
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  139 , name T0331TS168_5
# Molecule2: number of CA atoms  139 ( 1101),  selected  139 , name T0331.pdb
# PARAMETERS: T0331TS168_5.T0331.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        31 - 58          4.93    22.58
  LONGEST_CONTINUOUS_SEGMENT:    28        34 - 61          4.99    21.94
  LONGEST_CONTINUOUS_SEGMENT:    28        66 - 93          4.95    20.96
  LONGEST_CONTINUOUS_SEGMENT:    28        67 - 94          4.88    20.96
  LCS_AVERAGE:     17.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14         4 - 17          1.89    26.76
  LCS_AVERAGE:      6.11

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11         4 - 14          0.77    29.05
  LCS_AVERAGE:      3.61

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  139
LCS_GDT     M       1     M       1      3    5   22     0    3    7    7   12   13   15   17   19   23   28   30   32   33   36   38   43   45   48   51 
LCS_GDT     E       2     E       2      3    5   22     3    3    3    5   12   13   15   17   19   22   28   30   31   33   35   38   42   45   48   51 
LCS_GDT     L       3     L       3      3   13   22     3    3    3    8   12   13   15   17   19   23   28   30   32   33   36   38   43   45   48   51 
LCS_GDT     K       4     K       4     11   14   22     9    9   11   11   12   13   15   17   19   22   28   30   31   33   35   38   42   45   48   51 
LCS_GDT     D       5     D       5     11   14   22     9    9   11   11   12   13   14   15   17   20   24   26   31   33   35   38   42   45   48   51 
LCS_GDT     I       6     I       6     11   14   22     9    9   11   11   12   13   14   15   17   18   28   30   32   33   36   38   43   45   48   51 
LCS_GDT     M       7     M       7     11   14   22     9    9   11   11   12   13   15   17   19   23   28   30   32   33   36   39   43   45   48   51 
LCS_GDT     H       8     H       8     11   14   22     9    9   11   11   12   13   15   17   19   23   28   30   32   33   36   38   43   45   48   51 
LCS_GDT     I       9     I       9     11   14   22     9    9   11   11   12   13   15   17   19   23   28   30   32   33   36   39   43   45   48   51 
LCS_GDT     L      10     L      10     11   14   22     9    9   11   11   12   13   16   19   20   23   28   30   32   33   36   39   43   45   50   57 
LCS_GDT     E      11     E      11     11   14   22     9    9   11   11   12   13   14   15   17   20   24   30   32   33   36   39   43   45   50   57 
LCS_GDT     D      12     D      12     11   14   22     9    9   11   11   12   13   14   15   17   23   28   30   32   33   36   39   44   47   52   57 
LCS_GDT     M      13     M      13     11   14   22     3    3   11   11   12   13   14   15   17   20   23   27   32   34   38   42   46   48   52   57 
LCS_GDT     K      14     K      14     11   14   22     3    3   11   11   12   14   17   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     V      15     V      15      5   14   22     3    4    7   10   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     G      16     G      16      5   14   22     3    4    6    7   12   14   18   22   24   27   28   32   33   34   38   42   46   48   52   55 
LCS_GDT     V      17     V      17      5   14   22     3    4    6    7    9   12   14   15   23   26   28   31   33   34   38   42   45   48   52   55 
LCS_GDT     F      18     F      18      5   10   22     3    4    6    8   12   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     A      19     A      19      5   10   22     3    4    6    7    8   11   17   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     T      20     T      20      5   10   22     3    4    6    7    9   10   11   15   21   26   29   32   33   34   38   42   46   48   52   57 
LCS_GDT     L      21     L      21      4   10   22     3    3    4    6    9   10   11   12   17   20   24   25   28   34   38   42   46   48   52   57 
LCS_GDT     D      22     D      22      4   10   22     3    3    5    7    9   10   11   12   20   20   24   25   29   34   38   42   46   48   52   57 
LCS_GDT     E      23     E      23      3   10   20     3    3    5    7    9   10   11   15   20   20   24   27   29   34   38   42   46   48   52   57 
LCS_GDT     Y      24     Y      24      3    5   20     3    3    4    4    6    7    9   12   14   20   24   25   27   32   36   37   42   45   48   52 
LCS_GDT     G      25     G      25      3    5   20     3    4    6    6    7   10   12   15   24   27   28   32   33   34   36   37   38   43   47   51 
LCS_GDT     N      26     N      26      3    5   20     3    4    6    6    9   14   17   22   24   27   28   32   33   34   36   39   43   45   51   54 
LCS_GDT     P      27     P      27      3    5   20     3    4    6    9    9   11   13   16   19   23   28   30   32   34   36   39   44   47   52   55 
LCS_GDT     H      28     H      28      3    5   20     3    3    3    9    9   10   13   16   19   23   28   30   32   33   36   39   43   47   52   55 
LCS_GDT     A      29     A      29      3    3   20     0    4    4    9    9   10   14   16   21   23   29   31   33   34   36   39   44   47   52   55 
