
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  113 (  113),  selected  113 , name T0338TS168_4-D2
# Molecule2: number of CA atoms  113 (  914),  selected  113 , name T0338_D2.pdb
# PARAMETERS: T0338TS168_4-D2.T0338_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   113       144 - 256         4.66     4.66
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23       185 - 207         1.90     6.26
  LONGEST_CONTINUOUS_SEGMENT:    23       233 - 255         1.85     8.75
  LCS_AVERAGE:     15.97

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       185 - 203         0.62     7.72
  LCS_AVERAGE:     11.33

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  113
LCS_GDT     E     144     E     144      4   17  113     3    3    5   22   32   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     H     145     H     145      4   17  113     3    6   15   20   34   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     P     146     P     146     12   17  113     3    4   12   21   27   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     H     147     H     147     13   17  113    10   12   15   24   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     148     T     148     13   17  113     8   12   15   24   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     D     149     D     149     13   17  113    10   12   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     V     150     V     150     13   17  113    10   12   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     V     151     V     151     13   17  113    10   12   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     152     K     152     13   17  113    10   12   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     C     153     C     153     13   17  113    10   12   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     154     T     154     13   17  113    10   17   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     Q     155     Q     155     13   17  113    10   11   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     156     L     156     13   17  113    10   12   15   20   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     V     157     V     157     13   17  113    10   12   15   20   32   45   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     R     158     R     158     13   17  113     3   12   15   20   26   38   47   65   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     A     159     A     159     13   19  113     3   12   18   20   26   44   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     S     160     S     160     17   19  113     3    6   15   20   26   33   45   64   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     161     K     161     17   19  113     9   16   16   17   17   26   38   51   60   76   86   95  100  103  106  109  110  112  112  113 
LCS_GDT     D     162     D     162     17   19  113    12   16   16   17   17   18   22   45   64   80   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     163     L     163     17   19  113    13   16   16   17   23   38   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     A     164     A     164     17   19  113    13   16   16   17   17   28   42   53   75   82   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     Q     165     Q     165     17   19  113    13   16   16   17   17   24   33   50   60   79   88   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     166     T     166     17   19  113    13   16   16   17   17   21   36   59   72   81   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     S     167     S     167     17   19  113    13   16   16   18   23   32   52   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     Y     168     Y     168     17   19  113    13   16   16   17   17   26   41   64   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     F     169     F     169     17   19  113    13   16   16   17   20   26   30   45   66   80   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     M     170     M     170     17   19  113    13   16   16   17   17   21   31   45   62   80   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     A     171     A     171     17   19  113    13   16   16   18   23   32   52   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     172     T     172     17   19  113    13   16   16   17   18   28   48   64   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     N     173     N     173     17   19  113    13   16   16   17   20   26   30   43   59   71   82   95  100  103  106  109  110  112  112  113 
