
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  149 (  149),  selected  139 , name T0331TS393_4
# Molecule2: number of CA atoms  139 ( 1101),  selected  139 , name T0331.pdb
# PARAMETERS: T0331TS393_4.T0331.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        66 - 94          4.97    19.99
  LCS_AVERAGE:     17.73

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13        51 - 63          1.85    19.94
  LCS_AVERAGE:      6.11

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10         4 - 13          0.54    27.95
  LCS_AVERAGE:      3.51

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  139
LCS_GDT     M       1     M       1      4    5   27     0    5    6    7    9   12   16   18   19   21   23   24   29   34   37   39   43   46   49   50 
LCS_GDT     E       2     E       2      4   12   27     3    5    6    7    9   13   16   18   19   23   24   26   29   34   37   39   43   46   49   50 
LCS_GDT     L       3     L       3      4   12   27     3    5    6    7   11   13   16   18   19   23   24   26   29   34   37   39   43   46   49   50 
LCS_GDT     K       4     K       4     10   12   27     9    9   10   11   12   13   16   18   19   23   24   26   29   34   37   39   43   46   49   50 
LCS_GDT     D       5     D       5     10   12   27     9    9   10   11   12   13   16   18   19   23   24   26   29   34   37   39   43   46   49   50 
LCS_GDT     I       6     I       6     10   12   27     9    9   10   11   12   13   16   18   19   23   24   27   30   34   37   39   43   46   49   50 
LCS_GDT     M       7     M       7     10   12   27     9    9   10   11   12   13   16   18   19   23   24   27   30   34   37   39   43   46   49   50 
LCS_GDT     H       8     H       8     10   12   27     9    9   10   11   12   13   16   18   19   23   24   27   30   34   37   39   43   46   49   50 
LCS_GDT     I       9     I       9     10   12   27     9    9   10   11   12   13   16   18   19   23   25   27   30   34   37   39   43   46   49   50 
LCS_GDT     L      10     L      10     10   12   27     9    9   10   11   12   13   16   18   19   21   23   27   30   34   37   39   43   46   49   54 
LCS_GDT     E      11     E      11     10   12   27     9    9   10   11   12   13   16   18   19   21   23   24   26   33   37   39   42   46   49   52 
LCS_GDT     D      12     D      12     10   12   27     9    9   10   11   12   13   16   18   19   21   24   26   30   34   37   39   43   46   51   56 
LCS_GDT     M      13     M      13     10   12   27     3    6   10   11   12   13   16   18   19   21   23   24   26   31   34   38   42   46   51   56 
LCS_GDT     K      14     K      14      5   11   27     3    5    5    5    7   10   11   16   18   21   23   26   30   34   37   39   43   46   51   56 
LCS_GDT     V      15     V      15      5    6   27     3    5    5    5   10   13   16   18   20   21   23   25   28   32   40   47   49   51   55   57 
LCS_GDT     G      16     G      16      5    8   27     3    5   10   11   12   13   16   18   19   21   23   25   33   38   42   47   49   51   55   57 
LCS_GDT     V      17     V      17      5    8   27     3    5    6   11   12   13   16   17   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     F      18     F      18      4    8   27     3    4    5    7   10   13   15   18   19   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     A      19     A      19      5    8   27     3    4    6    7    8    9   15   18   21   25   27   29   31   36   41   46   49   51   55   57 
LCS_GDT     T      20     T      20      5    8   27     3    4    6    7    8   11   12   16   19   20   23   24   31   34   38   42   49   51   55   57 
LCS_GDT     L      21     L      21      5    8   27     3    4    6    7    8   11   13   15   18   19   21   24   26   28   32   36   43   44   53   55 
LCS_GDT     D      22     D      22      5    8   27     3    4    6    7    8    9   10   11   17   19   21   24   26   28   32   35   39   44   46   49 
LCS_GDT     E      23     E      23      5    8   27     3    4    6    7    8    9   10   11   14   19   20   24   26   28   32   35   39   44   46   48 
LCS_GDT     Y      24     Y      24      4    8   27     3    4    4    7    8    9   10   13   17   19   21   24   26   28   32   33   35   36   46   48 
LCS_GDT     G      25     G      25      4    6   27     3    4    4    4    5    7   10   13   17   19   23   25   28   31   33   39   43   45   51   53 
LCS_GDT     N      26     N      26      4    6   27     3    4    4    4    7   10   12   15   19   20   23   25   28   31   37   39   46   48   53   56 
LCS_GDT     P      27     P      27      4    6   27     3    4    6    8   12   14   16   17   20   21   23   25   30   33   37   40   47   51   55   57 
LCS_GDT     H      28     H      28      3    6   16     3    4    4    6   12   14   17   19   20   22   23   27   33   38   42   47   49   51   55   57 
LCS_GDT     A      29     A      29      3    5   18     2    3    6    9   12   15   17   19   20   23   25   27   33   38   42   47   49   51   55   57 
LCS_GDT     R      30     R      30      3    4   18     1    3    4    6   11   15   17   19   20   23   25   27   30   36   42   47   49   51   55   57 
