
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  139 , name T0331TS168_1
# Molecule2: number of CA atoms  139 ( 1101),  selected  139 , name T0331.pdb
# PARAMETERS: T0331TS168_1.T0331.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        30 - 61          4.99    23.68
  LONGEST_CONTINUOUS_SEGMENT:    32        31 - 62          4.88    23.59
  LCS_AVERAGE:     19.72

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13         3 - 15          1.66    21.04
  LONGEST_CONTINUOUS_SEGMENT:    13         4 - 16          1.88    21.71
  LONGEST_CONTINUOUS_SEGMENT:    13        87 - 99          1.87    41.43
  LCS_AVERAGE:      5.88

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11         4 - 14          0.88    19.82
  LCS_AVERAGE:      3.78

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  139
LCS_GDT     M       1     M       1      3    5   31     3    3    3    4    4    7   12   15   17   20   20   23   24   30   35   40   47   50   53   57 
LCS_GDT     E       2     E       2      3    5   31     3    3    3    4    8   11   13   16   19   23   28   33   35   37   39   41   47   50   58   64 
LCS_GDT     L       3     L       3      3   13   31     3    3    6    9   11   14   15   18   20   24   29   33   35   37   39   41   47   51   58   64 
LCS_GDT     K       4     K       4     11   13   31     9   10   10   11   12   14   15   18   20   24   29   33   35   37   39   41   47   51   58   64 
LCS_GDT     D       5     D       5     11   13   31     9   10   10   11   12   14   15   18   20   21   29   33   35   37   39   41   47   51   58   64 
LCS_GDT     I       6     I       6     11   13   31     9   10   10   11   12   14   15   18   20   21   27   32   35   37   39   41   47   51   58   64 
LCS_GDT     M       7     M       7     11   13   31     9   10   10   11   12   14   15   18   20   24   29   33   35   37   39   41   48   53   58   64 
LCS_GDT     H       8     H       8     11   13   31     9   10   10   11   12   14   15   18   20   24   29   33   35   37   39   41   48   53   58   64 
LCS_GDT     I       9     I       9     11   13   31     9   10   10   11   12   14   15   18   20   21   28   33   35   37   39   43   48   53   58   64 
LCS_GDT     L      10     L      10     11   13   31     9   10   10   11   12   14   15   18   20   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     E      11     E      11     11   13   31     9   10   10   11   12   14   15   18   20   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     D      12     D      12     11   13   31     9   10   10   11   12   14   15   18   20   21   23   26   35   37   39   43   48   53   58   64 
LCS_GDT     M      13     M      13     11   13   31     4   10   10   11   12   14   15   18   20   21   23   25   32   37   39   43   48   53   58   64 
LCS_GDT     K      14     K      14     11   13   31     4    5    8   11   12   14   15   18   20   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     V      15     V      15      4   13   31     4    4    5   10   12   14   15   18   20   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     G      16     G      16      4   13   31     4    4    5    7    8    9   12   17   20   21   23   25   27   37   39   40   43   49   55   58 
LCS_GDT     V      17     V      17      4    8   31     3    4    6    7    8   10   12   15   17   21   23   24   26   33   37   39   42   44   51   54 
LCS_GDT     F      18     F      18      6    8   31     3    4    6    7    8   12   13   15   18   21   25   26   30   30   34   37   39   44   51   54 
LCS_GDT     A      19     A      19      6    8   31     3    4    6    7    8    8   12   18   21   23   26   28   30   32   34   37   41   44   51   54 
LCS_GDT     T      20     T      20      6    8   31     3    4    6    7    8   13   15   18   20   21   23   25   30   32   34   37   41   44   53   58 
LCS_GDT     L      21     L      21      6    8   31     3    4    6    7    8    8   15   18   20   21   23   25   27   30   32   35   41   44   53   58 
LCS_GDT     D      22     D      22      6    8   31     3    4    6    7    8    8   15   18   20   21   23   25   27   30   32   35   41   44   51   54 
LCS_GDT     E      23     E      23      6    8   31     3    4    6    7    8    8   12   15   20   21   23   25   27   30   30   35   41   44   51   58 
LCS_GDT     Y      24     Y      24      4    8   31     3    4    4    7   11   14   15   18   20   21   23   25   27   30   32   35   41   48   52   58 
LCS_GDT     G      25     G      25      4    5   31     3    4    4    4    4    6   10   10   19   24   29   33   35   37   39   41   45   49   55   58 
LCS_GDT     N      26     N      26      4    5   31     3    4    4    5    6   10   14   17   20   24   29   33   35   37   39   41   47   51   55   58 
LCS_GDT     P      27     P      27      4    5   31     3    4    5    5    7    9   11   14   19   24   29   33   35   37   39   41   48   53   58   64 
LCS_GDT     H      28     H      28      4    4   31     0    3    5    6    7   10   11   15   19   24   29   33   35   37   39   41   48   51   58   64 
LCS_GDT     A      29     A      29      4    4   31     0    3    5    5    7    9   14   15   19   24   29   33   35   37   39   41   48   53   58   64 
