
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  113 (  113),  selected  113 , name T0338TS168_2-D2
# Molecule2: number of CA atoms  113 (  914),  selected  113 , name T0338_D2.pdb
# PARAMETERS: T0338TS168_2-D2.T0338_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51       144 - 194         4.92     8.65
  LCS_AVERAGE:     41.72

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       224 - 251         1.99     9.13
  LCS_AVERAGE:     16.95

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       159 - 178         0.80    18.86
  LONGEST_CONTINUOUS_SEGMENT:    20       224 - 243         0.90    13.07
  LCS_AVERAGE:     12.90

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  113
LCS_GDT     E     144     E     144     16   17   51     4    8   15   19   22   33   42   56   61   69   74   78   81   84   88   89   91   93   95   97 
LCS_GDT     H     145     H     145     16   17   51     3    4   15   19   22   34   45   56   67   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     P     146     P     146     16   17   51     3   10   15   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     H     147     H     147     16   17   51     8   13   15   19   32   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     148     T     148     16   17   51     8   13   15   19   25   38   51   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     D     149     D     149     16   17   51     8   13   15   21   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     V     150     V     150     16   17   51     8   13   15   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     V     151     V     151     16   17   51     8   13   15   19   26   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     K     152     K     152     16   17   51     8   13   15   23   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     C     153     C     153     16   17   51     8   13   15   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     154     T     154     16   17   51     7   13   15   19   22   40   54   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     Q     155     Q     155     16   17   51     6   13   15   19   26   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     156     L     156     16   17   51     8   13   15   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     V     157     V     157     16   22   51     4   13   15   20   29   35   48   58   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     R     158     R     158     16   22   51     3   13   15   19   22   28   38   53   67   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     A     159     A     159     20   22   51     6   13   19   19   22   24   31   38   49   70   76   78   81   84   88   89   91   93   95   97 
LCS_GDT     S     160     S     160     20   22   51     7   18   19   19   26   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     K     161     K     161     20   22   51    12   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     D     162     D     162     20   22   51    12   18   19   19   21   31   51   58   66   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     163     L     163     20   22   51    12   18   19   19   21   38   51   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     A     164     A     164     20   22   51    12   18   19   25   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     Q     165     Q     165     20   22   51    12   18   19   23   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     166     T     166     20   22   51    12   18   19   19   23   39   52   60   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     S     167     S     167     20   22   51    12   18   19   19   25   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     Y     168     Y     168     20   22   51    12   18   19   22   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     F     169     F     169     20   22   51    12   18   19   19   30   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     M     170     M     170     20   22   51    12   18   19   19   26   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     A     171     A     171     20   22   51    12   18   19   22   31   42   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     172     T     172     20   22   51    12   18   19   19   31   45   54   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     N     173     N     173     20   22   51    12   18   19   19   32   