
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  139 , name T0331TS168_2
# Molecule2: number of CA atoms  139 ( 1101),  selected  139 , name T0331.pdb
# PARAMETERS: T0331TS168_2.T0331.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27         1 - 27          4.98    23.33
  LONGEST_CONTINUOUS_SEGMENT:    27        34 - 60          4.96    22.96
  LONGEST_CONTINUOUS_SEGMENT:    27        90 - 121         5.00    20.91
  LCS_AVERAGE:     17.97

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         4 - 17          1.61    29.07
  LCS_AVERAGE:      6.14

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11         4 - 14          0.60    31.27
  LCS_AVERAGE:      3.74

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  139
LCS_GDT     M       1     M       1      3    4   27     2    2    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     E       2     E       2      3    4   27     3    3    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     L       3     L       3      3   13   27     3    3    6    8    9   13   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     K       4     K       4     11   14   27     9   11   11   12   13   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     D       5     D       5     11   14   27     9   11   11   12   13   14   14   16   18   21   27   33   38   41   42   44   46   48   50   52 
LCS_GDT     I       6     I       6     11   14   27     9   11   11   12   13   14   14   16   18   24   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     M       7     M       7     11   14   27     9   11   11   12   13   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     H       8     H       8     11   14   27     9   11   11   12   13   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     I       9     I       9     11   14   27     9   11   11   12   13   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     L      10     L      10     11   14   27     9   11   11   12   13   14   14   16   20   23   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     E      11     E      11     11   14   27     9   11   11   12   13   14   14   16   18   20   21   29   38   41   42   44   46   48   50   56 
LCS_GDT     D      12     D      12     11   14   27     9   11   11   12   13   14   16   20   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     M      13     M      13     11   14   27     4   11   11   12   13   14   16   20   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     K      14     K      14     11   14   27     4   11   11   12   13   14   14   16   18   20   22   26   36   38   42   43   46   48   50   56 
LCS_GDT     V      15     V      15      6   14   27     3    5    6    9   13   14   14   16   18   20   22   26   28   32   36   43   46   48   50   56 
LCS_GDT     G      16     G      16      5   14   27     1    4    8   12   13   14   14   16   18   20   21   26   27   30   34   43   46   48   50   56 
LCS_GDT     V      17     V      17      5   14   27     3    4    6    8   10   14   14   16   18   20   22   24   26   29   34   37   41   45   49   56 
LCS_GDT     F      18     F      18      5    9   27     3    4    6    8    9   13   14   16   19   20   22   26   27   29   34   38   41   45   49   56 
LCS_GDT     A      19     A      19      5    9   27     3    4    6    8    9   12   14   15   18   20   22   26   27   30   33   38   41   45   50   56 
LCS_GDT     T      20     T      20      5    9   27     3    4    6    8    9   11   14   15   17   20   21   25   26   28   32   38   43   48   50   56 
LCS_GDT     L      21     L      21      4    9   27     3    3    6    8    9   11   14   15   18   20   21   25   26   28   32   36   41   45   48   54 
LCS_GDT     D      22     D      22      4    9   27     3    3    5    7    9   11   12   15   17   19   21   25   26   28   32   33   35   40   45   50 
LCS_GDT     E      23     E      23      4    9   27     3    3    4    7    9   11   11   12   12   14   16   19   23   27   29   32   34   41   45   49 
LCS_GDT     Y      24     Y      24      4    9   27     3    3    4    7    9   10   12   15   17   19   21   25   26   28   32   35   40   45   47   55 
LCS_GDT     G      25     G      25      3    5   27     3    3    3    4    6    8   14   16   18   21   25   26   28   32   36   43   45   48   50   55 
LCS_GDT     N      26     N      26      3    5   27     3    3    4    5    5    8   14   16   18   21   25   26   30   38   42   43   46   48   50   56 
LCS_GDT     P      27     P      27      3    5   27     3    3    5    7    9   10   14   16   18   20   25   26   36   41   42   44   46   48   50   56 
LCS_GDT     H      28     H      28      3    4   18     3    3    3    7    9   11   14   16   18   22   25   36   38   41   42   44   46   48   50   56 
LCS_GDT     A      29     A      29      3    4   18     3    5    5    6    8   10   12   19   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     R      30     R      30      3    4   18     2    6    7    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   55 
LCS_GDT     H      31     H      31      3    3   18     1    3    4    4    5    6   10   14   23   25   29   36   38   41   42   44   46   48   50   55 