LCS_GDT     R      30     R      30      3    3   18     1    4    4    7   12   13   15   20   23   26   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     H      31     H      31      3    3   28     1    4    6    9   12   13   15   17   22   25   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     A      32     A      32      3    3   28     3    5    6    9   12   13   16   20   23   26   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     H      33     H      33      3    3   28     3    5    7    9   12   13   16   20   23   25   29   31   33   34   36   39   42   45   52   55 
LCS_GDT     I      34     I      34      3    4   28     3    3    4    5    7   11   14   19   22   25   28   31   33   34   36   39   42   44   48   52 
LCS_GDT     T      35     T      35      3    4   28     3    3    3    6    7   11   14   19   22   25   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     A      36     A      36      3    7   28     3    3    4    6    9   11   14   19   22   25   28   31   33   34   36   39   46   48   52   57 
LCS_GDT     A      37     A      37      5    7   28     4    4    5    6    9   10   12   14   18   20   25   28   31   33   38   42   46   48   52   57 
LCS_GDT     N      38     N      38      5    7   28     4    4    5    6    7    8   11   13   18   19   19   23   25   29   36   39   43   47   50   57 
LCS_GDT     E      39     E      39      5    7   28     4    4    5    6    7    8    9   11   15   16   18   23   25   26   30   35   39   42   44   49 
LCS_GDT     E      40     E      40      5    7   28     4    4    6    6    9   12   15   17   19   19   22   23   25   28   31   37   41   44   50   57 
LCS_GDT     G      41     G      41      5    7   28     3    4    6    8    9   12   15   17   19   20   25   28   30   33   37   42   46   48   52   57 
LCS_GDT     I      42     I      42      5    8   28     3    4    6    7   11   13   15   19   22   25   29   32   33   34   38   42   46   48   52   57 
LCS_GDT     F      43     F      43      5    8   28     3    4    6    6   11   12   15   19   22   25   29   31   33   34   38   42   46   48   52   57 
LCS_GDT     F      44     F      44      5    8   28     3    4    7    9   12   13   16   20   23   26   29   31   33   34   36   39   43   47   52   57 
LCS_GDT     M      45     M      45      5    8   28     3    4    6    9   12   13   16   20   23   26   28   31   33   34   36   39   43   45   48   52 
LCS_GDT     T      46     T      46      5    8   28     3    4    5    9   12   13   16   20   23   26   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     S      47     S      47      5    8   28     3    4    5    6    8   12   16   20   23   26   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     P      48     P      48      5    8   28     3    4    5    6    8   12   14   20   23   26   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     E      49     E      49      5    8   28     3    4    5    6    8   12   16   20   23   26   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     T      50     T      50      4    8   28     3    5    7    9   12   13   16   20   23   26   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     H      51     H      51      6    8   28     6    6    7    9   12   14   15   19   22   25   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     F      52     F      52      6    8   28     6    6    7    9   12   14   16   20   23   26   29   31   33   34   36   39   43   45   49   57 
LCS_GDT     Y      53     Y      53      6    7   28     6    6    7    9   12   14   16   20   23   26   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     D      54     D      54      6    7   28     6    6    7    9   12   14   16   20   23   26   29   31   33   34   36   39   43   45   49   52 
LCS_GDT     Q      55     Q      55      6    7   28     6    6    7    9   12   14   16   20   23   26   29   31   33   34   37   39   46   48   52   57 
LCS_GDT     L      56     L      56      6    7   28     6    6    7    9   12   14   16   20   23   26   29   31   33   34   36   39   44   47   52   57 
LCS_GDT     M      57     M      57      3    7   28     3    4    6    6    8    9   12   16   20   22   28   30   31   33   36   39   43   47   49   51 
LCS_GDT     G      58     G      58      3    4   28     3    3    5    7   11   13   15   18   23   26   29   31   33   34   36   39   43   47   49   51 
LCS_GDT     D      59     D      59      4    5   28     3    5    7    9   12   13   16   20   23   26   29   31   33   34   36   39   43   47   49   52 
LCS_GDT     Q      60     Q      60      4    5   28     3    4    7    9   12   13   16   20   23   26   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     R      61     R      61      4    7   28     3    4    5    9   12   14   16   20   23   26   29   31   33   34   36   39   43   45   48   52 
LCS_GDT     V      62     V      62      4    7   27     4    5    7    9   12   14   16   20   23   26   29   31   33   34   36   39   43   47   49   53 
LCS_GDT     A      63     A      63      4    7   27     4    5    6    9   10   14   14   20   23   26   28   31   33   34   37   42   46   48   52   57 