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     S     174     S     174     20   22   51    12   18   19   19   24   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     175     L     175     20   22   51     6   18   19   20   31   41   53   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     H     176     H     176     20   22   51     7   18   19   19   34   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     177     L     177     20   22   51     7   18   19   19   25   40   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     178     T     178     20   22   51     3    3    6   14   21   21   33   56   64   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     179     T     179      3   22   51     3    3    3   23   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     F     180     F     180      6    7   51     4   10   11   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     C     181     C     181      6    7   51     4   12   15   25   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     182     L     182      6    7   51     4    5   12   19   26   32   48   60   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     Q     183     Q     183      6   20   51     4    5    6    6   25   31   48   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     Y     184     Y     184     18   20   51     3    6   17   18   18   20   24   28   35   48   73   78   81   84   88   89   91   93   95   97 
LCS_GDT     K     185     K     185     18   20   51     3    7   17   18   19   20   23   25   27   30   32   35   42   48   53   61   78   90   95   97 
LCS_GDT     P     186     P     186     18   20   51    16   16   17   18   19   20   23   25   27   30   32   35   36   42   56   65   77   88   95   97 
LCS_GDT     T     187     T     187     18   20   51    16   16   17   18   19   20   23   25   26   29   35   51   62   75   81   85   89   93   95   97 
LCS_GDT     V     188     V     188     18   20   51    16   16   17   18   19   20   23   27   32   56   68   78   81   84   88   89   91   93   95   97 
LCS_GDT     I     189     I     189     18   20   51    16   16   17   19   31   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     A     190     A     190     18   20   51    16   16   17   19   26   40   50   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     C     191     C     191     18   20   51    16   16   17   22   31   42   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     V     192     V     192     18   20   51    16   16   17   18   19   22   37   51   63   71   77   78   80   84   88   89   91   93   95   97 
LCS_GDT     C     193     C     193     18   20   51    16   16   17   18   19   20   23   25   27   30   36   46   67   80   85   88   91   93   95   97 
LCS_GDT     I     194     I     194     18   20   51    16   16   17   18   19   20   23   25   28   45   57   76   80   82   86   88   91   93   95   97 
LCS_GDT     H     195     H     195     18   20   41    16   16   17   18   19   20   23   25   27   31   33   37   54   55   66   77   82   85   86   87 
LCS_GDT     L     196     L     196     18   20   41    16   16   17   18   19   20   23   25   27   30   32   35   35   38   44   48   51   55   64   72 
LCS_GDT     A     197     A     197     18   20   41    16   16   17   18   19   20   23   25   27   30   32   35   35   37   39   42   51   54   57   59 
LCS_GDT     C     198     C     198     18   20   41    16   16   17   18   19   20   23   25   27   30   32   35   35   37   41   46   51   54   57   66 
LCS_GDT     K     199     K     199     18   20   41    16   16   17   18   19   20   23   25   27   30   32   35   35   37   39   41   46   52   53   56 
LCS_GDT     W     200     W     200     18   20   41    16   16   17   18   19   20   23   25   27   30   32   35   35   37   39   41   41   46   53   55 
LCS_GDT     S     201     S     201     18   20   41    16   16   17   18   19   20   23   25   27   30   32   35   35   37   39   41   41   46   53   55 
LCS_GDT     N     202     N     202      5   20   41     3    5    5    9   13   20   23   25   27   30   32   35   35   37   41   46   51   54   57   59 
LCS_GDT     W     203     W     203      5   20   41     3    5    6    9   13   20   23   25   27   30   32   36   40   44   49   54   66   79   80   85 
LCS_GDT     E     204     E     204      5    7   41     3    5    6    9   13   20   23   25   30   37   45   54   62   73   79   82   84   86   86   90 
