
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0330TS168_2-D1
# Molecule2: number of CA atoms  153 ( 1188),  selected  153 , name T0330_D1.pdb
# PARAMETERS: T0330TS168_2-D1.T0330_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   150         5 - 229         4.95     5.47
  LCS_AVERAGE:     97.55

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24       165 - 188         1.97     6.30
  LONGEST_CONTINUOUS_SEGMENT:    24       166 - 189         1.97     6.25
  LONGEST_CONTINUOUS_SEGMENT:    24       167 - 190         1.98     6.28
  LCS_AVERAGE:      9.63

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11        97 - 107         0.52    10.59
  LONGEST_CONTINUOUS_SEGMENT:    11       152 - 162         0.48    13.84
  LONGEST_CONTINUOUS_SEGMENT:    11       177 - 187         0.64     6.10
  LONGEST_CONTINUOUS_SEGMENT:    11       219 - 229         0.78    20.20
  LCS_AVERAGE:      4.43

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     S       2     S       2      3    5   76     0    2    4    4    8   10   13   20   24   30   36   41   47   52   57   72   82   94   99  111 
LCS_GDT     R       3     R       3      3    5  112     3    3    4    4    7   11   19   22   30   40   45   51   57   67   75   82  102  116  127  134 
LCS_GDT     T       4     T       4      3   13  148     3    3    4   11   20   26   30   38   50   55   69   78   90  103  115  125  140  147  151  151 
LCS_GDT     L       5     L       5      3   15  150     3    4   10   16   21   26   31   41   53   69   84   97  109  122  137  147  150  150  151  151 
LCS_GDT     V       6     V       6      3   15  150     3    5   10   16   21   26   36   48   68   78   99  108  123  136  142  147  150  150  151  151 
LCS_GDT     L       7     L       7      3   15  150     3    5    9   14   20   26   31   41   56   75   90  107  123  136  142  147  150  150  151  151 
LCS_GDT     F       8     F       8      3   15  150     3    5    8   13   21   31   39   57   79   96  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D       9     D       9      6   15  150     3    5    6   15   31   54   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I      10     I      10      6   15  150     3    5   15   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D      11     D      11      6   15  150     3    5   21   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G      12     G      12      6   15  150     3   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T      13     T      13      6   15  150     3    5   10   16   27   46   60   79   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L      14     L      14      6   15  150     3    5   11   31   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L      15     L      15      3   15  150     3    5   11   19   33   47   59   74   88   97  103  114  127  136  142  147  150  150  151  151 
LCS_GDT     K      16     K      16      3   15  150     0    3   12   22   33   47   62   76   89   97  103  114  127  136  142  147  150  150  151  151 
LCS_GDT     T      92     T      92      5   16  150     3    4    7   11   21   32   44   55   70   81   90  100  116  130  141  147  150  150  151  151 
LCS_GDT     L      93     L      93      5   17  150     3    4   11   18   33   44   59   67   88   97  103  114  127  136  142  147  150  150  151  151 
LCS_GDT     L      94     L      94      5   17  150     3    4   10   18   30   44   58   70   88   97  103  114  127  136  142  147  150  150  151  151 
LCS_GDT     E      95     E      95      5   17  150     3    4    8   22   37   49   59   74   88   97  103  114  127  136  142  147  150  150  151  151 
LCS_GDT     G      96     G      96      5   17  150     3    4    5    7   31   40   54   67   77   93   99  108  121  132  142  147  150  150  151  151 
LCS_GDT     V      97     V      97     11   17  150     8   11   19   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R      98     R      98     11   17  150     8   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E      99     E      99     11   17  150     8   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     100     L     100     11   17  150     8   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     101     L     101     11   17  150     8   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     102     D     102     11   17  150     8   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     103     A     103     11   17  150     8   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     104     L     104     11   17  150     8   11   12   32   43   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     105     S     105     11   17  150     8   11   12   22   33   57   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     106     S     106     11   17  150     8   11   13   28   44   57   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     107     R     107     11   17  150     5   11   20   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     108     S     108      4   17  150     3    5   14   23   44   57   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     109     D     109      4   17  150     3    4   13   21   43   54   72   80   88   96  103  114  123  133  142  147  150  150  151  151 
