
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  153 (  153),  selected  153 , name T0330TS168_5-D1
# Molecule2: number of CA atoms  153 ( 1188),  selected  153 , name T0330_D1.pdb
# PARAMETERS: T0330TS168_5-D1.T0330_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   127         4 - 205         5.00     5.55
  LONGEST_CONTINUOUS_SEGMENT:   127         5 - 206         4.99     5.55
  LCS_AVERAGE:     76.55

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        95 - 121         1.99     6.21
  LCS_AVERAGE:     10.03

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15        96 - 110         0.96     9.01
  LCS_AVERAGE:      5.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  153
LCS_GDT     S       2     S       2      3    5  119     1    3    3    4    6   10   14   19   22   26   31   38   45   52   60   80   89  107  117  122 
LCS_GDT     R       3     R       3      3    8  125     3    3    3    6   10   15   20   27   39   46   50   71   87   94  104  114  125  135  144  147 
LCS_GDT     T       4     T       4      5    8  127     3    4    9   17   23   34   45   55   71   84   97  105  118  127  138  143  146  148  150  150 
LCS_GDT     L       5     L       5      5    8  127     3    4    9   18   28   36   45   65   77   91  101  109  119  133  140  143  146  148  150  150 
LCS_GDT     V       6     V       6      5    8  127     3    5   13   21   29   38   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L       7     L       7      5    8  127     3    5   13   21   29   37   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     F       8     F       8      5    8  127     3    4    9   15   25   36   52   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D       9     D       9      4    8  127     3   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     I      10     I      10      4    8  127     3    4    8   18   28   43   54   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D      11     D      11      4    7  127     3    4    6    8   13   26   41   53   68   87  100  109  121  133  140  143  146  148  150  150 
LCS_GDT     G      12     G      12      4    7  127     3    4    6    8   19   31   35   45   56   66   86  108  121  133  140  143  146  148  150  150 
LCS_GDT     T      13     T      13      4    7  127     1    3    4    8   10   15   35   43   60   74   93  108  121  133  140  143  146  148  150  150 
LCS_GDT     L      14     L      14      4    7  127     4   13   25   33   39   44   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L      15     L      15      4    7  127     3    5   22   33   39   44   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     K      16     K      16      3    5  127     3    4    6   12   16   36   42   53   64   86   98  109  120  131  139  143  146  148  150  150 
LCS_GDT     T      92     T      92      3   17  127     0    3    4    8   12   36   45   57   72   84  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     L      93     L      93      3   20  127     1    7   15   23   31   47   55   67   80   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L      94     L      94      3   21  127     2    6   18   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E      95     E      95     14   27  127     7   12   21   26   38   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G      96     G      96     15   27  127     4   12   16   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     V      97     V      97     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R      98     R      98     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E      99     E      99     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     100     L     100     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     101     L     101     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     102     D     102     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     103     A     103     15   27  127     9   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     104     L     104     15   27  127     9   11   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     105     S     105     15   27  127     6   11   18   24   35   47   55   66   81   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     106     S     106     15   27  127     5   11   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     107     R     107     15   27  127     4   13   21   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     108     S     108     15   27  127     3   11   18   24   35   47   55   64   79   89  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     109     D     109     15   27  127     3    4   11   20   31   39   49   58   72   82   99  108  119  133  140  143  146  148  150  150 
