
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  139 , name T0331TS393_3
# Molecule2: number of CA atoms  139 ( 1101),  selected  139 , name T0331.pdb
# PARAMETERS: T0331TS393_3.T0331.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        31 - 61          4.97    23.52
  LONGEST_CONTINUOUS_SEGMENT:    31        32 - 62          4.99    23.41
  LCS_AVERAGE:     19.12

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    11         3 - 13          1.68    26.14
  LCS_AVERAGE:      5.83

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:     9         4 - 12          0.18    26.73
  LCS_AVERAGE:      3.71

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  139
LCS_GDT     M       1     M       1      4    4   27     0    3    4    4    5    6    9   12   16   19   21   23   25   27   31   36   40   42   46   53 
LCS_GDT     E       2     E       2      4    4   27     3    3    4    4    6    9   10   12   16   19   21   24   26   30   35   37   41   45   50   56 
LCS_GDT     L       3     L       3      4   11   27     3    3    7    8   10   10   11   13   16   19   21   24   26   30   35   37   41   45   54   60 
LCS_GDT     K       4     K       4      9   11   27     9    9    9    9   11   13   14   17   18   20   25   29   33   37   40   45   51   56   64   66 
LCS_GDT     D       5     D       5      9   11   27     9    9    9    9   11   13   14   17   18   21   26   33   36   40   45   51   54   59   64   66 
LCS_GDT     I       6     I       6      9   11   27     9    9    9    9   11   13   14   17   18   20   26   30   36   39   44   51   54   59   64   66 
LCS_GDT     M       7     M       7      9   11   27     9    9    9    9   11   13   14   16   18   19   25   29   33   36   40   45   51   56   64   66 
LCS_GDT     H       8     H       8      9   11   27     9    9    9    9   11   13   14   17   18   21   26   33   36   39   43   50   54   59   64   66 
LCS_GDT     I       9     I       9      9   11   27     9    9    9    9   11   13   14   17   23   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     L      10     L      10      9   11   27     9    9    9    9   11   13   14   17   18   22   26   33   36   39   44   51   54   59   64   66 
LCS_GDT     E      11     E      11      9   11   27     9    9    9    9   11   13   14   17   18   26   27   33   36   39   43   48   51   58   64   66 
LCS_GDT     D      12     D      12      9   11   27     9    9    9    9   11   14   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     M      13     M      13      4   11   27     3    4    5    9   13   15   19   22   24   26   27   33   36   39   43   48   54   59   64   66 
LCS_GDT     K      14     K      14      4   10   27     3    4    4    7    9   11   12   18   20   24   27   28   31   35   38   44   45   49   54   57 
LCS_GDT     V      15     V      15      4   10   27     3    4    4    7    9   11   12   14   15   18   27   28   31   31   34   39   44   48   50   56 
LCS_GDT     G      16     G      16      6   10   27     3    4    7    7    9   11   12   18   20   24   27   28   31   34   38   44   45   49   54   62 
LCS_GDT     V      17     V      17      6   10   27     3    5    7    7    9   12   13   16   20   24   27   28   31   33   38   44   45   49   54   62 
LCS_GDT     F      18     F      18      6   10   27     3    4    7    7    9   11   13   16   18   25   27   28   31   35   38   44   45   49   57   62 
LCS_GDT     A      19     A      19      6   10   27     3    5    7    7    9   11   12   14   16   19   27   28   32   34   38   44   45   49   57   66 
LCS_GDT     T      20     T      20      6   10   27     3    5    7    7    9   11   12   14   16   19   21   25   29   34   38   44   46   55   60   66 
LCS_GDT     L      21     L      21      6   10   27     3    5    7    7    9   11   12   14   16   19   21   24   27   34   38   44   45   54   60   66 
LCS_GDT     D      22     D      22      4   10   27     3    5    6    7    9   11   12   14   16   19   21   24   27   30   33   37   42   47   50   56 
LCS_GDT     E      23     E      23      4   10   27     3    4    6    7    9   11   12   14   15   16   20   23   25   27   28   32   42   47   50   53 
LCS_GDT     Y      24     Y      24      4    9   27     3    4    6    7    9   11   12   14   16   19   21   25   27   30   33   37   42   47   50   53 
LCS_GDT     G      25     G      25      4    9   27     4    4    4    5    9    9   11   13   16   19   21   25   28   30   35   41   45   49   53   59 
LCS_GDT     N      26     N      26      4    5   27     4    4    4    5    7    9   12   16   18   19   21   29   33   35   40   46   48   50   54   59 
LCS_GDT     P      27     P      27      4    5   27     4    4    4    5   11   13   14   17   18   21   26   30   34   38   40   46   48   54   60   66 
LCS_GDT     H      28     H      28      4    5   18     4    4    4    5    8   13   14   17   18   21   26   30   34   38   40   46   49   55   60   66 
LCS_GDT     A      29     A      29      3    5   18     3    3    4    5   10   13   14   17   18   22   27   31   34   38   40   46   49   55   60   66 
LCS_GDT     R      30     R      30      3    4   18     1    3    5    7    8   10   14   15   20   24   27   31   34   38   40   46   48   54   57   66 