LCS_GDT     V     110     V     110      4   17  150     3   10   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     111     L     111      5   11  150     3    4   11   16   28   34   53   70   86   96  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     112     L     112      5   11  150     3    5   15   20   28   45   67   77   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     113     G     113      5   11  150     3    5    6   12   21   32   47   57   84   95  106  114  125  136  142  147  150  150  151  151 
LCS_GDT     L     114     L     114      5   11  150     3    3   12   20   31   53   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     115     L     115      5   11  150     3    5    6   20   33   53   68   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     116     T     116      4   11  150     3    5   15   24   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     117     G     117      4   11  150     3    4   18   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     N     118     N     118      4   11  150     3    8   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     F     119     F     119      4   12  150     3    4   15   18   38   57   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     120     E     120     10   12  150     8   11   15   22   41   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     121     A     121     10   12  150     8   11   15   22   40   57   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     122     S     122     10   12  150     8   11   14   17   29   46   65   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     123     G     123     10   12  150     8   11   14   21   29   46   65   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     124     R     124     10   12  150     8   11   14   21   33   53   68   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     H     125     H     125     10   12  150     8   11   14   21   29   44   61   79   89   97  104  114  127  136  142  147  150  150  151  151 
LCS_GDT     K     126     K     126     10   12  150     8   11   14   17   19   36   50   60   76   88   98  112  127  136  142  147  150  150  151  151 
LCS_GDT     L     127     L     127     10   12  150     8   11   14   17   19   31   46   56   76   85   96  109  127  136  142  147  150  150  151  151 
LCS_GDT     K     128     K     128     10   12  150     8   11   14   17   22   26   40   55   66   87   94  112  127  136  142  147  150  150  151  151 
LCS_GDT     L     129     L     129     10   12  150     8   11   14   17   19   29   39   53   64   81   90  107  118  136  142  147  150  150  151  151 
LCS_GDT     P     130     P     130      3   12  150     3    3    6   14   22   30   46   59   76   91   98  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     131     G     131      3    8  150     3    7   14   18   31   48   65   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     132     I     132      3    8  150     3    4   14   22   40   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     133     D     133      3    8  150     3    3    4   15   26   41   59   78   86   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     H     134     H     134      4    8  150     3    4    8   21   29   46   65   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     Y     135     Y     135      4    8  150     3    4   14   22   38   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     F     136     F     136      4    8  150     3    4    9   22   35   53   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     P     137     P     137      4    8  150     3    5   10   16   22   30   50   69   85   96  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     F     138     F     138      4    7  150     3    4    9   14   20   26   30   41   50   67   83  101  114  136  142  147  150  150  151  151 
LCS_GDT     G     139     G     139      4    7  150     3    4    8   14   21   26   32   48   64   82   99  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     140     A     140      4    7  150     3    4    6   10   15   23   29   38   49   60   90  107  123  136  142  147  150  150  151  151 
LCS_GDT     F     141     F     141      4    7  150     3    4    8   13   20   26   30   37   46   64   86   94  120  136  142  147  150  150  151  151 
LCS_GDT     A     142     A     142      4    7  150     3    4    6   10   17   23   32   50   68   91  102  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     143     D     143      5    7  150     4    5    6    7    9   12   27   36   45   53   82   94  109  120  137  147  150  150  151  151 
LCS_GDT     D     144     D     144      5    7  150     3    5   11   17   27   49   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     145     A     145      5    7  150     4    5    8   20   31   54   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     146     L     146      5    7  150     4    5    5   17   23   47   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     147     D     147      5    7  150     4    5    9   21   34   54   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     148     R     148      5    5  150     3    3    5   12   12   26   42   53   74   87   99  114  127  136  142  147  150  150  151  151 