LCS_GDT     V     110     V     110     15   27  127     4   11   18   24   35   47   54   64   77   91  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     111     L     111      4   27  127     3    6   16   21   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     112     L     112      4   27  127     3    7   16   21   33   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G     113     G     113      4   27  127     3    5   12   20   29   38   51   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     114     L     114      4   27  127     4   12   18   26   38   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     115     L     115      4   27  127     3    6   11   24   32   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     T     116     T     116      6   27  127     3    6   14   22   37   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G     117     G     117     14   27  127     5   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     N     118     N     118     14   27  127     3   13   22   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     F     119     F     119     14   27  127     3   13   22   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E     120     E     120     14   27  127     5   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     121     A     121     14   27  127     6   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     122     S     122     14   23  127     7   13   25   33   39   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G     123     G     123     14   23  127     7   12   25   33   39   45   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     124     R     124     14   23  127     8   12   25   33   39   45   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     H     125     H     125     14   23  127     7   13   25   33   39   45   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     K     126     K     126     14   23  127     7   13   25   33   39   44   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     127     L     127     14   23  127     7   12   22   33   39   43   52   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     K     128     K     128     14   23  127     7   13   25   33   39   44   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     129     L     129     14   23  127     5   13   25   33   39   44   53   68   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     P     130     P     130     14   23  127     5    8   14   28   39   44   52   65   82   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G     131     G     131     14   23  127     5    9   25   33   39   44   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     I     132     I     132     14   23  127     5   12   22   28   39   43   52   66   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     133     D     133     13   23  127     5    7    9   13   20   41   50   65   82   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     H     134     H     134      4   23  127     4   12   22   28   39   44   52   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     Y     135     Y     135      4   23  127     3    4    9   15   25   44   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     F     136     F     136      3   23  127     3   13   25   33   39   44   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     P     137     P     137      3   22  127     3    3    5   11   20   33   45   58   69   82   92  102  112  128  139  143  146  148  150  150 
LCS_GDT     F     138     F     138      4    8  127     3    4    7    9   13   18   24   36   44   56   65   87   92   99  110  127  133  143  147  150 
LCS_GDT     G     139     G     139      4    8  127     3    4    7   15   22   33   40   53   69   89  100  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     140     A     140      4    8  127     3    5   12   21   29   36   52   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     F     141     F     141      4    8  127     3    4   13   18   27   35   45   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     142     A     142      4    8  127     3    4    7    9   13   28   43   65   79   91  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     143     D     143      4    8  127     3    4    7    9   13   19   29   53   68   86   94  107  119  129  138  143  146  148  150  150 
LCS_GDT     D     144     D     144      4    8  127     3    8   16   24   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     145     A     145      4    8  127     3    6   16   31   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     146     L     146      4    6  127     3    4    4    5    5   20   43   65   80   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     147     D     147      4    6  127     3    4    8   17   27   35   50   66   79   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     148     R     148      5   15  127     3    6    9   12   20   30   44   62   77   86   99  109  121  133  140  143  146  148  150  150 
LCS_GDT     N     149     N     149      5   15  127     3    4    7   10   19   35   46   60   77   86  100  108  116  128  140  143  146  148  150  150 
LCS_GDT     E     150     E     150      5   15  127     3    4    5    6   13   31   42   58   77   90  100  109  118  128  140  143  146  148  150  150 
LCS_GDT     L     151     L     151     12   15  127     3    4    5    8   14   23   29   37   52   68   84   97  112  128  140  143  146  148  150  150 
LCS_GDT     P     152     P     152     12   15  127     3   11   11   12   14   30   35   44   68   83   93  109  121  133  140  143  146  148  150  150 