LCS_GDT     H      31     H      31      3    3   31     1    4    4    4    7   10   14   16   20   24   27   31   34   36   39   41   46   51   55   62 
LCS_GDT     A      32     A      32      3    3   31     1    4    4    4    8   10   14   16   20   25   27   31   34   38   44   51   54   59   64   66 
LCS_GDT     H      33     H      33      3    3   31     3    4    4    7    8   10   11   15   20   23   27   31   34   40   45   51   54   59   64   66 
LCS_GDT     I      34     I      34      3    4   31     3    4    5    6    8   10   14   16   20   24   27   31   34   38   45   51   54   59   64   66 
LCS_GDT     T      35     T      35      3    4   31     3    3    4    6    8   10   14   16   20   24   27   31   34   38   45   51   54   59   64   66 
LCS_GDT     A      36     A      36      3    5   31     3    4    4    5    8   10   14   16   20   24   27   31   34   40   45   51   54   59   64   66 
LCS_GDT     A      37     A      37      5    6   31     4    4    5    5   10   11   13   17   21   24   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     N      38     N      38      5    6   31     4    4    5    5    8    8   11   13   16   20   23   30   35   39   42   45   53   59   64   66 
LCS_GDT     E      39     E      39      5    6   31     4    4    5    5    5    7    8    8   10   13   14   21   23   30   34   37   41   44   48   54 
LCS_GDT     E      40     E      40      5    9   31     4    4    5    5    7   10   13   17   17   19   23   25   28   31   32   40   44   49   51   59 
LCS_GDT     G      41     G      41      5    9   31     3    5    6    8    9   12   19   22   24   26   27   30   35   39   42   44   49   53   60   65 
LCS_GDT     I      42     I      42      5    9   31     3    5    6    8    9   12   19   22   24   26   27   33   36   39   43   48   53   59   64   66 
LCS_GDT     F      43     F      43      5    9   31     3    5    6    8    8   10   14   16   20   24   27   31   36   40   45   51   54   59   64   66 
LCS_GDT     F      44     F      44      5    9   31     3    5    6    8    8   12   12   15   19   23   27   31   34   40   45   51   54   59   64   66 
LCS_GDT     M      45     M      45      6    9   31     3    6    6    8    8   12   12   13   18   25   26   31   34   37   41   45   52   58   64   66 
LCS_GDT     T      46     T      46      6    9   31     3    6    6    8    8   10   14   16   20   24   27   31   34   37   44   48   54   58   64   66 
LCS_GDT     S      47     S      47      6    9   31     3    6    6    8    8   10   14   16   20   24   27   31   34   36   39   40   46   51   56   62 
LCS_GDT     P      48     P      48      6    9   31     3    6    6    8    8   10   14   16   20   24   27   31   34   36   39   40   46   51   56   62 
LCS_GDT     E      49     E      49      6    9   31     3    6    6    7    8   10   12   15   17   21   26   31   34   36   39   43   48   52   59   62 
LCS_GDT     T      50     T      50      6    8   31     3    6    6    7    8   10   14   16   20   24   27   31   34   38   44   50   54   58   64   66 
LCS_GDT     H      51     H      51      7    8   31     6    6    7    8    8   11   14   16   20   24   27   31   34   40   45   51   54   59   64   66 
LCS_GDT     F      52     F      52      7    8   31     6    6    7    8    8   11   13   15   20   24   26   28   34   40   45   51   54   59   64   66 
LCS_GDT     Y      53     Y      53      7    8   31     6    6    7    8    8   11   13   16   20   24   27   31   34   37   44   51   54   59   64   66 
LCS_GDT     D      54     D      54      7    8   31     6    6    7    8    8   11   14   16   20   24   27   31   34   40   45   51   54   59   64   66 
LCS_GDT     Q      55     Q      55      7    8   31     6    6    7    8    8   11   14   16   20   24   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     L      56     L      56      7    8   31     6    6    7    8    8   11   14   16   20   24   27   31   34   37   43   48   53   59   62   65 
LCS_GDT     M      57     M      57      7    8   31     3    4    7    8    8   10   13   15   19   23   27   31   34   36   39   42   48   51   55   57 
LCS_GDT     G      58     G      58      4    8   31     0    4    5    5    8    9   12   14   18   22   27   31   34   36   39   40   45   51   52   57 
LCS_GDT     D      59     D      59      4    5   31     3    4    5    5    6    9   10   14   20   24   27   31   34   36   39   40   42   44   47   54 
LCS_GDT     Q      60     Q      60      4    8   31     3    4    7    8    8   11   14   16   20   24   27   31   34   36   39   40   45   49   52   57 
LCS_GDT     R      61     R      61      5    8   31     3    5    7    9   11   14   19   22   24   26   27   31   34   36   39   43   48   51   52   57 
LCS_GDT     V      62     V      62      5    8   31     3    5    7    9   12   14   19   22   24   26   27   31   34   38   42   43   48   51   54   57 
LCS_GDT     A      63     A      63      5    8   25     3    5    7    9   12   14   19   22   24   26   27   30   35   38   43   44   48   56   58   62 