LCS_GDT     I     205     I     205      5    7   41     3    5    7    9   20   36   50   58   66   72   77   78   80   84   88   89   91   93   95   97 
LCS_GDT     P     206     P     206      5    7   41     3    6   13   22   33   42   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     V     207     V     207      4    5   41     3    4    8   16   33   42   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     S     208     S     208      4    5   41     3    4    9   16   25   39   48   61   67   71   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     209     T     209      3    6   41     1    3   14   19   22   24   34   48   56   63   71   78   81   84   88   89   91   93   95   97 
LCS_GDT     D     210     D     210      4    6   41     3   10   15   19   22   23   27   31   35   49   58   68   73   78   84   88   91   93   95   97 
LCS_GDT     G     211     G     211      4    6   45     3    4    4    5   22   23   28   33   40   56   63   68   79   83   88   89   91   93   95   97 
LCS_GDT     K     212     K     212      4    6   45     3    4    4    5    8    9   22   27   35   45   57   68   74   79   85   89   91   93   95   97 
LCS_GDT     H     213     H     213      4    6   45     3    4    4    5   12   18   34   44   52   62   68   78   81   83   88   89   91   93   95   97 
LCS_GDT     W     214     W     214      4    6   45     4    4    5   13   25   34   44   52   59   67   74   78   81   84   88   89   91   93   95   97 
LCS_GDT     W     215     W     215      4    5   45     4    4    4    4    4   22   25   45   52   64   74   78   81   84   88   89   91   93   95   97 
LCS_GDT     E     216     E     216      4    5   45     4    4    5   20   25   34   44   52   59   69   74   78   81   84   88   89   91   93   95   97 
LCS_GDT     Y     217     Y     217      4    5   45     4    4    4    4    8   11   14   17   29   39   46   53   59   71   77   82   89   92   95   97 
LCS_GDT     V     218     V     218      5    6   45     3    3    5    5    7    9   12   20   23   26   29   35   37   41   48   55   62   68   76   88 
LCS_GDT     D     219     D     219      5    6   45     3    4    5    5    8   15   18   20   23   24   27   30   32   38   44   63   68   74   83   88 
LCS_GDT     P     220     P     220      5    6   45     3    4    5    5    8   12   18   20   22   24   27   29   32   38   48   63   69   76   84   94 
LCS_GDT     T     221     T     221      5    6   45     3    4    5    5    8   11   15   19   30   40   47   59   70   79   85   88   90   93   95   97 
LCS_GDT     V     222     V     222      5    6   45     0    4    5    5    7    8   14   20   25   50   64   69   76   83   88   89   91   93   95   97 
LCS_GDT     T     223     T     223      4   24   45     3    3    8   12   17   24   37   49   57   66   74   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     224     L     224     20   28   45    17   18   19   23   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     E     225     E     225     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     226     L     226     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     227     L     227     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     D     228     D     228     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     E     229     E     229     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     230     L     230     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     231     T     231     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     H     232     H     232     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     E     233     E     233     20   28   45    17   18   19   24   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     F     234     F     234     20   28   45    17   18   19   25   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     235     L     235     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     Q     236     Q     236     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     I     237     I     237     20   28   45    17   18   19   21   34   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     238     L     238     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     E     239     E     239     20   28   45    17   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     K     240     K     240     20   28   45    17   18   19   21   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     T     241     T     241     20   28   45     3   11   14   