LCS_GDT     N     149     N     149      5    5  150     3    3    5   14   22   26   31   42   51   64   84  100  119  136  142  147  150  150  151  151 
LCS_GDT     E     150     E     150      5    5  150     3    3    5   13   17   24   28   42   53   71   92  103  124  136  142  147  150  150  151  151 
LCS_GDT     L     151     L     151      5   13  150     3    3    5   13   20   27   45   50   59   65   75   97  112  124  135  147  150  150  151  151 
LCS_GDT     P     152     P     152     11   13  150     3   10   11   12   15   29   45   57   69   88  102  114  127  136  142  147  150  150  151  151 
LCS_GDT     H     153     H     153     11   13  150    10   11   14   15   22   30   50   59   78   91  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     154     I     154     11   13  150    10   10   11   19   35   49   61   71   85   96  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     155     A     155     11   13  150    10   10   11   14   22   39   51   64   79   91  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     156     L     156     11   13  150    10   10   11   14   22   26   31   42   54   73   92  107  125  136  142  147  150  150  151  151 
LCS_GDT     E     157     E     157     11   13  150    10   10   11   14   22   26   34   47   71   87  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     158     R     158     11   13  150    10   10   11   12   22   26   33   57   76   93  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     159     A     159     11   13  150    10   10   11   12   12   14   26   37   49   68   92  107  124  136  142  147  150  150  151  151 
LCS_GDT     R     160     R     160     11   13  150    10   10   11   12   12   14   26   40   50   60   87  103  121  136  142  147  150  150  151  151 
LCS_GDT     R     161     R     161     11   13  150    10   10   11   12   12   18   26   41   50   75   92  107  125  136  142  147  150  150  151  151 
LCS_GDT     M     162     M     162     11   13  150    10   10   11   12   12   16   24   31   42   66   91  106  123  136  142  147  150  150  151  151 
LCS_GDT     T     163     T     163      3   13  150     3    3    4    7   11   18   43   62   79   93  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     164     G     164      3   13  150     3    4    4    8   13   21   37   59   79   96  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     165     A     165      3   24  150     3    4    5   12   25   44   63   77   87   96  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     N     166     N     166      3   24  150     3    4   12   19   34   51   70   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     Y     167     Y     167      3   24  150     3    4   11   22   44   52   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     168     S     168      3   24  150     3    7   22   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     P     169     P     169      3   24  150     3   10   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     170     S     170      3   24  150     3   10   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     Q     171     Q     171      3   24  150     3    4    8   20   30   46   59   77   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     172     I     172      5   24  150     3    5   12   19   37   51   70   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     V     173     V     173      5   24  150     3    4   10   17   37   51   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     174     I     174      5   24  150     3    5   10   22   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     175     I     175      6   24  150     2    6   16   29   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     176     G     176      8   24  150     3    8   16   25   42   53   68   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     177     D     177     11   24  150     3   10   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     178     T     178     11   24  150     7   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     179     E     179     11   24  150     7   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     H     180     H     180     11   24  150     7   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     181     D     181     11   24  150     7   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     182     I     182     11   24  150     7   11   16   31   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     183     R     183     11   24  150     7   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     C     184     C     184     11   24  150     7   11   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     185     A     185     11   24  150     7   11   15   30   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     186     R     186     11   24  150     7   11   15   30   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     187     E     187     11   24  150     4   11   16   31   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     188     L     188      4   24  150     3    4   11   27   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     189     D     189      4   24  150     3    6   