LCS_GDT     H      31     H      31      3    3   18     1    5    6    7    9   13   16   19   20   23   25   27   30   34   37   40   46   51   55   57 
LCS_GDT     A      32     A      32      3    3   18     1    3    6    7    9   13   16   19   20   23   25   27   30   34   42   47   49   51   55   57 
LCS_GDT     H      33     H      33      3    3   18     3    3    3    8    9    9   12   14   16   23   25   27   30   34   37   39   43   46   51   56 
LCS_GDT     I      34     I      34      3    4   18     3    3    3    4    4    7   10   14   18   23   25   27   30   32   37   39   43   46   49   56 
LCS_GDT     T      35     T      35      3    4   18     3    3    5    5    7    8   10   13   18   23   25   27   30   32   36   39   43   46   49   56 
LCS_GDT     A      36     A      36      3    6   18     3    3    3    6    6    8   10   11   15   23   25   27   30   32   36   39   43   46   51   56 
LCS_GDT     A      37     A      37      3    6   24     3    3    3    5    5    8   11   14   17   20   23   27   29   31   33   35   38   44   49   56 
LCS_GDT     N      38     N      38      3    6   24     3    3    4    5    5    8    9   13   14   16   18   22   24   26   31   35   37   40   44   51 
LCS_GDT     E      39     E      39      3    6   24     3    3    4    5    8   10   10   13   14   15   18   22   24   28   31   35   37   41   48   52 
LCS_GDT     E      40     E      40      3    6   24     3    3    4    5    5    8    9   11   13   17   20   23   28   31   33   35   39   44   51   56 
LCS_GDT     G      41     G      41      4    9   24     3    4    6    8    9   10   12   15   17   20   23   27   29   31   33   35   38   44   51   56 
LCS_GDT     I      42     I      42      4    9   24     3    4    5    8    9   13   16   19   19   23   25   27   29   31   35   39   43   46   51   56 
LCS_GDT     F      43     F      43      4    9   24     3    4    6    8    9   13   16   19   20   23   25   27   30   32   36   39   43   46   51   56 
LCS_GDT     F      44     F      44      4    9   26     3    4    6    8    9   15   17   19   20   23   25   27   30   33   42   47   49   51   55   57 
LCS_GDT     M      45     M      45      4    9   26     3    6    8   10   12   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     T      46     T      46      4    9   26     3    6    8   10   12   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     S      47     S      47      4    9   26     3    6    8   10   12   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     P      48     P      48      4    9   26     3    5    8   10   11   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     E      49     E      49      4    9   26     3    6    8   10   12   15   17   19   20   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     T      50     T      50      4    9   26     3    4    5    9   12   15   17   19   20   23   25   29   33   38   42   47   49   51   55   57 
LCS_GDT     H      51     H      51      7   13   26     7    7    7   11   14   15   17   19   20   23   25   27   30   38   42   47   49   51   55   57 
LCS_GDT     F      52     F      52      7   13   26     7    7    7    9   14   15   15   17   19   23   25   27   30   36   41   47   49   51   55   57 
LCS_GDT     Y      53     Y      53      7   13   26     7    7    7   11   14   15   17   19   20   22   23   27   31   38   42   47   49   51   55   57 
LCS_GDT     D      54     D      54      7   13   26     7    7    7   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     Q      55     Q      55      7   13   26     7    7    8   10   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     L      56     L      56      7   13   26     7    7    7   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     M      57     M      57      7   13   26     7    7    7   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     G      58     G      58      4   13   26     4    4    7   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     D      59     D      59      4   13   26     4    4    6   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     Q      60     Q      60      4   13   26     4    4    7    9   14   15   16   19   20   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     R      61     R      61      4   13   26     3    6    8   10   12   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     V      62     V      62      4   13   26     3    5    8   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     A      63     A      63      4   13   26     3    4    7   11   14   15   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     M      64     M      64      4    8   26     3    4    5    9   11   14   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     T      65     T      65      4    8   27     3    4    5    9   11   14   17   19   21   25   27   29   32   36   41   47   49   51   55   57 
LCS_GDT     A      66     A      66      4    8   29     3    4    4    8   10   13   17   19   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     I      67     I      67      4    8   29     3    4    6    8    9   13   17   19   21   25   27   29   31   36   41   44   49   51   55   57 