LCS_GDT     R      30     R      30      4    4   32     0    3    5    5   10   12   14   16   19   24   29   33   35   37   39   41   48   53   58   64 
LCS_GDT     H      31     H      31      3    3   32     1    3    3    8    9   13   15   17   21   23   26   28   31   33   37   41   47   51   55   59 
LCS_GDT     A      32     A      32      3    3   32     1    4    4    5    8   12   15   17   21   23   26   28   31   33   37   41   47   51   56   63 
LCS_GDT     H      33     H      33      3    3   32     3    4    4    4    6   11   14   16   19   23   25   28   31   33   37   41   48   53   58   64 
LCS_GDT     I      34     I      34      3    4   32     3    4    4    6    7   12   14   17   20   23   26   28   30   33   38   43   48   53   58   64 
LCS_GDT     T      35     T      35      3    4   32     3    4    6    6    8    9   12   17   20   23   26   28   29   33   37   41   47   51   58   64 
LCS_GDT     A      36     A      36      3    6   32     3    3    6    6    8    9   13   17   20   23   26   28   29   33   38   43   48   53   58   64 
LCS_GDT     A      37     A      37      4    6   32     3    4    5    7   10   12   14   17   20   23   26   28   32   35   39   43   48   53   58   64 
LCS_GDT     N      38     N      38      4    6   32     3    4    4    5    6    8   10   14   18   21   25   28   32   35   39   43   47   53   57   64 
LCS_GDT     E      39     E      39      4    6   32     3    4    4    5    6    7    9   11   12   17   21   22   24   28   36   37   40   44   52   56 
LCS_GDT     E      40     E      40      4    9   32     3    4    4    6   10   11   12   13   17   19   23   27   30   34   36   38   43   46   52   56 
LCS_GDT     G      41     G      41      3    9   32     0    3    7    7   10   12   13   17   20   23   26   28   32   35   39   43   45   49   54   64 
LCS_GDT     I      42     I      42      4    9   32     3    6    6    7   10   12   14   17   20   23   26   28   32   35   39   43   46   53   57   64 
LCS_GDT     F      43     F      43      6    9   32     3    4    7    7    8   12   14   17   20   23   26   28   31   35   39   43   48   53   58   64 
LCS_GDT     F      44     F      44      6    9   32     5    6    7    7    8   13   15   16   19   23   26   28   31   32   38   43   48   53   58   64 
LCS_GDT     M      45     M      45      6    9   32     5    6    7    7    9   13   15   17   21   23   26   28   31   33   37   40   45   50   53   58 
LCS_GDT     T      46     T      46      6    9   32     5    6    7    7   10   12   14   17   20   23   26   28   31   33   37   40   45   50   53   58 
LCS_GDT     S      47     S      47      6    9   32     5    6    7    7   10   12   14   17   20   23   26   28   31   33   37   39   42   44   47   52 
LCS_GDT     P      48     P      48      6    9   32     5    6    7    7   10   11   12   15   20   23   26   28   31   33   37   39   45   50   53   57 
LCS_GDT     E      49     E      49      4    9   32     3    3    5    7    8   11   12   15   18   21   24   28   31   33   37   39   45   50   54   59 
LCS_GDT     T      50     T      50      3    8   32     3    4    4    5    8   12   14   17   20   23   26   28   31   33   37   41   47   50   55   59 
LCS_GDT     H      51     H      51      7    8   32     6    7    7    9   10   12   14   17   20   23   26   28   31   33   37   41   48   53   58   64 
LCS_GDT     F      52     F      52      7    8   32     6    7    7    9   10   12   14   15   20   22   26   28   31   33   37   41   47   53   58   64 
LCS_GDT     Y      53     Y      53      7    8   32     6    7    7    9   10   12   14   17   20   23   26   28   31   33   37   40   46   50   53   59 
LCS_GDT     D      54     D      54      7    8   32     6    7    7    9   10   12   14   17   20   23   26   28   31   33   38   43   47   53   57   64 
LCS_GDT     Q      55     Q      55      7    8   32     6    7    7    9   10   12   14   15   20   23   26   28   31   33   39   43   48   53   58   64 
LCS_GDT     L      56     L      56      7    8   32     6    7    7    9   10   12   14   17   20   23   26   28   31   33   39   43   46   50   53   58 
LCS_GDT     M      57     M      57      7    8   32     3    7    7    9   10   12   14   17   20   23   26   28   31   33   37   39   45   49   53   56 
LCS_GDT     G      58     G      58      4    8   32     3    3    4    5    6    8   13   17   20   23   26   28   31   33   37   39   42   44   47   55 
LCS_GDT     D      59     D      59      4    8   32     3    3    4    6    8    9   10   15   20   23   26   28   31   33   37   39   42   44   47   51 
LCS_GDT     Q      60     Q      60      4    7   32     3    3    6    9   10   12   14   17   20   23   26   28   31   33   34   38   45   49   51   56 
LCS_GDT     R      61     R      61      4    7   32     3    4    5    7   10   10   14   16   19   22   26   28   32   35   38   43   45   49   51   56 
LCS_GDT     V      62     V      62      4    7   32     3    4    5    9   10   12   14   16   19   23   26   28   32   35   39   43   45   49   53   56 
LCS_GDT     A      63     A      63      4    7   24     3    4    5    7   10   12   14   16   19   21   24   26   32   35   39   43   45   49   53   57 