LCS_GDT     A      32     A      32      3    3   18     3    4    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     H      33     H      33      3    3   18     3    3    3    5    7   10   13   19   20   24   29   36   38   41   42   44   46   47   50   56 
LCS_GDT     I      34     I      34      3    5   27     3    3    3    4    6    8   12   15   17   21   24   28   32   34   36   39   43   45   50   53 
LCS_GDT     T      35     T      35      3    5   27     3    3    3    5    5    8   12   15   19   21   24   28   34   36   40   41   45   47   50   56 
LCS_GDT     A      36     A      36      3    5   27     3    3    3    4    6    8   12   15   19   21   24   28   32   34   36   39   43   47   50   56 
LCS_GDT     A      37     A      37      4    5   27     4    4    4    5    5    7    8    9   14   20   22   25   28   32   34   38   42   47   50   56 
LCS_GDT     N      38     N      38      4    5   27     4    4    4    5    5    7    8   10   12   16   21   24   28   31   35   38   41   45   50   56 
LCS_GDT     E      39     E      39      4    5   27     4    4    4    5    5    7    8   11   15   17   20   26   28   31   35   38   41   45   50   56 
LCS_GDT     E      40     E      40      4    7   27     4    4    4    8   11   13   15   19   21   23   24   27   29   31   35   38   41   45   50   56 
LCS_GDT     G      41     G      41      5    9   27     3    5    6    7    8   14   15   18   21   23   24   27   31   34   35   38   43   47   50   56 
LCS_GDT     I      42     I      42      5    9   27     3    5    6    7    8   14   15   17   20   23   25   29   35   40   42   44   46   48   50   56 
LCS_GDT     F      43     F      43      5    9   27     3    5    6    7   12   14   15   19   21   24   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     F      44     F      44      5    9   27     3    5    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     M      45     M      45      5    9   27     3    5    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   54 
LCS_GDT     T      46     T      46      4    9   27     2    4    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   54 
LCS_GDT     S      47     S      47      4    9   27     0    4    6    8   12   14   16   20   23   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     P      48     P      48      4    9   27     3    4    5    7    8    9   13   19   20   23   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     E      49     E      49      3    9   27     3    4    6    8   11   12   14   19   20   25   29   36   38   41   42   44   46   48   50   52 
LCS_GDT     T      50     T      50      3    9   27     3    3    5    6    8   12   14   19   23   25   29   36   38   41   42   44   46   47   50   52 
LCS_GDT     H      51     H      51      7   10   27     6    7    7    9   14   15   16   20   23   25   29   36   38   41   42   44   46   48   50   54 
LCS_GDT     F      52     F      52      7   10   27     6    7    7    8   14   15   15   16   17   19   24   36   38   41   42   44   46   48   50   54 
LCS_GDT     Y      53     Y      53      7   10   27     6    7    7   11   14   15   15   20   23   25   29   36   38   41   42   44   46   48   50   54 
LCS_GDT     D      54     D      54      7   10   27     6    7    7   11   14   15   16   20   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     Q      55     Q      55      7   10   27     6    7    7   11   14   15   15   17   21   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     L      56     L      56      7   10   27     6    7    7   11   14   15   15   19   21   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     M      57     M      57      7   10   27     6    7    7   11   14   15   16   20   23   25   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     G      58     G      58      7   10   27     3    3    4    8    8   10   12   15   19   22   25   29   34   41   42   44   46   48   50   56 
LCS_GDT     D      59     D      59      4   10   27     3    5    7   11   14   15   15   16   20   22   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     Q      60     Q      60      4   10   27     3    3    4    7    9   10   13   16   20   24   29   36   38   41   42   44   46   48   50   56 
LCS_GDT     R      61     R      61      4    9   25     3    5    7   11   14   15   15   16   19   24   27   36   38   41   42   44   46   48   50   52 
LCS_GDT     V      62     V      62      4    9   25     3    5    7   11   14   15   15   16   18   21   25   30   35   37   40   44   46   48   50   56 
LCS_GDT     A      63     A      63      4    9   25     3    5    7   11   14   15   15   16   18   20   22   26   28   31   36   37   41   45   50   56 
LCS_GDT     M      64     M      64      4    9   25     3    4    7    8   14   15   15   16   17   19   22   26   28   31   35   38   41   45   50   56 
LCS_GDT     T      65     T      65      4    9   25     3    4    4    8   12   15   15   16   17   20   23   27   29   31   35   38   43   47   50   56 