LCS_GDT     S      68     S      68      4    6   29     3    4    6    8   10   13   14   16   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     E      69     E      69      4    6   29     3    4    4    6    7    8   11   16   17   21   24   29   33   38   42   47   49   51   55   57 
LCS_GDT     E      70     E      70      4    6   29     3    4    6    8   12   14   16   17   20   21   23   25   28   31   36   42   44   48   55   57 
LCS_GDT     G      71     G      71      4    6   29     3    4    4    6    7   11   13   17   19   20   22   25   26   31   33   37   42   46   51   56 
LCS_GDT     Y      72     Y      72      4    6   29     3    3    4    6    7    8    9    9   11   14   19   24   25   27   28   32   34   43   44   49 
LCS_GDT     L      73     L      73      4    6   29     3    4    4    5    7   11   14   17   19   20   22   24   26   27   28   28   34   40   44   49 
LCS_GDT     I      74     I      74      4    6   29     3    4    4    5    7   11   14   17   19   20   22   24   26   27   28   28   36   43   44   49 
LCS_GDT     Q      75     Q      75      4    6   29     3    4    4    5    7   12   14   17   19   20   22   24   26   27   28   28   30   38   44   49 
LCS_GDT     V      76     V      76      4    6   29     3    4    4    5    7   12   14   17   19   20   21   24   26   27   28   28   36   43   44   49 
LCS_GDT     V      77     V      77      3    6   29     3    3    4    5    7   12   14   17   19   20   22   25   27   31   33   36   37   45   51   56 
LCS_GDT     R      78     R      78      3    6   29     3    3    3    5    7   11   14   17   20   20   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     V      79     V      79      4    6   29     1    3    4    5    7   12   14   17   19   20   22   25   27   31   35   39   43   46   51   56 
LCS_GDT     E      80     E      80      4    6   29     3    3    4    5    7   12   14   17   19   20   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     G      81     G      81      4    6   29     3    3    4    5    7   10   14   17   19   20   22   24   26   31   34   39   43   46   51   56 
LCS_GDT     T      82     T      82      4    6   29     3    3    4    5    7   12   14   17   19   20   22   24   26   27   28   32   40   44   49   54 
LCS_GDT     A      83     A      83      4    6   29     3    3    5    5    7   12   14   17   19   20   22   24   26   27   28   28   30   35   43   44 
LCS_GDT     R      84     R      84      4    6   29     3    3    5    5    7   12   14   17   19   20   22   24   26   27   28   29   35   40   43   48 
LCS_GDT     P      85     P      85      4    6   29     3    3    5    5    7   12   14   17   19   20   22   24   26   27   32   32   35   44   46   48 
LCS_GDT     V      86     V      86      4    6   29     3    3    5    6    7   12   14   17   19   20   22   24   26   27   32   32   35   44   46   48 
LCS_GDT     E      87     E      87      4   12   29     0    3    6    9   11   12   14   17   19   20   22   24   26   27   32   35   39   44   46   53 
LCS_GDT     N      88     N      88      8   12   29     6    8    8   10   10   12   12   16   19   20   22   25   30   36   42   47   49   51   55   57 
LCS_GDT     D      89     D      89      8   12   29     5    8    9   10   12   14   17   18   20   21   25   27   30   38   42   47   49   51   55   57 
LCS_GDT     Y      90     Y      90      8   12   29     6    8    9   10   11   12   13   17   19   22   24   27   33   38   42   47   49   51   55   57 
LCS_GDT     L      91     L      91      8   12   29     6    8    9   10   11   12   13   15   19   21   25   29   33   38   42   47   49   51   55   57 
LCS_GDT     K      92     K      92      8   12   29     6    8    9   10   11   12   14   17   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     T      93     T      93      8   12   29     6    8    9   10   11   13   13   16   21   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     V      94     V      94      8   12   29     6    8    9   10   11   12   13   17   21   25   27   29   31   35   40   44   48   51   55   57 
LCS_GDT     F      95     F      95      8   12   28     4    8    9   10   11   12   13   14   19   22   25   27   30   32   35   40   42   49   52   53 
LCS_GDT     A      96     A      96      8   12   28     3    4    9   10   11   13   13   17   20   22   25   27   30   32   35   38   41   49   51   53 
LCS_GDT     D      97     D      97      5   12   28     3    4    5    7   10   13   13   17   20   22   25   27   30   32   32   35   36   38   39   46 
LCS_GDT     N      98     N      98      5   12   28     3    4    9   10   11   13   13   17   20   22   25   27   30   32   32   35   36   38   39   41 
LCS_GDT     P      99     P      99      5   11   28     3    4    5    8   11   13   13   17   20   22   25   27   30   32   32   35   36   38   39   41 
LCS_GDT     Y     100     Y     100      4    8   28     3    3    4    7   10   13   13   17   20   22   25   27   30   32   32   35   36   38   39   41 