LCS_GDT     H     153     H     153     12   15  127    10   11   17   21   29   43   52   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     I     154     I     154     12   15  127    10   12   18   24   37   44   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     155     A     155     12   15  127    10   11   11   12   19   36   50   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     156     L     156     12   15  127    10   11   11   12   24   36   49   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E     157     E     157     12   15  127    10   11   11   17   28   43   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     158     R     158     12   15  127    10   11   11   12   24   39   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     159     A     159     12   15  127    10   11   11   12   16   34   46   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     160     R     160     12   15  127    10   11   11   12   19   36   50   67   83   92  101  109  120  130  140  143  146  148  150  150 
LCS_GDT     R     161     R     161     12   15  127    10   11   11   13   20   34   51   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     M     162     M     162     12   15  127    10   11   11   12   20   28   42   65   83   92  101  109  120  133  140  143  146  148  150  150 
LCS_GDT     T     163     T     163      5   14  127     4    5    7   13   25   43   52   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G     164     G     164      5   14  127     4    5    7   13   23   41   53   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     165     A     165      5    7  127     4    7   21   26   35   47   55   67   81   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     N     166     N     166      5    7  127     4    5   10   18   27   38   48   61   75   88  101  109  119  133  140  143  146  148  150  150 
LCS_GDT     Y     167     Y     167      3    7  127     3    4   21   26   35   47   55   68   81   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     168     S     168      3    6  127     2    5   14   24   35   47   55   66   79   90  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     P     169     P     169      3    6  127     3    7   14   24   35   47   55   67   79   90  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     170     S     170      3    9  127     3   12   16   26   35   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     Q     171     Q     171      3    9  127     3    4   12   20   35   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     I     172     I     172      5   15  127     4    5   13   21   29   36   45   67   83   92  101  109  119  133  140  143  146  148  150  150 
LCS_GDT     V     173     V     173      5   15  127     4    5   13   21   29   35   45   70   83   92  101  109  120  133  140  143  146  148  150  150 
LCS_GDT     I     174     I     174      5   15  127     4    4    9   15   22   33   45   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     I     175     I     175      5   15  127     4    4    9   14   21   33   48   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     G     176     G     176      5   15  127     3    5    9   22   37   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     177     D     177     12   15  127     3    7   22   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     T     178     T     178     12   15  127     3   13   20   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E     179     E     179     12   15  127     8   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     H     180     H     180     12   15  127     8   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     181     D     181     12   15  127     8   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     I     182     I     182     12   15  127     8   12   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     183     R     183     12   15  127     8   12   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     C     184     C     184     12   15  127     8   13   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     185     A     185     12   15  127     8   12   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     186     R     186     12   15  127     7   12   23   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E     187     E     187     12   15  127     4   12   25   33   39   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     188     L     188     12   15  127     4    7   15   29   39   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     D     189     D     189      3   15  127     9   11   15   20   30   39   51   64   72   88  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     A     190     A     190      3   15  127     3    7   14   24   35   47   55   67   79   91  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     R     191     R     191      3   15  127     3    4   10   19   28   36   45   55   69   82   99  108  119  133  140  143  146  148  150  150 
LCS_GDT     S     192     S     192      4   15  127     3    4    8   16   22   36   45   53   65   81   99  108  118  133  140  143  146  148  150  150 
LCS_GDT     I     193     I     193      4    8  127     3    4    7   11   15   21   28   38   47   59   67   86  104  116  129  140  146  148  150  150 