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     190     A     190      4   24  150     3    6   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     191     R     191      4   21  150     3    5    9   16   28   44   60   73   87   96  104  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     192     S     192      4   21  150     1   11   14   31   42   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     193     I     193      5   21  150     3    4   10   18   29   49   66   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     194     A     194      5   21  150     3    5   10   30   42   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     V     195     V     195      5   21  150     3    4   11   30   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     196     A     196      5   13  150     3    6   13   29   42   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     197     T     197      5   13  150     4    8   13   23   38   54   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     198     G     198      4   13  150     3    4    9   22   39   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     N     199     N     199      4   13  150     3    4    9   19   38   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     F     200     F     200      8   15  150     2    7   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     201     T     201      8   15  150     3   10   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     M     202     M     202      8   15  150     5    8   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     203     E     203      8   15  150     5    8   16   32   43   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     204     E     204      8   15  150     5    8   11   26   41   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     205     L     205      8   15  150     5    8   13   28   41   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     206     A     206      8   15  150     5    8   13   28   42   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     R     207     R     207      8   15  150     4    8   13   26   40   54   72   80   89   97  106  114  127  135  142  147  150  150  151  151 
LCS_GDT     H     208     H     208      5   15  150     3    5   11   24   43   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     K     209     K     209      3   15  150     3    4   15   24   41   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     P     210     P     210      3   15  150     3    5   23   32   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     G     211     G     211      3   15  150     0    6   16   31   44   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     212     T     212      3   15  150     2    6   13   23   35   50   60   75   88   96  103  114  127  133  142  147  150  150  151  151 
LCS_GDT     L     213     L     213      3   15  150     0    4    8   15   26   40   56   65   80   91   99  106  118  132  141  147  150  150  151  151 
LCS_GDT     F     214     F     214      5   15  150     3    5    8   18   26   44   56   65   73   89   97  106  118  132  141  147  150  150  151  151 
LCS_GDT     K     215     K     215      5    8  150     3    5   11   22   35   50   61   75   88   97  104  114  127  136  142  147  150  150  151  151 
LCS_GDT     N     216     N     216      5    8  150     3    5    8   22   40   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     F     217     F     217      5    8  150     3    5   10   21   37   58   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     218     A     218      5   12  150     3    5    7   14   20   41   60   78   88   94  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     219     E     219     11   12  150     9   10   10   11   27   40   65   78   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     220     T     220     11   12  150     9   10   10   11   11   16   30   45   56   85   99  114  127  136  142  147  150  150  151  151 
LCS_GDT     D     221     D     221     11   12  150     9   10   10   11   11   33   53   78   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     E     222     E     222     11   12  150     9   10   14   22   39   54   72   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     V     223     V     223     11   12  150     9   10   10   11   21   30   41   69   82   94  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     L     224     L     224     11   12  150     9   10   10   11   19   30   50   69   83   94  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     A     225     A     225     11   12  150     9   10   14   21   31   48   65   80   90   97  106  114  127  136  142  147  150  150  151  151 
LCS_GDT     S     226     S     226     11   12  150     9   10   10   11   11   19   28   46   61   82  100  114  127  136  142  147  150  150  151  151 
LCS_GDT     I     227     I     227     11   12  150     9   10   10   11   11   15   20   28   38   61   81   94  109  125  142  147  150  150  151  151 
LCS_GDT     L     228     L     228     11   12  150     8   10   10   11   14   23   41   50   64   85   98  114  127  136  142  147  150  150  151  151 