LCS_GDT     Y     101     Y     101      4    8   28     4    4    5    7   10   13   13   17   20   22   25   27   30   32   32   35   36   38   39   46 
LCS_GDT     Q     102     Q     102      4    8   28     4    4    5    6   10   13   13   17   20   22   25   27   30   32   32   35   36   38   39   46 
LCS_GDT     H     103     H     103      4    8   28     4    4    5    6   10   13   13   17   20   22   25   27   30   32   32   35   36   38   39   41 
LCS_GDT     I     104     I     104      4    6   28     4    4    5    7    9   13   13   17   20   22   25   27   30   32   32   35   36   38   39   46 
LCS_GDT     Y     105     Y     105      3    6   28     3    3    5    6    6    8   12   14   14   17   21   24   30   32   32   35   36   38   39   40 
LCS_GDT     K     106     K     106      3    6   28     3    3    4    6    6    7   10   13   14   17   21   24   30   32   32   35   36   38   39   41 
LCS_GDT     T     112     T     112      3    6   28     3    3    5    5    7    8   11   12   17   22   25   27   30   32   32   35   36   38   39   44 
LCS_GDT     M     113     M     113      4    6   28     3    4    5    5    6    8   11   15   20   22   25   27   30   32   32   35   36   38   42   46 
LCS_GDT     Q     114     Q     114      4    6   28     3    4    5    5    7    8   11   12   15   19   24   27   30   35   42   47   49   51   55   57 
LCS_GDT     V     115     V     115      4    6   28     3    4    5    5    8   10   13   17   20   23   25   29   33   38   42   47   49   51   55   57 
LCS_GDT     F     116     F     116      4    6   28     3    6    8   10   12   15   17   19   20   25   27   29   33   38   42   47   49   51   55   57 
LCS_GDT     Q     117     Q     117      4    6   28     3    3    8   10   12   15   17   19   20   23   25   27   33   38   42   47   49   51   55   57 
LCS_GDT     I     118     I     118      3    6   28     3    3    4    5    8   10   14   17   20   23   25   27   30   32   33   39   45   49   53   56 
LCS_GDT     Y     119     Y     119      3    6   28     3    3    4    6    7   10   13   17   20   21   25   27   30   32   33   35   42   46   51   56 
LCS_GDT     A     120     A     120      3    6   28     3    3    4    5    7    8   13   17   20   21   25   27   30   32   35   39   43   46   51   56 
LCS_GDT     G     121     G     121      3   11   28     3    3    4    8   10   14   16   17   20   21   25   27   30   32   35   39   43   46   51   56 
LCS_GDT     H     122     H     122      3   11   28     3    3    4    8   10   14   16   17   20   21   23   25   30   32   35   39   43   46   51   56 
LCS_GDT     G     123     G     123      3   11   26     3    4    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     F     124     F     124      6   11   16     2    5    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     Y     125     Y     125      6   11   16     3    5    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     H     126     H     126      6   11   16     3    5    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     S     127     S     127      6   11   16     3    5    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     L     128     L     128      6   11   16     3    5    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     T     129     T     129      6   11   16     3    5    6    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     Q     130     Q     130      4   11   16     3    3    4    8   10   13   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     G     131     G     131      4   11   16     3    3    5    8   12   14   16   17   20   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     H     132     H     132      4   10   16     3    4    5    7   10   11   13   15   19   21   23   25   28   31   35   39   43   46   51   56 
LCS_GDT     K     133     K     133      4    7   16     3    4    4    6    7    8   10   11   14   17   21   25   28   31   35   39   43   46   51   56 
LCS_GDT     Y     134     Y     134      5    7   16     4    5    5    6    7    8    8   11   13   16   18   21   25   30   34   39   43   46   51   56 
LCS_GDT     I     135     I     135      5    7   16     4    5    5    6    7    8    8   11   12   15   18   20   23   25   30   32   38   44   48   53 
LCS_GDT     F     136     F     136      5    7   14     3    5    5    6    7    8   10   11   13   15   20   24   29   34   37   42   48   51   55   57 
LCS_GDT     S     137     S     137      5    7   13     4    5    5    6    7    8   10   13   17   20   25   29   33   38   42   47   49   51   55   57 
LCS_GDT     I     138     I     138      5    7   13     4    5    5   11   14   15   17   19   20   22   25   29   33   38   42   47   49   51   55   57 
LCS_GDT     G     139     G     139      5    6   13     1    3    7   11   14   15   17   19   20   22   24   27   30   35   37   47   49   51   55   57 
LCS_GDT     E     145     E     145      3    4    8     0    3    3    3    4    4    5    8    8   10   14   27   29   33   36   39   46   48   53   55 
LCS_GDT     V     146     V     146      4    4    8     3    3    4    4    4    4    5    5    7    7   10   13   16   17   19   30   35   38   42   47 
