
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0330TS168_4-D1
# Molecule2: number of CA atoms  153 ( 1188),  selected  153 , name T0330_D1.pdb
# PARAMETERS: T0330TS168_4-D1.T0330_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   145         6 - 225         4.99     5.44
  LONGEST_CONTINUOUS_SEGMENT:   145         7 - 226         4.99     5.44
  LONGEST_CONTINUOUS_SEGMENT:   145         8 - 227         4.99     5.45
  LCS_AVERAGE:     93.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19        92 - 110         1.94    13.08
  LCS_AVERAGE:      7.74

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14        96 - 109         0.87    12.88
  LCS_AVERAGE:      4.68

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     S       2     S       2      3    5   53     0    3    6    7   10   11   16   17   20   35   43   48   56   64   80   87   97   99  105  114 
LCS_GDT     R       3     R       3      3    7   70     3    3    5    7   12   19   24   34   60   65   71   79   90   98  108  116  127  135  142  149 
LCS_GDT     T       4     T       4      3    7  122     3   11   12   14   17   25   42   48   65   82   89  100  107  121  129  137  143  150  150  151 
LCS_GDT     L       5     L       5      4    7  127     3   11   13   17   27   39   54   68   83   93  109  116  123  133  140  147  148  150  150  151 
LCS_GDT     V       6     V       6      4    7  145     3    3   13   16   27   39   54   68   83   93  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L       7     L       7      4    7  145     3    7    7   12   16   24   37   51   73   82   99  111  120  130  140  147  148  150  150  151 
LCS_GDT     F       8     F       8      4    7  145     3    4    7   12   22   34   51   68   83   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D       9     D       9      4    7  145     3    4    8   13   24   35   51   68   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     I      10     I      10      4    7  145     3    4   10   22   31   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D      11     D      11      4    7  145     3    4    8   22   28   38   56   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G      12     G      12      4    7  145     3    6    9   13   20   32   47   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T      13     T      13      4    7  145     3    4   11   23   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L      14     L      14      4    7  145     3    4    6   11   17   26   35   44   58   70   88  108  117  126  137  147  148  150  150  151 
LCS_GDT     L      15     L      15      3    7  145     3    3    9   16   23   38   50   62   77   85  105  115  126  133  140  147  148  150  150  151 
LCS_GDT     K      16     K      16      3    5  145     0    1    7   15   26   40   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T      92     T      92      3   19  145     1    5   12   19   32   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L      93     L      93      3   19  145     1    6    9   14   23   39   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L      94     L      94      4   19  145     0    6    8   15   27   40   54   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E      95     E      95      4   19  145     3    6   10   21   29   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G      96     G      96     14   19  145     6   12   13   16   23   35   53   62   84   93  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     V      97     V      97     14   19  145     8   12   13   21   28   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R      98     R      98     14   19  145     8   12   16   23   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E      99     E      99     14   19  145     8   12   13   16   30   42   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     100     L     100     14   19  145     8   12   13   17   30   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     101     L     101     14   19  145     8   12   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D     102     D     102     14   19  145     8   12   16   26   33   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     103     A     103     14   19  145     8   12   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     104     L     104     14   19  145     8   12   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     105     S     105     14   19  145     4   12   13   26   33   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     106     S     106     14   19  145     4   12   13   22   33   42   55   69   84   94  109  116  126  133  140  147  148  150  150  151 
LCS_GDT     R     107     R     107     14   19  145     4   12   14   26   33   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     108     S     108     14   19  145     4    5   13   26   33   42   56   69   83   93  109  116  123  133  140  147  148  150  150  151 
LCS_GDT     D     109     D     109     14   19  145     4    7   13   26   33   43   58   69   84   95  109  116  126  133  140  147  148  150  150  151 