LCS_GDT     M      64     M      64      4    7   27     4    4    5    9   10   14   14   15   20   22   24   28   31   33   38   42   46   48   52   57 
LCS_GDT     T      65     T      65      4    7   27     4    4    4    9   10   14   15   16   23   25   26   32   33   34   38   42   46   48   52   57 
LCS_GDT     A      66     A      66      4    7   28     1    4    5    9   10   14   15   16   23   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     I      67     I      67      4    7   28     3    4    5    9   10   14   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     S      68     S      68      4    5   28     3    4    4    5    7   10   16   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     E      69     E      69      4    5   28     3    4    4    5    7    8   11   13   17   20   24   26   29   34   38   42   46   48   52   57 
LCS_GDT     E      70     E      70      4    5   28     3    4    4    5    7   10   14   16   19   25   26   32   33   34   38   42   46   48   52   57 
LCS_GDT     G      71     G      71      4    5   28     3    4    5    6    8   10   14   16   18   21   24   24   25   28   33   38   44   47   52   57 
LCS_GDT     Y      72     Y      72      4    5   28     3    4    4    5    5    6    8    9    9   16   23   23   25   26   30   35   38   41   45   51 
LCS_GDT     L      73     L      73      3    6   28     3    4    5    6    7    7   10   14   18   21   24   24   25   26   28   30   35   41   45   51 
LCS_GDT     I      74     I      74      3    6   28     3    4    5    6    7    7   10   14   18   21   24   24   25   28   31   35   38   45   47   51 
LCS_GDT     Q      75     Q      75      3    6   28     3    3    4    4    7    7   10   12   18   21   24   24   25   28   31   35   39   45   47   54 
LCS_GDT     V      76     V      76      3    6   28     3    4    5    6    7    9   14   16   18   21   24   24   25   28   33   37   44   47   52   57 
LCS_GDT     V      77     V      77      5    6   28     3    4    6    7    8   11   13   16   17   21   24   24   25   26   29   32   35   40   46   51 
LCS_GDT     R      78     R      78      5    6   28     3    4    6    7    8   11   14   16   18   21   24   24   25   26   29   39   44   47   52   57 
LCS_GDT     V      79     V      79      5    6   28     3    4    6    7    8   11   15   16   18   21   24   24   26   30   35   42   46   48   52   57 
LCS_GDT     E      80     E      80      5    6   28     3    4    6    7    9   12   15   16   18   21   24   29   30   34   38   42   46   48   52   57 
LCS_GDT     G      81     G      81      5    6   28     3    4    6    7    7    9   14   16   18   21   24   24   29   33   38   42   46   48   52   57 
LCS_GDT     T      82     T      82      3    6   28     3    3    6    7    8   11   14   16   18   21   24   24   25   27   33   39   43   47   52   57 
LCS_GDT     A      83     A      83      3    6   28     3    3    4    6    8   11   14   16   18   21   24   24   25   26   29   32   40   42   45   50 
LCS_GDT     R      84     R      84      4    6   28     3    4    5    7    8   11   14   16   18   21   24   24   25   26   29   32   35   41   46   51 
LCS_GDT     P      85     P      85      4    6   28     3    4    4    7    8   11   13   16   17   21   24   24   25   26   29   32   35   41   46   52 
LCS_GDT     V      86     V      86      4    6   28     1    4    4    6    8   11   14   16   18   21   24   24   25   26   29   32   35   42   48   52 
LCS_GDT     E      87     E      87      4   13   28     0    4    4   10   11   12   14   16   18   21   24   24   25   26   29   32   35   44   48   52 
LCS_GDT     N      88     N      88      8   13   28     6    8    8   10   11   12   12   16   18   21   24   24   25   27   33   37   42   45   48   52 
LCS_GDT     D      89     D      89      8   13   28     5    8    8   10   11   12   12   14   14   21   29   31   33   34   36   38   42   45   48   52 
LCS_GDT     Y      90     Y      90      8   13   28     6    8    8   10   11   12   14   16   18   21   24   24   28   30   35   37   42   45   48   52 
LCS_GDT     L      91     L      91      8   13   28     6    8    8   10   11   12   12   15   17   21   24   27   31   33   36   39   42   45   48   52 
LCS_GDT     K      92     K      92      8   13   28     6    8    8   10   11   12   14   20   23   26   27   30   33   34   36   39   42   45   48   52 
LCS_GDT     T      93     T      93      8   13   28     6    8    8   10   11   12   14   16   22   26   27   29   31   33   36   39   42   45   48   52 
LCS_GDT     V      94     V      94      8   13   28     6    8    8   10   11   12   12   14   17   21   24   28   30   33   36   39   42   45   48   52 
LCS_GDT     F      95     F      95      8   13   26     4    8    8   10   11   12   14   16   20   24   25   28   30   33   36   39   41   45   48   51 
LCS_GDT     A      96     A      96      8   13   26     3    4    8   10   11   12   14   16   20   24   25   28   30   32   34   37   40   45   48   51 
