
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0330TS168_3-D1
# Molecule2: number of CA atoms  153 ( 1188),  selected  153 , name T0330_D1.pdb
# PARAMETERS: T0330TS168_3-D1.T0330_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   134         5 - 213         5.00     6.04
  LCS_AVERAGE:     82.94

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21       171 - 191         1.99     7.24
  LCS_AVERAGE:      8.66

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        96 - 108         0.90     8.35
  LONGEST_CONTINUOUS_SEGMENT:    13       176 - 188         0.83     9.46
  LCS_AVERAGE:      4.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     S       2     S       2      0    5  115     0    0    4    5    6    9   20   26   31   38   46   51   57   65   76   86   90  108  114  115 
LCS_GDT     R       3     R       3      3    5  117     3    3    7   10   14   17   22   34   44   53   61   62   76   90  102  106  112  119  128  133 
LCS_GDT     T       4     T       4      6    8  118     3    6   12   23   30   40   49   59   70   81   96  106  113  118  124  130  134  139  146  147 
LCS_GDT     L       5     L       5      6    8  134     3    8   20   26   33   40   51   64   76   88  102  112  116  123  129  134  140  143  146  147 
LCS_GDT     V       6     V       6      6    8  134     3    6   16   26   33   40   51   64   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L       7     L       7      6    8  134     3    5   12   22   30   40   48   58   70   84  101  111  116  123  129  134  140  143  146  147 
LCS_GDT     F       8     F       8      6    8  134     3    6   16   23   31   40   53   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D       9     D       9      6    8  134     3    5   16   26   33   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I      10     I      10      3    8  134     3    3    9   18   29   35   47   64   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D      11     D      11      5    8  134     5    7   14   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G      12     G      12      5    6  134     5    5    6    7    8   15   15   40   55   75   87  103  116  123  129  134  140  143  146  147 
LCS_GDT     T      13     T      13      5    6  134     5    5    6   12   15   21   31   36   51   66   83   96  107  116  126  132  137  143  146  147 
LCS_GDT     L      14     L      14      5    6  134     5    5    6    7   13   25   37   43   54   66   81   98  107  117  124  130  137  143  146  147 
LCS_GDT     L      15     L      15      5    6  134     3    5    9   17   28   36   48   62   76   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     K      16     K      16      4    6  134     0    3   10   21   30   44   59   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     T      92     T      92      3    7  134     3    3    4   16   24   34   44   56   64   75   92  107  116  123  129  134  140  143  146  147 
LCS_GDT     L      93     L      93      5   16  134     3    4    7   16   27   37   51   60   75   89  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L      94     L      94      5   16  134     3    4    7   20   28   40   51   65   77   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E      95     E      95      5   16  134     3    4    7   17   28   40   51   65   77   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G      96     G      96     13   16  134     6   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     V      97     V      97     13   16  134    10   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R      98     R      98     13   16  134    10   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E      99     E      99     13   16  134    10   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     100     L     100     13   16  134    10   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     101     L     101     13   16  134    10   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     102     D     102     13   16  134    10   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     103     A     103     13   16  134    10   13   16   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     104     L     104     13   16  134    10   13   16   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     105     S     105     13   16  134     8   13   16   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     106     S     106     13   16  134     3   13   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     107     R     107     13   16  134     3   10   15   23   32   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     108     S     108     13   16  134     0    5   10   21   34   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     109     D     109      3   15  134     3    3    6   15   24   34   59   69   77   88  102  112  116  123  129  133  140  143  146  147 