LCS_GDT     R     147     R     147      4    4    8     3    3    4    4    4    4    5    6    7    7   10   19   23   27   36   40   46   48   55   57 
LCS_GDT     A     148     A     148      4    4    8     3    3    4    4    6    9    9    9   13   18   23   27   30   38   42   47   49   51   55   57 
LCS_GDT     L     149     L     149      4    4    8     0    3    4    4    6   10   15   17   19   20   23   29   33   38   42   47   49   51   55   57 
LCS_AVERAGE  LCS_A:   9.12  (   3.51    6.11   17.73 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9      9     10     11     14     15     17     19     21     25     27     29     33     38     42     47     49     51     55     57 
GDT PERCENT_CA   6.47   6.47   7.19   7.91  10.07  10.79  12.23  13.67  15.11  17.99  19.42  20.86  23.74  27.34  30.22  33.81  35.25  36.69  39.57  41.01
GDT RMS_LOCAL    0.18   0.18   0.54   0.81   1.74   1.87   2.24   2.57   3.31   3.64   3.83   4.03   4.79   5.21   5.53   5.82   5.95   6.09   6.45   6.62
GDT RMS_ALL_CA  27.94  27.94  27.95  26.72  20.09  20.22  16.69  16.80  16.58  16.63  16.46  16.44  15.75  15.71  15.69  15.68  15.71  15.72  15.61  15.59

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         25.421
LGA    E       2      E       2         23.803
LGA    L       3      L       3         21.322
LGA    K       4      K       4         20.892
LGA    D       5      D       5         19.378
LGA    I       6      I       6         13.260
LGA    M       7      M       7         13.007
LGA    H       8      H       8         15.984
LGA    I       9      I       9         10.946
LGA    L      10      L      10          7.402
LGA    E      11      E      11         12.973
LGA    D      12      D      12         11.822
LGA    M      13      M      13          7.853
LGA    K      14      K      14          9.296
LGA    V      15      V      15          8.447
LGA    G      16      G      16         10.771
LGA    V      17      V      17         13.171
LGA    F      18      F      18         10.219
LGA    A      19      A      19         11.666
LGA    T      20      T      20         10.953
LGA    L      21      L      21         13.593
LGA    D      22      D      22         17.065
LGA    E      23      E      23         17.087
LGA    Y      24      Y      24         21.874
LGA    G      25      G      25         20.302
LGA    N      26      N      26         14.562
LGA    P      27      P      27          9.423
LGA    H      28      H      28          3.835
LGA    A      29      A      29          2.059
LGA    R      30      R      30          2.219
LGA    H      31      H      31          3.959
LGA    A      32      A      32          3.995
LGA    H      33      H      33          7.967
LGA    I      34      I      34          9.779
LGA    T      35      T      35          9.330
LGA    A      36      A      36         10.052
LGA    A      37      A      37         13.515
LGA    N      38      N      38         19.986
LGA    E      39      E      39         21.851
LGA    E      40      E      40         18.428
LGA    G      41      G      41         13.660
LGA    I      42      I      42          7.387
LGA    F      43      F      43          6.008
LGA    F      44      F      44          3.399
LGA    M      45      M      45          2.266
LGA    T      46      T      46          2.357
LGA    S      47      S      47          2.137
LGA    P      48      P      48          3.116
LGA    E      49      E      49          1.720
LGA    T      50      T      50          0.965
LGA    H      51      H      51          2.547
LGA    F      52      F      52          5.515
LGA    Y      53      Y      53          6.158
LGA    D      54      D      54          4.800
LGA    Q      55      Q      55          3.514
LGA    L      56      L      56          1.933
LGA    M      57      M      57          8.259
LGA    G      58      G      58         10.405
LGA    D      59      D      59         10.031
LGA    Q      60      Q      60          7.935
LGA    R      61      R      61          1.986
LGA    V      62      V      62          3.180
LGA    A      63      A      63          7.572
LGA    M      64      M      64          8.751
LGA    T      65      T      65         12.957
LGA    A      66      A      66         13.056
LGA    I      67      I      67         16.609
LGA    S      68      S      68         16.121
LGA    E      69      E      69         17.842
LGA    E      70      E      70         19.681
LGA    G      71      G      71         19.230
LGA    Y      72      Y      72         20.786
LGA    L      73      L      73         16.452
LGA    I      74      I      74         16.844
LGA    Q      75      Q      75         15.305
LGA    V      76      V      76         16.088
LGA    V      77      V      77         15.630
LGA    R      78      R      78         16.248
LGA    V      79      V      79         16.025
LGA    E      80      E      80         18.236
LGA    G      81      G      81         18.084
LGA    T      82      T      82         18.557
LGA    A      83      A      83         17.915
LGA    R      84      R      84         13.665