LCS_GDT     M      64     M      64      5    8   25     3    5    6    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     T      65     T      65      5    8   27     3    5    6    9   13   15   17   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     A      66     A      66      5    8   27     0    4    6    7   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     I      67     I      67      4    8   27     2    5    7    9   11   14   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     S      68     S      68      4    5   27     3    3    5    5   11   15   17   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     E      69     E      69      6    7   27     4    4    6    8    9   12   14   17   20   22   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     E      70     E      70      6    7   27     4    4    6    8   10   12   14   17   18   22   26   33   36   40   45   51   54   59   64   66 
LCS_GDT     G      71     G      71      6    7   27     4    4    6    6    8   10   11   15   17   19   21   27   33   40   45   51   54   59   64   66 
LCS_GDT     Y      72     Y      72      6    7   27     4    4    6    6    6    7    8    9   13   18   18   18   20   24   25   29   41   46   50   57 
LCS_GDT     L      73     L      73      6    7   27     0    3    6    6    6    7    9    9   15   18   19   21   24   26   31   40   41   44   51   56 
LCS_GDT     I      74     I      74      6    8   27     3    3    6    6    9   11   12   17   18   19   21   26   28   34   37   46   50   56   64   66 
LCS_GDT     Q      75     Q      75      6   10   27     3    3    6    8    9   11   14   17   18   19   21   26   28   34   38   45   50   58   64   66 
LCS_GDT     V      76     V      76      6   10   27     3    3    6    6    8   11   12   14   17   20   23   30   34   40   45   51   54   59   64   66 
LCS_GDT     V      77     V      77      6   10   27     3    4    6    8    9   11   14   17   18   19   21   24   28   34   38   45   50   59   64   66 
LCS_GDT     R      78     R      78      6   10   27     3    4    6    8    9   11   15   17   21   25   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     V      79     V      79      6   10   27     3    4    6    8    9   12   14   17   18   20   24   30   33   40   45   51   54   59   64   66 
LCS_GDT     E      80     E      80      6   10   27     3    4    6    8    9   12   14   17   18   21   25   30   36   40   45   51   54   59   64   66 
LCS_GDT     G      81     G      81      3   10   27     3    3    4    5    9   11   14   17   18   22   24   29   34   40   45   51   54   59   64   66 
LCS_GDT     T      82     T      82      3   10   27     3    3    6    8    9   11   14   17   18   22   24   28   34   40   45   51   54   59   64   66 
LCS_GDT     A      83     A      83      4   10   27     3    3    5    7    9   11   14   17   18   19   21   24   28   30   36   42   47   51   56   62 
LCS_GDT     R      84     R      84      4   10   27     3    3    6    8    9   11   14   17   18   19   21   24   28   30   34   39   43   46   51   56 
LCS_GDT     P      85     P      85      4    7   27     3    3    4    5    7   10   14   17   18   19   21   24   28   30   34   39   43   46   48   51 
LCS_GDT     V      86     V      86      4    7   27     0    3    4    5    7   10   14   17   18   19   21   24   28   30   34   39   43   46   48   51 
LCS_GDT     E      87     E      87      3   10   27     3    3    3    5    8   11   14   17   18   19   21   24   28   30   34   39   43   46   48   51 
LCS_GDT     N      88     N      88      8   10   27     6    8    8    9    9    9   14   17   18   19   21   24   28   30   34   39   43   46   48   51 
LCS_GDT     D      89     D      89      8   10   28     5    8    8    9    9   11   12   13   15   21   23   28   32   36   39   40   43   46   48   51 
LCS_GDT     Y      90     Y      90      8   10   28     6    8    8    9    9   11   14   17   18   21   24   28   32   34   36   39   43   46   48   51 
LCS_GDT     L      91     L      91      8   10   28     6    8    8    9    9   11   12   15   18   19   21   24   28   30   34   39   43   46   48   51 
LCS_GDT     K      92     K      92      8   10   28     6    8    8    9    9   11   12   13   18   21   24   29   32   34   36   38   43   46   48   51 
LCS_GDT     T      93     T      93      8   10   28     6    8    8    9    9   11   12   15   17   25   26   29   32   34   36   38   43   46   48   51 
LCS_GDT     V      94     V      94      8   10   28     6    8    8    9    9   11   12   13   17   25   26   29   32   34   36   38   42   46   47   51 
LCS_GDT     F      95     F      95      8   10   28     4    8    8    9    9   11   12   15   17   25   26   29   32   34   36   38   39   41   44   46 
LCS_GDT     A      96     A      96      8   10   28     3    4    8    9    9   12   12   15   17   25   26   29   32   34   36   38   39   41   44   46 
LCS_GDT     D      97     D      97      3    9   28     3    3    5    7    9   12   12   14   16   19   24   29   32   34   36   37   39   41   42   45 
LCS_GDT     N      98     N      98      3    9   28     3    3    3    6    9   12   12   14   16   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     P      99     P      99      3    9   28     3    3    5    7    9   12   12   15   17   25   26   29   32   34   36   38   39   41   42   43 