LCS_GDT     V     110     V     110      4   15  134     3    9   14   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     111     L     111      4   15  134     3    5   15   26   33   45   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     112     L     112      4   15  134     5    6   21   26   33   40   56   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     113     G     113      5   16  134     3    6   21   26   33   40   53   68   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     114     L     114      5   19  134     5    8   21   26   33   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     115     L     115      5   19  134     3    4    6   18   26   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     T     116     T     116      5   20  134     5    6   16   26   33   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     117     G     117      5   20  134     5   10   16   26   33   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     N     118     N     118      4   20  134     5   10   21   26   35   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     F     119     F     119     12   20  134     3    5   16   23   33   41   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E     120     E     120     12   20  134     3   11   14   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     121     A     121     12   20  134     7   11   15   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     122     S     122     12   20  134     7   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     123     G     123     12   20  134     7   11   16   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     124     R     124     12   20  134     7   11   14   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     H     125     H     125     12   20  134     7   11   16   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     K     126     K     126     12   20  134     7   11   14   21   30   42   58   67   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     127     L     127     12   20  134     7   11   14   20   29   40   55   66   77   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     K     128     K     128     12   20  134     7   11   14   23   31   43   58   67   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     129     L     129     12   20  134     4   10   14   21   29   37   55   67   77   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     P     130     P     130     12   20  134     3   11   14   17   24   35   46   56   68   80   94  108  116  123  129  134  140  143  146  147 
LCS_GDT     G     131     G     131      5   20  134     3    5   11   19   27   39   55   67   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I     132     I     132      5   20  134     4    6   14   21   33   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     133     D     133      5   20  134     4    5   10   20   30   42   58   67   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     H     134     H     134      5   20  134     4    6   10   19   30   39   55   67   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     Y     135     Y     135      5   20  134     4    6   12   22   31   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     F     136     F     136      4    7  134     3    5   21   26   33   41   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     P     137     P     137      4    7  134     3    5   10   15   21   38   48   68   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     F     138     F     138      3    7  134     3    3   15   24   30   40   49   63   76   88  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     139     G     139      3    7  134     3    5   18   26   33   41   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     140     A     140      4    7  134     3    3   21   26   33   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     F     141     F     141      4    7  134     3    5    9   16   30   39   49   60   76   87  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     142     A     142      4    7  134     3    4    7   17   30   40   49   60   75   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     143     D     143      4    6  134     3    4    6    7    8    9   10   10   23   55   62   65   78   86  103  112  117  128  131  140 
LCS_GDT     D     144     D     144      4    6  134     3    4    7   15   16   18   22   33   41   55   64   74   81  102  111  119  127  135  142  144 
LCS_GDT     A     145     A     145      4    6  134     3    4   12   22   30   40   48   58   70   81   95  109  116  123  129  134  140  143  146  147 
LCS_GDT     L     146     L     146      3    6  134     3    4   11   22   31   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     147     D     147      4    6  134     3    4   12   19   24   40   54   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     148     R     148      4    6  134     3    4    6    9   15   21   28   36   50   71   87   98  107  120  127  133  140  143  146  147 
LCS_GDT     N     149     N     149      4    6  134     3    4    6   11   15   21   28   39   53   83   90  101  110  123  128  134  140  143  146  147 
LCS_GDT     E     150     E     150      4    6  134     5   10   14   21   30   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     151     L     151      3   13  134     3    3    5   10   18   28   41   54   72   86  102  112  116  123  129  134  140  143  146  147 