LCS_GDT     A      66     A      66      4    9   26     3    4    6   11   14   15   15   16   18   20   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     I      67     I      67      4    9   26     4    4    6   11   14   15   15   16   18   20   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     S      68     S      68      4    6   26     4    4    4    5    6   10   13   16   18   20   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     E      69     E      69      4    6   26     4    4    4    5    6    7   11   15   17   19   21   26   28   32   35   38   43   47   50   56 
LCS_GDT     E      70     E      70      4    6   26     4    4    4    5    6   11   14   17   18   19   22   26   28   32   35   38   43   47   50   56 
LCS_GDT     G      71     G      71      3    7   26     3    4    5    7    7   11   14   17   18   19   20   22   26   30   34   38   43   47   50   56 
LCS_GDT     Y      72     Y      72      3    7   26     3    4    4    4    5    5    6    8   10   11   14   21   22   25   26   36   37   44   48   53 
LCS_GDT     L      73     L      73      4    7   26     3    4    5    7    7    9   11   17   18   19   20   21   22   25   26   29   30   38   48   53 
LCS_GDT     I      74     I      74      4    7   26     3    4    5    7    7    8   10   14   18   19   20   21   23   25   26   29   30   40   43   53 
LCS_GDT     Q      75     Q      75      4    7   26     3    4    5    7    8   10   14   17   18   19   20   21   23   30   33   38   43   47   50   56 
LCS_GDT     V      76     V      76      4    7   26     3    4    5    7    7   10   14   17   18   19   20   22   26   30   34   38   43   47   50   56 
LCS_GDT     V      77     V      77      6    7   26     3    5    7    7    8   11   14   17   18   19   20   21   23   26   32   36   41   45   50   56 
LCS_GDT     R      78     R      78      6    8   26     3    6    7    7    8   11   14   17   18   19   21   25   28   31   35   38   43   47   50   56 
LCS_GDT     V      79     V      79      6    8   26     3    6    7    7    8   11   14   17   18   19   22   25   29   31   35   38   43   47   50   56 
LCS_GDT     E      80     E      80      6    8   26     3    6    7    7    8   11   14   17   18   21   22   27   29   31   33   38   43   47   50   56 
LCS_GDT     G      81     G      81      6    8   26     3    6    7    7    8   11   14   17   18   19   20   24   27   31   33   38   43   47   50   56 
LCS_GDT     T      82     T      82      6    8   26     3    6    7    7    8   11   14   17   18   19   20   21   27   30   33   38   41   45   50   56 
LCS_GDT     A      83     A      83      4    8   26     3    3    5    5    7   11   14   17   18   19   20   21   23   26   32   36   40   41   45   50 
LCS_GDT     R      84     R      84      4    8   26     3    3    5    7    8   11   14   17   18   19   20   21   23   27   32   36   40   41   45   48 
LCS_GDT     P      85     P      85      4    8   26     3    3    5    5    8   10   13   16   18   19   20   21   23   26   32   36   40   41   45   48 
LCS_GDT     V      86     V      86      4    5   26     3    4    5    5    8   11   14   17   18   19   20   21   23   27   32   36   40   41   45   48 
LCS_GDT     E      87     E      87      4   10   26     3    4    4    5    9   11   14   17   18   19   20   21   23   26   32   36   40   41   45   48 
LCS_GDT     N      88     N      88      8   11   26     6    8    8    9    9   10   13   17   18   19   20   21   23   26   32   36   40   41   45   48 
LCS_GDT     D      89     D      89      8   11   26     5    8    8    9    9   11   12   12   17   20   22   26   27   30   33   36   40   41   45   48 
LCS_GDT     Y      90     Y      90      8   11   27     6    8    8    9    9   11   13   17   18   19   22   26   27   29   33   36   40   41   45   48 
LCS_GDT     L      91     L      91      8   11   27     6    8    8    9    9   11   12   12   17   18   20   21   23   26   32   36   40   41   45   48 
LCS_GDT     K      92     K      92      8   11   27     6    8    8    9    9   11   12   12   16   20   22   26   27   29   33   36   40   41   45   48 
LCS_GDT     T      93     T      93      8   11   27     6    8    8    9    9   12   13   16   19   20   22   26   27   30   33   36   40   41   45   48 
LCS_GDT     V      94     V      94      8   11   27     6    8    8    9    9   11   12   14   16   18   22   26   27   30   33   36   39   41   45   48 
LCS_GDT     F      95     F      95      8   11   27     4    8    8    9    9   11   12   15   19   20   22   26   27   30   33   36   39   41   45   47 
LCS_GDT     A      96     A      96      8   11   27     3    4    8    9    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   47 