LCS_GDT     D      97     D      97      5   13   26     3    4    6    8   10   11   14   16   20   23   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     N      98     N      98      5   13   26     3    4    7   10   11   12   14   16   20   24   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     P      99     P      99      5   13   26     4    4    8   10   11   12   14   16   20   24   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     Y     100     Y     100      5   11   26     4    4    5    8   10   11   13   16   20   24   25   28   30   32   34   36   40   42   43   51 
LCS_GDT     Y     101     Y     101      5   11   26     4    4    5    8   10   11   14   16   20   24   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     Q     102     Q     102      5   11   26     4    4    5    8   10   11   14   16   20   24   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     H     103     H     103      4   11   26     4    4    4    8   10   11   14   16   20   24   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     I     104     I     104      4   11   26     4    4    5    8   10   11   13   16   20   24   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     Y     105     Y     105      3   11   26     1    3    4    5    6   11   11   12   16   19   24   28   30   32   34   36   40   42   47   51 
LCS_GDT     K     106     K     106      4   11   26     1    3    4    8   10   11   11   14   16   22   25   28   30   32   34   36   40   42   47   51 
LCS_GDT     T     112     T     112      4    6   26     3    3    4    6    7    9   11   15   20   24   25   29   31   32   35   36   40   43   46   50 
LCS_GDT     M     113     M     113      4    6   26     3    3    4    6    8   10   13   16   20   24   28   30   31   33   35   38   43   45   47   51 
LCS_GDT     Q     114     Q     114      4    8   26     3    4    4    7   12   13   15   16   21   24   28   30   32   33   36   39   43   45   48   51 
LCS_GDT     V     115     V     115      4    8   26     0    4    6    7   12   13   15   16   21   24   28   30   32   33   36   39   43   45   48   51 
LCS_GDT     F     116     F     116      4    8   26     0    4    6    7    8   12   16   20   23   26   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     Q     117     Q     117      5    8   26     1    4    5    7    8   12   16   20   23   26   29   31   33   34   36   39   42   45   48   52 
LCS_GDT     I     118     I     118      5    8   26     1    4    6    7    7   11   13   15   20   24   25   28   31   33   36   39   43   48   52   57 
LCS_GDT     Y     119     Y     119      5    8   26     2    4    6    7    7    9   10   12   13   17   20   24   30   33   38   42   46   48   52   57 
LCS_GDT     A     120     A     120      5    8   26     2    4    6    7    7    9   11   17   17   22   25   32   33   34   38   42   46   48   52   57 
LCS_GDT     G     121     G     121      5    8   26     3    4    6    7    7   10   16   21   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     H     122     H     122      3    9   26     3    3    9   11   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     G     123     G     123      5   11   26     3    4    9   11   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     F     124     F     124      5   11   21     2    4    7   10   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     Y     125     Y     125      5   11   21     2    5    9   11   12   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     H     126     H     126      5   11   21     3    5    9   11   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     S     127     S     127      5   11   21     3    4    5    9    9   12   18   22   24   27   28   32   33   34   37   42   46   48   52   57 
LCS_GDT     L     128     L     128      4   11   21     3    4    9   11   13   15   18   22   24   27   28   32   33   34   37   42   46   48   52   57 
LCS_GDT     T     129     T     129      4   11   21     3    4    9   11   13   15   18   22   24   27   28   32   33   34   37   42   46   48   52   57 
LCS_GDT     Q     130     Q     130      5   11   21     3    4    9   11   13   15   18   22   24   27   28   32   33   34   37   42   46   48   52   57 
LCS_GDT     G     131     G     131      5   11   21     3    4    6    8    9   13   15   17   22   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     H     132     H     132      5   11   21     3    5    9   11   13   15   17   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     K     133     K     133      5   11   21     3    5    9   11   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     Y     134     Y     134      5    8   21     3    4    7    9   10   14   18   20   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     I     135     I     135      5    8   21     3    5    9   11   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     F     136     F     136      5    6   21     3    4    9   11   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     S     137     S     137      5    6   21     3    4    7   10   13   15   18   22   24   27   28   32   33   34   38   42   46   48   52   57 
LCS_GDT     I     138     I     138      5    6   21     3    3    7    9    9   10   16   19   23   26   28   30   33   34   35   37   41   47   51   57 
LCS_GDT     G     139     G     139      4    6   21     0    3    7    8    9   10   11   12   12   15   18   21   27   32   33   36   40   42   46   51 