LCS_GDT     T     229     T     229     11   12  150     3    4    8   11   13   23   39   47   64   77   94  109  127  136  142  147  150  150  151  151 
LCS_AVERAGE  LCS_A:  37.20  (   4.43    9.63   97.55 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     11     23     32     44     58     72     80     90     97    106    114    127    136    142    147    150    150    151    151 
GDT PERCENT_CA   6.54   7.19  15.03  20.92  28.76  37.91  47.06  52.29  58.82  63.40  69.28  74.51  83.01  88.89  92.81  96.08  98.04  98.04  98.69  98.69
GDT RMS_LOCAL    0.17   0.52   1.17   1.41   1.81   2.15   2.44   2.62   2.96   3.17   3.61   3.74   4.20   4.57   4.73   4.84   4.95   4.95   5.03   5.03
GDT RMS_ALL_CA  14.58  10.59   5.95   6.00   5.82   5.92   5.87   5.81   5.67   5.67   5.58   5.60   5.53   5.48   5.49   5.48   5.47   5.47   5.46   5.46

#      Molecule1      Molecule2       DISTANCE
LGA    S       2      S       2         20.396
LGA    R       3      R       3         17.108
LGA    T       4      T       4         12.264
LGA    L       5      L       5          9.441
LGA    V       6      V       6          7.118
LGA    L       7      L       7          7.480
LGA    F       8      F       8          6.102
LGA    D       9      D       9          3.198
LGA    I      10      I      10          1.997
LGA    D      11      D      11          2.405
LGA    G      12      G      12          1.961
LGA    T      13      T      13          4.342
LGA    L      14      L      14          2.988
LGA    L      15      L      15          5.416
LGA    K      16      K      16          4.927
LGA    T      92      T      92          8.932
LGA    L      93      L      93          6.066
LGA    L      94      L      94          5.737
LGA    E      95      E      95          5.448
LGA    G      96      G      96          6.231
LGA    V      97      V      97          2.295
LGA    R      98      R      98          1.333
LGA    E      99      E      99          1.631
LGA    L     100      L     100          2.139
LGA    L     101      L     101          1.651
LGA    D     102      D     102          0.878
LGA    A     103      A     103          1.407
LGA    L     104      L     104          2.773
LGA    S     105      S     105          3.087
LGA    S     106      S     106          1.925
LGA    R     107      R     107          1.892
LGA    S     108      S     108          2.097
LGA    D     109      D     109          3.754
LGA    V     110      V     110          0.929
LGA    L     111      L     111          5.848
LGA    L     112      L     112          4.303
LGA    G     113      G     113          5.951
LGA    L     114      L     114          3.131
LGA    L     115      L     115          3.664
LGA    T     116      T     116          2.344
LGA    G     117      G     117          1.437
LGA    N     118      N     118          2.549
LGA    F     119      F     119          3.081
LGA    E     120      E     120          2.337
LGA    A     121      A     121          2.581
LGA    S     122      S     122          5.241
LGA    G     123      G     123          5.154
LGA    R     124      R     124          4.677
LGA    H     125      H     125          6.342
LGA    K     126      K     126          8.471
LGA    L     127      L     127          8.505
LGA    K     128      K     128          9.038
LGA    L     129      L     129         10.796
LGA    P     130      P     130          8.679
LGA    G     131      G     131          5.383
LGA    I     132      I     132          2.858
LGA    D     133      D     133          6.534
LGA    H     134      H     134          5.653
LGA    Y     135      Y     135          3.258
LGA    F     136      F     136          3.630
LGA    P     137      P     137          6.474
LGA    F     138      F     138          9.340
LGA    G     139      G     139          7.281
LGA    A     140      A     140          8.075
LGA    F     141      F     141          8.076
LGA    A     142      A     142          6.193
LGA    D     143      D     143          8.771
LGA    D     144      D     144          3.666
LGA    A     145      A     145          3.414
LGA    L     146      L     146          3.595
LGA    D     147      D     147          3.401
LGA    R     148      R     148          6.454
LGA    N     149      N     149          9.597
LGA    E     150      E     150          9.704
LGA    L     151      L     151          9.995
LGA    P     152      P     152          8.071
LGA    H     153      H     153          7.786
LGA    I     154      I     154          6.194
LGA    A     155      A     155          7.280
LGA    L     156      L     156          8.917
LGA    E     157      E     157          8.206
LGA    R     158      R     158          7.248
LGA    A     159      A     159          8.927
LGA    R     160      R     160         10.298
LGA    R     161      R     161          9.464
LGA    M     162      M     162          9.305
LGA    T     163      T     163          7.046
LGA    G     164      G     164          6.419
LGA    A     165      A     165          4.647
LGA    N     166      N     166          3.995
LGA    Y     167      Y     167          3.264
LGA    S     168      S     168          2.182
LGA    P     169      P     169          0.369
LGA    S     170      S     170          1.096
LGA    Q     171      Q     171          5.058
LGA    I     172      I     172          3.717