LCS_GDT     A     194     A     194      4    8  127     3    4    8   14   21   34   45   54   70   84  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     V     195     V     195      4    8  127     3    4    5   13   15   24   36   50   68   82   99  108  121  133  140  143  146  148  150  150 
LCS_GDT     A     196     A     196      4    8  127     3    4    5   13   15   24   37   49   63   81   96  106  119  133  140  143  146  148  150  150 
LCS_GDT     T     197     T     197      4    8  127     3    4    5   10   16   23   37   51   65   82   96  107  121  133  140  143  146  148  150  150 
LCS_GDT     G     198     G     198      3    8  127     3    6   11   23   31   43   54   67   79   90  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     N     199     N     199      3    8  127     3    4    5   10   19   26   33   45   56   66   93  108  121  133  140  143  146  148  150  150 
LCS_GDT     F     200     F     200      3    8  127     3    3    4   15   19   31   35   45   51   64   77  106  118  132  140  143  146  148  150  150 
LCS_GDT     T     201     T     201      3   12  127     3    6   10   18   27   36   47   60   72   88  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     M     202     M     202     10   12  127     5   10   10   14   28   35   45   60   72   86  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     E     203     E     203     10   12  127     7   10   10   18   28   36   45   56   69   82   99  107  121  133  140  143  146  148  150  150 
LCS_GDT     E     204     E     204     10   12  127     5   10   10   13   21   36   45   53   65   79   94  105  115  126  140  143  146  148  150  150 
LCS_GDT     L     205     L     205     10   12  127     7   10   10   17   28   36   45   60   72   86  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     A     206     A     206     10   12  127     7   10   14   19   29   36   47   60   72   86  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     R     207     R     207     10   12   63     7   10   14   17   24   36   45   53   69   81   96  105  118  132  140  143  146  148  150  150 
LCS_GDT     H     208     H     208     10   12   63     7   11   14   18   24   36   45   56   71   84   99  108  121  133  140  143  146  148  150  150 
LCS_GDT     K     209     K     209     10   12   63     7   10   10   18   24   36   45   55   71   82   99  107  119  133  140  143  146  148  150  150 
LCS_GDT     P     210     P     210     10   12   63     7   10   10   19   28   36   51   64   72   88  100  108  121  133  140  143  146  148  150  150 
LCS_GDT     G     211     G     211     10   12   63     7   10   10   15   21   35   45   53   66   82   99  108  119  133  140  143  146  148  150  150 
LCS_GDT     T     212     T     212      4   12   63     3    3    5   11   20   25   29   39   47   55   66   75   89  116  122  135  144  148  150  150 
LCS_GDT     L     213     L     213      4    9   63     3    3    5    8   12   18   23   26   32   44   55   63   72   94  111  127  135  147  150  150 
LCS_GDT     F     214     F     214      4    7   63     3    3    5    8   13   18   24   32   36   50   64   72   91  109  122  138  144  148  150  150 
LCS_GDT     K     215     K     215      4    7   63     1    3    5    9   13   17   22   27   35   44   62   73   99  109  123  138  146  148  150  150 
LCS_GDT     N     216     N     216      3    7   63     1    7   20   25   33   44   52   67   79   91  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     F     217     F     217      4    7   63     6   12   25   33   39   47   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     218     A     218      4   12   63     3    6   11   21   37   44   52   65   79   90  100  109  121  133  140  143  146  148  150  150 
LCS_GDT     E     219     E     219     11   12   63     9   11   11   11   23   30   40   58   68   82  100  109  121  133  140  143  146  148  150  150 
LCS_GDT     T     220     T     220     11   12   63     9   11   11   11   11   13   34   44   60   75   88  106  121  133  140  143  146  148  150  150 
LCS_GDT     D     221     D     221     11   12   63     9   11   11   11   24   43   51   67   78   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     E     222     E     222     11   12   63     9   12   25   33   39   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     V     223     V     223     11   12   63     9   11   11   17   30   44   52   63   75   90  100  109  121  133  140  143  146  148  150  150 
LCS_GDT     L     224     L     224     11   12   63     9   11   25   33   39   44   52   67   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     A     225     A     225     11   12   63     9   11   11   22   32   46   55   70   83   92  101  109  121  133  140  143  146  148  150  150 
LCS_GDT     S     226     S     226     11   12   63     9   11   11   11   13   18   25   41   61   86  100  109  121  133  140  143  146  148  150  150 
LCS_GDT     I     227     I     227     11   12   63     9   11   11   11   11   13   19   30   45   63   81  107  121  133  140  143  146  148  150  150 
LCS_GDT     L     228     L     228     11   12   55     9   11   11   11   15   21   30   44   75   91  101  109  120  133  140  143  146  148  150  150 