LCS_GDT     E     145     E     145      3    5    8     3    3    4    4    4    5    6    6    8    9   11   13   14   18   20   24   29   31   33   44 
LCS_GDT     V     146     V     146      3    5    8     3    3    4    4    4    5    6    6    7    9   11   13   16   18   20   24   29   31   33   38 
LCS_GDT     R     147     R     147      3    5    8     3    3    4    4    4    5    6   11   11   12   14   17   23   26   29   31   39   42   47   51 
LCS_GDT     A     148     A     148      3    5    8     3    3    6    6    7    8    8   11   12   13   15   19   23   26   32   33   39   43   47   51 
LCS_GDT     L     149     L     149      3    5    8     0    3    3    4    4    7    8   11   12   15   15   21   24   26   32   34   39   43   47   51 
LCS_AVERAGE  LCS_A:   9.16  (   3.61    6.11   17.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9      9     11     11     13     15     18     22     24     27     29     32     33     34     38     42     46     48     52     57 
GDT PERCENT_CA   6.47   6.47   7.91   7.91   9.35  10.79  12.95  15.83  17.27  19.42  20.86  23.02  23.74  24.46  27.34  30.22  33.09  34.53  37.41  41.01
GDT RMS_LOCAL    0.18   0.18   0.77   0.77   1.60   1.82   2.38   2.78   2.96   3.27   4.08   3.95   4.01   4.10   5.47   5.51   6.05   6.18   6.62   7.19
GDT RMS_ALL_CA  29.20  29.20  29.05  29.05  24.42  24.25  24.53  23.80  23.76  23.54  17.68  22.80  22.87  23.01  20.77  21.14  20.50  20.47  20.01  19.65

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         42.329
LGA    E       2      E       2         40.224
LGA    L       3      L       3         34.510
LGA    K       4      K       4         32.452
LGA    D       5      D       5         30.816
LGA    I       6      I       6         25.043
LGA    M       7      M       7         22.236
LGA    H       8      H       8         22.795
LGA    I       9      I       9         20.276
LGA    L      10      L      10         13.738
LGA    E      11      E      11         12.957
LGA    D      12      D      12         14.275
LGA    M      13      M      13          9.874
LGA    K      14      K      14          3.227
LGA    V      15      V      15          1.022
LGA    G      16      G      16          3.920
LGA    V      17      V      17          4.881
LGA    F      18      F      18          1.926
LGA    A      19      A      19          3.836
LGA    T      20      T      20          7.062
LGA    L      21      L      21         10.743
LGA    D      22      D      22         13.740
LGA    E      23      E      23         14.399
LGA    Y      24      Y      24         10.418
LGA    G      25      G      25          5.105
LGA    N      26      N      26          3.465
LGA    P      27      P      27          8.075
LGA    H      28      H      28         12.446
LGA    A      29      A      29         10.326
LGA    R      30      R      30         15.461
LGA    H      31      H      31         20.131
LGA    A      32      A      32         17.928
LGA    H      33      H      33         18.058
LGA    I      34      I      34         19.533
LGA    T      35      T      35         21.065
LGA    A      36      A      36         16.441
LGA    A      37      A      37         15.025
LGA    N      38      N      38         18.535
LGA    E      39      E      39         20.799
LGA    E      40      E      40         16.008
LGA    G      41      G      41         13.056
LGA    I      42      I      42          7.790
LGA    F      43      F      43         12.504
LGA    F      44      F      44         16.167
LGA    M      45      M      45         22.491
LGA    T      46      T      46         24.140
LGA    S      47      S      47         27.773
LGA    P      48      P      48         30.637
LGA    E      49      E      49         31.868
LGA    T      50      T      50         29.581
LGA    H      51      H      51         27.017
LGA    F      52      F      52         22.030
LGA    Y      53      Y      53         26.651
LGA    D      54      D      54         28.331
LGA    Q      55      Q      55         21.794
LGA    L      56      L      56         22.342
LGA    M      57      M      57         26.349
LGA    G      58      G      58         27.889
LGA    D      59      D      59         25.418
LGA    Q      60      Q      60         24.760
LGA    R      61      R      61         20.057
LGA    V      62      V      62         14.886
LGA    A      63      A      63         10.165
LGA    M      64      M      64         10.782
LGA    T      65      T      65          6.552
LGA    A      66      A      66          5.123
LGA    I      67      I      67          3.727
LGA    S      68      S      68          3.884
LGA    E      69      E      69          9.415
LGA    E      70      E      70          6.838
LGA    G      71      G      71         12.737
LGA    Y      72      Y      72         14.873
LGA    L      73      L      73         16.515
LGA    I      74      I      74         13.051
LGA    Q      75      Q      75         11.890
LGA    V      76      V      76          9.878
LGA    V      77      V      77         13.553
LGA    R      78      R      78         10.942
LGA    V      79      V      79         12.939