LCS_GDT     P     152     P     152      3   13  134     5    5    5   11   21   28   40   59   77   89  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     H     153     H     153     10   13  134    10   10   14   19   25   34   48   66   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I     154     I     154     10   13  134    10   10   10   11   18   26   36   52   75   86  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     155     A     155     10   13  134    10   10   10   13   22   31   42   60   74   86  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     156     L     156     10   13  134    10   10   10   13   20   23   31   46   70   86  101  112  116  123  129  134  140  143  146  147 
LCS_GDT     E     157     E     157     10   13  134    10   10   10   19   31   40   48   58   71   86  101  110  115  123  129  134  140  143  146  147 
LCS_GDT     R     158     R     158     10   13  134    10   10   11   19   30   40   49   63   77   89  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     159     A     159     10   13  134    10   10   10   10   15   21   35   55   77   88  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     160     R     160     10   13  134    10   10   10   10   11   12   13   14   28   37   49   74   91  110  117  127  132  137  146  147 
LCS_GDT     R     161     R     161     10   13  134    10   10   10   10   11   12   14   33   59   65   75   93  105  110  118  125  132  137  146  147 
LCS_GDT     M     162     M     162     10   13  134    10   10   10   15   21   26   43   56   72   88  102  112  116  123  129  134  140  143  146  147 
LCS_GDT     T     163     T     163      5   13  134     3    4    7   14   21   38   48   68   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     164     G     164      5    6  134     3    4    8   14   26   38   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     165     A     165      5    6  134     3    4    7   14   25   42   58   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     N     166     N     166      5    6  134     3    4    9   17   25   39   55   63   78   88  102  112  116  123  129  134  140  143  146  147 
LCS_GDT     Y     167     Y     167      5    6  134     3    4    9   18   29   40   55   67   78   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     168     S     168      4   16  134     3    4    9   19   28   43   56   67   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     P     169     P     169      4   16  134     3    5    8   17   25   39   55   67   78   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     170     S     170      4   16  134     3    6    8   16   25   37   55   64   77   88  102  112  116  123  129  134  140  143  146  147 
LCS_GDT     Q     171     Q     171      3   21  134     3    3    5   11   22   33   48   63   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I     172     I     172      4   21  134     2    6    7   13   20   27   39   64   75   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     V     173     V     173      4   21  134     2    6   10   19   31   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I     174     I     174      4   21  134     3    8   21   26   34   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I     175     I     175      4   21  134     3    6   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     176     G     176     13   21  134     4   11   21   26   33   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     177     D     177     13   21  134     3    6   15   26   33   38   57   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     T     178     T     178     13   21  134     3   11   21   26   33   46   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E     179     E     179     13   21  134     6   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     H     180     H     180     13   21  134     6   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     181     D     181     13   21  134     6   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     I     182     I     182     13   21  134     6   11   21   26   33   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     183     R     183     13   21  134     6   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     C     184     C     184     13   21  134     6   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     185     A     185     13   21  134     6   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     186     R     186     13   21  134     4   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E     187     E     187     13   21  134     4   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     188     L     188     13   21  134     4   11   21   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     D     189     D     189      3   21  134     4    9   16   26   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     190     A     190      4   21  134     2   10   14   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     191     R     191      4   21  134     3    5   12   19   35   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     S     192     S     192      4    8  134     3    4    7   17   22   29   45   61   72   85   97  110  116  123  129  134  140  143  146  147 