LCS_GDT     T     229     T     229     11   12   41     4   11   11   11   14   19   33   42   68   86   94  103  116  126  137  143  146  148  150  150 
LCS_AVERAGE  LCS_A:  30.68  (   5.48   10.03   76.55 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     25     33     39     47     55     70     83     92    101    109    121    133    140    143    146    148    150    150 
GDT PERCENT_CA   6.54   8.50  16.34  21.57  25.49  30.72  35.95  45.75  54.25  60.13  66.01  71.24  79.08  86.93  91.50  93.46  95.42  96.73  98.04  98.04
GDT RMS_LOCAL    0.17   0.61   1.19   1.39   1.53   2.09   2.39   3.02   3.31   3.48   3.70   3.90   4.42   4.67   4.89   4.95   5.04   5.12   5.22   5.22
GDT RMS_ALL_CA  11.24   6.37   6.23   6.22   6.26   5.86   5.77   5.94   6.12   6.05   5.83   5.78   5.55   5.53   5.54   5.54   5.53   5.53   5.53   5.53

#      Molecule1      Molecule2       DISTANCE
LGA    S       2      S       2         15.698
LGA    R       3      R       3         11.907
LGA    T       4      T       4          6.369
LGA    L       5      L       5          5.176
LGA    V       6      V       6          3.196
LGA    L       7      L       7          3.277
LGA    F       8      F       8          3.680
LGA    D       9      D       9          2.040
LGA    I      10      I      10          3.813
LGA    D      11      D      11          6.234
LGA    G      12      G      12          7.890
LGA    T      13      T      13          6.518
LGA    L      14      L      14          3.455
LGA    L      15      L      15          3.830
LGA    K      16      K      16          6.240
LGA    T      92      T      92          8.554
LGA    L      93      L      93          4.470
LGA    L      94      L      94          3.167
LGA    E      95      E      95          1.612
LGA    G      96      G      96          2.617
LGA    V      97      V      97          2.818
LGA    R      98      R      98          2.924
LGA    E      99      E      99          2.893
LGA    L     100      L     100          2.990
LGA    L     101      L     101          3.388
LGA    D     102      D     102          3.290
LGA    A     103      A     103          3.125
LGA    L     104      L     104          3.912
LGA    S     105      S     105          4.386
LGA    S     106      S     106          3.654
LGA    R     107      R     107          3.647
LGA    S     108      S     108          5.496
LGA    D     109      D     109          7.364
LGA    V     110      V     110          5.176
LGA    L     111      L     111          2.493
LGA    L     112      L     112          2.738
LGA    G     113      G     113          3.965
LGA    L     114      L     114          1.092
LGA    L     115      L     115          3.264
LGA    T     116      T     116          1.691
LGA    G     117      G     117          1.391
LGA    N     118      N     118          0.932
LGA    F     119      F     119          1.079
LGA    E     120      E     120          1.487
LGA    A     121      A     121          1.407
LGA    S     122      S     122          2.212
LGA    G     123      G     123          3.220
LGA    R     124      R     124          3.078
LGA    H     125      H     125          2.741
LGA    K     126      K     126          3.895
LGA    L     127      L     127          4.296
LGA    K     128      K     128          3.538
LGA    L     129      L     129          4.077
LGA    P     130      P     130          4.961
LGA    G     131      G     131          3.887
LGA    I     132      I     132          4.655
LGA    D     133      D     133          4.989
LGA    H     134      H     134          4.468
LGA    Y     135      Y     135          3.086
LGA    F     136      F     136          3.499
LGA    P     137      P     137          6.995
LGA    F     138      F     138          9.201
LGA    G     139      G     139          5.517
LGA    A     140      A     140          3.268
LGA    F     141      F     141          3.989
LGA    A     142      A     142          5.087
LGA    D     143      D     143          6.986
LGA    D     144      D     144          1.957
LGA    A     145      A     145          1.721
LGA    L     146      L     146          4.659
LGA    D     147      D     147          5.597
LGA    R     148      R     148          6.343
LGA    N     149      N     149          6.795
LGA    E     150      E     150          5.834
LGA    L     151      L     151          7.427
LGA    P     152      P     152          6.962
LGA    H     153      H     153          5.059
LGA    I     154      I     154          3.866
LGA    A     155      A     155          4.721
LGA    L     156      L     156          5.099
LGA    E     157      E     157          3.658
LGA    R     158      R     158          3.427
LGA    A     159      A     159          4.914
LGA    R     160      R     160          4.819
LGA    R     161      R     161          3.911
LGA    M     162      M     162          4.918
LGA    T     163      T     163          3.813
LGA    G     164      G     164          3.072
LGA    A     165      A     165          4.273
LGA    N     166      N     166          6.036
LGA    Y     167      Y     167          4.103
LGA    S     168      S     168          6.358
LGA    P     169      P     169          5.839
LGA    S     170      S     170          3.479
LGA    Q     171      Q     171          1.555
LGA    I     172      I     172          4.292