LCS_GDT     S     174     S     174     17   19  113    13   16   16   17   20   25   31   40   56   71   79   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     175     L     175     17   19  113    11   16   16   17   26   43   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     H     176     H     176     17   19  113    13   16   16   18   22   27   36   51   66   80   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     177     L     177      4   19  113     3    3    9   20   26   36   52   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     178     T     178      4    7  113     4    4    5   11   23   38   53   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     179     T     179      4    7  113     4    5   12   17   31   45   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     F     180     F     180      4    7  113     4    4   15   20   26   38   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     C     181     C     181      4    7  113     4    4    5    6   14   41   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     182     L     182      3    5  113     3    3    7   12   20   28   50   60   72   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     Q     183     Q     183      3    5  113     3    3    4    9   14   21   30   43   58   74   84   94  100  103  106  109  110  112  112  113 
LCS_GDT     Y     184     Y     184      3   21  113     3    3    4    8   14   25   37   56   68   77   88   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     185     K     185     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     P     186     P     186     19   23  113    17   18   19   24   35   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     187     T     187     19   23  113    17   18   19   24   31   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     V     188     V     188     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     I     189     I     189     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     A     190     A     190     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     C     191     C     191     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     V     192     V     192     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     C     193     C     193     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     I     194     I     194     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     H     195     H     195     19   23  113    17   18   19   24   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     196     L     196     19   23  113    17   18   19   24   35   46   54   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     A     197     A     197     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     C     198     C     198     19   23  113    17   18   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     199     K     199     19   23  113    17   18   19   24   33   45   54   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     W     200     W     200     19   23  113    17   18   19   24   33   45   54   64   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     S     201     S     201     19   23  113    17   18   19   24   36   46   54   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     N     202     N     202     19   23  113    13   18   19   22   29   40   52   64   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     W     203     W     203     19   23  113     3    5   19   24   33   45   54   64   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     E     204     E     204      5   23  113     3    8   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     I     205     I     205      5   23  113     3    5    9   20   30   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     P     206     P     206      5   23  113     3    4    7   16   30   39   52   63   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     V     207     V     207      4   23  113     3   11   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     S     208     S     208      4    7  113     4   11   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     209     T     209      4    7  113     3    3    4    6   24   37   54   65   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     D     210     D     210      4    7  113     3    3    4   22   24   37   54   65   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     G     211     G     211      3    7  113     3    7   12   18   21   27   34   53   63   79   86   94  100  103  105  109  110  112  112  113 