LCS_GDT     V     110     V     110      5   19  145     3    7   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     111     L     111      4   16  145     3    4    7   15   25   39   51   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     112     L     112      5    9  145     4    5    7   11   18   31   41   56   72   90  105  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     113     G     113      5    9  145     4    5    7   12   20   34   48   60   79   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     114     L     114      5    9  145     3    5    7   15   29   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     115     L     115      5    9  145     4    6    9   22   33   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T     116     T     116      5   14  145     1    6   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     117     G     117      3   14  145     1    4   12   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     N     118     N     118      4   14  145     3    5   12   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     F     119     F     119     11   14  145     3    6   12   17   31   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     120     E     120     11   14  145     3   10   12   16   29   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     121     A     121     11   14  145     8   10   12   14   29   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     122     S     122     11   14  145     8   10   11   13   18   29   48   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     123     G     123     11   14  145     8   10   11   15   25   35   51   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     124     R     124     11   14  145     8   10   12   14   26   39   51   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     H     125     H     125     11   14  145     8   10   12   15   26   35   52   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     K     126     K     126     11   14  145     8   10   12   14   20   28   39   48   60   89  100  113  127  133  140  147  148  150  150  151 
LCS_GDT     L     127     L     127     11   14  145     8   10   12   14   18   23   35   44   57   71   88  105  121  128  138  147  148  150  150  151 
LCS_GDT     K     128     K     128     11   14  145     8   10   12   14   20   28   39   52   69   89  101  113  127  133  140  147  148  150  150  151 
LCS_GDT     L     129     L     129     11   14  145     8   10   12   15   20   28   39   48   59   80   97  112  122  131  140  147  148  150  150  151 
LCS_GDT     P     130     P     130      5   14  145     3    5    6   15   20   28   41   52   69   89  101  113  127  133  140  147  148  150  150  151 
LCS_GDT     G     131     G     131      5   13  145     3    6    8   15   20   31   41   58   76   92  104  113  127  133  140  147  148  150  150  151 
LCS_GDT     I     132     I     132      5    8  145     3    5    7   15   20   31   41   60   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D     133     D     133      5    8  145     3    5    7   12   16   24   39   46   58   76  100  112  127  133  140  147  148  150  150  151 
LCS_GDT     H     134     H     134      4    6  145     3    6    8   12   20   26   37   59   75   92  104  116  127  133  140  147  148  150  150  151 
LCS_GDT     Y     135     Y     135      4    6  145     3    4    8    9   12   19   36   66   80   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     F     136     F     136      4    6  145     3    4    8   10   12   35   48   66   80   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     P     137     P     137      4    6  145     3    4    6   10   19   26   45   66   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     F     138     F     138      3    6  145     3    5    7   11   18   28   41   52   67   89  100  113  127  133  140  147  148  150  150  151 
LCS_GDT     G     139     G     139      3    6  145     4    5    7   12   22   34   48   60   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     140     A     140      3    6  145     3    3    4   10   12   22   31   40   54   62   77   93  112  127  140  147  148  150  150  151 
LCS_GDT     F     141     F     141      3    6  145     0    3    5   10   12   15   18   25   32   40   48   62   72   94  118  127  136  146  150  151 
LCS_GDT     A     142     A     142      3    7  145     0    3    4    6   11   11   17   25   32   41   53   73   94  110  126  133  148  150  150  151 
LCS_GDT     D     143     D     143      3    7  145     3    3    4    6    7   15   23   33   41   49   62   82   99  114  134  143  148  150  150  151 
LCS_GDT     D     144     D     144      3    7  145     3    3    5    8   14   21   43   59   79   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     145     A     145      4    7  145     3    3    7   19   32   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     146     L     146      4    7  145     0    3    5    5   13   18   36   61   80   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D     147     D     147      4    7  145     3    3    5   15   23   34   47   67   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     148     R     148      4    7  145     3    3    4   10   12   18   28   51   64   81   95  115  127  133  140  147  148  150  150  151 
LCS_GDT     N     149     N     149      4    5  145     3    4    8   12   20   27   40   50   63   81  100  115  127  133  140  147  148  150  150  151 