LCS_GDT     D      97     D      97      4   11   27     3    4    5    8    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     N      98     N      98      5   11   27     3    4    7    9    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     P      99     P      99      5    9   27     3    4    6    8    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     Y     100     Y     100      5    9   27     3    4    6    8    9   10   11   13   18   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     Y     101     Y     101      5    9   27     4    4    6    8    9   10   11   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     Q     102     Q     102      5    9   27     4    4    6    8    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     H     103     H     103      4    9   27     4    4    4    7    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     I     104     I     104      4    9   27     4    4    4    7    9   12   13   16   19   20   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     Y     105     Y     105      3    6   27     3    3    3    4    6    6    9   11   11   14   15   20   27   30   32   36   39   41   45   46 
LCS_GDT     K     106     K     106      3    6   27     3    3    3    5    7    8   10   12   12   17   22   26   27   30   33   36   39   41   45   46 
LCS_GDT     T     112     T     112      3    5   27     3    3    3    4    5    9   13   16   19   20   22   26   32   36   39   43   45   48   50   52 
LCS_GDT     M     113     M     113      3    5   27     3    3    3    4    5    9   13   20   23   24   29   31   38   41   42   43   46   48   50   52 
LCS_GDT     Q     114     Q     114      4    6   27     3    4    4    4    6    9   12   14   18   23   24   36   38   41   42   44   46   48   50   52 
LCS_GDT     V     115     V     115      4    7   27     3    4    4    6    8   12   13   16   19   23   25   31   35   40   42   44   46   48   50   52 
LCS_GDT     F     116     F     116      4    7   27     3    4    4    6    9   12   13   16   19   21   25   30   35   37   42   44   46   48   50   52 
LCS_GDT     Q     117     Q     117      5    7   27     4    4    5    7    9   12   13   16   19   20   24   28   31   34   37   39   44   46   48   51 
LCS_GDT     I     118     I     118      5    7   27     4    5    5    7    9   11   13   15   19   20   22   26   29   30   33   38   41   45   50   56 
LCS_GDT     Y     119     Y     119      5    7   27     4    4    5    7    8   10   13   15   17   20   22   26   27   30   33   36   41   45   50   56 
LCS_GDT     A     120     A     120      5    7   27     4    4    5    7    7    8   11   15   21   23   24   27   29   32   34   38   43   47   50   56 
LCS_GDT     G     121     G     121      5    9   27     3    4    6    8   12   14   16   19   21   23   25   27   29   32   34   38   43   47   50   56 
LCS_GDT     H     122     H     122      5    9   26     4    4    6    8   12   14   16   19   21   23   25   27   29   32   34   38   43   47   50   56 
LCS_GDT     G     123     G     123      5    9   26     4    4    6    9   12   14   16   19   21   23   25   27   29   32   34   38   43   47   50   56 
LCS_GDT     F     124     F     124      5    9   21     4    4    6    7   11   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     Y     125     Y     125      5    9   21     4    4    6    9   11   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     H     126     H     126      5    9   21     3    4    6    8   12   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     S     127     S     127      5    9   21     3    4    6    9   10   11   16   19   21   23   25   26   29   31   35   38   41   45   50   56 
LCS_GDT     L     128     L     128      5    9   21     3    4    6    8   12   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     T     129     T     129      5    9   21     3    4    6    8   12   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     Q     130     Q     130      6    9   21     4    6    6    9   12   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     G     131     G     131      6    9   21     4    6    6    9   11   14   16   19   21   23   24   27   29   32   35   38   43   47   50   56 
LCS_GDT     H     132     H     132      6    9   21     4    6    6    9   12   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     K     133     K     133      6    9   21     4    6    6    9   12   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     Y     134     Y     134      6    9   21     3    6    6    9   11   14   16   18   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     I     135     I     135      6    9   21     3    6    6    9   11   14   16   19   21   23   25   27   29   32   35   38   43   47   50   56 
LCS_GDT     F     136     F     136      5    9   21     3    4    6    8   12   14   16   19   21   23   25   27   29   32   34   38   43   47   50   56 
LCS_GDT     S     137     S     137      5    7   21     3    4    5    8   12   14   15   19   21   23   25   27   29   32   34   38   43   47   50   56 
LCS_GDT     I     138     I     138      5    7   21     3    3    5    8    9   10   11   12   19   20   25   26   28   32   34   38   43   47   50   56 
LCS_GDT     G     139     G     139      4    6   21     2    3    5    7    8   11   11   12   13   14   14   18   24   28   31   37   41   45   46   52 
LCS_GDT     E     145     E     145      3    5    8     3    3    4    5    6    6    9    9   11   13   14   16   17   17   27   29   31   33   39   45 