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     P     242     P     242     20   28   45    13   18   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     N     243     N     243     20   28   45    13   16   19   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     R     244     R     244     15   28   45    13   13   14   22   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     L     245     L     245     15   28   45    13   13   14   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     K     246     K     246     15   28   45    13   13   16   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     K     247     K     247     15   28   45    13   13   14   20   34   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     I     248     I     248     15   28   45    13   13   14   20   30   43   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     R     249     R     249     15   28   45    13   13   14   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     N     250     N     250     15   28   45    13   13   14   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     W     251     W     251     15   28   45    13   13   14   20   30   38   50   61   67   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     R     252     R     252     15   25   45    13   13   14   20   30   41   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     A     253     A     253     15   25   45    13   13   14   26   35   45   56   61   68   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     N     254     N     254      3   16   45     3    3    4    8   14   25   39   50   61   70   75   77   80   82   88   89   91   93   95   97 
LCS_GDT     Q     255     Q     255      3    5   45     3    3    3    8   14   36   49   59   66   72   77   78   81   84   88   89   91   93   95   97 
LCS_GDT     A     256     A     256      3    5   45     0    3    3    5    8    8    9   15   22   28   68   72   80   84   88   89   91   93   95   97 
LCS_AVERAGE  LCS_A:  23.85  (  12.90   16.95   41.72 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     18     19     26     35     45     56     61     68     72     77     78     81     84     88     89     91     93     95     97 
GDT PERCENT_CA  15.04  15.93  16.81  23.01  30.97  39.82  49.56  53.98  60.18  63.72  68.14  69.03  71.68  74.34  77.88  78.76  80.53  82.30  84.07  85.84
GDT RMS_LOCAL    0.30   0.39   0.60   1.66   1.84   2.11   2.49   2.63   2.91   3.05   3.29   3.35   3.65   3.79   4.03   4.11   4.28   4.45   4.75   4.88
GDT RMS_ALL_CA  13.93  13.73  19.12   8.75   8.72   8.73   8.66   8.67   8.62   8.61   8.63   8.63   8.57   8.56   8.58   8.58   8.59   8.56   8.61   8.62

#      Molecule1      Molecule2       DISTANCE
LGA    E     144      E     144          7.709
LGA    H     145      H     145          6.214
LGA    P     146      P     146          1.344
LGA    H     147      H     147          3.503
LGA    T     148      T     148          4.847
LGA    D     149      D     149          3.230
LGA    V     150      V     150          1.556
LGA    V     151      V     151          3.508
LGA    K     152      K     152          2.961
LGA    C     153      C     153          2.113
LGA    T     154      T     154          3.905
LGA    Q     155      Q     155          3.579
LGA    L     156      L     156          1.426
LGA    V     157      V     157          5.219
LGA    R     158      R     158          6.093
LGA    A     159      A     159          6.873
LGA    S     160      S     160          3.544
LGA    K     161      K     161          1.990
LGA    D     162      D     162          5.123
LGA    L     163      L     163          4.578
LGA    A     164      A     164          1.693
LGA    Q     165      Q     165          3.198
LGA    T     166      T     166          4.343
LGA    S     167      S     167          3.322
LGA    Y     168      Y     168          2.883
LGA    F     169      F     169          3.546
LGA    M     170      M     170          3.402
LGA    A     171      A     171          3.258
LGA    T     172      T     172          3.559
LGA    N     173      N     173          2.898
LGA    S     174      S     174          3.354
LGA    L     175      L     175          3.854
LGA    H     176      H     176          2.716
LGA    L     177      L     177          3.674
LGA    T     178      T     178          4.774
LGA    T     179      T     179          1.951
LGA    F     180      F     180          1.636
LGA    C     181      C     181          2.288