LGA    V     173      V     173          3.390
LGA    I     174      I     174          2.398
LGA    I     175      I     175          3.048
LGA    G     176      G     176          3.768
LGA    D     177      D     177          2.135
LGA    T     178      T     178          1.406
LGA    E     179      E     179          1.781
LGA    H     180      H     180          0.980
LGA    D     181      D     181          1.359
LGA    I     182      I     182          2.326
LGA    R     183      R     183          1.696
LGA    C     184      C     184          1.050
LGA    A     185      A     185          2.548
LGA    R     186      R     186          2.814
LGA    E     187      E     187          2.749
LGA    L     188      L     188          2.926
LGA    D     189      D     189          1.621
LGA    A     190      A     190          1.590
LGA    R     191      R     191          5.144
LGA    S     192      S     192          2.410
LGA    I     193      I     193          4.193
LGA    A     194      A     194          2.917
LGA    V     195      V     195          2.811
LGA    A     196      A     196          2.620
LGA    T     197      T     197          3.511
LGA    G     198      G     198          2.880
LGA    N     199      N     199          3.441
LGA    F     200      F     200          1.116
LGA    T     201      T     201          0.759
LGA    M     202      M     202          1.749
LGA    E     203      E     203          2.040
LGA    E     204      E     204          2.992
LGA    L     205      L     205          2.763
LGA    A     206      A     206          3.130
LGA    R     207      R     207          3.612
LGA    H     208      H     208          2.767
LGA    K     209      K     209          3.009
LGA    P     210      P     210          1.446
LGA    G     211      G     211          2.266
LGA    T     212      T     212          4.956
LGA    L     213      L     213          6.152
LGA    F     214      F     214          6.556
LGA    K     215      K     215          5.092
LGA    N     216      N     216          3.266
LGA    F     217      F     217          3.570
LGA    A     218      A     218          6.401
LGA    E     219      E     219          5.186
LGA    T     220      T     220          7.548
LGA    D     221      D     221          5.311
LGA    E     222      E     222          3.743
LGA    V     223      V     223          7.113
LGA    L     224      L     224          7.279
LGA    A     225      A     225          4.768
LGA    S     226      S     226          7.368
LGA    I     227      I     227          9.648
LGA    L     228      L     228          8.447
LGA    T     229      T     229          8.362

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0     80    2.62    44.118    37.377     2.939

LGA_LOCAL      RMSD =  2.622  Number of atoms =   80  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.760  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  5.449  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.471250 * X  +   0.260109 * Y  +   0.842773 * Z  +  16.178339
  Y_new =  -0.784335 * X  +   0.560629 * Y  +   0.265544 * Z  +  41.187393
  Z_new =  -0.403413 * X  +  -0.786154 * Y  +   0.468210 * Z  +  19.938862 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.033641    2.107952  [ DEG:   -59.2232    120.7768 ]
  Theta =   0.415244    2.726349  [ DEG:    23.7917    156.2083 ]
  Phi   =  -1.029768    2.111825  [ DEG:   -59.0014    120.9986 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0330TS168_2-D1                               
REMARK     2: T0330_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0330TS168_2-D1.T0330_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0   80   2.62  37.377     5.45
REMARK  ---------------------------------------------------------- 
MOLECULE T0330TS168_2-D1
PFRMAT TS
TARGET T0330
MODEL 2
PARENT N/A
ATOM      2  CA  SER     2      16.256  38.313  35.995  1.00 25.00           C
ATOM      3  CA  ARG     3      18.853  40.880  34.994  1.00 25.00           C
ATOM      4  CA  THR     4      22.175  42.651  34.710  1.00 25.00           C
ATOM      5  CA  LEU     5      22.738  46.004  32.930  1.00 25.00           C
ATOM      6  CA  VAL     6      20.784  44.305  30.069  1.00 25.00           C
ATOM      7  CA  LEU     7      21.282  42.978  26.497  1.00 25.00           C
ATOM      8  CA  PHE     8      22.095  40.507  23.681  1.00 25.00           C
ATOM      9  CA  ASP     9      20.611  42.988  21.242  1.00 25.00           C
ATOM     10  CA  ILE    10      21.263  42.217  17.568  1.00 25.00           C
ATOM     11  CA  ASP    11      22.570  39.868  14.842  1.00 25.00           C
ATOM     12  CA  GLY    12      22.032  36.271  15.937  1.00 25.00           C
ATOM     13  CA  THR    13      18.719  37.690  17.266  1.00 25.00           C
ATOM     14  CA  LEU    14      16.115  40.357  18.092  1.00 25.00           C
ATOM     15  CA  LEU    15      15.588  41.654  14.558  1.00 25.00           C
ATOM     16  CA  LYS    16      17.770  39.364  12.531  1.00 25.00           C
ATOM     92  CA  THR    92       8.946  41.512  13.836  1.00 25.00           C
ATOM     93  CA  LEU    93      10.265  40.926  17.366  1.00 25.00           C
ATOM     94  CA  LEU    94      11.848  37.772  18.887  1.00 25.00           C