LCS_GDT     Y     100     Y     100      3    9   28     3    3    4    6    9   12   12   15   17   25   26   29   32   34   36   38   39   41   42   43 
LCS_GDT     Y     101     Y     101      5    9   28     4    4    5    7    9   12   12   15   17   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     Q     102     Q     102      5    9   28     4    4    5    7    9   12   12   15   17   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     H     103     H     103      5    9   28     4    4    5    7    9   12   12   15   17   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     I     104     I     104      5    9   28     4    4    5    7    9   12   13   15   17   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     Y     105     Y     105      5    9   28     4    4    5    7    9   12   13   15   17   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     K     106     K     106      3    8   28     3    3    4    5    8   12   13   15   17   25   26   29   32   34   36   38   39   41   42   45 
LCS_GDT     T     112     T     112      4    5   28     3    4    4    5    8   12   13   15   17   25   26   29   32   34   36   38   39   41   42   43 
LCS_GDT     M     113     M     113      4    5   28     3    4    4    5    8   12   13   15   17   25   26   29   32   34   36   38   40   42   42   45 
LCS_GDT     Q     114     Q     114      4    5   28     3    4    4    4    6   12   13   15   16   22   26   31   34   36   38   40   42   43   44   47 
LCS_GDT     V     115     V     115      4    7   28     3    4    4    5    8   12   13   15   18   25   26   31   34   36   39   40   42   43   44   51 
LCS_GDT     F     116     F     116      3    7   28     2    3    4    6    8   12   13   15   17   25   26   29   33   36   39   40   42   45   48   51 
LCS_GDT     Q     117     Q     117      3    7   28     0    4    5    6    8   12   13   15   18   25   26   29   32   36   39   40   43   48   54   62 
LCS_GDT     I     118     I     118      4    7   28     3    3    5    6    7   12   13   15   18   25   26   29   33   39   45   51   54   59   64   66 
LCS_GDT     Y     119     Y     119      4    7   28     3    3    5    6    7   12   13   15   18   22   24   29   34   40   45   51   54   59   64   66 
LCS_GDT     A     120     A     120      4    7   28     3    3    5    6    7    9   13   15   18   25   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     G     121     G     121      4    7   28     3    3    5    5    8   12   17   19   20   25   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     H     122     H     122      4    7   27     3    3    4    5    8    9   17   19   21   25   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     G     123     G     123      4    7   21     3    4    4    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     F     124     F     124      4    7   21     0    4    4    8   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     Y     125     Y     125      4    7   21     2    4    4    6    9   12   16   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     H     126     H     126      4    7   21     4    4    4    8    9   12   16   19   24   26   27   32   35   40   45   51   54   59   64   66 
LCS_GDT     S     127     S     127      4    7   21     4    4    4    6    8   12   13   17   21   25   27   30   32   38   40   46   48   59   62   66 
LCS_GDT     L     128     L     128      4    9   21     4    4    6    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     T     129     T     129      4    9   21     4    4    6    9   13   15   19   22   24   26   27   33   36   39   45   51   53   59   63   66 
LCS_GDT     Q     130     Q     130      6    9   21     3    5    6    9   13   15   17   19   24   26   27   30   33   38   42   46   48   59   62   65 
LCS_GDT     G     131     G     131      6    9   21     4    5    7    9   12   14   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     H     132     H     132      6    9   21     4    5    6    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     K     133     K     133      6    9   21     4    5    7    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     Y     134     Y     134      6    9   21     4    5    7    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     I     135     I     135      6    9   21     4    5    6    9   13   15   19   22   24   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     F     136     F     136      4    9   21     4    4    6    7   10   15   17   19   21   26   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     S     137     S     137      4    7   21     4    4    4    7    8   13   17   19   21   25   27   33   36   40   45   51   54   59   64   66 
LCS_GDT     I     138     I     138      3    7   21     3    3    4    6    8    9   11   15   18   25   27   30   34   40   45   51   54   59   64   66 
LCS_GDT     G     139     G     139      3    7   21     3    3    7    7    7    9   10   11   12   17   23   27   32   37   42   46   51   57   64   66 