LCS_GDT     I     193     I     193      5    8  134     3    5    5    6   10   14   23   28   38   51   70   86   98  111  125  132  140  143  146  147 
LCS_GDT     A     194     A     194      5    8  134     1    5    5    6   10   20   23   29   36   57   73   89  100  114  125  132  140  143  146  147 
LCS_GDT     V     195     V     195      5    8  134     3    5    5    6    9   13   22   32   37   46   62   82   96  113  119  128  135  143  146  147 
LCS_GDT     A     196     A     196      5    8  134     3    5    5    6    9   17   20   31   41   46   62   82   96  106  117  125  129  133  144  145 
LCS_GDT     T     197     T     197      5    8  134     3    5    5   13   22   26   37   50   63   76   91  106  114  123  129  134  140  143  146  147 
LCS_GDT     G     198     G     198      4    8  134     3    3    4   18   28   43   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     N     199     N     199      4    8  134     3    3    5   18   23   31   42   55   68   83   97  110  116  123  129  134  140  143  146  147 
LCS_GDT     F     200     F     200      4    4  134     4    9   12   18   23   28   40   50   62   79   90  105  115  123  129  134  140  143  146  147 
LCS_GDT     T     201     T     201      3    4  134     3    3   14   21   29   39   55   66   78   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     M     202     M     202      6   11  134     5    6   12   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E     203     E     203      6   11  134    10   13   15   20   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     E     204     E     204      6   11  134    10   13   15   19   26   42   59   69   78   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     205     L     205      6   11  134     5    8   14   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     A     206     A     206      6   11  134     5    6    8   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     R     207     R     207      6   11  134     3    6    8   18   29   38   59   69   78   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     H     208     H     208      5   11  134     3    7   15   23   36   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     K     209     K     209      5   11  134     3    4    8   14   24   38   59   69   78   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     P     210     P     210      5   11  134     3    3   11   20   30   47   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     G     211     G     211      3   11  134     3    3   13   20   30   48   62   69   79   90  103  112  116  123  129  134  140  143  146  147 
LCS_GDT     T     212     T     212      3   11  134     3    4    8   14   22   33   45   63   74   85  101  112  116  123  129  134  140  143  146  147 
LCS_GDT     L     213     L     213      3    6  134     0    3    4   12   19   26   40   52   64   80   92  104  116  123  129  134  140  143  146  147 
LCS_GDT     F     214     F     214      4    6  133     3    3    5   14   20   28   40   54   67   80   93  107  116  123  129  134  140  143  146  147 
LCS_GDT     K     215     K     215      4    6  133     3    3    7   12   29   36   45   62   76   86  102  112  116  123  129  134  140  143  146  147 
LCS_GDT     N     216     N     216      4    6  128     3    3    6    9   13   31   42   53   69   86   97  110  116  123  129  134  140  143  146  147 
LCS_GDT     F     217     F     217      4    6  128     3    6    7    9   21   28   39   53   68   86   97  109  116  123  129  134  140  143  146  147 
LCS_GDT     A     218     A     218      4   12   60     3    4    5    6    9   18   22   32   54   64   71   88  102  116  126  134  140  143  145  147 
LCS_GDT     E     219     E     219     11   12   60     9   10   11   11   11   21   33   46   54   68   88  100  109  120  127  134  140  143  146  147 
LCS_GDT     T     220     T     220     11   12   60     9   10   11   11   11   13   18   24   24   45   56   76   88  100  115  129  139  142  146  147 
LCS_GDT     D     221     D     221     11   12   60     9   10   11   11   11   16   21   46   54   64   73   87  107  117  127  134  140  143  146  147 
LCS_GDT     E     222     E     222     11   12   60     9   10   11   11   14   24   38   53   65   82   96  105  113  123  129  134  140  143  146  147 
LCS_GDT     V     223     V     223     11   12   52     9   10   11   11   11   11   18   28   48   64   74   89   97  113  126  134  140  143  146  147 
LCS_GDT     L     224     L     224     11   12   52     9   10   11   11   11   12   17   46   54   64   74   78   96  111  126  133  140  143  146  147 
LCS_GDT     A     225     A     225     11   12   52     9   10   11   11   14   23   35   48   61   79   94  105  113  122  129  134  140  143  146  147 
LCS_GDT     S     226     S     226     11   12   33     9   10   11   11   11   11   15   28   42   60   74   89   97  113  126  134  140  143  146  147 
LCS_GDT     I     227     I     227     11   12   33     9   10   11   11   11   11   15   18   24   33   53   68   74  100  110  120  126  137  143  146 
LCS_GDT     L     228     L     228     11   12   33     9   10   11   11   11   18   22   26   42   60   74   89   97  111  126  134  140  143  146  147 
LCS_GDT     T     229     T     229     11   12   33     3    3   11   11   11   11   14   20   51   63   81  101  112  123  129  134  140  143  146  147 