LCS_GDT     E     150     E     150      4    5  145     3    4    7   13   20   26   35   46   69   86  100  113  125  133  140  147  148  150  150  151 
LCS_GDT     L     151     L     151      4    5  145     3    4    6   12   17   23   31   40   49   55   72   84  106  123  137  147  148  150  150  151 
LCS_GDT     P     152     P     152      4   12  145     3    4    7   13   18   30   36   51   66   89  102  114  127  133  140  147  148  150  150  151 
LCS_GDT     H     153     H     153     11   12  145    10   10   10   11   12   19   26   35   46   72   94  112  125  132  140  147  148  150  150  151 
LCS_GDT     I     154     I     154     11   12  145    10   10   10   17   24   34   46   62   80   94  107  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     155     A     155     11   12  145    10   10   13   21   26   34   49   63   76   90  106  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     156     L     156     11   12  145    10   10   10   11   12   13   18   32   49   77   94  114  125  132  140  147  148  150  150  151 
LCS_GDT     E     157     E     157     11   12  145    10   10   10   11   12   19   32   46   68   86   98  113  124  133  140  147  148  150  150  151 
LCS_GDT     R     158     R     158     11   12  145    10   10   10   12   20   26   38   61   78   92  104  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     159     A     159     11   12  145    10   10   10   11   15   31   46   62   75   92  106  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     160     R     160     11   12  145    10   10   10   11   12   13   24   32   46   57   86  102  114  129  139  147  148  150  150  151 
LCS_GDT     R     161     R     161     11   12  145    10   10   10   11   12   19   35   46   59   73   91  102  115  126  139  147  148  150  150  151 
LCS_GDT     M     162     M     162     11   12  145    10   10   10   11   18   25   35   58   74   89  100  112  127  133  140  147  148  150  150  151 
LCS_GDT     T     163     T     163     11   12  145     3    5    9   11   15   32   46   64   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     164     G     164      5   12  145     3    4    5    7   19   34   51   66   80   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     165     A     165      5    8  145     3    4    5    7   17   38   55   66   79   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     N     166     N     166      5    6  145     3    4    8   18   29   42   55   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     Y     167     Y     167      4    6  145     3    5    8   18   29   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     168     S     168      4    5  145     3    6   11   18   29   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     P     169     P     169      3   10  145     3    6   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     170     S     170      3   10  145     5    8   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     Q     171     Q     171      3   10  145     3    3    4   10   17   31   50   66   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     I     172     I     172      5   10  145     3    6   12   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     V     173     V     173      5   10  145     3    6   12   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     I     174     I     174      5   10  145     3    6   10   17   30   42   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     I     175     I     175      5   10  145     3    6   12   22   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     176     G     176      5   10  145     3    5   12   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D     177     D     177      5   15  145     3    8   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T     178     T     178     11   15  145     5    8   16   26   33   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     179     E     179     11   15  145     6   10   12   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     H     180     H     180     11   15  145     6   10   13   21   29   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D     181     D     181     11   15  145     6   10   12   14   24   33   53   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     I     182     I     182     11   15  145     6   10   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     183     R     183     11   15  145     6   10   13   19   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     C     184     C     184     11   15  145     6   10   13   17   28   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     185     A     185     11   15  145     6   10   13   21   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     186     R     186     11   15  145     5   10   12   19   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     187     E     187     11   15  145     5   10   12   15   29   39   52   70   81   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     188     L     188     11   15  145     5   10   12   16   28   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     D     189     D     189      3   15  145     3    4   10   21   26   35   