LCS_GDT     E     145     E     145      3    5   21     3    3    4    4    5    6    7    7    7   10   11   12   21   24   31   40   45   49   54   58 
LCS_GDT     V     146     V     146      4    5    8     3    3    4    4    5    6    7    7    7    7    7   12   12   14   17   23   23   38   46   47 
LCS_GDT     R     147     R     147      4    5    8     3    3    4    4    5    6    7    7    7   10   11   12   16   17   22   24   29   38   46   51 
LCS_GDT     A     148     A     148      4    5    8     3    3    4    4    5    6    7    7    7   10   11   12   14   27   29   31   37   38   43   48 
LCS_GDT     L     149     L     149      4    5    8     3    3    4    4    5    6    7    7   13   18   21   24   26   27   30   32   39   42   46   53 
LCS_AVERAGE  LCS_A:   9.55  (   3.71    5.83   19.12 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9      9      9      9     13     15     19     22     24     26     27     33     36     40     45     51     54     59     64     66 
GDT PERCENT_CA   6.47   6.47   6.47   6.47   9.35  10.79  13.67  15.83  17.27  18.71  19.42  23.74  25.90  28.78  32.37  36.69  38.85  42.45  46.04  47.48
GDT RMS_LOCAL    0.18   0.18   0.18   0.18   1.75   2.08   2.43   2.69   7.07   3.21   3.41   4.42   4.66   5.37   5.66   6.02   6.23   7.67   6.83   6.91
GDT RMS_ALL_CA  26.73  26.73  26.73  26.73  21.81  21.52  21.89  21.77  21.78  21.62  21.31  19.66  19.37  17.50  17.47  17.33  17.18  17.47  17.27  17.34

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         24.357
LGA    E       2      E       2         19.949
LGA    L       3      L       3         16.068
LGA    K       4      K       4         10.824
LGA    D       5      D       5          8.361
LGA    I       6      I       6          8.275
LGA    M       7      M       7          8.726
LGA    H       8      H       8          6.517
LGA    I       9      I       9          4.794
LGA    L      10      L      10          6.269
LGA    E      11      E      11          4.992
LGA    D      12      D      12          3.389
LGA    M      13      M      13          2.374
LGA    K      14      K      14          8.023
LGA    V      15      V      15         12.047
LGA    G      16      G      16         11.507
LGA    V      17      V      17         11.024
LGA    F      18      F      18         12.335
LGA    A      19      A      19         12.806
LGA    T      20      T      20         14.194
LGA    L      21      L      21         16.695
LGA    D      22      D      22         23.391
LGA    E      23      E      23         26.158
LGA    Y      24      Y      24         28.300
LGA    G      25      G      25         24.987
LGA    N      26      N      26         25.556
LGA    P      27      P      27         20.921
LGA    H      28      H      28         19.708
LGA    A      29      A      29         17.177
LGA    R      30      R      30         21.055
LGA    H      31      H      31         23.210
LGA    A      32      A      32         18.805
LGA    H      33      H      33         16.836
LGA    I      34      I      34         16.329
LGA    T      35      T      35         17.303
LGA    A      36      A      36         11.229
LGA    A      37      A      37          7.107
LGA    N      38      N      38          8.110
LGA    E      39      E      39         11.295
LGA    E      40      E      40          8.171
LGA    G      41      G      41          3.503
LGA    I      42      I      42          3.394
LGA    F      43      F      43          8.464
LGA    F      44      F      44         13.001
LGA    M      45      M      45         19.123
LGA    T      46      T      46         22.664
LGA    S      47      S      47         29.058
LGA    P      48      P      48         32.384
LGA    E      49      E      49         33.180
LGA    T      50      T      50         28.794
LGA    H      51      H      51         25.817
LGA    F      52      F      52         22.154
LGA    Y      53      Y      53         22.457
LGA    D      54      D      54         19.206
LGA    Q      55      Q      55         14.410
LGA    L      56      L      56         13.040
LGA    M      57      M      57         12.792
LGA    G      58      G      58          9.900
LGA    D      59      D      59          9.563
LGA    Q      60      Q      60          9.631
LGA    R      61      R      61          2.720
LGA    V      62      V      62          1.454
LGA    A      63      A      63          1.000
LGA    M      64      M      64          2.323
LGA    T      65      T      65          3.581
LGA    A      66      A      66          3.361
LGA    I      67      I      67          3.540
LGA    S      68      S      68          3.973
LGA    E      69      E      69          9.561
LGA    E      70      E      70         10.708
LGA    G      71      G      71         15.593
LGA    Y      72      Y      72         18.931
LGA    L      73      L      73         19.611
LGA    I      74      I      74         14.590
LGA    Q      75      Q      75         11.895
LGA    V      76      V      76          7.846
LGA    V      77      V      77          9.042
LGA    R      78      R      78          5.551
LGA    V      79      V      79          7.629
LGA    E      80      E      80          9.156