LGA    L     182      L     182          4.999
LGA    Q     183      Q     183          4.881
LGA    Y     184      Y     184          6.896
LGA    K     185      K     185         11.979
LGA    P     186      P     186         12.601
LGA    T     187      T     187         10.599
LGA    V     188      V     188          6.695
LGA    I     189      I     189          3.571
LGA    A     190      A     190          4.606
LGA    C     191      C     191          2.863
LGA    V     192      V     192          6.144
LGA    C     193      C     193          9.184
LGA    I     194      I     194          8.550
LGA    H     195      H     195         12.792
LGA    L     196      L     196         16.721
LGA    A     197      A     197         18.022
LGA    C     198      C     198         18.947
LGA    K     199      K     199         23.987
LGA    W     200      W     200         26.955
LGA    S     201      S     201         27.344
LGA    N     202      N     202         23.735
LGA    W     203      W     203         17.165
LGA    E     204      E     204         12.957
LGA    I     205      I     205          5.647
LGA    P     206      P     206          2.368
LGA    V     207      V     207          3.116
LGA    S     208      S     208          5.763
LGA    T     209      T     209          9.428
LGA    D     210      D     210         13.609
LGA    G     211      G     211         11.052
LGA    K     212      K     212         13.796
LGA    H     213      H     213         10.333
LGA    W     214      W     214          8.013
LGA    W     215      W     215          8.526
LGA    E     216      E     216          8.241
LGA    Y     217      Y     217         14.834
LGA    V     218      V     218         18.487
LGA    D     219      D     219         18.194
LGA    P     220      P     220         19.513
LGA    T     221      T     221         14.919
LGA    V     222      V     222         10.540
LGA    T     223      T     223          7.899
LGA    L     224      L     224          2.997
LGA    E     225      E     225          2.377
LGA    L     226      L     226          0.640
LGA    L     227      L     227          1.755
LGA    D     228      D     228          2.489
LGA    E     229      E     229          1.962
LGA    L     230      L     230          1.604
LGA    T     231      T     231          2.083
LGA    H     232      H     232          2.328
LGA    E     233      E     233          2.111
LGA    F     234      F     234          1.917
LGA    L     235      L     235          1.974
LGA    Q     236      Q     236          2.191
LGA    I     237      I     237          2.384
LGA    L     238      L     238          1.801
LGA    E     239      E     239          1.787
LGA    K     240      K     240          2.553
LGA    T     241      T     241          1.914
LGA    P     242      P     242          0.729
LGA    N     243      N     243          2.190
LGA    R     244      R     244          2.687
LGA    L     245      L     245          1.457
LGA    K     246      K     246          1.067
LGA    K     247      K     247          3.307
LGA    I     248      I     248          3.363
LGA    R     249      R     249          1.211
LGA    N     250      N     250          2.406
LGA    W     251      W     251          4.289
LGA    R     252      R     252          3.362
LGA    A     253      A     253          1.545
LGA    N     254      N     254          6.516
LGA    Q     255      Q     255          4.778
LGA    A     256      A     256          7.326

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  113  113    4.0     61    2.63    42.920    38.719     2.237

LGA_LOCAL      RMSD =  2.627  Number of atoms =   61  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  8.667  Number of atoms =  113 
Std_ALL_ATOMS  RMSD =  8.447  (standard rmsd on all 113 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.826531 * X  +   0.424646 * Y  +   0.369489 * Z  + -26.920673
  Y_new =  -0.545196 * X  +  -0.440639 * Y  +  -0.713161 * Z  +  22.849258
  Z_new =  -0.140029 * X  +  -0.790894 * Y  +   0.595717 * Z  +  65.618782 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.925237    2.216356  [ DEG:   -53.0122    126.9878 ]
  Theta =   0.140491    3.001101  [ DEG:     8.0495    171.9505 ]
  Phi   =  -2.558485    0.583108  [ DEG:  -146.5904     33.4096 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS168_2-D2                               
REMARK     2: T0338_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS168_2-D2.T0338_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  113  113   4.0   61   2.63  38.719     8.45