LGA    E      80      E      80         11.062
LGA    G      81      G      81         14.420
LGA    T      82      T      82         17.068
LGA    A      83      A      83         23.551
LGA    R      84      R      84         27.413
LGA    P      85      P      85         30.571
LGA    V      86      V      86         34.448
LGA    E      87      E      87         38.432
LGA    N      88      N      88         39.640
LGA    D      89      D      89         40.316
LGA    Y      90      Y      90         40.052
LGA    L      91      L      91         38.260
LGA    K      92      K      92         38.108
LGA    T      93      T      93         38.998
LGA    V      94      V      94         38.350
LGA    F      95      F      95         38.439
LGA    A      96      A      96         41.561
LGA    D      97      D      97         47.353
LGA    N      98      N      98         44.519
LGA    P      99      P      99         46.112
LGA    Y     100      Y     100         40.764
LGA    Y     101      Y     101         38.733
LGA    Q     102      Q     102         45.698
LGA    H     103      H     103         44.472
LGA    I     104      I     104         39.259
LGA    Y     105      Y     105         42.736
LGA    K     106      K     106         46.987
LGA    T     112      T     112         42.316
LGA    M     113      M     113         35.641
LGA    Q     114      Q     114         33.726
LGA    V     115      V     115         28.158
LGA    F     116      F     116         23.958
LGA    Q     117      Q     117         18.276
LGA    I     118      I     118         14.056
LGA    Y     119      Y     119         13.566
LGA    A     120      A     120          8.672
LGA    G     121      G     121          4.356
LGA    H     122      H     122          1.792
LGA    G     123      G     123          3.365
LGA    F     124      F     124          3.559
LGA    Y     125      Y     125          3.332
LGA    H     126      H     126          1.113
LGA    S     127      S     127          3.996
LGA    L     128      L     128          0.459
LGA    T     129      T     129          1.924
LGA    Q     130      Q     130          1.580
LGA    G     131      G     131          5.797
LGA    H     132      H     132          3.161
LGA    K     133      K     133          1.535
LGA    Y     134      Y     134          4.277
LGA    I     135      I     135          2.607
LGA    F     136      F     136          2.534
LGA    S     137      S     137          2.291
LGA    I     138      I     138          4.863
LGA    G     139      G     139          8.199
LGA    E     145      E     145         20.217
LGA    V     146      V     146         23.636
LGA    R     147      R     147         28.076
LGA    A     148      A     148         32.261
LGA    L     149      L     149         34.269

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  139    4.0     22    2.78    15.108    12.755     0.765

LGA_LOCAL      RMSD =  2.776  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.631  Number of atoms =  139 
Std_ALL_ATOMS  RMSD = 16.015  (standard rmsd on all 139 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.725140 * X  +  -0.659828 * Y  +   0.196975 * Z  +  28.301977
  Y_new =  -0.687910 * X  +  -0.706959 * Y  +   0.164283 * Z  +  30.457315
  Z_new =   0.030854 * X  +  -0.254629 * Y  +  -0.966546 * Z  +  20.993576 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.884003    0.257590  [ DEG:  -165.2412     14.7588 ]
  Theta =  -0.030859   -3.110734  [ DEG:    -1.7681   -178.2319 ]
  Phi   =  -0.759057    2.382535  [ DEG:   -43.4908    136.5092 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0331TS168_5                                  
REMARK     2: T0331.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0331TS168_5.T0331.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  139   4.0   22   2.78  12.755    16.02
REMARK  ---------------------------------------------------------- 
MOLECULE T0331TS168_5
PFRMAT TS
TARGET T0331
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      22.598  30.255  49.549  1.00 25.00           C
ATOM      2  CA  GLU     2      25.569  28.420  48.069  1.00 25.00           C
ATOM      3  CA  LEU     3      23.436  26.622  45.559  1.00 25.00           C
ATOM      4  CA  LYS     4      25.336  25.772  42.395  1.00 25.00           C
ATOM      5  CA  ASP     5      25.651  29.534  41.747  1.00 25.00           C
ATOM      6  CA  ILE     6      26.058  28.879  37.995  1.00 25.00           C
ATOM      7  CA  MET     7      22.951  26.640  38.024  1.00 25.00           C
ATOM      8  CA  HIS     8      20.972  29.368  39.844  1.00 25.00           C
ATOM      9  CA  ILE     9      22.115  31.954  37.262  1.00 25.00           C
ATOM     10  CA  LEU    10      21.045  29.623  34.417  1.00 25.00           C
ATOM     11  CA  GLU    11      17.623  29.141  36.066  1.00 25.00           C
ATOM     12  CA  ASP    12      17.229  32.934  36.416  1.00 25.00           C
ATOM     13  CA  MET    13      15.444  33.074  33.063  1.00 25.00           C
ATOM     14  CA  LYS    14      13.051  30.780  31.174  1.00 25.00           C
ATOM     15  CA  VAL    15      16.248  28.942  30.312  1.00 25.00           C
ATOM     16  CA  GLY    16      17.825  32.040  28.768  1.00 25.00           C