LCS_GDT     K     212     K     212      4    6  113     3    3    6    7   11   17   37   56   72   82   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     H     213     H     213      4    6  113     3    3    6    7    9    9   13   27   31   39   71   84  100  103  106  109  110  112  112  113 
LCS_GDT     W     214     W     214      4    6  113     4    4    6    9   13   20   35   57   72   80   89   95  100  103  106  109  110  112  112  113 
LCS_GDT     W     215     W     215      4    4  113     4    4    6    7    9    9   13   15   31   38   45   67  100  103  106  109  110  112  112  113 
LCS_GDT     E     216     E     216      4    4  113     4    4    4    5   25   40   51   64   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     Y     217     Y     217      4    5  113     4    4    5   17   20   22   37   54   69   78   87   94  100  103  106  109  110  112  112  113 
LCS_GDT     V     218     V     218      3    5  113     3    4    4    6   12   17   22   26   34   45   62   78   89  100  103  106  109  112  112  113 
LCS_GDT     D     219     D     219      3    5  113     3    3    4    6   10   12   17   19   22   28   34   44   54   63   78   96  108  111  112  113 
LCS_GDT     P     220     P     220      3    5  113     3    3    5    9   13   17   22   28   47   68   80   94   97  101  106  109  110  112  112  113 
LCS_GDT     T     221     T     221      3    5  113     3    3    5    8   10   14   18   22   37   54   80   94   97  102  106  109  110  112  112  113 
LCS_GDT     V     222     V     222      3    5  113     0    4    5    8    9   14   18   22   34   52   68   91   97  101  106  109  110  112  112  113 
LCS_GDT     T     223     T     223      3   19  113     3    4    5    9   15   22   38   55   71   78   88   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     224     L     224     17   20  113    17   17   19   20   24   39   50   63   71   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     E     225     E     225     17   20  113    17   17   19   20   27   41   50   61   71   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     226     L     226     17   20  113    17   17   19   20   30   41   55   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     227     L     227     17   20  113    17   17   19   20   30   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     D     228     D     228     17   20  113    17   17   19   20   30   41   55   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     E     229     E     229     17   20  113    17   17   19   20   30   41   55   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     230     L     230     17   20  113    17   17   19   24   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     231     T     231     17   20  113    17   17   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     H     232     H     232     17   22  113    17   17   19   20   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     E     233     E     233     17   23  113    17   17   19   20   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     F     234     F     234     17   23  113    17   17   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     235     L     235     17   23  113    17   17   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     Q     236     Q     236     17   23  113    17   17   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     I     237     I     237     17   23  113    17   17   19   20   32   43   54   64   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     238     L     238     17   23  113    17   17   19   24   33   45   54   64   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     E     239     E     239     17   23  113    17   17   19   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     240     K     240     17   23  113    17   17   19   20   32   43   54   64   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     T     241     T     241     14   23  113     3    7   18   26   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     P     242     P     242     14   23  113    12   13   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     N     243     N     