LGA    G      81      G      81         13.491
LGA    T      82      T      82         18.455
LGA    A      83      A      83         25.213
LGA    R      84      R      84         29.830
LGA    P      85      P      85         33.181
LGA    V      86      V      86         36.008
LGA    E      87      E      87         42.366
LGA    N      88      N      88         44.842
LGA    D      89      D      89         43.572
LGA    Y      90      Y      90         42.384
LGA    L      91      L      91         41.111
LGA    K      92      K      92         39.773
LGA    T      93      T      93         38.956
LGA    V      94      V      94         38.579
LGA    F      95      F      95         38.395
LGA    A      96      A      96         39.559
LGA    D      97      D      97         44.737
LGA    N      98      N      98         43.132
LGA    P      99      P      99         44.421
LGA    Y     100      Y     100         39.799
LGA    Y     101      Y     101         35.746
LGA    Q     102      Q     102         41.394
LGA    H     103      H     103         39.971
LGA    I     104      I     104         32.973
LGA    Y     105      Y     105         36.117
LGA    K     106      K     106         39.763
LGA    T     112      T     112         34.190
LGA    M     113      M     113         30.975
LGA    Q     114      Q     114         28.590
LGA    V     115      V     115         27.893
LGA    F     116      F     116         22.541
LGA    Q     117      Q     117         19.100
LGA    I     118      I     118         14.553
LGA    Y     119      Y     119         14.483
LGA    A     120      A     120          9.601
LGA    G     121      G     121         10.864
LGA    H     122      H     122          7.440
LGA    G     123      G     123          2.559
LGA    F     124      F     124          1.967
LGA    Y     125      Y     125          3.645
LGA    H     126      H     126          4.354
LGA    S     127      S     127          6.820
LGA    L     128      L     128          2.022
LGA    T     129      T     129          2.426
LGA    Q     130      Q     130          4.203
LGA    G     131      G     131          1.835
LGA    H     132      H     132          1.101
LGA    K     133      K     133          1.456
LGA    Y     134      Y     134          1.638
LGA    I     135      I     135          3.061
LGA    F     136      F     136          6.327
LGA    S     137      S     137          9.894
LGA    I     138      I     138         15.183
LGA    G     139      G     139         19.661
LGA    E     145      E     145         20.813
LGA    V     146      V     146         22.536
LGA    R     147      R     147         23.053
LGA    A     148      A     148         23.303
LGA    L     149      L     149         26.281

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  139    4.0     22    2.69    16.367    13.040     0.790

LGA_LOCAL      RMSD =  2.686  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.777  Number of atoms =  139 
Std_ALL_ATOMS  RMSD = 15.649  (standard rmsd on all 139 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.578449 * X  +  -0.385909 * Y  +   0.718659 * Z  +  23.849495
  Y_new =  -0.330229 * X  +  -0.694806 * Y  +  -0.638901 * Z  +  34.076595
  Z_new =   0.745886 * X  +  -0.606893 * Y  +   0.274471 * Z  +  15.902432 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.146068    1.995525  [ DEG:   -65.6649    114.3351 ]
  Theta =  -0.841864   -2.299728  [ DEG:   -48.2353   -131.7647 ]
  Phi   =  -2.622855    0.518738  [ DEG:  -150.2785     29.7215 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0331TS393_3                                  
REMARK     2: T0331.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0331TS393_3.T0331.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  139   4.0   22   2.69  13.040    15.65
REMARK  ---------------------------------------------------------- 
MOLECULE T0331TS393_3
PFRMAT TS
TARGET T0331
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      -5.991  37.646  22.539  1.00 25.00           C
ATOM      2  CA  GLU     2      -2.880  35.477  22.153  1.00 25.00           C
ATOM      3  CA  LEU     3      -0.436  37.074  19.729  1.00 25.00           C
ATOM      4  CA  LYS     4       1.450  33.813  19.867  1.00 25.00           C
ATOM      5  CA  ASP     5       3.878  30.917  19.253  1.00 25.00           C
ATOM      6  CA  ILE     6       6.800  33.383  19.026  1.00 25.00           C
ATOM      7  CA  MET     7       5.706  35.020  22.310  1.00 25.00           C
ATOM      8  CA  HIS     8       5.514  31.583  23.988  1.00 25.00           C
ATOM      9  CA  ILE     9       9.024  30.736  22.713  1.00 25.00           C
ATOM     10  CA  LEU    10      10.346  34.065  24.069  1.00 25.00           C
ATOM     11  CA  GLU    11       8.726  33.354  27.465  1.00 25.00           C
ATOM     12  CA  ASP    12      10.316  29.869  27.521  1.00 25.00           C
ATOM     13  CA  MET    13      11.839  27.139  25.374  1.00 25.00           C
ATOM     14  CA  LYS    14      10.652  25.897  21.920  1.00 25.00           C
ATOM     15  CA  VAL    15      12.090  28.277  19.282  1.00 25.00           C
ATOM     16  CA  GLY    16      13.340  31.714  20.191  1.00 25.00           C