53   68   81   91  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     190     A     190      4   15  145     3    7   13   21   27   43   58   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     191     R     191      4   15  145     3    6   10   21   26   35   49   67   81   91  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     192     S     192      5   15  145     4    8   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     I     193     I     193      5   10  145     4    5    8   19   30   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     194     A     194      5   10  145     4    8   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     V     195     V     195      5   10  145     4    5   15   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     196     A     196      5   10  145     3    6    9   17   23   38   55   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T     197     T     197      5   10  145     3    6   13   22   31   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     198     G     198      5   10  145     3    7   13   22   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     N     199     N     199      5    9  145     3    6    6   13   18   34   49   67   80   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     F     200     F     200      5    9  145     3    6    9   13   20   28   41   47   67   86  102  114  127  133  140  147  148  150  150  151 
LCS_GDT     T     201     T     201      3    6  145     3    3    4    8   25   35   49   67   81   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     M     202     M     202      7   14  145     5    8   16   26   33   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     203     E     203      7   14  145     5    7   10   19   29   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     204     E     204      7   14  145     5    7    8   15   27   39   55   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     205     L     205      7   14  145     5    7   12   21   27   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     206     A     206      7   14  145     5    7   12   21   31   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     R     207     R     207      7   14  145     3    7   10   21   26   39   55   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     H     208     H     208      7   14  145     3    6   12   21   31   43   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     K     209     K     209      5   14  145     3    4   10   19   27   42   55   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     P     210     P     210      4   14  145     3    4   12   14   25   39   50   68   83   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     G     211     G     211      4   14  145     3    6   16   26   33   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T     212     T     212      4   14  145     3    7   12   21   27   43   58   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     213     L     213      4   14  145     0    6   13   21   26   39   55   68   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     F     214     F     214      5   14  145     4    6   13   21   26   35   52   68   83   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     K     215     K     215      5   14  145     4    5   12   21   26   37   55   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     N     216     N     216      5   13  145     4    5    9   19   27   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     F     217     F     217      5    8  145     4    5    9   18   27   44   59   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     218     A     218      5   12  145     4    5    7   14   25   35   49   67   81   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     219     E     219     11   12  145     9   10   11   14   22   33   45   61   78   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     T     220     T     220     11   12  145     9   10   11   11   12   18   28   41   57   81   95  115  127  133  140  147  148  150  150  151 
LCS_GDT     D     221     D     221     11   12  145     9   10   11   16   22   35   56   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     E     222     E     222     11   12  145     9   10   11   15   26   43   58   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     V     223     V     223     11   12  145     9   10   11   11   15   22   37   54   74   92  106  116  127  133  140  147  148  150  150  151 
LCS_GDT     L     224     L     224     11   12  145     9   10   11   13   21   27   46   60   80   94  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     A     225     A     225     11   12  145     9   10   11   11   19   35   51   70   84   95  109  116  127  133  140  147  148  150  150  151 
LCS_GDT     S     226     S     226     11   12  145     9   10   11   11   11   18   24   35   65   74   91  112  127  133  140  147  148  150  150  151 
LCS_GDT     I     227     I     227     11   12  145     9   10   11   11   11   14   24   30   39   55   66   94  115  132  140  147  148  150  150  151 
LCS_GDT     L     228     L     228     11   12  138     8   10   11   11   13   18   25   39   51   74   86  111  123  133  140  147  148  150  150  151 