243     14   23  113    12   13   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     R     244     R     244     14   23  113    12   13   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     L     245     L     245     14   23  113    12   13   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     246     K     246     14   23  113    12   13   18   28   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     K     247     K     247     14   23  113    12   13   17   22   36   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     I     248     I     248     14   23  113    12   13   17   22   35   46   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     R     249     R     249     14   23  113    12   13   17   22   26   43   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     N     250     N     250     14   23  113    12   13   17   22   26   41   56   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     W     251     W     251     14   23  113    12   13   17   22   26   41   54   66   75   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     R     252     R     252     14   23  113    12   13   16   22   26   35   52   65   74   83   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     A     253     A     253     14   23  113    12   13   16   22   26   35   45   63   73   82   90   95  100  103  106  109  110  112  112  113 
LCS_GDT     N     254     N     254     14   23  113     3    6   15   17   23   26   37   54   62   74   86   91   99  103  106  109  110  112  112  113 
LCS_GDT     Q     255     Q     255     14   23  113     3    3    7   17   19   22   27   35   45   59   68   77   87  100  106  107  110  112  112  113 
LCS_GDT     A     256     A     256      4   21  113     0    3   14   17   19   23   28   33   47   56   63   77   86   99  106  107  110  112  112  113 
LCS_AVERAGE  LCS_A:  42.43  (  11.33   15.97  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     18     19     28     36     46     56     66     75     83     90     95    100    103    106    109    110    112    112    113 
GDT PERCENT_CA  15.04  15.93  16.81  24.78  31.86  40.71  49.56  58.41  66.37  73.45  79.65  84.07  88.50  91.15  93.81  96.46  97.35  99.12  99.12 100.00
GDT RMS_LOCAL    0.27   0.35   0.67   1.48   1.73   2.04   2.47   2.77   3.07   3.24   3.50   3.71   3.91   4.02   4.22   4.35   4.42   4.56   4.56   4.66
GDT RMS_ALL_CA   8.12   8.27   7.16   5.06   5.04   4.96   4.79   4.76   4.77   4.78   4.76   4.70   4.71   4.73   4.68   4.68   4.67   4.66   4.66   4.66

#      Molecule1      Molecule2       DISTANCE
LGA    E     144      E     144          2.522
LGA    H     145      H     145          1.587
LGA    P     146      P     146          2.665
LGA    H     147      H     147          1.771
LGA    T     148      T     148          2.690
LGA    D     149      D     149          2.322
LGA    V     150      V     150          1.186
LGA    V     151      V     151          1.470
LGA    K     152      K     152          2.992
LGA    C     153      C     153          2.971
LGA    T     154      T     154          1.477
LGA    Q     155      Q     155          2.016
LGA    L     156      L     156          3.910
LGA    V     157      V     157          3.915
LGA    R     158      R     158          4.922
LGA    A     159      A     159          3.884
LGA    S     160      S     160          5.053
LGA    K     161      K     161          7.385
LGA    D     162      D     162          6.125
LGA    L     163      L     163          3.372
LGA    A     164      A     164          5.483
LGA    Q     165      Q     165          6.684
LGA    T     166      T     166          5.258
LGA    S     167      S     167          4.036
LGA    Y     168      Y     168          5.253
LGA    F     169      F     169          6.187
LGA    M     170      M     170          5.504
LGA    A     171      A     171          3.942
LGA    T     172      T     172          4.717
LGA    N     173      N     173          6.951
LGA    S     174      S     174          6.310
LGA    L     175      L     175          2.862
LGA    H     176      H     176          6.196
LGA    L     177      L     177          3.938
LGA    T     178      T     178          3.654
LGA    T     179      T     179          2.402
LGA    F     180      F     180          3.144
LGA    C     181      C     181          3.081
LGA    L     182      L     182          4.733
LGA    Q     183      Q     183          6.811