LCS_GDT     M      64     M      64      4    7   24     3    4    5    7   10   12   14   16   19   21   24   26   32   35   39   43   47   50   58   64 
LCS_GDT     T      65     T      65      4    7   27     3    4    5    7   10   12   14   16   19   21   24   26   35   37   39   43   48   53   58   64 
LCS_GDT     A      66     A      66      3    7   29     3    3    5    7   10   12   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     I      67     I      67      3    7   29     3    5    5    7   10   12   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     S      68     S      68      3    5   29     3    3    4    8    8   11   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     E      69     E      69      5    6   29     3    4    5    5    9   12   14   15   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     E      70     E      70      5    6   29     3    4    5    6    8   11   14   15   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     G      71     G      71      5    8   29     3    4    5    6    7   11   13   15   17   19   22   25   30   33   38   43   48   53   58   64 
LCS_GDT     Y      72     Y      72      5    8   29     3    4    5    5    7    8   10   12   14   18   19   23   26   30   37   40   45   49   55   57 
LCS_GDT     L      73     L      73      5    8   29     3    4    5    6    7   10   13   15   17   19   22   25   28   31   33   38   47   51   55   59 
LCS_GDT     I      74     I      74      4    8   29     3    4    4    5    7   10   13   15   17   19   22   25   28   31   37   40   47   51   55   57 
LCS_GDT     Q      75     Q      75      4    8   29     3    4    4    6    7    9   12   15   17   19   22   25   28   31   37   41   47   53   57   64 
LCS_GDT     V      76     V      76      4    8   29     3    4    4    6    7    9   12   15   17   19   22   25   30   33   37   41   48   53   58   64 
LCS_GDT     V      77     V      77      4    8   29     2    4    6    6    9   12   14   15   17   19   22   25   28   34   38   43   48   53   58   64 
LCS_GDT     R      78     R      78      5    8   29     3    4    6    6    9   12   13   15   17   19   22   25   32   35   39   43   48   53   58   64 
LCS_GDT     V      79     V      79      5    8   29     3    4    6    6    9   12   14   15   17   19   22   25   28   35   39   43   48   53   58   64 
LCS_GDT     E      80     E      80      5    8   29     3    4    5    6    9   12   14   15   17   20   22   25   29   35   39   43   48   53   58   64 
LCS_GDT     G      81     G      81      5    8   29     3    4    6    6    9   12   14   15   17   19   22   25   27   33   38   43   48   53   58   64 
LCS_GDT     T      82     T      82      5    8   29     0    3    5    6    7   12   14   15   17   19   22   25   26   32   37   41   47   50   55   61 
LCS_GDT     A      83     A      83      3    8   29     2    3    5    6    8   12   14   15   17   19   22   25   26   28   29   35   40   45   52   57 
LCS_GDT     R      84     R      84      3    8   29     0    3    4    6    9   12   14   15   17   19   22   25   26   28   29   35   37   43   48   52 
LCS_GDT     P      85     P      85      3    8   29     2    3    5    6    9   12   14   15   17   19   22   25   26   28   29   35   36   39   43   47 
LCS_GDT     V      86     V      86      4    6   29     3    3    5    6    8   12   14   15   17   19   22   25   26   28   29   35   36   39   43   47 
LCS_GDT     E      87     E      87      4   13   29     3    3    7   10   11   12   14   15   17   19   22   25   26   28   29   35   36   39   43   47 
LCS_GDT     N      88     N      88      8   13   29     6    8    8   10   11   12   13   15   17   19   22   25   26   28   29   37   38   40   47   48 
LCS_GDT     D      89     D      89      8   13   29     5    8    9   10   11   12   13   14   16   19   25   26   29   32   34   37   42   43   47   48 
LCS_GDT     Y      90     Y      90      8   13   29     6    8    9   10   11   12   14   15   17   19   22   25   28   31   35   39   42   44   47   51 
LCS_GDT     L      91     L      91      8   13   29     6    8    9   10   11   12   13   15   17   21   24   26   28   33   37   39   42   44   47   51 
LCS_GDT     K      92     K      92      8   13   29     6    8    9   10   11   12   13   15   21   23   26   28   30   33   37   39   42   44   47   51 
LCS_GDT     T      93     T      93      8   13   29     6    8    9   10   11   12   13   17   21   23   26   28   30   33   37   39   42   44   47   51 
LCS_GDT     V      94     V      94      8   13   29     6    8    9   10   11   12   13   15   16   21   24   26   28   33   37   39   41   44   47   51 
LCS_GDT     F      95     F      95      8   13   27     4    8    9   10   11   12   13   17   21   23   26   28   30   33   36   39   41   44   47   51 
LCS_GDT     A      96     A      96      8   13   27     3    5    9   10   11   13   15   17   21   23   26   28   30   32   34   37   38   44   46   51 