LCS_AVERAGE  LCS_A:  32.12  (   4.76    8.66   82.94 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     21     26     36     48     62     69     79     90    103    112    116    123    129    134    140    143    146    147 
GDT PERCENT_CA   6.54   8.50  13.73  16.99  23.53  31.37  40.52  45.10  51.63  58.82  67.32  73.20  75.82  80.39  84.31  87.58  91.50  93.46  95.42  96.08
GDT RMS_LOCAL    0.17   0.49   1.17   1.31   1.87   2.21   2.53   2.70   3.05   3.32   3.69   3.91   4.05   4.28   4.52   4.83   5.07   5.19   5.33   5.37
GDT RMS_ALL_CA  27.41   8.64   7.49   7.68   6.25   6.25   6.18   6.21   6.10   6.12   6.05   6.04   6.03   6.02   5.97   5.94   5.94   5.94   5.92   5.93

#      Molecule1      Molecule2       DISTANCE
LGA    S       2      S       2         15.821
LGA    R       3      R       3         12.522
LGA    T       4      T       4          6.531
LGA    L       5      L       5          5.120
LGA    V       6      V       6          4.357
LGA    L       7      L       7          5.859
LGA    F       8      F       8          3.807
LGA    D       9      D       9          2.703
LGA    I      10      I      10          5.060
LGA    D      11      D      11          2.522
LGA    G      12      G      12          7.810
LGA    T      13      T      13          8.403
LGA    L      14      L      14          8.054
LGA    L      15      L      15          5.001
LGA    K      16      K      16          3.788
LGA    T      92      T      92          8.893
LGA    L      93      L      93          6.500
LGA    L      94      L      94          5.654
LGA    E      95      E      95          5.729
LGA    G      96      G      96          2.963
LGA    V      97      V      97          2.659
LGA    R      98      R      98          3.227
LGA    E      99      E      99          2.840
LGA    L     100      L     100          1.747
LGA    L     101      L     101          1.942
LGA    D     102      D     102          1.835
LGA    A     103      A     103          1.680
LGA    L     104      L     104          1.652
LGA    S     105      S     105          2.351
LGA    S     106      S     106          2.085
LGA    R     107      R     107          2.933
LGA    S     108      S     108          2.564
LGA    D     109      D     109          4.622
LGA    V     110      V     110          1.538
LGA    L     111      L     111          3.228
LGA    L     112      L     112          3.987
LGA    G     113      G     113          4.263
LGA    L     114      L     114          2.895
LGA    L     115      L     115          3.135
LGA    T     116      T     116          2.907
LGA    G     117      G     117          2.580
LGA    N     118      N     118          1.662
LGA    F     119      F     119          3.314
LGA    E     120      E     120          1.682
LGA    A     121      A     121          0.727
LGA    S     122      S     122          1.836
LGA    G     123      G     123          2.413
LGA    R     124      R     124          2.826
LGA    H     125      H     125          2.696
LGA    K     126      K     126          4.631
LGA    L     127      L     127          5.446
LGA    K     128      K     128          4.931
LGA    L     129      L     129          5.893
LGA    P     130      P     130          8.385
LGA    G     131      G     131          5.541
LGA    I     132      I     132          3.611
LGA    D     133      D     133          4.640
LGA    H     134      H     134          5.031
LGA    Y     135      Y     135          3.353
LGA    F     136      F     136          3.411
LGA    P     137      P     137          4.692
LGA    F     138      F     138          4.845
LGA    G     139      G     139          3.300
LGA    A     140      A     140          2.888
LGA    F     141      F     141          5.431
LGA    A     142      A     142          5.250
LGA    D     143      D     143         11.812
LGA    D     144      D     144         11.875
LGA    A     145      A     145          7.995
LGA    L     146      L     146          3.715
LGA    D     147      D     147          4.407
LGA    R     148      R     148          8.588
LGA    N     149      N     149          7.889
LGA    E     150      E     150          3.635
LGA    L     151      L     151          6.922
LGA    P     152      P     152          6.476
LGA    H     153      H     153          6.108
LGA    I     154      I     154          6.565
LGA    A     155      A     155          6.753
LGA    L     156      L     156          7.266
LGA    E     157      E     157          7.672
LGA    R     158      R     158          6.284
LGA    A     159      A     159          6.545
LGA    R     160      R     160          9.533
LGA    R     161      R     161          9.350
LGA    M     162      M     162          6.536
LGA    T     163      T     163          4.769
LGA    G     164      G     164          3.610
LGA    A     165      A     165          3.918
LGA    N     166      N     166          6.085
LGA    Y     167      Y     167          6.127
LGA    S     168      S     168          5.117
LGA    P     169      P     169          5.022
LGA    S     170      S     170          5.697
LGA    Q     171      Q     171          4.863
LGA    I     172      I     172          4.834