ATOM     17  CA  VAL    17      16.380  31.409  22.475  1.00 25.00           C
ATOM     18  CA  PHE    18      17.336  34.821  21.110  1.00 25.00           C
ATOM     19  CA  ALA    19      21.077  35.245  20.423  1.00 25.00           C
ATOM     20  CA  THR    20      23.797  37.396  19.020  1.00 25.00           C
ATOM     21  CA  LEU    21      26.564  39.511  17.619  1.00 25.00           C
ATOM     22  CA  ASP    22      25.158  41.694  14.862  1.00 25.00           C
ATOM     23  CA  GLU    23      27.796  41.789  12.126  1.00 25.00           C
ATOM     24  CA  TYR    24      26.825  45.395  11.348  1.00 25.00           C
ATOM     25  CA  GLY    25      24.331  47.046  13.670  1.00 25.00           C
ATOM     26  CA  ASN    26      27.609  48.686  14.684  1.00 25.00           C
ATOM     27  CA  PRO    27      29.689  46.321  16.752  1.00 25.00           C
ATOM     28  CA  HIS    28      30.063  46.335  20.520  1.00 25.00           C
ATOM     29  CA  ALA    29      28.206  44.618  23.395  1.00 25.00           C
ATOM     30  CA  ARG    30      25.341  47.140  23.083  1.00 25.00           C
ATOM     31  CA  HIS    31      25.160  46.503  19.311  1.00 25.00           C
ATOM     32  CA  ALA    32      25.053  42.725  19.929  1.00 25.00           C
ATOM     33  CA  HIS    33      22.237  43.197  22.481  1.00 25.00           C
ATOM     34  CA  ILE    34      20.287  45.333  19.972  1.00 25.00           C
ATOM     35  CA  THR    35      20.747  42.642  17.286  1.00 25.00           C
ATOM     36  CA  ALA    36      19.503  39.963  19.724  1.00 25.00           C
ATOM     37  CA  ALA    37      16.442  42.106  20.558  1.00 25.00           C
ATOM     38  CA  ASN    38      16.703  44.502  23.464  1.00 25.00           C
ATOM     39  CA  GLU    39      19.271  45.528  26.128  1.00 25.00           C
ATOM     40  CA  GLU    40      18.586  41.941  27.378  1.00 25.00           C
ATOM     41  CA  GLY    41      17.106  39.110  25.240  1.00 25.00           C
ATOM     42  CA  ILE    42      20.180  36.878  25.754  1.00 25.00           C
ATOM     43  CA  PHE    43      23.124  38.479  24.002  1.00 25.00           C
ATOM     44  CA  PHE    44      26.872  38.752  23.375  1.00 25.00           C
ATOM     45  CA  MET    45      30.126  38.359  21.395  1.00 25.00           C
ATOM     46  CA  THR    46      30.868  41.055  18.823  1.00 25.00           C
ATOM     47  CA  SER    47      31.946  42.157  15.305  1.00 25.00           C
ATOM     48  CA  PRO    48      34.570  43.696  13.000  1.00 25.00           C
ATOM     49  CA  GLU    49      34.255  47.432  13.621  1.00 25.00           C
ATOM     50  CA  THR    50      34.875  47.714  17.316  1.00 25.00           C
ATOM     51  CA  HIS    51      37.160  44.729  17.549  1.00 25.00           C
ATOM     52  CA  PHE    52      36.099  41.080  18.023  1.00 25.00           C
ATOM     53  CA  TYR    53      38.872  40.585  20.618  1.00 25.00           C
ATOM     54  CA  ASP    54      37.734  43.737  22.471  1.00 25.00           C
ATOM     55  CA  GLN    55      34.120  42.468  22.461  1.00 25.00           C
ATOM     56  CA  LEU    56      35.278  39.088  23.840  1.00 25.00           C
ATOM     57  CA  MET    57      35.927  40.013  27.474  1.00 25.00           C
ATOM     58  CA  GLY    58      35.254  37.850  30.531  1.00 25.00           C
ATOM     59  CA  ASP    59      32.860  34.958  30.649  1.00 25.00           C
ATOM     60  CA  GLN    60      32.562  35.550  26.860  1.00 25.00           C
ATOM     61  CA  ARG    61      31.041  38.871  28.008  1.00 25.00           C
ATOM     62  CA  VAL    62      27.586  37.179  28.075  1.00 25.00           C
ATOM     63  CA  ALA    63      27.512  34.053  25.958  1.00 25.00           C
ATOM     64  CA  MET    64      24.512  33.195  23.686  1.00 25.00           C
ATOM     65  CA  THR    65      22.166  30.502  22.290  1.00 25.00           C
ATOM     66  CA  ALA    66      19.752  27.660  21.904  1.00 25.00           C
ATOM     67  CA  ILE    67      16.843  25.182  22.347  1.00 25.00           C
ATOM     68  CA  SER    68      18.386  24.786  25.800  1.00 25.00           C
ATOM     69  CA  GLU    69      20.154  24.697  29.167  1.00 25.00           C
ATOM     70  CA  GLU    70      16.977  25.917  30.732  1.00 25.00           C
ATOM     71  CA  GLY    71      15.758  29.299  29.546  1.00 25.00           C
ATOM     72  CA  TYR    72      18.382  30.924  27.276  1.00 25.00           C
ATOM     73  CA  LEU    73      21.531  32.527  28.733  1.00 25.00           C
ATOM     74  CA  ILE    74      23.379  29.503  27.200  1.00 25.00           C
ATOM     75  CA  GLN    75      26.290  28.613  24.906  1.00 25.00           C
ATOM     76  CA  VAL    76      27.251  29.133  21.260  1.00 25.00           C
ATOM     77  CA  VAL    77      29.278  32.320  21.463  1.00 25.00           C
ATOM     78  CA  ARG    78      27.936  34.102  18.363  1.00 25.00           C
ATOM     79  CA  VAL    79      30.845  35.855  16.682  1.00 25.00           C
ATOM     80  CA  GLU    80      31.958  37.482  13.409  1.00 25.00           C
ATOM     81  CA  GLY    81      31.005  35.675  10.144  1.00 25.00           C
ATOM     82  CA  THR    82      32.100  38.491   7.775  1.00 25.00           C
ATOM     83  CA  ALA    83      31.273  36.953   4.384  1.00 25.00           C