LCS_GDT     T     229     T     229     11   12  121     3    6   11   11   12   18   24   33   47   57   68  104  121  133  140  147  148  150  150  151 
LCS_AVERAGE  LCS_A:  35.39  (   4.68    7.74   93.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     12     16     26     33     44     59     70     84     95    109    116    127    133    140    147    148    150    150    151 
GDT PERCENT_CA   6.54   7.84  10.46  16.99  21.57  28.76  38.56  45.75  54.90  62.09  71.24  75.82  83.01  86.93  91.50  96.08  96.73  98.04  98.04  98.69
GDT RMS_LOCAL    0.17   0.57   1.14   1.60   1.80   2.35   2.64   2.98   3.24   3.53   3.81   3.99   4.37   4.48   4.70   4.94   4.98   5.07   5.07   5.12
GDT RMS_ALL_CA  22.98  12.68   6.15   6.21   6.20   5.56   5.65   5.56   5.68   5.56   5.57   5.50   5.46   5.45   5.43   5.44   5.44   5.43   5.43   5.43

#      Molecule1      Molecule2       DISTANCE
LGA    S       2      S       2         18.630
LGA    R       3      R       3         12.491
LGA    T       4      T       4          9.199
LGA    L       5      L       5          5.991
LGA    V       6      V       6          5.521
LGA    L       7      L       7          6.744
LGA    F       8      F       8          4.409
LGA    D       9      D       9          4.294
LGA    I      10      I      10          2.036
LGA    D      11      D      11          3.206
LGA    G      12      G      12          4.397
LGA    T      13      T      13          3.434
LGA    L      14      L      14          7.966
LGA    L      15      L      15          5.861
LGA    K      16      K      16          2.486
LGA    T      92      T      92          3.054
LGA    L      93      L      93          3.503
LGA    L      94      L      94          3.494
LGA    E      95      E      95          2.891
LGA    G      96      G      96          4.838
LGA    V      97      V      97          3.543
LGA    R      98      R      98          3.089
LGA    E      99      E      99          3.957
LGA    L     100      L     100          3.195
LGA    L     101      L     101          2.551
LGA    D     102      D     102          3.386
LGA    A     103      A     103          2.931
LGA    L     104      L     104          2.826
LGA    S     105      S     105          4.453
LGA    S     106      S     106          4.900
LGA    R     107      R     107          3.852
LGA    S     108      S     108          5.598
LGA    D     109      D     109          5.077
LGA    V     110      V     110          2.715
LGA    L     111      L     111          3.972
LGA    L     112      L     112          5.443
LGA    G     113      G     113          4.885
LGA    L     114      L     114          3.102
LGA    L     115      L     115          3.564
LGA    T     116      T     116          2.099
LGA    G     117      G     117          2.419
LGA    N     118      N     118          3.279
LGA    F     119      F     119          3.025
LGA    E     120      E     120          2.917
LGA    A     121      A     121          2.933
LGA    S     122      S     122          3.769
LGA    G     123      G     123          3.824
LGA    R     124      R     124          3.662
LGA    H     125      H     125          3.217
LGA    K     126      K     126          6.613
LGA    L     127      L     127          7.727
LGA    K     128      K     128          6.393
LGA    L     129      L     129          7.791
LGA    P     130      P     130          6.657
LGA    G     131      G     131          6.161
LGA    I     132      I     132          5.016
LGA    D     133      D     133          6.983
LGA    H     134      H     134          6.251
LGA    Y     135      Y     135          4.969
LGA    F     136      F     136          5.062
LGA    P     137      P     137          5.296
LGA    F     138      F     138          6.123
LGA    G     139      G     139          4.770
LGA    A     140      A     140          7.860
LGA    F     141      F     141         10.877
LGA    A     142      A     142          9.470
LGA    D     143      D     143          9.093
LGA    D     144      D     144          5.233
LGA    A     145      A     145          3.556
LGA    L     146      L     146          5.449
LGA    D     147      D     147          6.228
LGA    R     148      R     148          6.892
LGA    N     149      N     149          7.896
LGA    E     150      E     150          9.450
LGA    L     151      L     151         10.224
LGA    P     152      P     152          8.009
LGA    H     153      H     153          9.453
LGA    I     154      I     154          6.887
LGA    A     155      A     155          7.114
LGA    L     156      L     156          8.887
LGA    E     157      E     157          9.053
LGA    R     158      R     158          7.220
LGA    A     159      A     159          6.973
LGA    R     160      R     160          9.719
LGA    R     161      R     161         10.231
LGA    M     162      M     162          8.080
LGA    T     163      T     163          6.015
LGA    G     164      G     164          4.794
LGA    A     165      A     165          4.895
LGA    N     166      N     166          3.996
LGA    Y     167      Y     167          3.442
LGA    S     168      S     168          3.584
LGA    P     169      P     169          1.350
LGA    S     170      S     170          2.995