ATOM     95  CA  GLU    95      12.170  36.785  22.547  1.00 25.00           C
ATOM     96  CA  GLY    96      15.798  37.948  22.664  1.00 25.00           C
ATOM     97  CA  VAL    97      15.462  40.870  25.031  1.00 25.00           C
ATOM     98  CA  ARG    98      11.681  41.063  25.610  1.00 25.00           C
ATOM     99  CA  GLU    99      12.241  41.129  29.398  1.00 25.00           C
ATOM    100  CA  LEU   100      14.814  43.937  28.994  1.00 25.00           C
ATOM    101  CA  LEU   101      12.346  45.921  26.837  1.00 25.00           C
ATOM    102  CA  ASP   102       9.617  45.449  29.482  1.00 25.00           C
ATOM    103  CA  ALA   103      12.019  46.654  32.211  1.00 25.00           C
ATOM    104  CA  LEU   104      12.900  49.731  30.109  1.00 25.00           C
ATOM    105  CA  SER   105       9.179  50.481  29.601  1.00 25.00           C
ATOM    106  CA  SER   106       8.576  50.167  33.370  1.00 25.00           C
ATOM    107  CA  ARG   107      11.493  52.552  34.060  1.00 25.00           C
ATOM    108  CA  SER   108      14.046  54.928  35.474  1.00 25.00           C
ATOM    109  CA  ASP   109      14.900  55.905  31.913  1.00 25.00           C
ATOM    110  CA  VAL   110      17.494  53.224  31.362  1.00 25.00           C
ATOM    111  CA  LEU   111      19.656  50.165  30.500  1.00 25.00           C
ATOM    112  CA  LEU   112      18.839  48.447  27.166  1.00 25.00           C
ATOM    113  CA  GLY   113      18.373  46.622  23.861  1.00 25.00           C
ATOM    114  CA  LEU   114      18.160  47.496  20.136  1.00 25.00           C
ATOM    115  CA  LEU   115      20.415  47.366  17.068  1.00 25.00           C
ATOM    116  CA  THR   116      21.444  45.649  13.866  1.00 25.00           C
ATOM    117  CA  GLY   117      23.979  44.418  11.238  1.00 25.00           C
ATOM    118  CA  ASN   118      22.705  47.484   9.396  1.00 25.00           C
ATOM    119  CA  PHE   119      20.805  50.682  10.213  1.00 25.00           C
ATOM    120  CA  GLU   120      17.716  49.141  11.929  1.00 25.00           C
ATOM    121  CA  ALA   121      14.115  49.735  10.766  1.00 25.00           C
ATOM    122  CA  SER   122      12.912  46.799  12.913  1.00 25.00           C
ATOM    123  CA  GLY   123      14.785  48.213  15.940  1.00 25.00           C
ATOM    124  CA  ARG   124      13.190  51.646  15.353  1.00 25.00           C
ATOM    125  CA  HIS   125       9.726  50.027  15.140  1.00 25.00           C
ATOM    126  CA  LYS   126      10.377  48.145  18.411  1.00 25.00           C
ATOM    127  CA  LEU   127      11.469  51.405  20.098  1.00 25.00           C
ATOM    128  CA  LYS   128       8.293  53.143  18.852  1.00 25.00           C
ATOM    129  CA  LEU   129       6.157  50.268  20.207  1.00 25.00           C
ATOM    130  CA  PRO   130       5.195  47.196  22.247  1.00 25.00           C
ATOM    131  CA  GLY   131       7.026  44.555  24.251  1.00 25.00           C
ATOM    132  CA  ILE   132      10.228  46.190  23.051  1.00 25.00           C
ATOM    133  CA  ASP   133       9.150  49.480  24.599  1.00 25.00           C
ATOM    134  CA  HIS   134      11.501  52.495  24.827  1.00 25.00           C
ATOM    135  CA  TYR   135      14.375  50.391  23.420  1.00 25.00           C
ATOM    136  CA  PHE   136      17.373  51.985  21.754  1.00 25.00           C
ATOM    137  CA  PRO   137      18.435  54.268  24.619  1.00 25.00           C
ATOM    138  CA  PHE   138      21.217  52.072  25.922  1.00 25.00           C
ATOM    139  CA  GLY   139      23.012  50.306  23.006  1.00 25.00           C
ATOM    140  CA  ALA   140      23.901  47.599  20.506  1.00 25.00           C
ATOM    141  CA  PHE   141      26.746  47.962  17.949  1.00 25.00           C
ATOM    142  CA  ALA   142      24.994  49.361  14.826  1.00 25.00           C
ATOM    143  CA  ASP   143      23.627  52.701  15.922  1.00 25.00           C
ATOM    144  CA  ASP   144      24.963  54.531  12.833  1.00 25.00           C
ATOM    145  CA  ALA   145      25.833  51.972  10.203  1.00 25.00           C
ATOM    146  CA  LEU   146      28.927  49.792  10.106  1.00 25.00           C
ATOM    147  CA  ASP   147      30.826  51.844   7.503  1.00 25.00           C
ATOM    148  CA  ARG   148      31.804  48.212   6.754  1.00 25.00           C
ATOM    149  CA  ASN   149      30.847  44.689   7.910  1.00 25.00           C
ATOM    150  CA  GLU   150      33.486  45.019  10.634  1.00 25.00           C
ATOM    151  CA  LEU   151      35.958  47.736  11.685  1.00 25.00           C
ATOM    152  CA  PRO   152      33.190  48.824  14.145  1.00 25.00           C
ATOM    153  CA  HIS   153      34.441  52.434  14.141  1.00 25.00           C
ATOM    154  CA  ILE   154      31.703  55.032  13.496  1.00 25.00           C
ATOM    155  CA  ALA   155      29.025  52.515  14.571  1.00 25.00           C
ATOM    156  CA  LEU   156      30.989  51.754  17.769  1.00 25.00           C
ATOM    157  CA  GLU   157      31.281  55.499  18.511  1.00 25.00           C
ATOM    158  CA  ARG   158      27.511  55.923  17.981  1.00 25.00           C
ATOM    159  CA  ALA   159      26.824  52.994  20.350  1.00 25.00           C
ATOM    160  CA  ARG   160      29.128  54.551  22.983  1.00 25.00           C
ATOM    161  CA  ARG   161      27.311  57.902  22.626  1.00 25.00           C
ATOM    162  CA  MET   162      23.934  56.145  23.044  1.00 25.00           C