ATOM     84  CA  ARG    84      28.832  34.396   2.878  1.00 25.00           C
ATOM     85  CA  PRO    85      26.225  31.688   3.463  1.00 25.00           C
ATOM     86  CA  VAL    86      25.086  28.186   2.483  1.00 25.00           C
ATOM     87  CA  GLU    87      27.312  28.139  -0.565  1.00 25.00           C
ATOM     88  CA  ASN    88      27.610  24.453   0.130  1.00 25.00           C
ATOM     89  CA  ASP    89      28.685  23.942   3.771  1.00 25.00           C
ATOM     90  CA  TYR    90      32.332  23.561   2.667  1.00 25.00           C
ATOM     91  CA  LEU    91      32.071  26.780   0.608  1.00 25.00           C
ATOM     92  CA  LYS    92      30.594  28.619   3.625  1.00 25.00           C
ATOM     93  CA  THR    93      33.448  27.337   5.835  1.00 25.00           C
ATOM     94  CA  VAL    94      36.014  28.519   3.248  1.00 25.00           C
ATOM     95  CA  PHE    95      34.349  31.966   3.135  1.00 25.00           C
ATOM     96  CA  ALA    96      34.442  32.164   6.959  1.00 25.00           C
ATOM     97  CA  ASP    97      37.286  30.070   8.333  1.00 25.00           C
ATOM     98  CA  ASN    98      39.218  33.163   9.297  1.00 25.00           C
ATOM     99  CA  PRO    99      38.379  36.832   8.515  1.00 25.00           C
ATOM    100  CA  TYR   100      38.016  37.259  12.312  1.00 25.00           C
ATOM    101  CA  TYR   101      36.098  34.189  13.559  1.00 25.00           C
ATOM    102  CA  GLN   102      39.399  32.440  14.405  1.00 25.00           C
ATOM    103  CA  HIS   103      40.582  35.543  16.313  1.00 25.00           C
ATOM    104  CA  ILE   104      37.282  35.638  18.253  1.00 25.00           C
ATOM    105  CA  TYR   105      37.785  32.096  19.548  1.00 25.00           C
ATOM    106  CA  LYS   106      41.542  31.344  19.569  1.00 25.00           C
ATOM    107  CA  ASP   107      45.227  31.626  18.641  1.00 25.00           C
ATOM    108  CA  GLU   108      46.138  28.151  19.804  1.00 25.00           C
ATOM    109  CA  SER   109      42.863  26.127  19.626  1.00 25.00           C
ATOM    110  CA  SER   110      42.649  24.335  22.967  1.00 25.00           C
ATOM    111  CA  ASP   111      39.089  25.589  23.477  1.00 25.00           C
ATOM    112  CA  THR   112      35.824  27.262  22.295  1.00 25.00           C
ATOM    113  CA  MET   113      33.441  28.080  19.436  1.00 25.00           C
ATOM    114  CA  GLN   114      33.121  31.338  17.535  1.00 25.00           C
ATOM    115  CA  VAL   115      31.610  30.960  14.079  1.00 25.00           C
ATOM    116  CA  PHE   116      28.597  29.556  15.903  1.00 25.00           C
ATOM    117  CA  GLN   117      26.513  31.967  13.867  1.00 25.00           C
ATOM    118  CA  ILE   118      25.287  35.324  12.535  1.00 25.00           C
ATOM    119  CA  TYR   119      24.380  38.256  10.335  1.00 25.00           C
ATOM    120  CA  ALA   120      21.092  39.684  11.743  1.00 25.00           C
ATOM    121  CA  GLY   121      17.715  38.002  11.364  1.00 25.00           C
ATOM    122  CA  HIS   122      19.570  34.854  12.552  1.00 25.00           C
ATOM    123  CA  GLY   123      21.579  34.582  15.818  1.00 25.00           C
ATOM    124  CA  PHE   124      22.000  30.854  16.202  1.00 25.00           C
ATOM    125  CA  TYR   125      23.992  27.613  16.651  1.00 25.00           C
ATOM    126  CA  HIS   126      25.406  24.301  15.529  1.00 25.00           C
ATOM    127  CA  SER   127      25.234  20.937  13.801  1.00 25.00           C
ATOM    128  CA  LEU   128      21.796  20.761  15.458  1.00 25.00           C
ATOM    129  CA  THR   129      20.756  17.290  14.199  1.00 25.00           C
ATOM    130  CA  GLN   130      21.219  16.075  10.597  1.00 25.00           C
ATOM    131  CA  GLY   131      19.256  19.016   9.185  1.00 25.00           C
ATOM    132  CA  HIS   132      19.609  22.616  10.413  1.00 25.00           C
ATOM    133  CA  LYS   133      21.938  25.389   9.074  1.00 25.00           C
ATOM    134  CA  TYR   134      22.566  28.981  10.213  1.00 25.00           C
ATOM    135  CA  ILE   135      21.763  32.411   8.731  1.00 25.00           C
ATOM    136  CA  PHE   136      18.139  33.233   7.915  1.00 25.00           C
ATOM    137  CA  SER   137      15.758  36.140   7.330  1.00 25.00           C
ATOM    138  CA  ILE   138      14.785  36.433   3.695  1.00 25.00           C
ATOM    139  CA  GLY   139      12.241  36.981   0.982  1.00 25.00           C
ATOM    140  CA  GLN   140      10.118  39.934  -0.287  1.00 25.00           C
ATOM    141  CA  GLY   141       6.851  38.909  -1.845  1.00 25.00           C
ATOM    142  CA  GLU   142       7.103  38.361  -5.597  1.00 25.00           C
ATOM    143  CA  HIS   143       5.715  35.102  -7.023  1.00 25.00           C
ATOM    144  CA  SER   144       6.293  31.436  -7.453  1.00 25.00           C
ATOM    145  CA  GLU   145       6.303  29.886  -4.007  1.00 25.00           C
ATOM    146  CA  VAL   146       2.835  28.601  -4.796  1.00 25.00           C
ATOM    147  CA  ARG   147       0.202  28.664  -2.007  1.00 25.00           C
ATOM    148  CA  ALA   148      -2.228  28.672   0.904  1.00 25.00           C
ATOM    149  CA  LEU   149      -2.264  26.054   3.622  1.00 25.00           C
TER
END