LGA    V     173      V     173          2.753
LGA    I     174      I     174          2.287
LGA    I     175      I     175          1.692
LGA    G     176      G     176          2.585
LGA    D     177      D     177          3.596
LGA    T     178      T     178          3.078
LGA    E     179      E     179          2.428
LGA    H     180      H     180          1.198
LGA    D     181      D     181          1.351
LGA    I     182      I     182          2.641
LGA    R     183      R     183          2.100
LGA    C     184      C     184          1.075
LGA    A     185      A     185          2.085
LGA    R     186      R     186          1.783
LGA    E     187      E     187          0.619
LGA    L     188      L     188          1.298
LGA    D     189      D     189          1.316
LGA    A     190      A     190          2.048
LGA    R     191      R     191          2.695
LGA    S     192      S     192          6.642
LGA    I     193      I     193          9.882
LGA    A     194      A     194          9.285
LGA    V     195      V     195          9.627
LGA    A     196      A     196         10.729
LGA    T     197      T     197          6.526
LGA    G     198      G     198          3.707
LGA    N     199      N     199          7.789
LGA    F     200      F     200          8.525
LGA    T     201      T     201          5.212
LGA    M     202      M     202          2.351
LGA    E     203      E     203          2.500
LGA    E     204      E     204          3.841
LGA    L     205      L     205          2.407
LGA    A     206      A     206          3.104
LGA    R     207      R     207          4.377
LGA    H     208      H     208          2.356
LGA    K     209      K     209          4.324
LGA    P     210      P     210          3.263
LGA    G     211      G     211          3.084
LGA    T     212      T     212          5.985
LGA    L     213      L     213          7.329
LGA    F     214      F     214          7.431
LGA    K     215      K     215          6.646
LGA    N     216      N     216          8.263
LGA    F     217      F     217          8.593
LGA    A     218      A     218         12.981
LGA    E     219      E     219         11.376
LGA    T     220      T     220         12.579
LGA    D     221      D     221         11.617
LGA    E     222      E     222         10.480
LGA    V     223      V     223         12.096
LGA    L     224      L     224         12.456
LGA    A     225      A     225         10.795
LGA    S     226      S     226         11.499
LGA    I     227      I     227         13.184
LGA    L     228      L     228         12.224
LGA    T     229      T     229          9.751

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0     69    2.70    39.542    33.778     2.466

LGA_LOCAL      RMSD =  2.698  Number of atoms =   69  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.210  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  5.915  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.859571 * X  +  -0.213733 * Y  +   0.464172 * Z  +  18.589584
  Y_new =  -0.327828 * X  +   0.466148 * Y  +   0.821727 * Z  +  40.126282
  Z_new =  -0.392002 * X  +  -0.858501 * Y  +   0.330620 * Z  +  21.806623 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.203190    1.938403  [ DEG:   -68.9377    111.0623 ]
  Theta =   0.402807    2.738786  [ DEG:    23.0792    156.9209 ]
  Phi   =  -0.364357    2.777236  [ DEG:   -20.8761    159.1239 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0330TS168_3-D1                               
REMARK     2: T0330_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0330TS168_3-D1.T0330_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0   69   2.70  33.778     5.91
REMARK  ---------------------------------------------------------- 
MOLECULE T0330TS168_3-D1
PFRMAT TS
TARGET T0330
MODEL 3
PARENT N/A
ATOM      2  CA  SER     2      19.596  41.995  37.130  1.00 25.00           C
ATOM      3  CA  ARG     3      21.068  45.339  35.885  1.00 25.00           C
ATOM      4  CA  THR     4      22.604  48.541  34.437  1.00 25.00           C
ATOM      5  CA  LEU     5      23.449  49.998  31.090  1.00 25.00           C
ATOM      6  CA  VAL     6      21.772  46.968  29.416  1.00 25.00           C
ATOM      7  CA  LEU     7      22.206  44.651  26.431  1.00 25.00           C
ATOM      8  CA  PHE     8      19.678  43.474  23.844  1.00 25.00           C
ATOM      9  CA  ASP     9      21.680  42.560  20.813  1.00 25.00           C
ATOM     10  CA  ILE    10      20.408  39.004  20.544  1.00 25.00           C
ATOM     11  CA  ASP    11      18.886  40.323  17.285  1.00 25.00           C
ATOM     12  CA  GLY    12      16.353  42.231  19.419  1.00 25.00           C
ATOM     13  CA  THR    13      16.766  44.924  16.683  1.00 25.00           C
ATOM     14  CA  LEU    14      16.133  42.966  13.474  1.00 25.00           C
ATOM     15  CA  LEU    15      15.748  39.180  13.372  1.00 25.00           C
ATOM     16  CA  LYS    16      18.941  37.249  12.753  1.00 25.00           C
ATOM     92  CA  THR    92       6.295  39.823  19.977  1.00 25.00           C
ATOM     93  CA  LEU    93       9.520  41.797  19.961  1.00 25.00           C
ATOM     94  CA  LEU    94      12.116  39.223  21.047  1.00 25.00           C