LGA    Q     171      Q     171          5.188
LGA    I     172      I     172          2.518
LGA    V     173      V     173          2.269
LGA    I     174      I     174          3.638
LGA    I     175      I     175          3.257
LGA    G     176      G     176          2.802
LGA    D     177      D     177          1.167
LGA    T     178      T     178          2.690
LGA    E     179      E     179          1.596
LGA    H     180      H     180          2.836
LGA    D     181      D     181          4.128
LGA    I     182      I     182          2.730
LGA    R     183      R     183          1.572
LGA    C     184      C     184          2.887
LGA    A     185      A     185          2.629
LGA    R     186      R     186          2.712
LGA    E     187      E     187          3.951
LGA    L     188      L     188          2.434
LGA    D     189      D     189          6.262
LGA    A     190      A     190          4.285
LGA    R     191      R     191          6.116
LGA    S     192      S     192          2.697
LGA    I     193      I     193          2.992
LGA    A     194      A     194          1.965
LGA    V     195      V     195          1.528
LGA    A     196      A     196          4.019
LGA    T     197      T     197          1.997
LGA    G     198      G     198          2.122
LGA    N     199      N     199          5.598
LGA    F     200      F     200          7.384
LGA    T     201      T     201          5.915
LGA    M     202      M     202          2.769
LGA    E     203      E     203          3.901
LGA    E     204      E     204          5.357
LGA    L     205      L     205          3.491
LGA    A     206      A     206          3.349
LGA    R     207      R     207          4.950
LGA    H     208      H     208          3.943
LGA    K     209      K     209          5.393
LGA    P     210      P     210          5.654
LGA    G     211      G     211          0.640
LGA    T     212      T     212          4.236
LGA    L     213      L     213          4.971
LGA    F     214      F     214          5.204
LGA    K     215      K     215          4.630
LGA    N     216      N     216          2.996
LGA    F     217      F     217          2.873
LGA    A     218      A     218          5.585
LGA    E     219      E     219          5.749
LGA    T     220      T     220          6.815
LGA    D     221      D     221          3.856
LGA    E     222      E     222          3.334
LGA    V     223      V     223          6.267
LGA    L     224      L     224          5.258
LGA    A     225      A     225          3.718
LGA    S     226      S     226          6.610
LGA    I     227      I     227          7.924
LGA    L     228      L     228          6.745
LGA    T     229      T     229          7.103

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0     70    2.98    41.667    34.253     2.271

LGA_LOCAL      RMSD =  2.983  Number of atoms =   70  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.539  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  5.415  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.005567 * X  +   0.372594 * Y  +   0.927978 * Z  +  14.724555
  Y_new =  -0.288734 * X  +  -0.887868 * Y  +   0.358221 * Z  +  45.364403
  Z_new =   0.957393 * X  +  -0.269933 * Y  +   0.102638 * Z  +  20.263224 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.207445    1.934148  [ DEG:   -69.1815    110.8185 ]
  Theta =  -1.277836   -1.863757  [ DEG:   -73.2146   -106.7854 ]
  Phi   =  -1.551518    1.590074  [ DEG:   -88.8954     91.1046 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0330TS168_4-D1                               
REMARK     2: T0330_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0330TS168_4-D1.T0330_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0   70   2.98  34.253     5.42
REMARK  ---------------------------------------------------------- 
MOLECULE T0330TS168_4-D1
PFRMAT TS
TARGET T0330
MODEL 4
PARENT N/A
ATOM      2  CA  SER     2       7.365  58.277  28.209  1.00 25.00           C
ATOM      3  CA  ARG     3      10.977  57.321  27.840  1.00 25.00           C
ATOM      4  CA  THR     4      14.725  57.375  28.383  1.00 25.00           C
ATOM      5  CA  LEU     5      17.114  55.068  26.535  1.00 25.00           C
ATOM      6  CA  VAL     6      16.871  51.436  25.393  1.00 25.00           C
ATOM      7  CA  LEU     7      16.382  47.692  25.096  1.00 25.00           C
ATOM      8  CA  PHE     8      18.517  44.556  24.843  1.00 25.00           C
ATOM      9  CA  ASP     9      18.882  43.356  21.289  1.00 25.00           C
ATOM     10  CA  ILE    10      17.472  43.163  17.781  1.00 25.00           C
ATOM     11  CA  ASP    11      18.616  41.865  14.425  1.00 25.00           C
ATOM     12  CA  GLY    12      21.672  40.777  16.478  1.00 25.00           C
ATOM     13  CA  THR    13      19.875  37.626  17.797  1.00 25.00           C
ATOM     14  CA  LEU    14      20.191  36.970  14.023  1.00 25.00           C
ATOM     15  CA  LEU    15      16.746  36.817  12.349  1.00 25.00           C
ATOM     16  CA  LYS    16      15.082  37.091  15.735  1.00 25.00           C
ATOM     92  CA  THR    92      10.924  31.483  18.602  1.00 25.00           C
ATOM     93  CA  LEU    93       9.247  34.438  20.316  1.00 25.00           C
ATOM     94  CA  LEU    94      12.739  35.889  20.249  1.00 25.00           C