LGA    V     173      V     173          3.957
LGA    I     174      I     174          4.261
LGA    I     175      I     175          3.896
LGA    G     176      G     176          2.074
LGA    D     177      D     177          3.884
LGA    T     178      T     178          3.933
LGA    E     179      E     179          3.410
LGA    H     180      H     180          3.415
LGA    D     181      D     181          3.391
LGA    I     182      I     182          3.441
LGA    R     183      R     183          3.729
LGA    C     184      C     184          3.253
LGA    A     185      A     185          2.685
LGA    R     186      R     186          2.514
LGA    E     187      E     187          2.693
LGA    L     188      L     188          3.513
LGA    D     189      D     189          7.833
LGA    A     190      A     190          5.435
LGA    R     191      R     191          9.125
LGA    S     192      S     192          9.258
LGA    I     193      I     193         10.341
LGA    A     194      A     194          8.052
LGA    V     195      V     195          9.175
LGA    A     196      A     196         10.379
LGA    T     197      T     197          9.624
LGA    G     198      G     198          5.234
LGA    N     199      N     199          8.907
LGA    F     200      F     200          9.419
LGA    T     201      T     201          9.112
LGA    M     202      M     202          9.987
LGA    E     203      E     203         12.303
LGA    E     204      E     204         13.408
LGA    L     205      L     205         10.143
LGA    A     206      A     206         10.185
LGA    R     207      R     207         12.267
LGA    H     208      H     208         10.936
LGA    K     209      K     209         10.987
LGA    P     210      P     210          8.339
LGA    G     211      G     211          9.078
LGA    T     212      T     212         11.398
LGA    L     213      L     213         11.322
LGA    F     214      F     214          9.846
LGA    K     215      K     215          9.472
LGA    N     216      N     216          5.513
LGA    F     217      F     217          3.115
LGA    A     218      A     218          6.282
LGA    E     219      E     219          8.606
LGA    T     220      T     220          8.990
LGA    D     221      D     221          5.601
LGA    E     222      E     222          3.771
LGA    V     223      V     223          6.630
LGA    L     224      L     224          4.559
LGA    A     225      A     225          2.074
LGA    S     226      S     226          5.830
LGA    I     227      I     227          7.016
LGA    L     228      L     228          5.234
LGA    T     229      T     229          6.859

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  153  153    4.0     70    3.02    42.320    35.186     2.242

LGA_LOCAL      RMSD =  3.022  Number of atoms =   70  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.056  Number of atoms =  153 
Std_ALL_ATOMS  RMSD =  5.520  (standard rmsd on all 153 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.435697 * X  +   0.787776 * Y  +   0.435405 * Z  +  18.152182
  Y_new =  -0.483341 * X  +  -0.612841 * Y  +   0.625146 * Z  +  42.715908
  Z_new =   0.759309 * X  +   0.061925 * Y  +   0.647777 * Z  +  18.031061 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.095307   -3.046286  [ DEG:     5.4607   -174.5393 ]
  Theta =  -0.862250   -2.279342  [ DEG:   -49.4033   -130.5967 ]
  Phi   =  -2.304399    0.837193  [ DEG:  -132.0324     47.9676 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0330TS168_5-D1                               
REMARK     2: T0330_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0330TS168_5-D1.T0330_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  153  153   4.0   70   3.02  35.186     5.52
REMARK  ---------------------------------------------------------- 
MOLECULE T0330TS168_5-D1
PFRMAT TS
TARGET T0330
MODEL 5
PARENT N/A
ATOM      2  CA  SER     2      17.149  43.012  36.301  1.00 25.00           C
ATOM      3  CA  ARG     3      17.338  46.755  35.507  1.00 25.00           C
ATOM      4  CA  THR     4      19.226  49.872  34.462  1.00 25.00           C
ATOM      5  CA  LEU     5      21.523  50.378  31.484  1.00 25.00           C
ATOM      6  CA  VAL     6      20.943  48.045  28.581  1.00 25.00           C
ATOM      7  CA  LEU     7      21.842  46.935  25.067  1.00 25.00           C
ATOM      8  CA  PHE     8      24.260  44.451  23.377  1.00 25.00           C
ATOM      9  CA  ASP     9      23.353  45.838  19.920  1.00 25.00           C
ATOM     10  CA  ILE    10      22.699  42.251  18.968  1.00 25.00           C
ATOM     11  CA  ASP    11      22.734  39.148  21.185  1.00 25.00           C
ATOM     12  CA  GLY    12      22.083  40.262  24.756  1.00 25.00           C
ATOM     13  CA  THR    13      19.000  41.984  26.227  1.00 25.00           C
ATOM     14  CA  LEU    14      18.154  42.639  22.643  1.00 25.00           C
ATOM     15  CA  LEU    15      17.940  40.487  19.576  1.00 25.00           C
ATOM     16  CA  LYS    16      16.905  41.498  16.076  1.00 25.00           C
ATOM     92  CA  THR    92      20.277  33.462  19.612  1.00 25.00           C
ATOM     93  CA  LEU    93      16.503  34.259  19.749  1.00 25.00           C
ATOM     94  CA  LEU    94      18.178  36.073  22.685  1.00 25.00           C