LCS_GDT     V     146     V     146      3    5    8     3    3    4    5    6    6    7    9   10   12   13   16   17   17   20   22   29   37   39   41 
LCS_GDT     R     147     R     147      3    5    8     3    3    4    5    6    7    9   10   11   13   14   16   19   22   27   30   32   40   42   45 
LCS_GDT     A     148     A     148      3    5    8     3    3    4    5    6    7    9   10   11   13   14   17   19   22   27   30   35   40   43   46 
LCS_GDT     L     149     L     149      3    5    8     0    3    4    5    7    8    9   10   11   13   14   21   23   24   27   31   35   40   43   46 
LCS_AVERAGE  LCS_A:   9.28  (   3.74    6.14   17.97 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     11     11     12     14     15     16     20     23     25     29     36     38     41     42     44     46     48     50     56 
GDT PERCENT_CA   6.47   7.91   7.91   8.63  10.07  10.79  11.51  14.39  16.55  17.99  20.86  25.90  27.34  29.50  30.22  31.65  33.09  34.53  35.97  40.29
GDT RMS_LOCAL    0.18   0.60   0.60   0.97   1.77   1.89   2.18   2.77   3.03   3.37   3.82   4.43   4.50   4.76   4.86   5.13   5.29   5.89   6.13   7.03
GDT RMS_ALL_CA  32.08  31.27  31.27  29.55  22.73  22.96  23.62  23.34  23.25  23.17  22.84  22.58  22.72  22.69  22.56  22.33  22.35  22.30  22.30  20.15

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.125
LGA    E       2      E       2          1.738
LGA    L       3      L       3          3.007
LGA    K       4      K       4          1.657
LGA    D       5      D       5          5.220
LGA    I       6      I       6          5.943
LGA    M       7      M       7          3.859
LGA    H       8      H       8          2.184
LGA    I       9      I       9          2.374
LGA    L      10      L      10          5.790
LGA    E      11      E      11          6.662
LGA    D      12      D      12          3.705
LGA    M      13      M      13          3.799
LGA    K      14      K      14          8.030
LGA    V      15      V      15         11.012
LGA    G      16      G      16         12.861
LGA    V      17      V      17         15.866
LGA    F      18      F      18         15.200
LGA    A      19      A      19         16.112
LGA    T      20      T      20         14.520
LGA    L      21      L      21         18.168
LGA    D      22      D      22         16.881
LGA    E      23      E      23         19.591
LGA    Y      24      Y      24         17.245
LGA    G      25      G      25         14.399
LGA    N      26      N      26         10.497
LGA    P      27      P      27          8.445
LGA    H      28      H      28          6.641
LGA    A      29      A      29          4.139
LGA    R      30      R      30          0.537
LGA    H      31      H      31          4.546
LGA    A      32      A      32          1.598
LGA    H      33      H      33          7.234
LGA    I      34      I      34         12.276
LGA    T      35      T      35         11.656
LGA    A      36      A      36         13.869
LGA    A      37      A      37         19.355
LGA    N      38      N      38         22.239
LGA    E      39      E      39         22.234
LGA    E      40      E      40         20.116
LGA    G      41      G      41         17.327
LGA    I      42      I      42         10.233
LGA    F      43      F      43          7.436
LGA    F      44      F      44          2.415
LGA    M      45      M      45          2.480
LGA    T      46      T      46          3.181
LGA    S      47      S      47          2.405
LGA    P      48      P      48          6.733
LGA    E      49      E      49          6.055
LGA    T      50      T      50          4.671
LGA    H      51      H      51          2.560
LGA    F      52      F      52          6.473
LGA    Y      53      Y      53          3.972
LGA    D      54      D      54          1.816
LGA    Q      55      Q      55          5.994
LGA    L      56      L      56          5.529
LGA    M      57      M      57          2.136
LGA    G      58      G      58          7.324
LGA    D      59      D      59          6.329
LGA    Q      60      Q      60          7.748
LGA    R      61      R      61          9.494
LGA    V      62      V      62         11.427
LGA    A      63      A      63         15.665
LGA    M      64      M      64         17.645
LGA    T      65      T      65         21.779
LGA    A      66      A      66         21.041
LGA    I      67      I      67         25.462
LGA    S      68      S      68         21.955
LGA    E      69      E      69         24.316
LGA    E      70      E      70         18.024
LGA    G      71      G      71         21.824
LGA    Y      72      Y      72         24.854
LGA    L      73      L      73         21.219
LGA    I      74      I      74         20.454
LGA    Q      75      Q      75         21.750
LGA    V      76      V      76         22.272
LGA    V      77      V      77         21.377
LGA    R      78      R      78         22.859
LGA    V      79      V      79         23.734
LGA    E      80      E      80         25.814
LGA    G      81      G      81         27.988
LGA    T      82      T      82         28.757
LGA    A      83      A      83         29.381