LGA    P      85      P      85         12.097
LGA    V      86      V      86         12.670
LGA    E      87      E      87         10.548
LGA    N      88      N      88          8.540
LGA    D      89      D      89          4.383
LGA    Y      90      Y      90          8.793
LGA    L      91      L      91         13.469
LGA    K      92      K      92         12.121
LGA    T      93      T      93         14.298
LGA    V      94      V      94         19.501
LGA    F      95      F      95         21.538
LGA    A      96      A      96         21.570
LGA    D      97      D      97         27.964
LGA    N      98      N      98         28.590
LGA    P      99      P      99         28.157
LGA    Y     100      Y     100         27.945
LGA    Y     101      Y     101         21.002
LGA    Q     102      Q     102         22.799
LGA    H     103      H     103         24.061
LGA    I     104      I     104         18.595
LGA    Y     105      Y     105         22.451
LGA    K     106      K     106         23.407
LGA    T     112      T     112         21.990
LGA    M     113      M     113         16.181
LGA    Q     114      Q     114          9.417
LGA    V     115      V     115          7.184
LGA    F     116      F     116          2.589
LGA    Q     117      Q     117          2.385
LGA    I     118      I     118          7.294
LGA    Y     119      Y     119         12.520
LGA    A     120      A     120         19.233
LGA    G     121      G     121         23.865
LGA    H     122      H     122         25.422
LGA    G     123      G     123         23.454
LGA    F     124      F     124         22.906
LGA    Y     125      Y     125         21.648
LGA    H     126      H     126         25.471
LGA    S     127      S     127         28.028
LGA    L     128      L     128         28.996
LGA    T     129      T     129         33.391
LGA    Q     130      Q     130         35.552
LGA    G     131      G     131         36.223
LGA    H     132      H     132         31.199
LGA    K     133      K     133         27.388
LGA    Y     134      Y     134         22.364
LGA    I     135      I     135         17.339
LGA    F     136      F     136         12.300
LGA    S     137      S     137          8.208
LGA    I     138      I     138         10.098
LGA    G     139      G     139         12.522
LGA    E     145      E     145         15.731
LGA    V     146      V     146         18.724
LGA    R     147      R     147         14.349
LGA    A     148      A     148         12.514
LGA    L     149      L     149          8.470

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  149  139    4.0     19    2.57    15.468    12.553     0.712

LGA_LOCAL      RMSD =  2.569  Number of atoms =   19  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.446  Number of atoms =  139 
Std_ALL_ATOMS  RMSD = 14.866  (standard rmsd on all 139 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.986001 * X  +   0.057624 * Y  +   0.156465 * Z  +  21.681931
  Y_new =   0.138703 * X  +   0.804248 * Y  +   0.577881 * Z  +  40.233879
  Z_new =  -0.092537 * X  +   0.591493 * Y  +  -0.800982 * Z  +  27.644119 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.505518   -0.636074  [ DEG:   143.5556    -36.4444 ]
  Theta =   0.092670    3.048923  [ DEG:     5.3096    174.6904 ]
  Phi   =   3.001837   -0.139756  [ DEG:   171.9926     -8.0074 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0331TS393_4                                  
REMARK     2: T0331.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0331TS393_4.T0331.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  149  139   4.0   19   2.57  12.553    14.87
REMARK  ---------------------------------------------------------- 
MOLECULE T0331TS393_4
PFRMAT TS
TARGET T0331
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      35.279  20.598  13.209  1.00 25.00           C
ATOM      2  CA  GLU     2      34.327  24.024  11.901  1.00 25.00           C
ATOM      3  CA  LEU     3      32.991  25.817  14.986  1.00 25.00           C
ATOM      4  CA  LYS     4      29.389  26.598  13.949  1.00 25.00           C
ATOM      5  CA  ASP     5      28.245  24.269  16.765  1.00 25.00           C
ATOM      6  CA  ILE     6      26.542  27.206  18.536  1.00 25.00           C
ATOM      7  CA  MET     7      24.776  28.178  15.280  1.00 25.00           C
ATOM      8  CA  HIS     8      23.593  24.566  14.813  1.00 25.00           C
ATOM      9  CA  ILE     9      22.268  24.510  18.406  1.00 25.00           C
ATOM     10  CA  LEU    10      20.411  27.804  17.799  1.00 25.00           C
ATOM     11  CA  GLU    11      18.881  26.378  14.591  1.00 25.00           C
ATOM     12  CA  ASP    12      17.769  23.242  16.487  1.00 25.00           C
ATOM     13  CA  MET    13      14.559  24.402  18.157  1.00 25.00           C
ATOM     14  CA  LYS    14      16.275  23.700  21.521  1.00 25.00           C
ATOM     15  CA  VAL    15      15.999  27.488  21.919  1.00 25.00           C
ATOM     16  CA  GLY    16      13.625  30.144  20.596  1.00 25.00           C
ATOM     17  CA  VAL    17      14.243  33.399  22.366  1.00 25.00           C