LCS_GDT     D      97     D      97      4   13   27     3    3    5    8    9   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     N      98     N      98      4   13   27     3    5    9   10   11   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     P      99     P      99      4   13   27     3    3    7   10   11   13   15   16   19   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     Y     100     Y     100      3    8   27     3    3    4    7    9   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     Y     101     Y     101      6    8   27     5    5    6    8    9   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     Q     102     Q     102      6    8   27     5    5    6    7    9   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     H     103     H     103      6    8   27     5    5    6    6    9   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     I     104     I     104      6    7   27     5    5    6    8    8   13   15   17   21   23   26   28   30   32   34   37   38   39   44   47 
LCS_GDT     Y     105     Y     105      6    7   27     5    5    6    6    8   13   15   15   17   20   25   28   30   32   34   37   38   39   44   47 
LCS_GDT     K     106     K     106      6    7   27     3    3    6    8    8   11   15   15   17   20   22   26   30   32   34   37   38   39   44   47 
LCS_GDT     T     112     T     112      3    5   27     2    3    5    6    8    9   12   14   17   23   26   28   30   32   34   37   38   39   40   41 
LCS_GDT     M     113     M     113      3    5   27     0    3    5    6    8   10   12   14   21   23   26   28   30   32   34   37   38   39   40   41 
LCS_GDT     Q     114     Q     114      3    8   27     2    3    5    6    8   10   12   14   21   23   26   28   30   32   34   38   39   43   45   46 
LCS_GDT     V     115     V     115      5    8   27     4    5    6    7    8   12   13   17   21   23   26   28   31   32   34   38   39   43   47   51 
LCS_GDT     F     116     F     116      5    8   27     4    5    6    7    8   11   13   17   21   23   26   28   31   32   37   39   42   44   47   51 
LCS_GDT     Q     117     Q     117      5    8   27     4    5    6    7    8   10   13   17   21   23   26   28   30   32   37   39   43   49   53   59 
LCS_GDT     I     118     I     118      5    8   27     4    5    6    7    8   10   13   17   21   23   26   28   30   33   37   41   47   50   58   64 
LCS_GDT     Y     119     Y     119      5    8   27     3    5    6    7    8   10   12   14   14   16   26   28   30   33   38   43   47   50   58   64 
LCS_GDT     A     120     A     120      4    8   27     3    4    5    7    8    9   12   14   15   20   24   28   30   35   39   43   48   53   58   64 
LCS_GDT     G     121     G     121      4    8   27     3    3    6    7    8   10   12   15   19   23   26   28   30   35   39   43   48   53   58   64 
LCS_GDT     H     122     H     122      4    6   27     3    3    4    4    7    8   10   13   18   22   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     G     123     G     123      5    7   27     3    5    6    7   10   11   12   16   16   20   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     F     124     F     124      5    7   17     3    5    6    7   10   11   12   16   19   19   27   33   35   37   39   43   48   53   58   64 
LCS_GDT     Y     125     Y     125      5    7   17     3    5    6    7   10   12   14   16   19   20   27   33   35   37   39   43   48   53   58   64 
LCS_GDT     H     126     H     126      5    7   17     4    5    6    7   10   12   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     S     127     S     127      5    7   17     4    5    6    7    7   11   12   16   19   20   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     L     128     L     128      4    7   17     4    5    6    8   10   12   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     T     129     T     129      4    7   17     4    5    6    8   10   11   13   16   19   24   29   33   35   37   39   43   46   53   57   64 
LCS_GDT     Q     130     Q     130      5    6   17     3    5    5    8   10   12   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     G     131     G     131      5    6   17     3    5    5    8   10   11   14   16   19   24   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     H     132     H     132      5    6   17     3    4    5    7   10   12   14   16   19   20   29   33   35   37   39   43   48   53   58   64 
LCS_GDT     K     133     K     133      5    7   17     3    4    5    6   10   11   13   16   19   20   23   25   32   36   39   43   48   53   58   64 
LCS_GDT     Y     134     Y     134      5    7   17     3    4    5    6    9   12   14   16   18   19   23   25   32   35   39   43   48   53   58   64 
LCS_GDT     I     135     I     135      5    7   17     3    3    5    6    8    9   14   15   18   19   22   25   32   35   39   43   47   51   56   63 
LCS_GDT     F     136     F     136      5    7   14     4    4    5    6    7    8    9   12   13   15   16   18   22   24   30   33   47   49   55   57 
LCS_GDT     S     137     S     137      5    7   12     4    4    5    6    8    9   10   12   15   18   22   26   28   33   37   39   42   44   52   57 
LCS_GDT     I     138     I     138      5    7   11     4    4    5    6    7    9   11   15   17   21   24   26   28   33   37   39   42   44   47   51 