LGA    R      84      R      84         29.806
LGA    P      85      P      85         28.177
LGA    V      86      V      86         32.242
LGA    E      87      E      87         32.272
LGA    N      88      N      88         31.532
LGA    D      89      D      89         31.275
LGA    Y      90      Y      90         33.701
LGA    L      91      L      91         33.600
LGA    K      92      K      92         32.022
LGA    T      93      T      93         33.455
LGA    V      94      V      94         36.155
LGA    F      95      F      95         34.481
LGA    A      96      A      96         32.184
LGA    D      97      D      97         33.704
LGA    N      98      N      98         35.600
LGA    P      99      P      99         32.885
LGA    Y     100      Y     100         28.594
LGA    Y     101      Y     101         24.364
LGA    Q     102      Q     102         25.572
LGA    H     103      H     103         22.360
LGA    I     104      I     104         17.163
LGA    Y     105      Y     105         16.573
LGA    K     106      K     106         15.803
LGA    T     112      T     112          6.323
LGA    M     113      M     113          3.943
LGA    Q     114      Q     114          8.331
LGA    V     115      V     115         10.412
LGA    F     116      F     116         12.398
LGA    Q     117      Q     117         15.960
LGA    I     118      I     118         18.780
LGA    Y     119      Y     119         23.549
LGA    A     120      A     120         27.460
LGA    G     121      G     121         29.895
LGA    H     122      H     122         33.555
LGA    G     123      G     123         29.978
LGA    F     124      F     124         31.911
LGA    Y     125      Y     125         32.011
LGA    H     126      H     126         36.490
LGA    S     127      S     127         39.879
LGA    L     128      L     128         41.706
LGA    T     129      T     129         45.156
LGA    Q     130      Q     130         47.159
LGA    G     131      G     131         47.195
LGA    H     132      H     132         42.356
LGA    K     133      K     133         41.027
LGA    Y     134      Y     134         36.417
LGA    I     135      I     135         35.323
LGA    F     136      F     136         34.210
LGA    S     137      S     137         35.503
LGA    I     138      I     138         36.397
LGA    G     139      G     139         41.141
LGA    E     145      E     145         44.281
LGA    V     146      V     146         41.785
LGA    R     147      R     147         39.087
LGA    A     148      A     148         34.036
LGA    L     149      L     149         31.640

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  139    4.0     20    2.77    15.647    13.143     0.697

LGA_LOCAL      RMSD =  2.771  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.335  Number of atoms =  139 
Std_ALL_ATOMS  RMSD = 16.440  (standard rmsd on all 139 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.662655 * X  +   0.392385 * Y  +  -0.637905 * Z  +  14.022637
  Y_new =  -0.505595 * X  +   0.862754 * Y  +   0.005481 * Z  +  33.970867
  Z_new =   0.552506 * X  +   0.318889 * Y  +   0.770096 * Z  +  38.902172 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.392594   -2.748999  [ DEG:    22.4940   -157.5060 ]
  Theta =  -0.585368   -2.556225  [ DEG:   -33.5391   -146.4609 ]
  Phi   =  -0.651759    2.489834  [ DEG:   -37.3430    142.6570 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0331TS168_2                                  
REMARK     2: T0331.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0331TS168_2.T0331.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  139   4.0   20   2.77  13.143    16.44
REMARK  ---------------------------------------------------------- 
MOLECULE T0331TS168_2
PFRMAT TS
TARGET T0331
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      15.507  33.295   8.373  1.00 25.00           C
ATOM      2  CA  GLU     2      14.294  36.176  10.529  1.00 25.00           C
ATOM      3  CA  LEU     3      12.851  33.705  13.036  1.00 25.00           C
ATOM      4  CA  LYS     4      12.546  36.346  15.675  1.00 25.00           C
ATOM      5  CA  ASP     5      15.023  34.129  17.576  1.00 25.00           C
ATOM      6  CA  ILE     6      13.381  35.100  20.897  1.00 25.00           C
ATOM      7  CA  MET     7       9.929  34.264  19.464  1.00 25.00           C
ATOM      8  CA  HIS     8      11.224  30.866  18.263  1.00 25.00           C
ATOM      9  CA  ILE     9      12.680  30.167  21.735  1.00 25.00           C
ATOM     10  CA  LEU    10       9.334  31.091  23.352  1.00 25.00           C
ATOM     11  CA  GLU    11       7.495  28.754  20.940  1.00 25.00           C
ATOM     12  CA  ASP    12       9.935  25.924  21.783  1.00 25.00           C
ATOM     13  CA  MET    13      10.363  26.349  25.520  1.00 25.00           C
ATOM     14  CA  LYS    14       6.538  26.137  25.588  1.00 25.00           C
ATOM     15  CA  VAL    15       6.346  29.215  27.844  1.00 25.00           C
ATOM     16  CA  GLY    16       7.870  28.316  31.276  1.00 25.00           C
ATOM     17  CA  VAL    17       8.519  32.043  31.752  1.00 25.00           C