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS168_2-D2
PFRMAT TS
TARGET T0338
MODEL 2
PARENT N/A
ATOM    144  CA  GLU   144     -27.571  10.516  59.373  1.00 25.00           C
ATOM    145  CA  HIS   145     -27.387  12.831  62.429  1.00 25.00           C
ATOM    146  CA  PRO   146     -25.677  15.367  64.691  1.00 25.00           C
ATOM    147  CA  HIS   147     -29.157  16.777  65.453  1.00 25.00           C
ATOM    148  CA  THR   148     -31.778  13.997  65.191  1.00 25.00           C
ATOM    149  CA  ASP   149     -30.608  12.545  68.536  1.00 25.00           C
ATOM    150  CA  VAL   150     -30.849  16.008  70.152  1.00 25.00           C
ATOM    151  CA  VAL   151     -34.392  16.436  68.762  1.00 25.00           C
ATOM    152  CA  LYS   152     -35.376  13.003  70.144  1.00 25.00           C
ATOM    153  CA  CYS   153     -33.947  13.946  73.571  1.00 25.00           C
ATOM    154  CA  THR   154     -35.916  17.230  73.515  1.00 25.00           C
ATOM    155  CA  GLN   155     -39.117  15.326  72.625  1.00 25.00           C
ATOM    156  CA  LEU   156     -38.493  12.881  75.507  1.00 25.00           C
ATOM    157  CA  VAL   157     -38.359  15.802  77.949  1.00 25.00           C
ATOM    158  CA  ARG   158     -40.256  19.066  77.995  1.00 25.00           C
ATOM    159  CA  ALA   159     -36.887  20.641  76.989  1.00 25.00           C
ATOM    160  CA  SER   160     -34.780  19.530  79.947  1.00 25.00           C
ATOM    161  CA  LYS   161     -31.392  19.876  81.651  1.00 25.00           C
ATOM    162  CA  ASP   162     -29.741  16.658  80.395  1.00 25.00           C
ATOM    163  CA  LEU   163     -30.890  17.434  76.825  1.00 25.00           C
ATOM    164  CA  ALA   164     -29.467  20.977  77.110  1.00 25.00           C
ATOM    165  CA  GLN   165     -26.137  19.565  78.372  1.00 25.00           C
ATOM    166  CA  THR   166     -26.042  17.106  75.437  1.00 25.00           C
ATOM    167  CA  SER   167     -26.728  19.967  72.985  1.00 25.00           C
ATOM    168  CA  TYR   168     -23.910  22.026  74.561  1.00 25.00           C
ATOM    169  CA  PHE   169     -21.527  19.045  74.254  1.00 25.00           C
ATOM    170  CA  MET   170     -22.497  18.616  70.575  1.00 25.00           C
ATOM    171  CA  ALA   171     -21.869  22.341  69.948  1.00 25.00           C
ATOM    172  CA  THR   172     -18.441  22.071  71.635  1.00 25.00           C
ATOM    173  CA  ASN   173     -17.584  19.034  69.465  1.00 25.00           C
ATOM    174  CA  SER   174     -18.635  20.953  66.322  1.00 25.00           C
ATOM    175  CA  LEU   175     -16.451  23.918  67.373  1.00 25.00           C
ATOM    176  CA  HIS   176     -13.484  21.563  67.941  1.00 25.00           C
ATOM    177  CA  LEU   177     -13.745  18.944  65.126  1.00 25.00           C
ATOM    178  CA  THR   178     -13.246  18.844  61.349  1.00 25.00           C
ATOM    179  CA  THR   179     -11.150  15.725  61.817  1.00 25.00           C
ATOM    180  CA  PHE   180     -14.421  13.945  62.527  1.00 25.00           C
ATOM    181  CA  CYS   181     -17.425  16.224  62.917  1.00 25.00           C
ATOM    182  CA  LEU   182     -19.533  13.590  61.209  1.00 25.00           C
ATOM    183  CA  GLN   183     -18.033  11.279  63.845  1.00 25.00           C
ATOM    184  CA  TYR   184     -17.427  13.709  66.672  1.00 25.00           C
ATOM    185  CA  LYS   185     -17.284  13.646  70.521  1.00 25.00           C
ATOM    186  CA  PRO   186     -19.045  12.640  73.723  1.00 25.00           C
ATOM    187  CA  THR   187     -22.219  14.684  73.078  1.00 25.00           C
ATOM    188  CA  VAL   188     -21.704  14.335  69.298  1.00 25.00           C
ATOM    189  CA  ILE   189     -21.252  10.551  69.686  1.00 25.00           C
ATOM    190  CA  ALA   190     -24.466  10.354  71.758  1.00 25.00           C
ATOM    191  CA  CYS   191     -26.344  12.345  69.080  1.00 25.00           C
ATOM    192  CA  VAL   192     -25.020   9.990  66.366  1.00 25.00           C
ATOM    193  CA  CYS   193     -26.143   6.956  68.415  1.00 25.00           C
ATOM    194  CA  ILE   194     -29.621   8.504  68.845  1.00 25.00           C
ATOM    195  CA  HIS   195     -29.832   9.139  65.075  1.00 25.00           C
ATOM    196  CA  LEU   196     -28.825   5.510  64.382  1.00 25.00           C
ATOM    197  CA  ALA   197     -31.505   4.274  66.821  1.00 25.00           C
ATOM    198  CA  CYS   198     -34.124   6.472  65.095  1.00 25.00           C