ATOM     95  CA  GLU    95      11.327  37.705  24.414  1.00 25.00           C
ATOM     96  CA  GLY    96      14.748  38.081  26.145  1.00 25.00           C
ATOM     97  CA  VAL    97      14.417  41.643  24.891  1.00 25.00           C
ATOM     98  CA  ARG    98      11.030  43.416  24.669  1.00 25.00           C
ATOM     99  CA  GLU    99      10.161  42.253  28.213  1.00 25.00           C
ATOM    100  CA  LEU   100      13.533  43.542  29.490  1.00 25.00           C
ATOM    101  CA  LEU   101      12.915  46.917  27.789  1.00 25.00           C
ATOM    102  CA  ASP   102       9.441  47.114  29.388  1.00 25.00           C
ATOM    103  CA  ALA   103      10.950  46.329  32.820  1.00 25.00           C
ATOM    104  CA  LEU   104      13.583  49.064  32.315  1.00 25.00           C
ATOM    105  CA  SER   105      10.844  51.558  31.345  1.00 25.00           C
ATOM    106  CA  SER   106       8.845  50.617  34.474  1.00 25.00           C
ATOM    107  CA  ARG   107      11.962  51.108  36.643  1.00 25.00           C
ATOM    108  CA  SER   108      12.149  54.640  35.143  1.00 25.00           C
ATOM    109  CA  ASP   109      13.836  55.610  31.827  1.00 25.00           C
ATOM    110  CA  VAL   110      16.982  54.205  30.294  1.00 25.00           C
ATOM    111  CA  LEU   111      18.422  51.958  27.545  1.00 25.00           C
ATOM    112  CA  LEU   112      17.822  48.357  26.601  1.00 25.00           C
ATOM    113  CA  GLY   113      20.256  48.604  23.710  1.00 25.00           C
ATOM    114  CA  LEU   114      19.910  47.248  20.154  1.00 25.00           C
ATOM    115  CA  LEU   115      20.993  47.814  16.518  1.00 25.00           C
ATOM    116  CA  THR   116      22.230  44.327  15.525  1.00 25.00           C
ATOM    117  CA  GLY   117      23.417  43.405  12.028  1.00 25.00           C
ATOM    118  CA  ASN   118      20.102  44.507  10.482  1.00 25.00           C
ATOM    119  CA  PHE   119      20.577  48.286  11.122  1.00 25.00           C
ATOM    120  CA  GLU   120      18.024  50.111   8.948  1.00 25.00           C
ATOM    121  CA  ALA   121      14.406  49.361   7.940  1.00 25.00           C
ATOM    122  CA  SER   122      14.537  46.042   9.845  1.00 25.00           C
ATOM    123  CA  GLY   123      15.905  47.843  12.936  1.00 25.00           C
ATOM    124  CA  ARG   124      13.095  50.434  12.700  1.00 25.00           C
ATOM    125  CA  HIS   125      10.499  47.631  12.436  1.00 25.00           C
ATOM    126  CA  LYS   126      12.007  45.910  15.507  1.00 25.00           C
ATOM    127  CA  LEU   127      11.876  49.208  17.449  1.00 25.00           C
ATOM    128  CA  LYS   128       8.210  49.681  16.448  1.00 25.00           C
ATOM    129  CA  LEU   129       7.411  46.117  17.598  1.00 25.00           C
ATOM    130  CA  PRO   130       5.157  47.867  20.141  1.00 25.00           C
ATOM    131  CA  GLY   131       7.327  47.094  23.168  1.00 25.00           C
ATOM    132  CA  ILE   132      10.863  47.848  21.988  1.00 25.00           C
ATOM    133  CA  ASP   133       9.549  51.316  21.290  1.00 25.00           C
ATOM    134  CA  HIS   134      10.246  52.072  24.979  1.00 25.00           C
ATOM    135  CA  TYR   135      13.964  51.313  24.458  1.00 25.00           C
ATOM    136  CA  PHE   136      15.389  48.691  22.171  1.00 25.00           C
ATOM    137  CA  PRO   137      16.364  51.694  19.963  1.00 25.00           C
ATOM    138  CA  PHE   138      18.071  53.585  22.731  1.00 25.00           C
ATOM    139  CA  GLY   139      20.827  52.515  20.344  1.00 25.00           C
ATOM    140  CA  ALA   140      23.317  51.921  17.510  1.00 25.00           C
ATOM    141  CA  PHE   141      26.389  50.804  15.701  1.00 25.00           C
ATOM    142  CA  ALA   142      25.247  48.052  13.378  1.00 25.00           C
ATOM    143  CA  ASP   143      28.360  46.892  15.184  1.00 25.00           C
ATOM    144  CA  ASP   144      28.486  44.240  12.415  1.00 25.00           C
ATOM    145  CA  ALA   145      31.212  46.143  10.591  1.00 25.00           C
ATOM    146  CA  LEU   146      28.625  47.102   7.972  1.00 25.00           C
ATOM    147  CA  ASP   147      28.965  50.723   7.063  1.00 25.00           C
ATOM    148  CA  ARG   148      26.336  53.396   7.283  1.00 25.00           C
ATOM    149  CA  ASN   149      28.390  54.624  10.237  1.00 25.00           C
ATOM    150  CA  GLU   150      32.132  53.955  10.197  1.00 25.00           C
ATOM    151  CA  LEU   151      33.503  50.605  11.401  1.00 25.00           C
ATOM    152  CA  PRO   152      32.636  50.136  15.016  1.00 25.00           C
ATOM    153  CA  HIS   153      34.088  53.599  15.562  1.00 25.00           C
ATOM    154  CA  ILE   154      33.659  57.116  17.017  1.00 25.00           C
ATOM    155  CA  ALA   155      30.303  57.482  15.208  1.00 25.00           C
ATOM    156  CA  LEU   156      29.164  54.096  16.584  1.00 25.00           C
ATOM    157  CA  GLU   157      30.181  55.163  20.119  1.00 25.00           C
ATOM    158  CA  ARG   158      28.234  58.436  19.718  1.00 25.00           C
ATOM    159  CA  ALA   159      25.158  56.489  18.526  1.00 25.00           C
ATOM    160  CA  ARG   160      25.440  54.149  21.545  1.00 25.00           C
ATOM    161  CA  ARG   161      25.683  57.166  23.892  1.00 25.00           C
ATOM    162  CA  MET   162      22.584  58.716  22.262  1.00 25.00           C