LGA    Y     184      Y     184          5.628
LGA    K     185      K     185          3.155
LGA    P     186      P     186          3.772
LGA    T     187      T     187          3.465
LGA    V     188      V     188          2.291
LGA    I     189      I     189          2.758
LGA    A     190      A     190          3.144
LGA    C     191      C     191          2.129
LGA    V     192      V     192          2.779
LGA    C     193      C     193          3.148
LGA    I     194      I     194          2.174
LGA    H     195      H     195          2.790
LGA    L     196      L     196          3.659
LGA    A     197      A     197          3.253
LGA    C     198      C     198          2.855
LGA    K     199      K     199          3.987
LGA    W     200      W     200          4.455
LGA    S     201      S     201          3.753
LGA    N     202      N     202          4.530
LGA    W     203      W     203          4.210
LGA    E     204      E     204          2.517
LGA    I     205      I     205          3.726
LGA    P     206      P     206          5.401
LGA    V     207      V     207          2.116
LGA    S     208      S     208          2.375
LGA    T     209      T     209          4.474
LGA    D     210      D     210          4.517
LGA    G     211      G     211          6.596
LGA    K     212      K     212          5.552
LGA    H     213      H     213          7.425
LGA    W     214      W     214          5.942
LGA    W     215      W     215          7.412
LGA    E     216      E     216          4.325
LGA    Y     217      Y     217          8.064
LGA    V     218      V     218         10.652
LGA    D     219      D     219         11.990
LGA    P     220      P     220          9.267
LGA    T     221      T     221          8.848
LGA    V     222      V     222          8.862
LGA    T     223      T     223          7.048
LGA    L     224      L     224          5.675
LGA    E     225      E     225          5.685
LGA    L     226      L     226          3.893
LGA    L     227      L     227          2.798
LGA    D     228      D     228          3.698
LGA    E     229      E     229          3.436
LGA    L     230      L     230          1.377
LGA    T     231      T     231          1.138
LGA    H     232      H     232          1.760
LGA    E     233      E     233          2.435
LGA    F     234      F     234          2.414
LGA    L     235      L     235          1.489
LGA    Q     236      Q     236          1.859
LGA    I     237      I     237          4.284
LGA    L     238      L     238          4.338
LGA    E     239      E     239          2.672
LGA    K     240      K     240          4.592
LGA    T     241      T     241          3.530
LGA    P     242      P     242          2.956
LGA    N     243      N     243          2.144
LGA    R     244      R     244          2.189
LGA    L     245      L     245          2.805
LGA    K     246      K     246          2.525
LGA    K     247      K     247          2.596
LGA    I     248      I     248          3.087
LGA    R     249      R     249          3.717
LGA    N     250      N     250          3.678
LGA    W     251      W     251          3.991
LGA    R     252      R     252          4.672
LGA    A     253      A     253          5.254
LGA    N     254      N     254          6.450
LGA    Q     255      Q     255          8.775
LGA    A     256      A     256          9.297

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  113  113    4.0     66    2.77    48.894    42.705     2.300

LGA_LOCAL      RMSD =  2.770  Number of atoms =   66  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.730  Number of atoms =  113 
Std_ALL_ATOMS  RMSD =  4.661  (standard rmsd on all 113 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.623752 * X  +  -0.696184 * Y  +   0.355332 * Z  + -27.387827
  Y_new =   0.270639 * X  +  -0.618855 * Y  +  -0.737410 * Z  +  24.362206
  Z_new =   0.733272 * X  +  -0.363794 * Y  +   0.574426 * Z  +  68.118149 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.564558    2.577035  [ DEG:   -32.3468    147.6532 ]
  Theta =  -0.823122   -2.318471  [ DEG:   -47.1614   -132.8386 ]
  Phi   =   2.732218   -0.409375  [ DEG:   156.5446    -23.4555 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS168_4-D2                               
REMARK     2: T0338_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS168_4-D2.T0338_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  113  113   4.0   66   2.77  42.705     4.66