ATOM    199  CA  LYS   199     -33.076   5.084  61.683  1.00 25.00           C
ATOM    200  CA  TRP   200     -33.364   1.508  63.023  1.00 25.00           C
ATOM    201  CA  SER   201     -36.854   2.277  64.398  1.00 25.00           C
ATOM    202  CA  ASN   202     -37.174   3.068  68.143  1.00 25.00           C
ATOM    203  CA  TRP   203     -35.461   2.840  71.578  1.00 25.00           C
ATOM    204  CA  GLU   204     -37.558   4.389  74.303  1.00 25.00           C
ATOM    205  CA  ILE   205     -34.528   6.013  75.992  1.00 25.00           C
ATOM    206  CA  PRO   206     -34.848   5.677  79.735  1.00 25.00           C
ATOM    207  CA  VAL   207     -36.527   2.284  79.810  1.00 25.00           C
ATOM    208  CA  SER   208     -39.804   3.322  81.477  1.00 25.00           C
ATOM    209  CA  THR   209     -38.697   3.504  85.146  1.00 25.00           C
ATOM    210  CA  ASP   210     -35.174   2.511  86.271  1.00 25.00           C
ATOM    211  CA  GLY   211     -32.063   3.618  84.374  1.00 25.00           C
ATOM    212  CA  LYS   212     -29.349   1.840  86.388  1.00 25.00           C
ATOM    213  CA  HIS   213     -26.610   3.154  84.005  1.00 25.00           C
ATOM    214  CA  TRP   214     -26.737   4.034  80.290  1.00 25.00           C
ATOM    215  CA  TRP   215     -29.484   1.814  78.808  1.00 25.00           C
ATOM    216  CA  GLU   216     -27.061   0.574  76.114  1.00 25.00           C
ATOM    217  CA  TYR   217     -24.442  -0.212  78.796  1.00 25.00           C
ATOM    218  CA  VAL   218     -20.916  -0.048  80.263  1.00 25.00           C
ATOM    219  CA  ASP   219     -20.374  -3.240  78.268  1.00 25.00           C
ATOM    220  CA  PRO   220     -20.375  -7.013  78.754  1.00 25.00           C
ATOM    221  CA  THR   221     -21.542  -7.271  75.174  1.00 25.00           C
ATOM    222  CA  VAL   222     -20.785  -5.633  71.875  1.00 25.00           C
ATOM    223  CA  THR   223     -17.951  -3.842  73.773  1.00 25.00           C
ATOM    224  CA  LEU   224     -19.766  -0.629  73.047  1.00 25.00           C
ATOM    225  CA  GLU   225     -17.100  -0.057  70.357  1.00 25.00           C
ATOM    226  CA  LEU   226     -18.891   3.134  69.226  1.00 25.00           C
ATOM    227  CA  LEU   227     -19.033   4.368  72.849  1.00 25.00           C
ATOM    228  CA  ASP   228     -15.291   3.662  73.261  1.00 25.00           C
ATOM    229  CA  GLU   229     -14.547   5.587  70.035  1.00 25.00           C
ATOM    230  CA  LEU   230     -16.646   8.538  71.283  1.00 25.00           C
ATOM    231  CA  THR   231     -14.759   8.502  74.615  1.00 25.00           C
ATOM    232  CA  HIS   232     -11.414   8.477  72.750  1.00 25.00           C
ATOM    233  CA  GLU   233     -12.561  11.435  70.605  1.00 25.00           C
ATOM    234  CA  PHE   234     -13.605  13.346  73.755  1.00 25.00           C
ATOM    235  CA  LEU   235     -10.194  12.638  75.345  1.00 25.00           C
ATOM    236  CA  GLN   236      -8.432  13.887  72.182  1.00 25.00           C
ATOM    237  CA  ILE   237     -10.554  17.075  72.230  1.00 25.00           C
ATOM    238  CA  LEU   238      -9.677  17.632  75.916  1.00 25.00           C
ATOM    239  CA  GLU   239      -5.959  17.164  75.128  1.00 25.00           C
ATOM    240  CA  LYS   240      -6.225  19.683  72.255  1.00 25.00           C
ATOM    241  CA  THR   241      -4.898  23.184  72.903  1.00 25.00           C
ATOM    242  CA  PRO   242      -5.923  22.782  76.560  1.00 25.00           C
ATOM    243  CA  ASN   243      -5.605  26.295  78.055  1.00 25.00           C
ATOM    244  CA  ARG   244      -8.851  27.353  76.320  1.00 25.00           C
ATOM    245  CA  LEU   245     -10.625  24.249  77.690  1.00 25.00           C
ATOM    246  CA  LYS   246      -9.347  25.042  81.212  1.00 25.00           C
ATOM    247  CA  LYS   247     -10.601  28.645  80.882  1.00 25.00           C
ATOM    248  CA  ILE   248     -14.027  27.374  79.738  1.00 25.00           C
ATOM    249  CA  ARG   249     -14.167  24.986  82.729  1.00 25.00           C
ATOM    250  CA  ASN   250     -13.275  27.861  85.097  1.00 25.00           C
ATOM    251  CA  TRP   251     -16.029  30.025  83.547  1.00 25.00           C
ATOM    252  CA  ARG   252     -18.548  27.173  83.979  1.00 25.00           C
ATOM    253  CA  ALA   253     -17.504  26.774  87.643  1.00 25.00           C
ATOM    254  CA  ASN   254     -17.125  23.086  87.181  1.00 25.00           C
ATOM    255  CA  GLN   255     -20.305  22.452  85.240  1.00 25.00           C
ATOM    256  CA  ALA   256     -21.161  22.422  81.501  1.00 25.00           C
TER
END