ATOM     95  CA  GLU    95      15.544  34.109  24.488  1.00 25.00           C
ATOM     96  CA  GLY    96      14.947  37.473  26.255  1.00 25.00           C
ATOM     97  CA  VAL    97      13.783  39.335  23.151  1.00 25.00           C
ATOM     98  CA  ARG    98      10.028  39.839  23.712  1.00 25.00           C
ATOM     99  CA  GLU    99      10.536  39.589  27.500  1.00 25.00           C
ATOM    100  CA  LEU   100      13.363  42.168  27.315  1.00 25.00           C
ATOM    101  CA  LEU   101      11.121  44.516  25.284  1.00 25.00           C
ATOM    102  CA  ASP   102       8.322  44.117  27.867  1.00 25.00           C
ATOM    103  CA  ALA   103      10.783  44.901  30.693  1.00 25.00           C
ATOM    104  CA  LEU   104      11.976  48.022  28.821  1.00 25.00           C
ATOM    105  CA  SER   105       8.348  49.149  28.337  1.00 25.00           C
ATOM    106  CA  SER   106       7.663  48.632  32.069  1.00 25.00           C
ATOM    107  CA  ARG   107      10.777  50.679  32.950  1.00 25.00           C
ATOM    108  CA  SER   108       8.835  53.928  33.337  1.00 25.00           C
ATOM    109  CA  ASP   109      11.145  55.549  30.873  1.00 25.00           C
ATOM    110  CA  VAL   110      13.537  53.613  28.669  1.00 25.00           C
ATOM    111  CA  LEU   111      17.235  52.712  28.223  1.00 25.00           C
ATOM    112  CA  LEU   112      16.399  49.705  26.019  1.00 25.00           C
ATOM    113  CA  GLY   113      17.577  48.540  22.532  1.00 25.00           C
ATOM    114  CA  LEU   114      18.854  49.446  19.055  1.00 25.00           C
ATOM    115  CA  LEU   115      20.868  48.178  16.086  1.00 25.00           C
ATOM    116  CA  THR   116      23.049  45.375  14.779  1.00 25.00           C
ATOM    117  CA  GLY   117      23.567  46.917  11.323  1.00 25.00           C
ATOM    118  CA  ASN   118      20.008  45.812  10.639  1.00 25.00           C
ATOM    119  CA  PHE   119      19.127  49.113   8.929  1.00 25.00           C
ATOM    120  CA  GLU   120      17.136  52.156  10.199  1.00 25.00           C
ATOM    121  CA  ALA   121      13.684  51.081   8.935  1.00 25.00           C
ATOM    122  CA  SER   122      14.465  47.439   9.821  1.00 25.00           C
ATOM    123  CA  GLY   123      15.579  48.505  13.327  1.00 25.00           C
ATOM    124  CA  ARG   124      12.344  50.504  13.774  1.00 25.00           C
ATOM    125  CA  HIS   125      10.287  47.471  12.664  1.00 25.00           C
ATOM    126  CA  LYS   126      12.170  45.252  15.153  1.00 25.00           C
ATOM    127  CA  LEU   127      11.506  47.783  17.948  1.00 25.00           C
ATOM    128  CA  LYS   128       7.787  47.849  17.038  1.00 25.00           C
ATOM    129  CA  LEU   129       7.675  44.022  17.108  1.00 25.00           C
ATOM    130  CA  PRO   130       9.644  43.547  20.370  1.00 25.00           C
ATOM    131  CA  GLY   131       7.073  45.729  22.152  1.00 25.00           C
ATOM    132  CA  ILE   132       9.265  48.707  23.196  1.00 25.00           C
ATOM    133  CA  ASP   133       7.737  51.276  20.845  1.00 25.00           C
ATOM    134  CA  HIS   134       9.940  54.183  22.009  1.00 25.00           C
ATOM    135  CA  TYR   135      13.014  51.897  21.978  1.00 25.00           C
ATOM    136  CA  PHE   136      16.410  53.584  22.359  1.00 25.00           C
ATOM    137  CA  PRO   137      19.414  54.860  24.257  1.00 25.00           C
ATOM    138  CA  PHE   138      21.530  52.010  25.505  1.00 25.00           C
ATOM    139  CA  GLY   139      22.401  51.617  21.838  1.00 25.00           C
ATOM    140  CA  ALA   140      23.075  52.262  18.184  1.00 25.00           C
ATOM    141  CA  PHE   141      24.967  50.974  15.097  1.00 25.00           C
ATOM    142  CA  ALA   142      21.886  52.074  13.090  1.00 25.00           C
ATOM    143  CA  ASP   143      21.879  55.815  13.779  1.00 25.00           C
ATOM    144  CA  ASP   144      24.135  55.954  10.684  1.00 25.00           C
ATOM    145  CA  ALA   145      27.136  54.222   9.100  1.00 25.00           C
ATOM    146  CA  LEU   146      27.342  50.722  10.502  1.00 25.00           C
ATOM    147  CA  ASP   147      27.526  49.337   6.911  1.00 25.00           C
ATOM    148  CA  ARG   148      30.645  47.171   6.936  1.00 25.00           C
ATOM    149  CA  ASN   149      33.381  46.633   9.529  1.00 25.00           C
ATOM    150  CA  GLU   150      34.884  49.752  11.223  1.00 25.00           C
ATOM    151  CA  LEU   151      32.553  52.044   9.264  1.00 25.00           C
ATOM    152  CA  PRO   152      31.097  53.474  12.454  1.00 25.00           C
ATOM    153  CA  HIS   153      31.908  56.928  13.787  1.00 25.00           C
ATOM    154  CA  ILE   154      28.377  58.035  12.799  1.00 25.00           C
ATOM    155  CA  ALA   155      26.873  55.251  14.957  1.00 25.00           C
ATOM    156  CA  LEU   156      29.052  56.332  17.915  1.00 25.00           C
ATOM    157  CA  GLU   157      27.927  59.963  17.449  1.00 25.00           C
ATOM    158  CA  ARG   158      24.265  58.844  17.372  1.00 25.00           C
ATOM    159  CA  ALA   159      24.790  56.824  20.583  1.00 25.00           C
ATOM    160  CA  ARG   160      26.395  59.867  22.264  1.00 25.00           C
ATOM    161  CA  ARG   161      23.440  62.052  21.188  1.00 25.00           C