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS168_4-D2
PFRMAT TS
TARGET T0338
MODEL 4
PARENT N/A
ATOM    144  CA  GLU   144     -24.696  18.405  57.315  1.00 25.00           C
ATOM    145  CA  HIS   145     -26.183  17.771  60.787  1.00 25.00           C
ATOM    146  CA  PRO   146     -25.567  19.187  64.267  1.00 25.00           C
ATOM    147  CA  HIS   147     -28.451  18.050  66.498  1.00 25.00           C
ATOM    148  CA  THR   148     -31.890  16.377  66.282  1.00 25.00           C
ATOM    149  CA  ASP   149     -30.474  13.203  67.892  1.00 25.00           C
ATOM    150  CA  VAL   150     -28.928  15.292  70.706  1.00 25.00           C
ATOM    151  CA  VAL   151     -32.280  17.053  71.275  1.00 25.00           C
ATOM    152  CA  LYS   152     -34.062  13.666  71.421  1.00 25.00           C
ATOM    153  CA  CYS   153     -31.492  12.393  73.957  1.00 25.00           C
ATOM    154  CA  THR   154     -32.002  15.535  76.088  1.00 25.00           C
ATOM    155  CA  GLN   155     -35.797  15.028  75.968  1.00 25.00           C
ATOM    156  CA  LEU   156     -35.368  11.376  77.036  1.00 25.00           C
ATOM    157  CA  VAL   157     -33.066  12.423  79.952  1.00 25.00           C
ATOM    158  CA  ARG   158     -33.029  15.244  82.529  1.00 25.00           C
ATOM    159  CA  ALA   159     -30.453  17.849  81.440  1.00 25.00           C
ATOM    160  CA  SER   160     -27.980  18.607  84.229  1.00 25.00           C
ATOM    161  CA  LYS   161     -24.997  19.423  82.014  1.00 25.00           C
ATOM    162  CA  ASP   162     -25.514  16.400  79.721  1.00 25.00           C
ATOM    163  CA  LEU   163     -27.401  18.595  77.212  1.00 25.00           C
ATOM    164  CA  ALA   164     -24.564  21.166  77.291  1.00 25.00           C
ATOM    165  CA  GLN   165     -21.997  18.389  76.684  1.00 25.00           C
ATOM    166  CA  THR   166     -24.060  17.094  73.730  1.00 25.00           C
ATOM    167  CA  SER   167     -24.246  20.631  72.276  1.00 25.00           C
ATOM    168  CA  TYR   168     -20.453  21.009  72.649  1.00 25.00           C
ATOM    169  CA  PHE   169     -19.920  17.652  70.886  1.00 25.00           C
ATOM    170  CA  MET   170     -22.233  18.751  68.039  1.00 25.00           C
ATOM    171  CA  ALA   171     -20.297  22.038  67.703  1.00 25.00           C
ATOM    172  CA  THR   172     -16.992  20.108  67.580  1.00 25.00           C
ATOM    173  CA  ASN   173     -18.411  17.802  64.872  1.00 25.00           C
ATOM    174  CA  SER   174     -19.559  20.844  62.848  1.00 25.00           C
ATOM    175  CA  LEU   175     -16.076  22.405  63.173  1.00 25.00           C
ATOM    176  CA  HIS   176     -14.472  19.132  61.997  1.00 25.00           C
ATOM    177  CA  LEU   177     -12.986  18.039  65.289  1.00 25.00           C
ATOM    178  CA  THR   178     -14.498  14.607  65.564  1.00 25.00           C
ATOM    179  CA  THR   179     -13.050  14.026  62.043  1.00 25.00           C
ATOM    180  CA  PHE   180     -16.331  13.292  60.357  1.00 25.00           C
ATOM    181  CA  CYS   181     -16.390  16.414  58.192  1.00 25.00           C
ATOM    182  CA  LEU   182     -20.176  16.046  58.527  1.00 25.00           C
ATOM    183  CA  GLN   183     -22.089  12.916  57.818  1.00 25.00           C
ATOM    184  CA  TYR   184     -24.346  12.432  60.810  1.00 25.00           C
ATOM    185  CA  LYS   185     -21.207  11.753  62.808  1.00 25.00           C
ATOM    186  CA  PRO   186     -22.126  14.691  65.097  1.00 25.00           C
ATOM    187  CA  THR   187     -25.547  13.488  66.326  1.00 25.00           C
ATOM    188  CA  VAL   188     -23.996  10.184  67.486  1.00 25.00           C
ATOM    189  CA  ILE   189     -21.249  12.098  69.346  1.00 25.00           C
ATOM    190  CA  ALA   190     -23.890  14.301  71.031  1.00 25.00           C
ATOM    191  CA  CYS   191     -25.857  11.186  72.077  1.00 25.00           C
ATOM    192  CA  VAL   192     -22.669   9.629  73.520  1.00 25.00           C
ATOM    193  CA  CYS   193     -21.945  12.849  75.463  1.00 25.00           C
ATOM    194  CA  ILE   194     -25.521  12.851  76.837  1.00 25.00           C
ATOM    195  CA  HIS   195     -25.138   9.194  77.908  1.00 25.00           C
ATOM    196  CA  LEU   196     -21.832  10.026  79.653  1.00 25.00           C
ATOM    197  CA  ALA   197     -23.499  12.958  81.468  1.00 25.00           C
ATOM    198  CA  CYS   198     -26.362  10.672  82.583  1.00 25.00           C
ATOM    199  CA  LYS   199     -23.837   8.098  83.873  1.00 25.00           C