LCS_GDT     G     139     G     139      5    7   10     4    4    5    6    7    8    8    9   11   21   24   26   28   33   37   39   42   44   47   51 
LCS_GDT     E     145     E     145      3    5    8     2    3    3    4    5    6    6    8    9   12   13   15   21   26   29   39   41   44   47   51 
LCS_GDT     V     146     V     146      3    5    8     0    3    3    4    5    6    6    8    8   11   13   15   17   19   21   37   38   39   47   50 
LCS_GDT     R     147     R     147      3    5    8     2    3    3    4    5    6    6    8    9   12   13   22   23   26   32   39   42   44   47   51 
LCS_GDT     A     148     A     148      3    5    8     1    3    3    4    5    6   11   14   17   21   24   26   28   33   37   39   42   44   48   52 
LCS_GDT     L     149     L     149      3    5    8     1    3    3    4    4    6    6   12   17   21   24   26   28   33   37   39   42   44   48   55 
LCS_AVERAGE  LCS_A:   9.79  (   3.78    5.88   19.72 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     10     10     11     12     14     15     18     21     24     29     33     35     37     39     43     48     53     58     64 
GDT PERCENT_CA   6.47   7.19   7.19   7.91   8.63  10.07  10.79  12.95  15.11  17.27  20.86  23.74  25.18  26.62  28.06  30.94  34.53  38.13  41.73  46.04
GDT RMS_LOCAL    0.18   0.40   0.40   0.88   1.22   1.85   2.15   2.77   3.48   3.81   4.17   4.41   4.57   4.74   4.99   5.75   6.39   6.61   7.17   7.39
GDT RMS_ALL_CA  20.78  20.54  20.54  19.82  20.00  22.00  21.90  22.02  23.11  23.23  22.99  23.04  23.12  23.30  22.84  21.22  20.25  20.04  19.78  19.87

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         11.704
LGA    E       2      E       2          6.641
LGA    L       3      L       3          3.042
LGA    K       4      K       4          3.669
LGA    D       5      D       5          2.883
LGA    I       6      I       6          3.126
LGA    M       7      M       7          2.662
LGA    H       8      H       8          2.482
LGA    I       9      I       9          2.566
LGA    L      10      L      10          2.560
LGA    E      11      E      11          2.420
LGA    D      12      D      12          2.538
LGA    M      13      M      13          1.743
LGA    K      14      K      14          3.480
LGA    V      15      V      15          2.665
LGA    G      16      G      16          4.300
LGA    V      17      V      17          6.014
LGA    F      18      F      18          5.673
LGA    A      19      A      19          3.998
LGA    T      20      T      20          2.837
LGA    L      21      L      21          3.659
LGA    D      22      D      22          3.613
LGA    E      23      E      23          4.909
LGA    Y      24      Y      24          2.214
LGA    G      25      G      25          7.433
LGA    N      26      N      26          5.535
LGA    P      27      P      27          9.548
LGA    H      28      H      28          7.729
LGA    A      29      A      29          7.170
LGA    R      30      R      30          6.272
LGA    H      31      H      31         11.223
LGA    A      32      A      32         12.715
LGA    H      33      H      33         13.309
LGA    I      34      I      34         13.080
LGA    T      35      T      35         15.647
LGA    A      36      A      36         16.496
LGA    A      37      A      37         14.020
LGA    N      38      N      38         18.356
LGA    E      39      E      39         23.555
LGA    E      40      E      40         20.892
LGA    G      41      G      41         15.808
LGA    I      42      I      42         15.702
LGA    F      43      F      43         14.936
LGA    F      44      F      44         15.825
LGA    M      45      M      45         19.498
LGA    T      46      T      46         18.869
LGA    S      47      S      47         22.252
LGA    P      48      P      48         21.388
LGA    E      49      E      49         18.265
LGA    T      50      T      50         18.006
LGA    H      51      H      51         15.139
LGA    F      52      F      52         16.452
LGA    Y      53      Y      53         22.127
LGA    D      54      D      54         19.230
LGA    Q      55      Q      55         14.630
LGA    L      56      L      56         19.676
LGA    M      57      M      57         26.114
LGA    G      58      G      58         25.934
LGA    D      59      D      59         23.598
LGA    Q      60      Q      60         23.885
LGA    R      61      R      61         19.011
LGA    V      62      V      62         14.745
LGA    A      63      A      63         11.435
LGA    M      64      M      64          9.947
LGA    T      65      T      65          6.530
LGA    A      66      A      66          8.846
LGA    I      67      I      67          8.224
LGA    S      68      S      68         10.844
LGA    E      69      E      69          9.862
LGA    E      70      E      70          9.779
LGA    G      71      G      71         11.713
LGA    Y      72      Y      72         16.065
LGA    L      73      L      73         14.778
LGA    I      74      I      74         14.709
LGA    Q      75      Q      75         15.039
LGA    V      76      V      76         15.084
LGA    V      77      V      77         14.969
LGA    R      78      R      78         14.968
LGA    V      79      V      79         16.648