ATOM     95  CA  GLU    95      13.436  34.101  23.550  1.00 25.00           C
ATOM     96  CA  GLY    96      16.447  36.300  24.226  1.00 25.00           C
ATOM     97  CA  VAL    97      15.268  39.546  22.591  1.00 25.00           C
ATOM     98  CA  ARG    98      11.800  39.000  24.121  1.00 25.00           C
ATOM     99  CA  GLU    99      13.365  38.634  27.598  1.00 25.00           C
ATOM    100  CA  LEU   100      15.340  41.874  27.077  1.00 25.00           C
ATOM    101  CA  LEU   101      12.140  43.681  25.998  1.00 25.00           C
ATOM    102  CA  ASP   102      10.326  42.379  29.110  1.00 25.00           C
ATOM    103  CA  ALA   103      13.207  43.590  31.325  1.00 25.00           C
ATOM    104  CA  LEU   104      13.071  47.036  29.660  1.00 25.00           C
ATOM    105  CA  SER   105       9.289  47.194  30.239  1.00 25.00           C
ATOM    106  CA  SER   106       9.789  46.260  33.919  1.00 25.00           C
ATOM    107  CA  ARG   107      12.448  48.992  34.277  1.00 25.00           C
ATOM    108  CA  SER   108      10.322  52.069  33.355  1.00 25.00           C
ATOM    109  CA  ASP   109      13.601  53.838  32.432  1.00 25.00           C
ATOM    110  CA  VAL   110      16.380  51.972  30.602  1.00 25.00           C
ATOM    111  CA  LEU   111      20.028  52.119  29.405  1.00 25.00           C
ATOM    112  CA  LEU   112      20.138  48.441  28.442  1.00 25.00           C
ATOM    113  CA  GLY   113      21.300  49.150  24.882  1.00 25.00           C
ATOM    114  CA  LEU   114      20.070  47.981  21.510  1.00 25.00           C
ATOM    115  CA  LEU   115      21.440  46.490  18.339  1.00 25.00           C
ATOM    116  CA  THR   116      20.933  46.860  14.601  1.00 25.00           C
ATOM    117  CA  GLY   117      22.638  44.281  12.442  1.00 25.00           C
ATOM    118  CA  ASN   118      20.295  42.766   9.799  1.00 25.00           C
ATOM    119  CA  PHE   119      21.031  46.219   8.295  1.00 25.00           C
ATOM    120  CA  GLU   120      19.726  49.593   9.469  1.00 25.00           C
ATOM    121  CA  ALA   121      16.367  48.150   8.328  1.00 25.00           C
ATOM    122  CA  SER   122      16.233  45.932  11.447  1.00 25.00           C
ATOM    123  CA  GLY   123      16.980  48.963  13.665  1.00 25.00           C
ATOM    124  CA  ARG   124      14.198  50.946  11.935  1.00 25.00           C
ATOM    125  CA  HIS   125      11.758  48.044  12.478  1.00 25.00           C
ATOM    126  CA  LYS   126      12.731  47.887  16.179  1.00 25.00           C
ATOM    127  CA  LEU   127      12.174  51.661  16.511  1.00 25.00           C
ATOM    128  CA  LYS   128       8.738  51.326  14.853  1.00 25.00           C
ATOM    129  CA  LEU   129       7.829  48.486  17.257  1.00 25.00           C
ATOM    130  CA  PRO   130       9.509  46.073  19.714  1.00 25.00           C
ATOM    131  CA  GLY   131       8.086  48.447  22.332  1.00 25.00           C
ATOM    132  CA  ILE   132      11.547  48.113  23.804  1.00 25.00           C
ATOM    133  CA  ASP   133      11.444  51.965  23.862  1.00 25.00           C
ATOM    134  CA  HIS   134      13.804  53.330  21.173  1.00 25.00           C
ATOM    135  CA  TYR   135      15.458  49.891  20.845  1.00 25.00           C
ATOM    136  CA  PHE   136      17.809  51.078  18.109  1.00 25.00           C
ATOM    137  CA  PRO   137      18.611  54.431  19.726  1.00 25.00           C
ATOM    138  CA  PHE   138      20.772  54.163  22.906  1.00 25.00           C
ATOM    139  CA  GLY   139      22.778  51.830  20.658  1.00 25.00           C
ATOM    140  CA  ALA   140      25.053  48.828  21.046  1.00 25.00           C
ATOM    141  CA  PHE   141      26.737  45.551  20.160  1.00 25.00           C
ATOM    142  CA  ALA   142      27.685  47.434  17.008  1.00 25.00           C
ATOM    143  CA  ASP   143      25.741  48.005  13.815  1.00 25.00           C
ATOM    144  CA  ASP   144      24.098  50.755  11.745  1.00 25.00           C
ATOM    145  CA  ALA   145      26.479  50.342   8.842  1.00 25.00           C
ATOM    146  CA  LEU   146      26.933  46.528   9.134  1.00 25.00           C
ATOM    147  CA  ASP   147      29.685  44.776   7.205  1.00 25.00           C
ATOM    148  CA  ARG   148      31.116  48.204   6.226  1.00 25.00           C
ATOM    149  CA  ASN   149      34.414  47.253   7.957  1.00 25.00           C
ATOM    150  CA  GLU   150      33.597  45.186  11.004  1.00 25.00           C
ATOM    151  CA  LEU   151      36.317  47.220  12.779  1.00 25.00           C
ATOM    152  CA  PRO   152      33.352  49.166  14.058  1.00 25.00           C
ATOM    153  CA  HIS   153      30.347  50.386  12.104  1.00 25.00           C
ATOM    154  CA  ILE   154      30.848  54.183  12.104  1.00 25.00           C
ATOM    155  CA  ALA   155      27.077  54.706  12.523  1.00 25.00           C
ATOM    156  CA  LEU   156      27.034  52.229  15.444  1.00 25.00           C
ATOM    157  CA  GLU   157      29.967  54.069  17.079  1.00 25.00           C
ATOM    158  CA  ARG   158      28.140  57.409  16.658  1.00 25.00           C
ATOM    159  CA  ALA   159      24.989  55.911  18.237  1.00 25.00           C
ATOM    160  CA  ARG   160      27.057  54.595  21.178  1.00 25.00           C
ATOM    161  CA  ARG   161      28.638  58.052  21.646  1.00 25.00           C