ATOM    200  CA  TRP   200     -21.987  10.842  85.800  1.00 25.00           C
ATOM    201  CA  SER   201     -25.291  12.026  87.333  1.00 25.00           C
ATOM    202  CA  ASN   202     -27.988   9.362  87.305  1.00 25.00           C
ATOM    203  CA  TRP   203     -30.610   8.256  84.780  1.00 25.00           C
ATOM    204  CA  GLU   204     -28.843   5.022  84.091  1.00 25.00           C
ATOM    205  CA  ILE   205     -28.413   4.844  80.364  1.00 25.00           C
ATOM    206  CA  PRO   206     -29.052   1.125  80.828  1.00 25.00           C
ATOM    207  CA  VAL   207     -32.716   0.535  80.006  1.00 25.00           C
ATOM    208  CA  SER   208     -36.358   1.099  79.023  1.00 25.00           C
ATOM    209  CA  THR   209     -39.572   2.709  77.965  1.00 25.00           C
ATOM    210  CA  ASP   210     -39.696   0.510  74.875  1.00 25.00           C
ATOM    211  CA  GLY   211     -37.037   1.773  72.408  1.00 25.00           C
ATOM    212  CA  LYS   212     -37.729  -1.061  69.901  1.00 25.00           C
ATOM    213  CA  HIS   213     -34.137  -2.129  69.255  1.00 25.00           C
ATOM    214  CA  TRP   214     -32.180   1.026  70.064  1.00 25.00           C
ATOM    215  CA  TRP   215     -34.111   2.357  67.037  1.00 25.00           C
ATOM    216  CA  GLU   216     -30.919   2.254  64.924  1.00 25.00           C
ATOM    217  CA  TYR   217     -30.270  -1.354  66.036  1.00 25.00           C
ATOM    218  CA  VAL   218     -27.195  -1.757  68.188  1.00 25.00           C
ATOM    219  CA  ASP   219     -27.170  -5.547  67.997  1.00 25.00           C
ATOM    220  CA  PRO   220     -24.456  -5.474  65.336  1.00 25.00           C
ATOM    221  CA  THR   221     -21.641  -5.314  67.869  1.00 25.00           C
ATOM    222  CA  VAL   222     -20.816  -3.899  71.291  1.00 25.00           C
ATOM    223  CA  THR   223     -17.280  -3.457  69.840  1.00 25.00           C
ATOM    224  CA  LEU   224     -18.693  -0.060  68.879  1.00 25.00           C
ATOM    225  CA  GLU   225     -15.220   0.967  67.635  1.00 25.00           C
ATOM    226  CA  LEU   226     -16.654   4.239  66.257  1.00 25.00           C
ATOM    227  CA  LEU   227     -18.368   4.930  69.612  1.00 25.00           C
ATOM    228  CA  ASP   228     -15.077   4.270  71.457  1.00 25.00           C
ATOM    229  CA  GLU   229     -13.245   6.664  69.094  1.00 25.00           C
ATOM    230  CA  LEU   230     -15.911   9.345  69.701  1.00 25.00           C
ATOM    231  CA  THR   231     -15.557   8.875  73.486  1.00 25.00           C
ATOM    232  CA  HIS   232     -11.753   9.210  73.196  1.00 25.00           C
ATOM    233  CA  GLU   233     -12.167  12.417  71.144  1.00 25.00           C
ATOM    234  CA  PHE   234     -14.566  13.821  73.778  1.00 25.00           C
ATOM    235  CA  LEU   235     -12.058  12.980  76.547  1.00 25.00           C
ATOM    236  CA  GLN   236      -9.269  14.722  74.583  1.00 25.00           C
ATOM    237  CA  ILE   237     -11.485  17.812  74.128  1.00 25.00           C
ATOM    238  CA  LEU   238     -12.243  17.851  77.882  1.00 25.00           C
ATOM    239  CA  GLU   239      -8.503  17.601  78.665  1.00 25.00           C
ATOM    240  CA  LYS   240      -7.783  20.502  76.271  1.00 25.00           C
ATOM    241  CA  THR   241      -4.377  22.213  76.107  1.00 25.00           C
ATOM    242  CA  PRO   242      -5.312  23.410  79.573  1.00 25.00           C
ATOM    243  CA  ASN   243      -6.105  26.974  78.418  1.00 25.00           C
ATOM    244  CA  ARG   244      -9.495  25.808  77.069  1.00 25.00           C
ATOM    245  CA  LEU   245     -10.253  24.077  80.400  1.00 25.00           C
ATOM    246  CA  LYS   246      -9.328  27.273  82.299  1.00 25.00           C
ATOM    247  CA  LYS   247     -11.620  29.322  80.015  1.00 25.00           C
ATOM    248  CA  ILE   248     -14.476  26.844  80.617  1.00 25.00           C
ATOM    249  CA  ARG   249     -13.920  27.083  84.399  1.00 25.00           C
ATOM    250  CA  ASN   250     -13.984  30.907  84.191  1.00 25.00           C
ATOM    251  CA  TRP   251     -17.246  30.768  82.188  1.00 25.00           C
ATOM    252  CA  ARG   252     -18.778  28.422  84.799  1.00 25.00           C
ATOM    253  CA  ALA   253     -17.712  30.804  87.602  1.00 25.00           C
ATOM    254  CA  ASN   254     -18.584  34.525  87.348  1.00 25.00           C
ATOM    255  CA  GLN   255     -20.343  34.328  83.980  1.00 25.00           C
ATOM    256  CA  ALA   256     -22.213  31.377  82.369  1.00 25.00           C
TER
END