ATOM    162  CA  MET   162      20.987  59.472  22.600  1.00 25.00           C
ATOM    163  CA  THR   163      18.728  62.422  23.357  1.00 25.00           C
ATOM    164  CA  GLY   164      21.427  63.847  25.589  1.00 25.00           C
ATOM    165  CA  ALA   165      19.253  62.370  28.351  1.00 25.00           C
ATOM    166  CA  ASN   166      21.653  61.150  31.001  1.00 25.00           C
ATOM    167  CA  TYR   167      23.503  59.248  28.208  1.00 25.00           C
ATOM    168  CA  SER   168      25.924  62.068  28.954  1.00 25.00           C
ATOM    169  CA  PRO   169      28.237  59.311  30.300  1.00 25.00           C
ATOM    170  CA  SER   170      30.169  56.405  31.912  1.00 25.00           C
ATOM    171  CA  GLN   171      27.858  53.579  30.966  1.00 25.00           C
ATOM    172  CA  ILE   172      26.548  50.031  31.583  1.00 25.00           C
ATOM    173  CA  VAL   173      25.863  46.439  30.662  1.00 25.00           C
ATOM    174  CA  ILE   174      28.322  45.366  27.989  1.00 25.00           C
ATOM    175  CA  ILE   175      27.512  41.974  26.428  1.00 25.00           C
ATOM    176  CA  GLY   176      27.207  40.870  22.767  1.00 25.00           C
ATOM    177  CA  ASP   177      28.228  41.253  19.096  1.00 25.00           C
ATOM    178  CA  THR   178      29.255  40.677  15.475  1.00 25.00           C
ATOM    179  CA  GLU   179      32.551  42.182  16.684  1.00 25.00           C
ATOM    180  CA  HIS   180      31.454  45.237  14.651  1.00 25.00           C
ATOM    181  CA  ASP   181      29.426  46.524  17.634  1.00 25.00           C
ATOM    182  CA  ILE   182      32.458  46.057  19.927  1.00 25.00           C
ATOM    183  CA  ARG   183      34.661  47.966  17.444  1.00 25.00           C
ATOM    184  CA  CYS   184      32.093  50.804  17.310  1.00 25.00           C
ATOM    185  CA  ALA   185      32.010  50.944  21.136  1.00 25.00           C
ATOM    186  CA  ARG   186      35.836  51.091  21.238  1.00 25.00           C
ATOM    187  CA  GLU   187      35.819  53.935  18.672  1.00 25.00           C
ATOM    188  CA  LEU   188      33.447  55.963  20.945  1.00 25.00           C
ATOM    189  CA  ASP   189      31.031  57.603  23.407  1.00 25.00           C
ATOM    190  CA  ALA   190      29.521  55.811  26.427  1.00 25.00           C
ATOM    191  CA  ARG   191      25.823  54.962  26.150  1.00 25.00           C
ATOM    192  CA  SER   192      27.185  52.998  23.192  1.00 25.00           C
ATOM    193  CA  ILE   193      27.217  50.023  20.871  1.00 25.00           C
ATOM    194  CA  ALA   194      28.550  47.044  22.737  1.00 25.00           C
ATOM    195  CA  VAL   195      30.856  44.208  23.953  1.00 25.00           C
ATOM    196  CA  ALA   196      32.648  41.489  22.070  1.00 25.00           C
ATOM    197  CA  THR   197      31.118  38.102  21.280  1.00 25.00           C
ATOM    198  CA  GLY   198      28.072  35.798  21.272  1.00 25.00           C
ATOM    199  CA  ASN   199      29.333  34.457  24.523  1.00 25.00           C
ATOM    200  CA  PHE   200      30.532  37.379  26.599  1.00 25.00           C
ATOM    201  CA  THR   201      34.265  37.080  26.071  1.00 25.00           C
ATOM    202  CA  MET   202      37.149  39.340  24.940  1.00 25.00           C
ATOM    203  CA  GLU   203      39.661  40.819  27.424  1.00 25.00           C
ATOM    204  CA  GLU   204      41.024  43.141  24.701  1.00 25.00           C
ATOM    205  CA  LEU   205      37.465  44.262  23.841  1.00 25.00           C
ATOM    206  CA  ALA   206      36.763  44.958  27.541  1.00 25.00           C
ATOM    207  CA  ARG   207      39.991  47.002  27.795  1.00 25.00           C
ATOM    208  CA  HIS   208      38.141  49.513  25.638  1.00 25.00           C
ATOM    209  CA  LYS   209      35.482  50.641  28.114  1.00 25.00           C
ATOM    210  CA  PRO   210      32.833  49.209  25.880  1.00 25.00           C
ATOM    211  CA  GLY   211      29.449  50.348  27.047  1.00 25.00           C
ATOM    212  CA  THR   212      25.787  49.499  26.477  1.00 25.00           C
ATOM    213  CA  LEU   213      23.753  46.295  26.257  1.00 25.00           C
ATOM    214  CA  PHE   214      21.405  43.976  28.170  1.00 25.00           C
ATOM    215  CA  LYS   215      22.189  40.964  26.083  1.00 25.00           C
ATOM    216  CA  ASN   216      24.546  38.209  27.199  1.00 25.00           C
ATOM    217  CA  PHE   217      22.006  37.116  29.865  1.00 25.00           C
ATOM    218  CA  ALA   218      22.278  35.965  33.507  1.00 25.00           C
ATOM    219  CA  GLU   219      25.834  37.374  33.712  1.00 25.00           C
ATOM    220  CA  THR   220      24.622  40.709  32.271  1.00 25.00           C
ATOM    221  CA  ASP   221      21.783  40.815  34.840  1.00 25.00           C
ATOM    222  CA  GLU   222      24.277  40.115  37.661  1.00 25.00           C
ATOM    223  CA  VAL   223      26.545  42.925  36.386  1.00 25.00           C
ATOM    224  CA  LEU   224      23.560  45.322  36.280  1.00 25.00           C
ATOM    225  CA  ALA   225      22.623  44.352  39.865  1.00 25.00           C
ATOM    226  CA  SER   226      26.230  44.965  40.999  1.00 25.00           C
ATOM    227  CA  ILE   227      26.210  48.394  39.293  1.00 25.00           C
ATOM    228  CA  LEU   228      22.906  49.263  41.024  1.00 25.00           C
ATOM    229  CA  THR   229      23.432  47.465  44.386  1.00 25.00           C
TER
END