LGA    E      80      E      80         14.288
LGA    G      81      G      81         16.299
LGA    T      82      T      82         15.027
LGA    A      83      A      83         21.169
LGA    R      84      R      84         23.656
LGA    P      85      P      85         26.833
LGA    V      86      V      86         32.624
LGA    E      87      E      87         38.241
LGA    N      88      N      88         41.348
LGA    D      89      D      89         42.705
LGA    Y      90      Y      90         42.422
LGA    L      91      L      91         41.229
LGA    K      92      K      92         42.461
LGA    T      93      T      93         44.465
LGA    V      94      V      94         44.180
LGA    F      95      F      95         43.870
LGA    A      96      A      96         47.136
LGA    D      97      D      97         52.315
LGA    N      98      N      98         48.679
LGA    P      99      P      99         50.216
LGA    Y     100      Y     100         46.112
LGA    Y     101      Y     101         40.152
LGA    Q     102      Q     102         43.857
LGA    H     103      H     103         42.638
LGA    I     104      I     104         36.485
LGA    Y     105      Y     105         39.150
LGA    K     106      K     106         41.411
LGA    T     112      T     112         37.898
LGA    M     113      M     113         32.678
LGA    Q     114      Q     114         29.679
LGA    V     115      V     115         25.905
LGA    F     116      F     116         20.823
LGA    Q     117      Q     117         18.093
LGA    I     118      I     118         13.340
LGA    Y     119      Y     119         16.630
LGA    A     120      A     120         13.308
LGA    G     121      G     121         11.490
LGA    H     122      H     122         10.941
LGA    G     123      G     123         12.662
LGA    F     124      F     124         12.470
LGA    Y     125      Y     125         13.593
LGA    H     126      H     126         14.005
LGA    S     127      S     127         17.122
LGA    L     128      L     128         16.727
LGA    T     129      T     129         20.911
LGA    Q     130      Q     130         20.634
LGA    G     131      G     131         20.766
LGA    H     132      H     132         20.023
LGA    K     133      K     133         19.247
LGA    Y     134      Y     134         18.342
LGA    I     135      I     135         16.350
LGA    F     136      F     136         19.150
LGA    S     137      S     137         20.028
LGA    I     138      I     138         26.113
LGA    G     139      G     139         30.875
LGA    E     145      E     145         29.565
LGA    V     146      V     146         25.426
LGA    R     147      R     147         21.938
LGA    A     148      A     148         14.708
LGA    L     149      L     149         10.323

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  139    4.0     18    2.77    14.748    12.359     0.626

LGA_LOCAL      RMSD =  2.774  Number of atoms =   18  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.512  Number of atoms =  139 
Std_ALL_ATOMS  RMSD = 14.442  (standard rmsd on all 139 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.916626 * X  +   0.304444 * Y  +   0.259057 * Z  +  33.322067
  Y_new =  -0.062300 * X  +   0.531340 * Y  +  -0.844865 * Z  +  30.775515
  Z_new =  -0.394861 * X  +  -0.790565 * Y  +  -0.468073 * Z  +  25.920267 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.105368    1.036225  [ DEG:  -120.6287     59.3713 ]
  Theta =   0.405917    2.735676  [ DEG:    23.2573    156.7427 ]
  Phi   =  -3.073731    0.067862  [ DEG:  -176.1118      3.8882 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0331TS168_1                                  
REMARK     2: T0331.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0331TS168_1.T0331.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  139   4.0   18   2.77  12.359    14.44
REMARK  ---------------------------------------------------------- 
MOLECULE T0331TS168_1
PFRMAT TS
TARGET T0331
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1       7.946  39.511  15.452  1.00 25.00           C
ATOM      2  CA  GLU     2      11.335  40.180  13.846  1.00 25.00           C
ATOM      3  CA  LEU     3      14.344  38.601  15.518  1.00 25.00           C
ATOM      4  CA  LYS     4      14.258  34.839  15.820  1.00 25.00           C
ATOM      5  CA  ASP     5      12.970  31.269  16.338  1.00 25.00           C
ATOM      6  CA  ILE     6      16.290  30.284  17.976  1.00 25.00           C
ATOM      7  CA  MET     7      16.084  33.332  20.285  1.00 25.00           C
ATOM      8  CA  HIS     8      12.496  32.395  21.243  1.00 25.00           C
ATOM      9  CA  ILE     9      13.608  28.808  21.996  1.00 25.00           C
ATOM     10  CA  LEU    10      16.469  30.126  24.174  1.00 25.00           C
ATOM     11  CA  GLU    11      14.023  32.391  26.060  1.00 25.00           C
ATOM     12  CA  ASP    12      11.670  29.422  26.624  1.00 25.00           C
ATOM     13  CA  MET    13      14.287  26.723  27.401  1.00 25.00           C
ATOM     14  CA  LYS    14      16.356  27.380  30.592  1.00 25.00           C
ATOM     15  CA  VAL    15      19.050  29.802  29.313  1.00 25.00           C