ATOM     17  CA  VAL    17      21.059  31.401  26.942  1.00 25.00           C
ATOM     18  CA  PHE    18      24.144  31.709  29.117  1.00 25.00           C
ATOM     19  CA  ALA    19      27.582  30.196  28.747  1.00 25.00           C
ATOM     20  CA  THR    20      31.421  30.277  28.753  1.00 25.00           C
ATOM     21  CA  LEU    21      33.119  30.506  25.294  1.00 25.00           C
ATOM     22  CA  ASP    22      36.753  29.830  26.346  1.00 25.00           C
ATOM     23  CA  GLU    23      39.895  31.018  28.194  1.00 25.00           C
ATOM     24  CA  TYR    24      37.420  31.546  31.006  1.00 25.00           C
ATOM     25  CA  GLY    25      35.916  34.938  31.869  1.00 25.00           C
ATOM     26  CA  ASN    26      39.330  36.161  30.641  1.00 25.00           C
ATOM     27  CA  PRO    27      41.277  35.768  27.403  1.00 25.00           C
ATOM     28  CA  HIS    28      38.994  35.300  24.350  1.00 25.00           C
ATOM     29  CA  ALA    29      36.126  34.899  26.856  1.00 25.00           C
ATOM     30  CA  ARG    30      36.174  38.666  27.551  1.00 25.00           C
ATOM     31  CA  HIS    31      36.072  39.385  23.791  1.00 25.00           C
ATOM     32  CA  ALA    32      33.105  36.996  23.389  1.00 25.00           C
ATOM     33  CA  HIS    33      31.284  38.734  26.276  1.00 25.00           C
ATOM     34  CA  ILE    34      31.930  42.146  24.662  1.00 25.00           C
ATOM     35  CA  THR    35      30.573  40.851  21.324  1.00 25.00           C
ATOM     36  CA  ALA    36      27.445  39.516  23.084  1.00 25.00           C
ATOM     37  CA  ALA    37      26.934  42.902  24.799  1.00 25.00           C
ATOM     38  CA  ASN    38      28.369  43.214  28.324  1.00 25.00           C
ATOM     39  CA  GLU    39      29.503  40.725  30.963  1.00 25.00           C
ATOM     40  CA  GLU    40      25.978  39.428  30.928  1.00 25.00           C
ATOM     41  CA  GLY    41      27.360  36.724  28.700  1.00 25.00           C
ATOM     42  CA  ILE    42      24.625  36.262  26.094  1.00 25.00           C
ATOM     43  CA  PHE    43      26.315  33.104  24.810  1.00 25.00           C
ATOM     44  CA  PHE    44      29.213  32.156  22.618  1.00 25.00           C
ATOM     45  CA  MET    45      31.596  30.291  20.244  1.00 25.00           C
ATOM     46  CA  THR    46      34.963  32.022  20.824  1.00 25.00           C
ATOM     47  CA  SER    47      36.566  35.400  19.920  1.00 25.00           C
ATOM     48  CA  PRO    48      40.290  34.919  19.521  1.00 25.00           C
ATOM     49  CA  GLU    49      44.050  35.549  20.121  1.00 25.00           C
ATOM     50  CA  THR    50      45.199  32.272  21.748  1.00 25.00           C
ATOM     51  CA  HIS    51      43.017  30.389  19.353  1.00 25.00           C
ATOM     52  CA  PHE    52      40.424  30.282  22.170  1.00 25.00           C
ATOM     53  CA  TYR    53      40.183  26.474  21.837  1.00 25.00           C
ATOM     54  CA  ASP    54      43.999  26.194  21.995  1.00 25.00           C
ATOM     55  CA  GLN    55      44.055  28.390  25.132  1.00 25.00           C
ATOM     56  CA  LEU    56      41.359  26.199  26.744  1.00 25.00           C
ATOM     57  CA  MET    57      41.373  23.874  29.810  1.00 25.00           C
ATOM     58  CA  GLY    58      40.828  20.359  28.465  1.00 25.00           C
ATOM     59  CA  ASP    59      38.086  20.502  25.830  1.00 25.00           C
ATOM     60  CA  GLN    60      34.772  20.128  27.538  1.00 25.00           C
ATOM     61  CA  ARG    61      36.291  22.419  30.140  1.00 25.00           C
ATOM     62  CA  VAL    62      32.914  24.195  29.798  1.00 25.00           C
ATOM     63  CA  ALA    63      29.392  25.153  28.667  1.00 25.00           C
ATOM     64  CA  MET    64      28.102  22.138  26.628  1.00 25.00           C
ATOM     65  CA  THR    65      25.312  22.483  24.053  1.00 25.00           C
ATOM     66  CA  ALA    66      22.416  23.584  21.845  1.00 25.00           C
ATOM     67  CA  ILE    67      19.020  24.395  20.387  1.00 25.00           C
ATOM     68  CA  SER    68      18.272  25.406  23.992  1.00 25.00           C
ATOM     69  CA  GLU    69      15.589  27.609  25.512  1.00 25.00           C
ATOM     70  CA  GLU    70      14.817  24.421  27.470  1.00 25.00           C
ATOM     71  CA  GLY    71      18.072  23.269  29.177  1.00 25.00           C
ATOM     72  CA  TYR    72      21.311  22.959  27.140  1.00 25.00           C
ATOM     73  CA  LEU    73      22.720  25.383  29.726  1.00 25.00           C
ATOM     74  CA  ILE    74      24.251  27.105  26.650  1.00 25.00           C
ATOM     75  CA  GLN    75      27.126  27.920  24.296  1.00 25.00           C
ATOM     76  CA  VAL    76      30.068  25.614  23.562  1.00 25.00           C
ATOM     77  CA  VAL    77      33.306  23.718  23.987  1.00 25.00           C
ATOM     78  CA  ARG    78      34.773  26.726  22.267  1.00 25.00           C
ATOM     79  CA  VAL    79      35.443  27.166  18.563  1.00 25.00           C
ATOM     80  CA  GLU    80      35.006  30.031  16.150  1.00 25.00           C
ATOM     81  CA  GLY    81      33.741  31.492  12.828  1.00 25.00           C
ATOM     82  CA  THR    82      33.935  35.100  11.535  1.00 25.00           C