ATOM     18  CA  PHE    18      10.867  30.749  34.455  1.00 25.00           C
ATOM     19  CA  ALA    19      13.819  32.990  35.210  1.00 25.00           C
ATOM     20  CA  THR    20      17.227  33.528  36.846  1.00 25.00           C
ATOM     21  CA  LEU    21      17.760  34.467  40.478  1.00 25.00           C
ATOM     22  CA  ASP    22      20.704  32.138  41.189  1.00 25.00           C
ATOM     23  CA  GLU    23      23.532  29.994  42.687  1.00 25.00           C
ATOM     24  CA  TYR    24      26.925  31.753  42.323  1.00 25.00           C
ATOM     25  CA  GLY    25      29.224  30.882  39.409  1.00 25.00           C
ATOM     26  CA  ASN    26      29.036  34.668  38.775  1.00 25.00           C
ATOM     27  CA  PRO    27      28.595  37.326  36.090  1.00 25.00           C
ATOM     28  CA  HIS    28      26.065  34.865  34.652  1.00 25.00           C
ATOM     29  CA  ALA    29      25.492  31.917  32.274  1.00 25.00           C
ATOM     30  CA  ARG    30      26.348  29.456  35.081  1.00 25.00           C
ATOM     31  CA  HIS    31      23.898  31.237  37.424  1.00 25.00           C
ATOM     32  CA  ALA    32      21.168  31.060  34.744  1.00 25.00           C
ATOM     33  CA  HIS    33      21.840  27.319  34.272  1.00 25.00           C
ATOM     34  CA  ILE    34      21.611  26.776  38.056  1.00 25.00           C
ATOM     35  CA  THR    35      18.292  28.684  38.155  1.00 25.00           C
ATOM     36  CA  ALA    36      16.948  26.544  35.277  1.00 25.00           C
ATOM     37  CA  ALA    37      18.008  23.358  37.119  1.00 25.00           C
ATOM     38  CA  ASN    38      19.517  22.123  33.885  1.00 25.00           C
ATOM     39  CA  GLU    39      20.329  23.978  30.714  1.00 25.00           C
ATOM     40  CA  GLU    40      17.036  25.771  30.165  1.00 25.00           C
ATOM     41  CA  GLY    41      13.510  26.417  31.339  1.00 25.00           C
ATOM     42  CA  ILE    42      14.050  30.063  30.250  1.00 25.00           C
ATOM     43  CA  PHE    43      16.964  32.304  31.354  1.00 25.00           C
ATOM     44  CA  PHE    44      18.430  35.681  32.312  1.00 25.00           C
ATOM     45  CA  MET    45      19.509  37.908  35.238  1.00 25.00           C
ATOM     46  CA  THR    46      21.670  36.083  37.790  1.00 25.00           C
ATOM     47  CA  SER    47      21.150  37.972  41.017  1.00 25.00           C
ATOM     48  CA  PRO    48      24.096  36.333  42.884  1.00 25.00           C
ATOM     49  CA  GLU    49      26.679  35.782  45.614  1.00 25.00           C
ATOM     50  CA  THR    50      29.665  36.550  43.380  1.00 25.00           C
ATOM     51  CA  HIS    51      27.741  39.758  42.450  1.00 25.00           C
ATOM     52  CA  PHE    52      24.449  41.688  42.126  1.00 25.00           C
ATOM     53  CA  TYR    53      26.214  44.405  40.085  1.00 25.00           C
ATOM     54  CA  ASP    54      27.734  41.734  37.798  1.00 25.00           C
ATOM     55  CA  GLN    55      24.282  40.148  37.316  1.00 25.00           C
ATOM     56  CA  LEU    56      22.802  43.572  36.451  1.00 25.00           C
ATOM     57  CA  MET    57      25.600  45.336  34.557  1.00 25.00           C
ATOM     58  CA  GLY    58      25.432  44.691  30.831  1.00 25.00           C
ATOM     59  CA  ASP    59      26.166  41.020  31.420  1.00 25.00           C
ATOM     60  CA  GLN    60      22.505  40.684  32.342  1.00 25.00           C
ATOM     61  CA  ARG    61      21.112  42.553  29.365  1.00 25.00           C
ATOM     62  CA  VAL    62      17.774  41.123  30.526  1.00 25.00           C
ATOM     63  CA  ALA    63      14.147  40.156  30.107  1.00 25.00           C
ATOM     64  CA  MET    64      12.230  43.013  31.837  1.00 25.00           C
ATOM     65  CA  THR    65      10.025  42.052  34.767  1.00 25.00           C
ATOM     66  CA  ALA    66       7.172  39.537  35.306  1.00 25.00           C
ATOM     67  CA  ILE    67       3.517  39.111  36.420  1.00 25.00           C
ATOM     68  CA  SER    68       3.267  37.000  33.304  1.00 25.00           C
ATOM     69  CA  GLU    69       0.538  36.021  30.799  1.00 25.00           C
ATOM     70  CA  GLU    70       2.635  34.133  28.298  1.00 25.00           C
ATOM     71  CA  GLY    71       4.304  37.490  27.766  1.00 25.00           C
ATOM     72  CA  TYR    72       7.208  37.056  30.211  1.00 25.00           C
ATOM     73  CA  LEU    73      10.261  36.355  27.997  1.00 25.00           C
ATOM     74  CA  ILE    74      12.484  34.964  30.788  1.00 25.00           C
ATOM     75  CA  GLN    75      11.740  37.394  33.623  1.00 25.00           C
ATOM     76  CA  VAL    76      14.377  38.074  36.302  1.00 25.00           C
ATOM     77  CA  VAL    77      15.582  41.690  35.686  1.00 25.00           C
ATOM     78  CA  ARG    78      17.121  41.222  39.151  1.00 25.00           C
ATOM     79  CA  VAL    79      17.073  39.648  42.635  1.00 25.00           C
ATOM     80  CA  GLU    80      18.613  37.768  45.561  1.00 25.00           C
ATOM     81  CA  GLY    81      17.522  35.213  48.159  1.00 25.00           C
ATOM     82  CA  THR    82      18.481  32.338  50.406  1.00 25.00           C
ATOM     83  CA  ALA    83      17.532  31.061  53.813  1.00 25.00           C