ATOM     16  CA  GLY    16      19.583  33.131  27.487  1.00 25.00           C
ATOM     17  CA  VAL    17      22.162  31.833  25.044  1.00 25.00           C
ATOM     18  CA  PHE    18      25.518  33.593  24.651  1.00 25.00           C
ATOM     19  CA  ALA    19      25.553  33.821  28.472  1.00 25.00           C
ATOM     20  CA  THR    20      28.836  34.785  30.123  1.00 25.00           C
ATOM     21  CA  LEU    21      32.548  35.270  30.976  1.00 25.00           C
ATOM     22  CA  ASP    22      32.927  38.326  33.234  1.00 25.00           C
ATOM     23  CA  GLU    23      36.607  38.216  34.181  1.00 25.00           C
ATOM     24  CA  TYR    24      38.238  40.839  36.318  1.00 25.00           C
ATOM     25  CA  GLY    25      35.685  40.568  39.074  1.00 25.00           C
ATOM     26  CA  ASN    26      36.604  36.874  39.039  1.00 25.00           C
ATOM     27  CA  PRO    27      38.004  34.460  41.625  1.00 25.00           C
ATOM     28  CA  HIS    28      34.465  33.235  41.921  1.00 25.00           C
ATOM     29  CA  ALA    29      34.209  32.555  38.161  1.00 25.00           C
ATOM     30  CA  ARG    30      30.761  30.962  38.659  1.00 25.00           C
ATOM     31  CA  HIS    31      29.624  34.003  40.692  1.00 25.00           C
ATOM     32  CA  ALA    32      30.876  36.346  37.933  1.00 25.00           C
ATOM     33  CA  HIS    33      28.987  34.299  35.303  1.00 25.00           C
ATOM     34  CA  ILE    34      25.801  34.474  37.420  1.00 25.00           C
ATOM     35  CA  THR    35      26.204  38.267  37.759  1.00 25.00           C
ATOM     36  CA  ALA    36      26.660  38.583  33.970  1.00 25.00           C
ATOM     37  CA  ALA    37      23.507  36.488  33.392  1.00 25.00           C
ATOM     38  CA  ASN    38      21.251  36.850  36.487  1.00 25.00           C
ATOM     39  CA  GLU    39      20.590  34.315  39.280  1.00 25.00           C
ATOM     40  CA  GLU    40      21.399  31.780  36.501  1.00 25.00           C
ATOM     41  CA  GLY    41      22.305  30.654  33.013  1.00 25.00           C
ATOM     42  CA  ILE    42      24.938  28.002  33.979  1.00 25.00           C
ATOM     43  CA  PHE    43      27.387  30.099  31.902  1.00 25.00           C
ATOM     44  CA  PHE    44      30.901  30.137  33.201  1.00 25.00           C
ATOM     45  CA  MET    45      34.733  30.355  33.472  1.00 25.00           C
ATOM     46  CA  THR    46      37.164  33.218  34.066  1.00 25.00           C
ATOM     47  CA  SER    47      40.474  34.705  35.208  1.00 25.00           C
ATOM     48  CA  PRO    48      41.816  35.906  38.493  1.00 25.00           C
ATOM     49  CA  GLU    49      42.420  36.997  42.068  1.00 25.00           C
ATOM     50  CA  THR    50      42.688  33.355  43.221  1.00 25.00           C
ATOM     51  CA  HIS    51      41.833  30.616  40.696  1.00 25.00           C
ATOM     52  CA  PHE    52      40.790  29.299  37.255  1.00 25.00           C
ATOM     53  CA  TYR    53      41.154  25.694  38.497  1.00 25.00           C
ATOM     54  CA  ASP    54      39.017  26.512  41.569  1.00 25.00           C
ATOM     55  CA  GLN    55      36.342  28.080  39.322  1.00 25.00           C
ATOM     56  CA  LEU    56      36.354  24.966  37.093  1.00 25.00           C
ATOM     57  CA  MET    57      37.148  21.556  38.720  1.00 25.00           C
ATOM     58  CA  GLY    58      35.878  20.214  35.386  1.00 25.00           C
ATOM     59  CA  ASP    59      32.264  20.981  34.467  1.00 25.00           C
ATOM     60  CA  GLN    60      31.934  22.182  38.039  1.00 25.00           C
ATOM     61  CA  ARG    61      30.654  25.779  38.044  1.00 25.00           C
ATOM     62  CA  VAL    62      29.346  25.350  34.514  1.00 25.00           C
ATOM     63  CA  ALA    63      28.238  24.668  30.921  1.00 25.00           C
ATOM     64  CA  MET    64      29.778  23.865  27.483  1.00 25.00           C
ATOM     65  CA  THR    65      29.947  25.836  24.194  1.00 25.00           C
ATOM     66  CA  ALA    66      28.973  28.749  21.932  1.00 25.00           C
ATOM     67  CA  ILE    67      25.368  28.632  20.608  1.00 25.00           C
ATOM     68  CA  SER    68      26.077  24.924  20.141  1.00 25.00           C
ATOM     69  CA  GLU    69      24.751  21.795  21.866  1.00 25.00           C
ATOM     70  CA  GLU    70      21.034  21.451  21.299  1.00 25.00           C
ATOM     71  CA  GLY    71      19.210  24.195  23.114  1.00 25.00           C
ATOM     72  CA  TYR    72      21.608  27.117  23.399  1.00 25.00           C
ATOM     73  CA  LEU    73      21.920  26.384  27.086  1.00 25.00           C
ATOM     74  CA  ILE    74      25.464  27.721  27.738  1.00 25.00           C
ATOM     75  CA  GLN    75      28.393  30.020  26.804  1.00 25.00           C
ATOM     76  CA  VAL    76      31.788  31.254  27.998  1.00 25.00           C
ATOM     77  CA  VAL    77      33.246  27.819  28.870  1.00 25.00           C
ATOM     78  CA  ARG    78      36.824  29.121  29.036  1.00 25.00           C
ATOM     79  CA  VAL    79      39.077  32.149  29.118  1.00 25.00           C
ATOM     80  CA  GLU    80      39.300  35.951  29.707  1.00 25.00           C
ATOM     81  CA  GLY    81      41.548  38.996  29.399  1.00 25.00           C
ATOM     82  CA  THR    82      41.092  39.598  25.666  1.00 25.00           C