ATOM     83  CA  ALA    83      34.277  35.844   7.820  1.00 25.00           C
ATOM     84  CA  ARG    84      31.266  33.752   6.702  1.00 25.00           C
ATOM     85  CA  PRO    85      27.571  33.676   5.774  1.00 25.00           C
ATOM     86  CA  VAL    86      28.806  34.230   2.249  1.00 25.00           C
ATOM     87  CA  GLU    87      25.596  34.464   0.130  1.00 25.00           C
ATOM     88  CA  ASN    88      23.894  31.120   0.716  1.00 25.00           C
ATOM     89  CA  ASP    89      23.979  27.685   2.408  1.00 25.00           C
ATOM     90  CA  TYR    90      26.478  26.431  -0.210  1.00 25.00           C
ATOM     91  CA  LEU    91      28.674  29.514   0.373  1.00 25.00           C
ATOM     92  CA  LYS    92      28.561  28.910   4.153  1.00 25.00           C
ATOM     93  CA  THR    93      29.553  25.249   3.623  1.00 25.00           C
ATOM     94  CA  VAL    94      32.470  26.337   1.392  1.00 25.00           C
ATOM     95  CA  PHE    95      33.614  28.833   4.063  1.00 25.00           C
ATOM     96  CA  ALA    96      33.448  26.091   6.731  1.00 25.00           C
ATOM     97  CA  ASP    97      37.166  25.630   6.050  1.00 25.00           C
ATOM     98  CA  ASN    98      38.160  29.354   6.091  1.00 25.00           C
ATOM     99  CA  PRO    99      39.777  31.176   9.021  1.00 25.00           C
ATOM    100  CA  TYR   100      38.777  30.902  12.664  1.00 25.00           C
ATOM    101  CA  TYR   101      36.958  27.623  11.883  1.00 25.00           C
ATOM    102  CA  GLN   102      40.103  26.257  10.176  1.00 25.00           C
ATOM    103  CA  HIS   103      42.211  27.236  13.221  1.00 25.00           C
ATOM    104  CA  ILE   104      39.716  25.488  15.541  1.00 25.00           C
ATOM    105  CA  TYR   105      39.819  22.420  17.765  1.00 25.00           C
ATOM    106  CA  LYS   106      42.727  21.044  15.756  1.00 25.00           C
ATOM    107  CA  ASP   107      46.172  20.641  14.250  1.00 25.00           C
ATOM    108  CA  GLU   108      45.285  17.432  12.390  1.00 25.00           C
ATOM    109  CA  SER   109      44.673  15.955  15.811  1.00 25.00           C
ATOM    110  CA  SER   110      41.557  13.911  14.832  1.00 25.00           C
ATOM    111  CA  ASP   111      38.451  14.959  16.736  1.00 25.00           C
ATOM    112  CA  THR   112      36.022  17.834  17.506  1.00 25.00           C
ATOM    113  CA  MET   113      34.770  21.277  18.672  1.00 25.00           C
ATOM    114  CA  GLN   114      33.151  23.382  15.994  1.00 25.00           C
ATOM    115  CA  VAL   115      30.409  23.959  18.608  1.00 25.00           C
ATOM    116  CA  PHE   116      29.199  26.921  16.612  1.00 25.00           C
ATOM    117  CA  GLN   117      26.961  28.588  19.171  1.00 25.00           C
ATOM    118  CA  ILE   118      27.805  31.713  17.140  1.00 25.00           C
ATOM    119  CA  TYR   119      29.439  34.934  18.427  1.00 25.00           C
ATOM    120  CA  ALA   120      29.430  38.485  16.994  1.00 25.00           C
ATOM    121  CA  GLY   121      26.176  38.966  15.077  1.00 25.00           C
ATOM    122  CA  HIS   122      24.745  37.105  18.091  1.00 25.00           C
ATOM    123  CA  GLY   123      24.217  33.849  20.095  1.00 25.00           C
ATOM    124  CA  PHE   124      22.439  30.783  18.670  1.00 25.00           C
ATOM    125  CA  TYR   125      22.239  27.025  17.994  1.00 25.00           C
ATOM    126  CA  HIS   126      22.117  24.437  15.210  1.00 25.00           C
ATOM    127  CA  SER   127      21.920  21.881  12.400  1.00 25.00           C
ATOM    128  CA  LEU   128      21.221  19.293  15.056  1.00 25.00           C
ATOM    129  CA  THR   129      18.600  17.952  12.718  1.00 25.00           C
ATOM    130  CA  GLN   130      17.073  19.084   9.367  1.00 25.00           C
ATOM    131  CA  GLY   131      16.123  22.709   9.687  1.00 25.00           C
ATOM    132  CA  HIS   132      18.357  25.373  11.220  1.00 25.00           C
ATOM    133  CA  LYS   133      21.589  27.368  10.825  1.00 25.00           C
ATOM    134  CA  TYR   134      24.347  28.569  13.040  1.00 25.00           C
ATOM    135  CA  ILE   135      23.879  32.216  13.913  1.00 25.00           C
ATOM    136  CA  PHE   136      21.213  34.736  14.828  1.00 25.00           C
ATOM    137  CA  SER   137      20.338  38.416  15.457  1.00 25.00           C
ATOM    138  CA  ILE   138      17.415  39.718  13.421  1.00 25.00           C
ATOM    139  CA  GLY   139      14.282  41.551  12.284  1.00 25.00           C
ATOM    140  CA  GLN   140      10.790  42.402  11.215  1.00 25.00           C
ATOM    141  CA  GLY   141       7.522  44.253  11.222  1.00 25.00           C
ATOM    142  CA  GLU   142       5.280  43.956  14.278  1.00 25.00           C
ATOM    143  CA  HIS   143       4.970  41.660  17.291  1.00 25.00           C
ATOM    144  CA  SER   144       4.853  43.221  20.769  1.00 25.00           C
ATOM    145  CA  GLU   145       3.910  46.846  20.669  1.00 25.00           C
ATOM    146  CA  VAL   146       5.116  50.288  21.718  1.00 25.00           C
ATOM    147  CA  ARG   147       7.387  50.337  24.815  1.00 25.00           C
ATOM    148  CA  ALA   148       7.777  49.310  28.502  1.00 25.00           C
ATOM    149  CA  LEU   149       9.024  46.460  30.721  1.00 25.00           C
TER
END