ATOM     84  CA  ARG    84      13.708  30.667  53.579  1.00 25.00           C
ATOM     85  CA  PRO    85      10.016  30.127  53.099  1.00 25.00           C
ATOM     86  CA  VAL    86       9.687  27.239  55.546  1.00 25.00           C
ATOM     87  CA  GLU    87       8.989  29.484  58.555  1.00 25.00           C
ATOM     88  CA  ASN    88       5.785  31.386  58.842  1.00 25.00           C
ATOM     89  CA  ASP    89       5.936  34.106  56.151  1.00 25.00           C
ATOM     90  CA  TYR    90       6.971  36.688  58.783  1.00 25.00           C
ATOM     91  CA  LEU    91       9.710  34.330  60.052  1.00 25.00           C
ATOM     92  CA  LYS    92      10.972  33.826  56.472  1.00 25.00           C
ATOM     93  CA  THR    93      11.044  37.618  55.939  1.00 25.00           C
ATOM     94  CA  VAL    94      13.006  38.065  59.198  1.00 25.00           C
ATOM     95  CA  PHE    95      15.501  35.377  58.092  1.00 25.00           C
ATOM     96  CA  ALA    96      15.921  37.124  54.710  1.00 25.00           C
ATOM     97  CA  ASP    97      18.618  39.684  55.383  1.00 25.00           C
ATOM     98  CA  ASN    98      21.148  36.876  55.467  1.00 25.00           C
ATOM     99  CA  PRO    99      22.912  38.749  52.623  1.00 25.00           C
ATOM    100  CA  TYR   100      22.412  39.356  48.913  1.00 25.00           C
ATOM    101  CA  TYR   101      18.911  40.642  49.779  1.00 25.00           C
ATOM    102  CA  GLN   102      20.438  43.467  51.866  1.00 25.00           C
ATOM    103  CA  HIS   103      22.751  44.398  48.959  1.00 25.00           C
ATOM    104  CA  ILE   104      19.762  44.448  46.566  1.00 25.00           C
ATOM    105  CA  TYR   105      22.032  46.095  43.996  1.00 25.00           C
ATOM    106  CA  LYS   106      23.042  48.910  46.257  1.00 25.00           C
ATOM    107  CA  ASP   107      24.509  52.254  45.379  1.00 25.00           C
ATOM    108  CA  GLU   108      22.572  53.683  48.323  1.00 25.00           C
ATOM    109  CA  SER   109      19.100  52.994  46.939  1.00 25.00           C
ATOM    110  CA  SER   110      17.097  55.267  44.621  1.00 25.00           C
ATOM    111  CA  ASP   111      16.419  52.281  42.460  1.00 25.00           C
ATOM    112  CA  THR   112      15.932  48.524  42.267  1.00 25.00           C
ATOM    113  CA  MET   113      15.952  44.720  42.804  1.00 25.00           C
ATOM    114  CA  GLN   114      14.698  42.762  45.869  1.00 25.00           C
ATOM    115  CA  VAL   115      12.273  40.817  43.680  1.00 25.00           C
ATOM    116  CA  PHE   116      12.097  38.231  40.901  1.00 25.00           C
ATOM    117  CA  GLN   117      10.023  35.565  39.214  1.00 25.00           C
ATOM    118  CA  ILE   118      12.916  33.290  40.140  1.00 25.00           C
ATOM    119  CA  TYR   119      11.375  29.891  39.408  1.00 25.00           C
ATOM    120  CA  ALA   120      13.823  27.117  40.232  1.00 25.00           C
ATOM    121  CA  GLY   121      15.690  25.163  42.895  1.00 25.00           C
ATOM    122  CA  HIS   122      13.140  26.194  45.585  1.00 25.00           C
ATOM    123  CA  GLY   123      13.248  29.814  44.427  1.00 25.00           C
ATOM    124  CA  PHE   124      13.339  33.503  45.400  1.00 25.00           C
ATOM    125  CA  TYR   125      10.235  35.598  44.864  1.00 25.00           C
ATOM    126  CA  HIS   126       7.521  38.095  45.902  1.00 25.00           C
ATOM    127  CA  SER   127       4.271  38.775  47.757  1.00 25.00           C
ATOM    128  CA  LEU   128       3.106  41.311  45.187  1.00 25.00           C
ATOM    129  CA  THR   129      -0.388  42.648  45.176  1.00 25.00           C
ATOM    130  CA  GLN   130      -2.376  40.127  47.192  1.00 25.00           C
ATOM    131  CA  GLY   131      -2.476  36.371  46.925  1.00 25.00           C
ATOM    132  CA  HIS   132       0.691  36.802  44.751  1.00 25.00           C
ATOM    133  CA  LYS   133       3.189  34.238  45.943  1.00 25.00           C
ATOM    134  CA  TYR   134       5.771  33.924  43.245  1.00 25.00           C
ATOM    135  CA  ILE   135       8.020  30.801  43.258  1.00 25.00           C
ATOM    136  CA  PHE   136       7.582  27.074  42.549  1.00 25.00           C
ATOM    137  CA  SER   137       8.198  23.286  42.780  1.00 25.00           C
ATOM    138  CA  ILE   138       4.947  21.584  43.600  1.00 25.00           C
ATOM    139  CA  GLY   139       2.543  18.718  43.961  1.00 25.00           C
ATOM    140  CA  GLN   140      -0.325  16.793  42.275  1.00 25.00           C
ATOM    141  CA  GLY   141      -0.886  13.057  42.790  1.00 25.00           C
ATOM    142  CA  GLU   142      -4.631  12.540  42.367  1.00 25.00           C
ATOM    143  CA  HIS   143      -5.151  13.295  38.691  1.00 25.00           C
ATOM    144  CA  SER   144      -4.248  12.189  35.160  1.00 25.00           C
ATOM    145  CA  GLU   145      -1.131  10.099  35.408  1.00 25.00           C
ATOM    146  CA  VAL   146       0.531   7.286  33.573  1.00 25.00           C
ATOM    147  CA  ARG   147       2.533   8.605  30.629  1.00 25.00           C
ATOM    148  CA  ALA   148       2.485   9.948  27.024  1.00 25.00           C
ATOM    149  CA  LEU   149       3.817  12.133  24.216  1.00 25.00           C
TER
END