ATOM    163  CA  THR   163      22.726  59.748  22.631  1.00 25.00           C
ATOM    164  CA  GLY   164      24.233  60.574  26.024  1.00 25.00           C
ATOM    165  CA  ALA   165      23.001  58.747  29.124  1.00 25.00           C
ATOM    166  CA  ASN   166      26.499  59.463  30.347  1.00 25.00           C
ATOM    167  CA  TYR   167      27.712  56.443  28.466  1.00 25.00           C
ATOM    168  CA  SER   168      31.033  58.357  28.845  1.00 25.00           C
ATOM    169  CA  PRO   169      32.524  55.162  30.159  1.00 25.00           C
ATOM    170  CA  SER   170      30.062  53.453  32.493  1.00 25.00           C
ATOM    171  CA  GLN   171      29.384  49.842  31.452  1.00 25.00           C
ATOM    172  CA  ILE   172      26.334  49.550  29.314  1.00 25.00           C
ATOM    173  CA  VAL   173      23.908  47.333  27.448  1.00 25.00           C
ATOM    174  CA  ILE   174      25.803  45.501  24.738  1.00 25.00           C
ATOM    175  CA  ILE   175      26.222  43.237  21.671  1.00 25.00           C
ATOM    176  CA  GLY   176      26.522  42.233  18.025  1.00 25.00           C
ATOM    177  CA  ASP   177      27.118  38.515  18.561  1.00 25.00           C
ATOM    178  CA  THR   178      30.687  38.230  17.450  1.00 25.00           C
ATOM    179  CA  GLU   179      34.201  39.512  17.104  1.00 25.00           C
ATOM    180  CA  HIS   180      32.775  42.860  15.913  1.00 25.00           C
ATOM    181  CA  ASP   181      31.212  43.450  19.360  1.00 25.00           C
ATOM    182  CA  ILE   182      34.563  42.662  21.040  1.00 25.00           C
ATOM    183  CA  ARG   183      36.343  45.112  18.696  1.00 25.00           C
ATOM    184  CA  CYS   184      33.756  47.814  19.515  1.00 25.00           C
ATOM    185  CA  ALA   185      34.256  47.191  23.261  1.00 25.00           C
ATOM    186  CA  ARG   186      38.050  47.469  22.826  1.00 25.00           C
ATOM    187  CA  GLU   187      37.614  50.761  20.918  1.00 25.00           C
ATOM    188  CA  LEU   188      34.302  51.930  22.372  1.00 25.00           C
ATOM    189  CA  ASP   189      34.501  53.063  25.996  1.00 25.00           C
ATOM    190  CA  ALA   190      30.929  52.075  26.900  1.00 25.00           C
ATOM    191  CA  ARG   191      29.814  49.416  24.507  1.00 25.00           C
ATOM    192  CA  SER   192      31.331  47.410  27.348  1.00 25.00           C
ATOM    193  CA  ILE   193      30.625  44.327  25.170  1.00 25.00           C
ATOM    194  CA  ALA   194      29.991  40.879  23.585  1.00 25.00           C
ATOM    195  CA  VAL   195      27.453  38.047  23.579  1.00 25.00           C
ATOM    196  CA  ALA   196      24.708  35.448  23.970  1.00 25.00           C
ATOM    197  CA  THR   197      22.797  36.363  20.847  1.00 25.00           C
ATOM    198  CA  GLY   198      22.498  32.595  20.518  1.00 25.00           C
ATOM    199  CA  ASN   199      25.750  30.756  19.807  1.00 25.00           C
ATOM    200  CA  PHE   200      28.995  32.600  19.150  1.00 25.00           C
ATOM    201  CA  THR   201      30.435  30.222  21.731  1.00 25.00           C
ATOM    202  CA  MET   202      29.967  32.354  24.900  1.00 25.00           C
ATOM    203  CA  GLU   203      33.581  31.479  25.819  1.00 25.00           C
ATOM    204  CA  GLU   204      34.870  34.136  23.380  1.00 25.00           C
ATOM    205  CA  LEU   205      32.502  36.726  24.912  1.00 25.00           C
ATOM    206  CA  ALA   206      33.728  35.808  28.422  1.00 25.00           C
ATOM    207  CA  ARG   207      37.363  36.174  27.276  1.00 25.00           C
ATOM    208  CA  HIS   208      39.110  39.098  25.582  1.00 25.00           C
ATOM    209  CA  LYS   209      37.318  42.446  25.224  1.00 25.00           C
ATOM    210  CA  PRO   210      34.520  42.265  27.765  1.00 25.00           C
ATOM    211  CA  GLY   211      31.280  41.970  29.790  1.00 25.00           C
ATOM    212  CA  THR   212      28.269  44.230  29.255  1.00 25.00           C
ATOM    213  CA  LEU   213      25.675  41.711  28.105  1.00 25.00           C
ATOM    214  CA  PHE   214      22.270  40.296  27.476  1.00 25.00           C
ATOM    215  CA  LYS   215      23.032  36.873  28.914  1.00 25.00           C
ATOM    216  CA  ASN   216      19.622  35.526  29.778  1.00 25.00           C
ATOM    217  CA  PHE   217      18.866  38.477  32.157  1.00 25.00           C
ATOM    218  CA  ALA   218      18.961  37.656  35.896  1.00 25.00           C
ATOM    219  CA  GLU   219      22.551  36.368  35.548  1.00 25.00           C
ATOM    220  CA  THR   220      23.549  39.576  33.708  1.00 25.00           C
ATOM    221  CA  ASP   221      21.953  41.689  36.475  1.00 25.00           C
ATOM    222  CA  GLU   222      23.849  39.685  39.132  1.00 25.00           C
ATOM    223  CA  VAL   223      27.126  40.207  37.222  1.00 25.00           C
ATOM    224  CA  LEU   224      26.432  43.967  37.007  1.00 25.00           C
ATOM    225  CA  ALA   225      25.734  44.078  40.771  1.00 25.00           C
ATOM    226  CA  SER   226      29.012  42.218  41.457  1.00 25.00           C
ATOM    227  CA  ILE   227      30.910  44.692  39.233  1.00 25.00           C
ATOM    228  CA  LEU   228      29.314  47.632  41.098  1.00 25.00           C
ATOM    229  CA  THR   229      32.149  47.108  43.531  1.00 25.00           C
TER
END