ATOM     18  CA  PHE    18      17.588  32.200  23.615  1.00 25.00           C
ATOM     19  CA  ALA    19      18.191  34.743  26.382  1.00 25.00           C
ATOM     20  CA  THR    20      19.647  35.379  29.839  1.00 25.00           C
ATOM     21  CA  LEU    21      20.425  35.536  33.510  1.00 25.00           C
ATOM     22  CA  ASP    22      18.827  34.029  36.668  1.00 25.00           C
ATOM     23  CA  GLU    23      21.808  35.551  38.530  1.00 25.00           C
ATOM     24  CA  TYR    24      20.135  34.602  41.863  1.00 25.00           C
ATOM     25  CA  GLY    25      22.320  31.532  41.626  1.00 25.00           C
ATOM     26  CA  ASN    26      25.712  33.192  40.831  1.00 25.00           C
ATOM     27  CA  PRO    27      29.245  34.125  39.663  1.00 25.00           C
ATOM     28  CA  HIS    28      28.953  33.792  35.943  1.00 25.00           C
ATOM     29  CA  ALA    29      28.586  32.349  32.414  1.00 25.00           C
ATOM     30  CA  ARG    30      27.740  28.914  33.881  1.00 25.00           C
ATOM     31  CA  HIS    31      25.117  30.509  36.170  1.00 25.00           C
ATOM     32  CA  ALA    32      23.590  32.350  33.178  1.00 25.00           C
ATOM     33  CA  HIS    33      23.459  29.075  31.198  1.00 25.00           C
ATOM     34  CA  ILE    34      21.747  27.332  34.148  1.00 25.00           C
ATOM     35  CA  THR    35      19.190  30.173  34.373  1.00 25.00           C
ATOM     36  CA  ALA    36      18.506  29.889  30.616  1.00 25.00           C
ATOM     37  CA  ALA    37      18.018  26.107  30.965  1.00 25.00           C
ATOM     38  CA  ASN    38      17.195  24.990  34.553  1.00 25.00           C
ATOM     39  CA  GLU    39      13.617  26.205  34.129  1.00 25.00           C
ATOM     40  CA  GLU    40      13.312  28.005  30.791  1.00 25.00           C
ATOM     41  CA  GLY    41      15.111  28.286  27.516  1.00 25.00           C
ATOM     42  CA  ILE    42      14.129  31.938  27.312  1.00 25.00           C
ATOM     43  CA  PHE    43      15.012  33.570  30.663  1.00 25.00           C
ATOM     44  CA  PHE    44      14.914  35.780  33.780  1.00 25.00           C
ATOM     45  CA  MET    45      15.551  39.568  34.172  1.00 25.00           C
ATOM     46  CA  THR    46      17.324  38.844  37.467  1.00 25.00           C
ATOM     47  CA  SER    47      17.747  39.407  41.207  1.00 25.00           C
ATOM     48  CA  PRO    48      21.446  39.828  41.879  1.00 25.00           C
ATOM     49  CA  GLU    49      23.538  40.586  44.983  1.00 25.00           C
ATOM     50  CA  THR    50      25.873  37.952  43.580  1.00 25.00           C
ATOM     51  CA  HIS    51      28.536  40.187  41.995  1.00 25.00           C
ATOM     52  CA  PHE    52      27.607  42.655  39.216  1.00 25.00           C
ATOM     53  CA  TYR    53      31.118  42.331  37.721  1.00 25.00           C
ATOM     54  CA  ASP    54      30.835  38.513  37.818  1.00 25.00           C
ATOM     55  CA  GLN    55      27.428  38.699  36.076  1.00 25.00           C
ATOM     56  CA  LEU    56      28.902  40.988  33.383  1.00 25.00           C
ATOM     57  CA  MET    57      32.341  39.288  33.054  1.00 25.00           C
ATOM     58  CA  GLY    58      34.165  35.911  33.155  1.00 25.00           C
ATOM     59  CA  ASP    59      32.724  34.563  29.891  1.00 25.00           C
ATOM     60  CA  GLN    60      29.771  36.273  28.123  1.00 25.00           C
ATOM     61  CA  ARG    61      28.863  39.887  27.359  1.00 25.00           C
ATOM     62  CA  VAL    62      25.559  38.916  25.724  1.00 25.00           C
ATOM     63  CA  ALA    63      21.785  38.914  25.738  1.00 25.00           C
ATOM     64  CA  MET    64      21.911  39.703  22.061  1.00 25.00           C
ATOM     65  CA  THR    65      18.138  40.048  22.146  1.00 25.00           C
ATOM     66  CA  ALA    66      14.805  38.687  23.267  1.00 25.00           C
ATOM     67  CA  ILE    67      11.052  37.971  22.849  1.00 25.00           C
ATOM     68  CA  SER    68      11.480  36.779  19.226  1.00 25.00           C
ATOM     69  CA  GLU    69      11.915  34.299  16.374  1.00 25.00           C
ATOM     70  CA  GLU    70      14.650  36.343  14.637  1.00 25.00           C
ATOM     71  CA  GLY    71      17.436  34.183  16.084  1.00 25.00           C
ATOM     72  CA  TYR    72      18.793  34.928  19.527  1.00 25.00           C
ATOM     73  CA  LEU    73      21.617  32.480  20.468  1.00 25.00           C
ATOM     74  CA  ILE    74      22.463  34.318  23.682  1.00 25.00           C
ATOM     75  CA  GLN    75      23.740  34.060  27.260  1.00 25.00           C
ATOM     76  CA  VAL    76      25.033  36.337  30.088  1.00 25.00           C
ATOM     77  CA  VAL    77      23.352  39.732  30.501  1.00 25.00           C
ATOM     78  CA  ARG    78      20.125  40.511  32.323  1.00 25.00           C
ATOM     79  CA  VAL    79      21.986  39.861  35.559  1.00 25.00           C
ATOM     80  CA  GLU    80      20.396  43.088  36.758  1.00 25.00           C
ATOM     81  CA  GLY    81      17.763  45.801  36.724  1.00 25.00           C
ATOM     82  CA  THR    82      15.024  47.675  38.601  1.00 25.00           C
ATOM     83  CA  ALA    83      13.915  50.841  40.337  1.00 25.00           C
