOM    109  CA  ASP   109      12.895  55.124  31.844  1.00 25.00           C
ATOM    110  CA  VAL   110      15.869  53.979  29.875  1.00 25.00           C
ATOM    111  CA  LEU   111      16.657  55.448  26.477  1.00 25.00           C
ATOM    112  CA  LEU   112      19.757  53.546  25.272  1.00 25.00           C
ATOM    113  CA  GLY   113      20.937  51.579  22.216  1.00 25.00           C
ATOM    114  CA  LEU   114      20.670  48.486  19.920  1.00 25.00           C
ATOM    115  CA  LEU   115      21.788  46.878  16.649  1.00 25.00           C
ATOM    116  CA  THR   116      22.432  43.127  16.659  1.00 25.00           C
ATOM    117  CA  GLY   117      24.733  43.852  13.745  1.00 25.00           C
ATOM    118  CA  ASN   118      21.727  45.010  11.694  1.00 25.00           C
ATOM    119  CA  PHE   119      21.830  48.732  10.984  1.00 25.00           C
ATOM    120  CA  GLU   120      18.513  50.470  11.745  1.00 25.00           C
ATOM    121  CA  ALA   121      15.121  50.378   9.969  1.00 25.00           C
ATOM    122  CA  SER   122      14.546  46.798  11.202  1.00 25.00           C
ATOM    123  CA  GLY   123      15.424  47.861  14.775  1.00 25.00           C
ATOM    124  CA  ARG   124      12.979  50.798  14.527  1.00 25.00           C
ATOM    125  CA  HIS   125      10.236  48.443  13.267  1.00 25.00           C
ATOM    126  CA  LYS   126      10.918  46.050  16.179  1.00 25.00           C
ATOM    127  CA  LEU   127      10.710  48.965  18.654  1.00 25.00           C
ATOM    128  CA  LYS   128       7.386  50.072  17.109  1.00 25.00           C
ATOM    129  CA  LEU   129       6.034  46.500  17.396  1.00 25.00           C
ATOM    130  CA  PRO   130       6.732  44.318  20.492  1.00 25.00           C
ATOM    131  CA  GLY   131       5.903  46.649  23.429  1.00 25.00           C
ATOM    132  CA  ILE   132       9.516  47.848  23.648  1.00 25.00           C
ATOM    133  CA  ASP   133       8.377  51.517  23.614  1.00 25.00           C
ATOM    134  CA  HIS   134      11.161  53.872  24.785  1.00 25.00           C
ATOM    135  CA  TYR   135      13.202  50.879  26.029  1.00 25.00           C
ATOM    136  CA  PHE   136      16.437  49.739  24.386  1.00 25.00           C
ATOM    137  CA  PRO   137      15.174  52.580  22.181  1.00 25.00           C
ATOM    138  CA  PHE   138      14.345  53.110  18.537  1.00 25.00           C
ATOM    139  CA  GLY   139      17.932  52.249  17.789  1.00 25.00           C
ATOM    140  CA  ALA   140      21.565  52.219  16.710  1.00 25.00           C
ATOM    141  CA  PHE   141      25.209  52.231  15.738  1.00 25.00           C
ATOM    142  CA  ALA   142      25.539  50.096  18.918  1.00 25.00           C
ATOM    143  CA  ASP   143      27.269  47.365  16.848  1.00 25.00           C
ATOM    144  CA  ASP   144      27.799  48.276  13.194  1.00 25.00           C
ATOM    145  CA  ALA   145      29.696  51.605  13.188  1.00 25.00           C
ATOM    146  CA  LEU   146      27.317  52.909  10.512  1.00 25.00           C
ATOM    147  CA  ASP   147      27.450  52.541   6.756  1.00 25.00           C
ATOM    148  CA  ARG   148      30.824  50.693   6.992  1.00 25.00           C
ATOM    149  CA  ASN   149      31.680  47.866   9.377  1.00 25.00           C
ATOM    150  CA  GLU   150      34.655  48.800  11.564  1.00 25.00           C
ATOM    151  CA  LEU   151      34.637  52.605  12.182  1.00 25.00           C
ATOM    152  CA  PRO   152      34.050  51.781  15.855  1.00 25.00           C
ATOM    153  CA  HIS   153      33.117  55.296  16.911  1.00 25.00           C
ATOM    154  CA  ILE   154      31.139  58.558  16.575  1.00 25.00           C
ATOM    155  CA  ALA   155      27.947  56.576  15.833  1.00 25.00           C
ATOM    156  CA  LEU   156      28.567  54.382  18.910  1.00 25.00           C
ATOM    157  CA  GLU   157      29.076  57.505  21.067  1.00 25.00           C
ATOM    158  CA  ARG   158      25.813  58.994  19.724  1.00 25.00           C
ATOM    159  CA  ALA   159      23.969  55.732  20.517  1.00 25.00           C
ATOM    160  CA  ARG   160      25.405  55.755  24.067  1.00 25.00           C
ATOM    161  CA  ARG   161      24.283  59.388  24.524  1.00 25.00           C
ATOM    162  CA  MET   162      20.769  58.483  23.298  1.00 25.00           C
ATOM    163  CA  THR   163      18.942  61.374  24.931  1.00 25.00           C
ATOM    164  CA  GLY   164      20.235  61.580  28.489  1.00 25.00           C
ATOM    165  CA  ALA   165      22.115  58.390  29.262  1.00 25.00           C
ATOM    166  CA  ASN   166      24.717  60.680  30.853  1.00 25.00           C
ATOM    167  CA  TYR   167      27.331  57.975  31.184  1.00 25.00           C
ATOM    168  CA  SER   168      29.143  60.002  28.454  1.00 25.00           C
ATOM    169  CA  PRO   169      31.137  56.859  27.733  1.00 25.00           C