ATOM    162  CA  MET   162      25.167  59.671  21.610  1.00 25.00           C
ATOM    163  CA  THR   163      21.633  60.173  22.971  1.00 25.00           C
ATOM    164  CA  GLY   164      23.275  62.061  25.879  1.00 25.00           C
ATOM    165  CA  ALA   165      22.327  58.885  27.798  1.00 25.00           C
ATOM    166  CA  ASN   166      25.635  59.510  29.575  1.00 25.00           C
ATOM    167  CA  TYR   167      27.341  57.540  26.782  1.00 25.00           C
ATOM    168  CA  SER   168      30.755  59.193  27.500  1.00 25.00           C
ATOM    169  CA  PRO   169      31.522  55.746  28.956  1.00 25.00           C
ATOM    170  CA  SER   170      28.860  53.930  31.012  1.00 25.00           C
ATOM    171  CA  GLN   171      29.319  50.564  29.303  1.00 25.00           C
ATOM    172  CA  ILE   172      25.900  51.255  27.789  1.00 25.00           C
ATOM    173  CA  VAL   173      25.148  47.585  28.238  1.00 25.00           C
ATOM    174  CA  ILE   174      24.596  44.937  25.627  1.00 25.00           C
ATOM    175  CA  ILE   175      23.089  41.801  23.974  1.00 25.00           C
ATOM    176  CA  GLY   176      23.543  40.008  20.699  1.00 25.00           C
ATOM    177  CA  ASP   177      26.911  38.627  19.609  1.00 25.00           C
ATOM    178  CA  THR   178      28.763  39.408  16.362  1.00 25.00           C
ATOM    179  CA  GLU   179      31.856  39.258  18.451  1.00 25.00           C
ATOM    180  CA  HIS   180      34.699  41.225  16.805  1.00 25.00           C
ATOM    181  CA  ASP   181      32.325  44.157  16.150  1.00 25.00           C
ATOM    182  CA  ILE   182      31.182  44.079  19.805  1.00 25.00           C
ATOM    183  CA  ARG   183      34.830  44.082  20.970  1.00 25.00           C
ATOM    184  CA  CYS   184      35.582  47.067  18.692  1.00 25.00           C
ATOM    185  CA  ALA   185      32.550  48.936  20.098  1.00 25.00           C
ATOM    186  CA  ARG   186      33.728  48.211  23.669  1.00 25.00           C
ATOM    187  CA  GLU   187      37.228  49.501  22.803  1.00 25.00           C
ATOM    188  CA  LEU   188      35.983  52.970  23.642  1.00 25.00           C
ATOM    189  CA  ASP   189      33.276  54.063  21.238  1.00 25.00           C
ATOM    190  CA  ALA   190      30.965  53.910  24.295  1.00 25.00           C
ATOM    191  CA  ARG   191      29.184  50.573  24.035  1.00 25.00           C
ATOM    192  CA  SER   192      29.182  47.045  25.462  1.00 25.00           C
ATOM    193  CA  ILE   193      29.995  43.405  25.832  1.00 25.00           C
ATOM    194  CA  ALA   194      28.090  40.742  23.989  1.00 25.00           C
ATOM    195  CA  VAL   195      27.013  37.239  24.998  1.00 25.00           C
ATOM    196  CA  ALA   196      23.489  36.234  23.992  1.00 25.00           C
ATOM    197  CA  THR   197      22.815  34.517  20.654  1.00 25.00           C
ATOM    198  CA  GLY   198      26.234  33.575  19.442  1.00 25.00           C
ATOM    199  CA  ASN   199      26.413  30.927  22.154  1.00 25.00           C
ATOM    200  CA  PHE   200      26.564  32.277  25.747  1.00 25.00           C
ATOM    201  CA  THR   201      29.990  33.538  26.960  1.00 25.00           C
ATOM    202  CA  MET   202      32.111  33.175  23.825  1.00 25.00           C
ATOM    203  CA  GLU   203      35.751  33.552  24.953  1.00 25.00           C
ATOM    204  CA  GLU   204      36.118  36.697  22.797  1.00 25.00           C
ATOM    205  CA  LEU   205      32.911  38.140  24.314  1.00 25.00           C
ATOM    206  CA  ALA   206      34.218  37.408  27.838  1.00 25.00           C
ATOM    207  CA  ARG   207      37.533  39.132  26.994  1.00 25.00           C
ATOM    208  CA  HIS   208      37.354  42.355  24.989  1.00 25.00           C
ATOM    209  CA  LYS   209      36.706  45.226  27.352  1.00 25.00           C
ATOM    210  CA  PRO   210      33.306  46.543  28.406  1.00 25.00           C
ATOM    211  CA  GLY   211      32.952  43.093  29.966  1.00 25.00           C
ATOM    212  CA  THR   212      29.551  44.423  30.985  1.00 25.00           C
ATOM    213  CA  LEU   213      27.326  41.553  29.888  1.00 25.00           C
ATOM    214  CA  PHE   214      23.918  40.102  28.845  1.00 25.00           C
ATOM    215  CA  LYS   215      24.828  36.538  29.809  1.00 25.00           C
ATOM    216  CA  ASN   216      21.488  34.853  30.552  1.00 25.00           C
ATOM    217  CA  PHE   217      18.791  36.963  32.165  1.00 25.00           C
ATOM    218  CA  ALA   218      19.440  35.847  35.771  1.00 25.00           C
ATOM    219  CA  GLU   219      23.218  36.069  35.187  1.00 25.00           C
ATOM    220  CA  THR   220      22.811  39.592  33.738  1.00 25.00           C
ATOM    221  CA  ASP   221      20.728  40.629  36.779  1.00 25.00           C
ATOM    222  CA  GLU   222      23.412  39.230  39.125  1.00 25.00           C
ATOM    223  CA  VAL   223      26.117  41.162  37.223  1.00 25.00           C
ATOM    224  CA  LEU   224      24.047  44.373  37.491  1.00 25.00           C
ATOM    225  CA  ALA   225      23.614  43.809  41.255  1.00 25.00           C
ATOM    226  CA  SER   226      27.388  43.277  41.634  1.00 25.00           C
ATOM    227  CA  ILE   227      28.063  46.509  39.692  1.00 25.00           C
ATOM    228  CA  LEU   228      25.608  48.402  41.941  1.00 25.00           C
ATOM    229  CA  THR   229      28.000  47.563  44.815  1.00 25.00           C
TER
END