ATOM     83  CA  ALA    83      44.849  40.449  25.514  1.00 25.00           C
ATOM     84  CA  ARG    84      44.319  40.897  21.768  1.00 25.00           C
ATOM     85  CA  PRO    85      42.807  42.216  18.555  1.00 25.00           C
ATOM     86  CA  VAL    86      46.254  43.716  18.070  1.00 25.00           C
ATOM     87  CA  GLU    87      46.471  42.931  14.366  1.00 25.00           C
ATOM     88  CA  ASN    88      45.077  39.656  13.090  1.00 25.00           C
ATOM     89  CA  ASP    89      45.279  35.832  13.073  1.00 25.00           C
ATOM     90  CA  TYR    90      49.080  36.006  13.514  1.00 25.00           C
ATOM     91  CA  LEU    91      48.654  38.433  16.445  1.00 25.00           C
ATOM     92  CA  LYS    92      46.097  36.080  18.054  1.00 25.00           C
ATOM     93  CA  THR    93      48.507  33.133  17.632  1.00 25.00           C
ATOM     94  CA  VAL    94      51.323  35.174  19.237  1.00 25.00           C
ATOM     95  CA  PHE    95      49.031  36.076  22.169  1.00 25.00           C
ATOM     96  CA  ALA    96      48.108  32.385  22.614  1.00 25.00           C
ATOM     97  CA  ASP    97      50.468  31.621  25.509  1.00 25.00           C
ATOM     98  CA  ASN    98      48.860  34.605  27.176  1.00 25.00           C
ATOM     99  CA  PRO    99      49.538  36.794  30.272  1.00 25.00           C
ATOM    100  CA  TYR   100      47.872  33.886  32.044  1.00 25.00           C
ATOM    101  CA  TYR   101      44.540  33.806  30.158  1.00 25.00           C
ATOM    102  CA  GLN   102      45.731  30.784  28.131  1.00 25.00           C
ATOM    103  CA  HIS   103      46.775  29.000  31.355  1.00 25.00           C
ATOM    104  CA  ILE   104      43.347  29.731  32.897  1.00 25.00           C
ATOM    105  CA  TYR   105      42.266  26.315  31.511  1.00 25.00           C
ATOM    106  CA  LYS   106      45.155  24.527  33.310  1.00 25.00           C
ATOM    107  CA  ASP   107      48.886  24.269  32.831  1.00 25.00           C
ATOM    108  CA  GLU   108      49.952  20.794  31.619  1.00 25.00           C
ATOM    109  CA  SER   109      46.761  18.803  31.892  1.00 25.00           C
ATOM    110  CA  SER   110      46.208  16.688  28.801  1.00 25.00           C
ATOM    111  CA  ASP   111      43.139  18.826  28.023  1.00 25.00           C
ATOM    112  CA  THR   112      41.657  22.269  27.209  1.00 25.00           C
ATOM    113  CA  MET   113      39.736  25.380  26.070  1.00 25.00           C
ATOM    114  CA  GLN   114      39.044  28.724  24.387  1.00 25.00           C
ATOM    115  CA  VAL   115      35.267  28.199  24.167  1.00 25.00           C
ATOM    116  CA  PHE   116      35.206  32.045  23.822  1.00 25.00           C
ATOM    117  CA  GLN   117      35.163  34.750  26.518  1.00 25.00           C
ATOM    118  CA  ILE   118      34.298  38.402  25.794  1.00 25.00           C
ATOM    119  CA  TYR   119      35.538  40.045  28.993  1.00 25.00           C
ATOM    120  CA  ALA   120      32.613  42.395  29.618  1.00 25.00           C
ATOM    121  CA  GLY   121      33.070  44.191  26.331  1.00 25.00           C
ATOM    122  CA  HIS   122      30.239  41.993  25.200  1.00 25.00           C
ATOM    123  CA  GLY   123      29.454  38.786  27.185  1.00 25.00           C
ATOM    124  CA  PHE   124      29.843  35.714  25.049  1.00 25.00           C
ATOM    125  CA  TYR   125      31.092  34.640  21.625  1.00 25.00           C
ATOM    126  CA  HIS   126      32.240  32.277  18.853  1.00 25.00           C
ATOM    127  CA  SER   127      33.194  30.759  15.576  1.00 25.00           C
ATOM    128  CA  LEU   128      30.580  32.694  13.653  1.00 25.00           C
ATOM    129  CA  THR   129      32.214  31.812  10.359  1.00 25.00           C
ATOM    130  CA  GLN   130      30.261  34.226   8.107  1.00 25.00           C
ATOM    131  CA  GLY   131      31.672  37.326   9.774  1.00 25.00           C
ATOM    132  CA  HIS   132      32.745  37.676  13.406  1.00 25.00           C
ATOM    133  CA  LYS   133      35.784  38.333  15.503  1.00 25.00           C
ATOM    134  CA  TYR   134      36.343  36.006  18.397  1.00 25.00           C
ATOM    135  CA  ILE   135      37.523  32.514  19.330  1.00 25.00           C
ATOM    136  CA  PHE   136      38.532  29.031  18.191  1.00 25.00           C
ATOM    137  CA  SER   137      37.313  26.225  15.912  1.00 25.00           C
ATOM    138  CA  ILE   138      40.009  24.021  14.526  1.00 25.00           C
ATOM    139  CA  GLY   139      39.953  22.224  11.185  1.00 25.00           C
ATOM    140  CA  GLN   140      40.313  18.934   9.235  1.00 25.00           C
ATOM    141  CA  GLY   141      40.535  15.402   7.724  1.00 25.00           C
ATOM    142  CA  GLU   142      39.973  11.673   8.209  1.00 25.00           C
ATOM    143  CA  HIS   143      36.191  11.428   8.489  1.00 25.00           C
ATOM    144  CA  SER   144      34.042  13.903   6.616  1.00 25.00           C
ATOM    145  CA  GLU   145      33.567  14.727   2.943  1.00 25.00           C
ATOM    146  CA  VAL   146      29.895  13.809   2.570  1.00 25.00           C
ATOM    147  CA  ARG   147      26.430  12.588   3.501  1.00 25.00           C
ATOM    148  CA  ALA   148      25.486  16.167   4.337  1.00 25.00           C
ATOM    149  CA  LEU   149      22.173  18.096   4.860  1.00 25.00           C
TER
END