ATOM     84  CA  ARG    84      12.859  52.250  36.911  1.00 25.00           C
ATOM     85  CA  PRO    85      10.657  53.558  34.117  1.00 25.00           C
ATOM     86  CA  VAL    86       8.722  56.519  35.617  1.00 25.00           C
ATOM     87  CA  GLU    87       6.566  56.665  32.436  1.00 25.00           C
ATOM     88  CA  ASN    88       9.894  57.418  30.829  1.00 25.00           C
ATOM     89  CA  ASP    89      12.857  55.497  29.347  1.00 25.00           C
ATOM     90  CA  TYR    90      14.916  58.723  29.217  1.00 25.00           C
ATOM     91  CA  LEU    91      14.042  59.458  32.872  1.00 25.00           C
ATOM     92  CA  LYS    92      15.090  55.910  33.862  1.00 25.00           C
ATOM     93  CA  THR    93      18.404  56.341  31.992  1.00 25.00           C
ATOM     94  CA  VAL    94      19.008  59.674  33.780  1.00 25.00           C
ATOM     95  CA  PHE    95      18.288  58.020  37.158  1.00 25.00           C
ATOM     96  CA  ALA    96      20.738  55.196  36.326  1.00 25.00           C
ATOM     97  CA  ASP    97      24.111  55.205  38.142  1.00 25.00           C
ATOM     98  CA  ASN    98      21.977  54.309  41.120  1.00 25.00           C
ATOM     99  CA  PRO    99      22.104  50.657  42.108  1.00 25.00           C
ATOM    100  CA  TYR   100      24.689  48.393  40.437  1.00 25.00           C
ATOM    101  CA  TYR   101      22.546  47.690  37.341  1.00 25.00           C
ATOM    102  CA  GLN   102      24.161  50.648  35.522  1.00 25.00           C
ATOM    103  CA  HIS   103      27.643  49.349  36.450  1.00 25.00           C
ATOM    104  CA  ILE   104      26.719  45.868  35.148  1.00 25.00           C
ATOM    105  CA  TYR   105      30.235  45.809  33.617  1.00 25.00           C
ATOM    106  CA  LYS   106      32.640  47.791  35.843  1.00 25.00           C
ATOM    107  CA  ASP   107      35.162  49.450  38.164  1.00 25.00           C
ATOM    108  CA  GLU   108      35.293  52.500  35.867  1.00 25.00           C
ATOM    109  CA  SER   109      37.074  50.068  33.455  1.00 25.00           C
ATOM    110  CA  SER   110      35.217  52.038  30.761  1.00 25.00           C
ATOM    111  CA  ASP   111      32.534  50.199  28.754  1.00 25.00           C
ATOM    112  CA  THR   112      29.653  47.729  29.016  1.00 25.00           C
ATOM    113  CA  MET   113      26.579  45.672  29.900  1.00 25.00           C
ATOM    114  CA  GLN   114      23.226  46.354  31.491  1.00 25.00           C
ATOM    115  CA  VAL   115      21.001  44.428  29.152  1.00 25.00           C
ATOM    116  CA  PHE   116      17.505  44.523  30.769  1.00 25.00           C
ATOM    117  CA  GLN   117      16.473  42.390  27.847  1.00 25.00           C
ATOM    118  CA  ILE   118      15.470  38.958  29.129  1.00 25.00           C
ATOM    119  CA  TYR   119      11.779  38.145  29.679  1.00 25.00           C
ATOM    120  CA  ALA   120       9.841  37.628  32.832  1.00 25.00           C
ATOM    121  CA  GLY   121       8.904  38.262  36.437  1.00 25.00           C
ATOM    122  CA  HIS   122       8.650  41.866  35.321  1.00 25.00           C
ATOM    123  CA  GLY   123      12.149  43.366  34.851  1.00 25.00           C
ATOM    124  CA  PHE   124      12.470  42.937  31.097  1.00 25.00           C
ATOM    125  CA  TYR   125      11.769  44.085  27.539  1.00 25.00           C
ATOM    126  CA  HIS   126      12.796  46.582  24.938  1.00 25.00           C
ATOM    127  CA  SER   127      11.170  48.007  21.866  1.00 25.00           C
ATOM    128  CA  LEU   128      13.595  46.748  19.222  1.00 25.00           C
ATOM    129  CA  THR   129      14.431  49.347  16.577  1.00 25.00           C
ATOM    130  CA  GLN   130      13.620  53.041  16.084  1.00 25.00           C
ATOM    131  CA  GLY   131      12.024  53.213  19.471  1.00 25.00           C
ATOM    132  CA  HIS   132      15.090  51.675  21.092  1.00 25.00           C
ATOM    133  CA  LYS   133      18.804  50.783  21.499  1.00 25.00           C
ATOM    134  CA  TYR   134      18.179  47.562  23.508  1.00 25.00           C
ATOM    135  CA  ILE   135      20.940  44.951  23.357  1.00 25.00           C
ATOM    136  CA  PHE   136      23.869  44.515  20.974  1.00 25.00           C
ATOM    137  CA  SER   137      27.028  43.649  19.101  1.00 25.00           C
ATOM    138  CA  ILE   138      29.570  45.274  16.797  1.00 25.00           C
ATOM    139  CA  GLY   139      31.807  46.955  14.223  1.00 25.00           C
ATOM    140  CA  GLN   140      33.865  45.089  11.644  1.00 25.00           C
ATOM    141  CA  GLY   141      36.130  47.492   9.777  1.00 25.00           C
ATOM    142  CA  GLU   142      35.752  48.650   6.127  1.00 25.00           C
ATOM    143  CA  HIS   143      32.260  48.539   4.625  1.00 25.00           C
ATOM    144  CA  SER   144      31.985  45.106   2.985  1.00 25.00           C
ATOM    145  CA  GLU   145      32.809  41.544   2.007  1.00 25.00           C
ATOM    146  CA  VAL   146      33.189  41.055  -1.774  1.00 25.00           C
ATOM    147  CA  ARG   147      29.474  40.503  -2.376  1.00 25.00           C
ATOM    148  CA  ALA   148      27.483  37.963  -0.381  1.00 25.00           C
ATOM    149  CA  LEU   149      26.213  34.467   0.525  1.00 25.00           C
TER
END