ATOM    170  CA  SER   170      31.291  55.152  31.171  1.00 25.00           C
ATOM    171  CA  GLN   171      28.425  52.770  30.226  1.00 25.00           C
ATOM    172  CA  ILE   172      26.096  49.895  29.498  1.00 25.00           C
ATOM    173  CA  VAL   173      25.249  50.177  25.772  1.00 25.00           C
ATOM    174  CA  ILE   174      25.802  47.629  23.047  1.00 25.00           C
ATOM    175  CA  ILE   175      25.911  44.014  21.926  1.00 25.00           C
ATOM    176  CA  GLY   176      26.000  40.489  20.456  1.00 25.00           C
ATOM    177  CA  ASP   177      25.595  39.094  16.906  1.00 25.00           C
ATOM    178  CA  THR   178      29.126  37.660  17.283  1.00 25.00           C
ATOM    179  CA  GLU   179      32.438  39.165  18.408  1.00 25.00           C
ATOM    180  CA  HIS   180      32.293  42.456  16.454  1.00 25.00           C
ATOM    181  CA  ASP   181      30.428  44.124  19.353  1.00 25.00           C
ATOM    182  CA  ILE   182      33.064  42.841  21.818  1.00 25.00           C
ATOM    183  CA  ARG   183      35.857  44.205  19.582  1.00 25.00           C
ATOM    184  CA  CYS   184      34.096  47.601  19.412  1.00 25.00           C
ATOM    185  CA  ALA   185      33.758  47.645  23.226  1.00 25.00           C
ATOM    186  CA  ARG   186      37.480  46.821  23.590  1.00 25.00           C
ATOM    187  CA  GLU   187      38.368  49.651  21.167  1.00 25.00           C
ATOM    188  CA  LEU   188      35.785  52.423  21.656  1.00 25.00           C
ATOM    189  CA  ASP   189      33.597  55.377  22.836  1.00 25.00           C
ATOM    190  CA  ALA   190      31.293  52.760  24.394  1.00 25.00           C
ATOM    191  CA  ARG   191      33.370  51.539  27.361  1.00 25.00           C
ATOM    192  CA  SER   192      30.882  48.679  27.666  1.00 25.00           C
ATOM    193  CA  ILE   193      28.223  46.015  27.117  1.00 25.00           C
ATOM    194  CA  ALA   194      29.553  42.909  25.435  1.00 25.00           C
ATOM    195  CA  VAL   195      27.092  40.073  25.237  1.00 25.00           C
ATOM    196  CA  ALA   196      28.201  36.737  23.663  1.00 25.00           C
ATOM    197  CA  THR   197      24.863  35.815  22.194  1.00 25.00           C
ATOM    198  CA  GLY   198      23.176  34.990  25.496  1.00 25.00           C
ATOM    199  CA  ASN   199      25.858  32.373  26.229  1.00 25.00           C
ATOM    200  CA  PHE   200      27.356  35.025  28.392  1.00 25.00           C
ATOM    201  CA  THR   201      30.683  33.870  27.020  1.00 25.00           C
ATOM    202  CA  MET   202      32.530  33.729  23.723  1.00 25.00           C
ATOM    203  CA  GLU   203      36.168  34.351  24.743  1.00 25.00           C
ATOM    204  CA  GLU   204      36.045  37.831  23.149  1.00 25.00           C
ATOM    205  CA  LEU   205      32.799  38.604  25.027  1.00 25.00           C
ATOM    206  CA  ALA   206      34.398  37.459  28.314  1.00 25.00           C
ATOM    207  CA  ARG   207      37.439  39.688  27.639  1.00 25.00           C
ATOM    208  CA  HIS   208      39.005  43.108  26.893  1.00 25.00           C
ATOM    209  CA  LYS   209      35.588  44.527  27.724  1.00 25.00           C
ATOM    210  CA  PRO   210      32.184  43.804  29.258  1.00 25.00           C
ATOM    211  CA  GLY   211      30.290  43.073  32.410  1.00 25.00           C
ATOM    212  CA  THR   212      27.434  45.490  32.082  1.00 25.00           C
ATOM    213  CA  LEU   213      25.425  42.850  30.225  1.00 25.00           C
ATOM    214  CA  PHE   214      22.142  41.865  28.582  1.00 25.00           C
ATOM    215  CA  LYS   215      23.133  38.376  29.764  1.00 25.00           C
ATOM    216  CA  ASN   216      20.055  38.661  31.882  1.00 25.00           C
ATOM    217  CA  PHE   217      19.120  41.889  33.642  1.00 25.00           C
ATOM    218  CA  ALA   218      19.294  41.669  37.462  1.00 25.00           C
ATOM    219  CA  GLU   219      22.982  40.654  37.259  1.00 25.00           C
ATOM    220  CA  THR   220      23.694  43.611  34.931  1.00 25.00           C
ATOM    221  CA  ASP   221      21.926  45.983  37.364  1.00 25.00           C
ATOM    222  CA  GLU   222      23.995  44.586  40.268  1.00 25.00           C
ATOM    223  CA  VAL   223      27.210  45.083  38.248  1.00 25.00           C
ATOM    224  CA  LEU   224      26.191  48.691  37.468  1.00 25.00           C
ATOM    225  CA  ALA   225      25.496  49.325  41.180  1.00 25.00           C
ATOM    226  CA  SER   226      28.924  47.881  42.093  1.00 25.00           C
ATOM    227  CA  ILE   227      30.595  50.132  39.485  1.00 25.00           C
ATOM    228  CA  LEU   228      28.753  53.178  40.899  1.00 25.00           C
ATOM    229  CA  THR   229      28.952  53.701  44.699  1.00 25.00           C
TER
END