ATOM    163  CA  THR   163      19.756  59.496  24.743  1.00 25.00           C
ATOM    164  CA  GLY   164      20.778  62.922  26.163  1.00 25.00           C
ATOM    165  CA  ALA   165      24.194  61.266  26.375  1.00 25.00           C
ATOM    166  CA  ASN   166      25.299  63.220  23.308  1.00 25.00           C
ATOM    167  CA  TYR   167      28.638  61.621  24.043  1.00 25.00           C
ATOM    168  CA  SER   168      31.302  59.917  26.140  1.00 25.00           C
ATOM    169  CA  PRO   169      30.558  56.281  25.308  1.00 25.00           C
ATOM    170  CA  SER   170      28.825  56.263  28.679  1.00 25.00           C
ATOM    171  CA  GLN   171      26.844  53.239  27.532  1.00 25.00           C
ATOM    172  CA  ILE   172      23.797  51.595  25.851  1.00 25.00           C
ATOM    173  CA  VAL   173      25.673  48.290  25.716  1.00 25.00           C
ATOM    174  CA  ILE   174      28.456  46.153  24.221  1.00 25.00           C
ATOM    175  CA  ILE   175      26.190  43.203  23.522  1.00 25.00           C
ATOM    176  CA  GLY   176      27.597  39.975  22.014  1.00 25.00           C
ATOM    177  CA  ASP   177      29.939  38.482  19.414  1.00 25.00           C
ATOM    178  CA  THR   178      31.268  38.696  15.867  1.00 25.00           C
ATOM    179  CA  GLU   179      34.314  40.683  16.743  1.00 25.00           C
ATOM    180  CA  HIS   180      31.973  43.662  16.185  1.00 25.00           C
ATOM    181  CA  ASP   181      31.140  43.739  19.921  1.00 25.00           C
ATOM    182  CA  ILE   182      34.872  43.671  20.779  1.00 25.00           C
ATOM    183  CA  ARG   183      35.511  46.555  18.343  1.00 25.00           C
ATOM    184  CA  CYS   184      32.659  48.559  19.929  1.00 25.00           C
ATOM    185  CA  ALA   185      34.112  47.917  23.414  1.00 25.00           C
ATOM    186  CA  ARG   186      37.561  49.073  22.215  1.00 25.00           C
ATOM    187  CA  GLU   187      36.011  52.251  20.745  1.00 25.00           C
ATOM    188  CA  LEU   188      34.915  53.429  24.177  1.00 25.00           C
ATOM    189  CA  ASP   189      34.895  52.227  27.747  1.00 25.00           C
ATOM    190  CA  ALA   190      31.347  51.640  29.164  1.00 25.00           C
ATOM    191  CA  ARG   191      31.445  48.724  26.772  1.00 25.00           C
ATOM    192  CA  SER   192      30.327  51.257  24.246  1.00 25.00           C
ATOM    193  CA  ILE   193      27.996  49.976  21.464  1.00 25.00           C
ATOM    194  CA  ALA   194      26.659  46.744  19.932  1.00 25.00           C
ATOM    195  CA  VAL   195      26.329  43.324  18.205  1.00 25.00           C
ATOM    196  CA  ALA   196      26.085  40.533  15.696  1.00 25.00           C
ATOM    197  CA  THR   197      25.075  37.886  18.165  1.00 25.00           C
ATOM    198  CA  GLY   198      25.072  35.677  21.311  1.00 25.00           C
ATOM    199  CA  ASN   199      25.568  33.083  24.061  1.00 25.00           C
ATOM    200  CA  PHE   200      27.386  35.472  26.398  1.00 25.00           C
ATOM    201  CA  THR   201      29.812  32.585  26.762  1.00 25.00           C
ATOM    202  CA  MET   202      31.428  31.785  23.407  1.00 25.00           C
ATOM    203  CA  GLU   203      34.967  32.274  24.788  1.00 25.00           C
ATOM    204  CA  GLU   204      35.463  35.311  22.508  1.00 25.00           C
ATOM    205  CA  LEU   205      32.133  36.780  23.699  1.00 25.00           C
ATOM    206  CA  ALA   206      33.174  36.247  27.346  1.00 25.00           C
ATOM    207  CA  ARG   207      36.523  37.976  26.669  1.00 25.00           C
ATOM    208  CA  HIS   208      37.215  40.854  24.349  1.00 25.00           C
ATOM    209  CA  LYS   209      34.606  42.983  25.995  1.00 25.00           C
ATOM    210  CA  PRO   210      31.007  41.773  26.010  1.00 25.00           C
ATOM    211  CA  GLY   211      30.323  42.190  29.773  1.00 25.00           C
ATOM    212  CA  THR   212      28.383  45.232  28.623  1.00 25.00           C
ATOM    213  CA  LEU   213      25.286  43.011  28.494  1.00 25.00           C
ATOM    214  CA  PHE   214      21.840  41.410  28.401  1.00 25.00           C
ATOM    215  CA  LYS   215      23.215  38.329  30.158  1.00 25.00           C
ATOM    216  CA  ASN   216      22.955  39.149  33.807  1.00 25.00           C
ATOM    217  CA  PHE   217      22.673  42.923  33.373  1.00 25.00           C
ATOM    218  CA  ALA   218      22.546  43.858  37.085  1.00 25.00           C
ATOM    219  CA  GLU   219      26.025  42.345  37.611  1.00 25.00           C
ATOM    220  CA  THR   220      27.366  44.328  34.622  1.00 25.00           C
ATOM    221  CA  ASP   221      25.841  47.543  36.039  1.00 25.00           C
ATOM    222  CA  GLU   222      27.451  46.835  39.441  1.00 25.00           C
ATOM    223  CA  VAL   223      30.837  46.257  37.747  1.00 25.00           C
ATOM    224  CA  LEU   224      30.472  49.557  35.837  1.00 25.00           C
ATOM    225  CA  ALA   225      29.634  51.380  39.100  1.00 25.00           C
ATOM    226  CA  SER   226      32.710  49.838  40.781  1.00 25.00           C
ATOM    227  CA  ILE   227      34.901  50.941  37.840  1.00 25.00           C
ATOM    228  CA  LEU   228      33.485  54.491  38.085  1.00 25.00           C
ATOM    229  CA  THR   229      32.231  54.798  41.712  1.00 25.00           C
TER
END
