
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  113 (  113),  selected  113 , name T0338TS393_5-D2
# Molecule2: number of CA atoms  113 (  914),  selected  113 , name T0338_D2.pdb
# PARAMETERS: T0338TS393_5-D2.T0338_D2.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   100       144 - 243         4.95    10.14
  LCS_AVERAGE:     83.20

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25       156 - 180         1.98    12.67
  LONGEST_CONTINUOUS_SEGMENT:    25       157 - 181         1.63    13.43
  LCS_AVERAGE:     16.79

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22       159 - 180         0.91    15.75
  LCS_AVERAGE:     12.03

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  113
LCS_GDT     E     144     E     144      3   15  100     3    5    9   19   32   39   52   63   72   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     H     145     H     145      3   15  100     4    7   17   26   32   41   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     P     146     P     146      3   15  100     4    4    4   14   19   35   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     H     147     H     147     11   15  100    10   11   12   16   18   23   31   48   60   69   79   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     148     T     148     11   15  100    10   11   12   16   18   25   34   41   60   67   78   84   87   89   91   92   94   96   96   99 
LCS_GDT     D     149     D     149     11   15  100    10   11   12   16   32   39   52   63   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     V     150     V     150     11   15  100    10   11   12   24   32   41   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     V     151     V     151     11   15  100    10   11   12   16   19   32   48   58   67   76   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     K     152     K     152     11   15  100    10   11   12   22   32   39   52   63   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     C     153     C     153     11   15  100    10   16   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     154     T     154     11   15  100    10   11   12   16   18   29   47   64   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Q     155     Q     155     11   15  100    10   11   12   16   30   39   52   63   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     156     L     156     11   25  100    10   18   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     V     157     V     157     11   25  100     6   12   19   22   26   35   47   64   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     R     158     R     158      4   25  100     3   11   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     A     159     A     159     22   25  100     3   17   21   22   31   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     S     160     S     160     22   25  100     3   15   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     K     161     K     161     22   25  100    12   17   21   22   30   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     D     162     D     162     22   25  100    12   17   21   22   23   39   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     163     L     163     22   25  100    12   17   23   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     A     164     A     164     22   25  100    12   17   21   24   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Q     165     Q     165     22   25  100    12   17   21   22   25   36   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     166     T     166     22   25  100    12   17   21   22   31   41   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     S     167     S     167     22   25  100    12   17   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Y     168     Y     168     22   25  100    12   17   21   22   27   43   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     F     169     F     169     22   25  100    12   17   21   22   23   35   54   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     M     170     M     170     22   25  100    12   17   21   26   32   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     A     171     A     171     22   25  100    12   17   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     172     T     172     22   25  100    12   17   21   22   26   43   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     N     173     N     173     22   25  100    12   17   21   22   31   40   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     S     174     S     174     22   25  100    12   17   21   27   32   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     175     L     175     22   25  100    12   17   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     H     176     H     176     22   25  100    12   17   21   22   32   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     177     L     177     22   25  100     3   12   21   22   29   39   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     178     T     178     22   25  100     3   17   21   22   23   28   46   62   69   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     179     T     179     22   25  100     3   17   21   22   23   29   39   50   65   74   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     F     180     F     180     22   25  100     3    9   12   20   23   24   24   26   61   65   66   74   84   87   90   92   94   95   95   98 
LCS_GDT     C     181     C     181      4   25  100     3    5   18   25   28   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     182     L     182      4    6  100     3    5   13   19   27   36   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Q     183     Q     183      4   22  100     3    7   13   20   27   36   54   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Y     184     Y     184      4   23  100     4   17   21   25   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     K     185     K     185     17   23  100     3    7   10   16   18   23   32   39   49   60   68   78   83   88   91   92   94   96   96   98 
LCS_GDT     P     186     P     186     17   23  100    16   17   18   21   27   43   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     187     T     187     17   23  100    16   17   20   23   31   43   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     V     188     V     188     17   23  100    16   19   21   25   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     I     189     I     189     17   23  100    16   19   21   25   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     A     190     A     190     17   23  100    16   17   21   25   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     C     191     C     191     17   23  100    16   17   18   25   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     V     192     V     192     17   23  100    16   17   18   21   28   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     C     193     C     193     17   23  100    16   17   21   25   28   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     I     194     I     194     17   23  100    16   17   18   25   32   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     H     195     H     195     17   23  100    16   17   18   21   28   42   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     196     L     196     17   23  100    16   17   18   21   26   41   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     A     197     A     197     17   23  100    16   17   18   21   28   41   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     C     198     C     198     17   23  100    16   17   18   21   26   41   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     K     199     K     199     17   23  100    16   17   18   21   26   37   54   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     W     200     W     200     17   23  100    16   17   18   21   26   36   53   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     S     201     S     201     17   23  100    16   17   18   21   26   36   53   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     N     202     N     202      3   23  100     0    4    8   11   16   28   42   59   65   74   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     W     203     W     203      3   23  100     3    8   18   21   26   37   52   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     E     204     E     204      3   23  100     3    6   11   20   25   31   44   59   67   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     I     205     I     205      4   23  100     3    7   11   26   32   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     P     206     P     206      4   23  100     3    6   21   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     V     207     V     207      4   22  100     3    4   10   26   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     S     208     S     208      4    5  100     3    4   12   22   29   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     209     T     209      3    5  100     3    3    7   11   24   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     D     210     D     210      3    5  100     3    3    7   10   24   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     G     211     G     211      3    5  100     3    3    5   21   26   31   40   56   67   75   81   84   86   89   91   92   94   96   96   99 
LCS_GDT     K     212     K     212      3    7  100     3    3    3    4   20   28   31   45   67   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     H     213     H     213      5    7  100     3    3    5    5    6    8   14   17   25   30   43   69   81   85   88   90   92   94   95   98 
LCS_GDT     W     214     W     214      5    7  100     4    4    5    5    9   16   18   23   32   47   65   82   87   89   91   92   94   96   96   99 
LCS_GDT     W     215     W     215      5    7  100     4    4    5    5    6   16   34   60   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     E     216     E     216      5    7  100     4    4    5    9   18   31   46   58   69   76   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Y     217     Y     217      5    7  100     4    4    5   12   18   20   29   35   43   60   69   77   85   88   91   92   94   96   96   99 
LCS_GDT     V     218     V     218      4    7  100     3    3    5    7   12   17   20   24   31   37   46   54   70   75   84   87   93   96   96   99 
LCS_GDT     D     219     D     219      4    6  100     3    3    5    5   11   16   23   25   31   37   46   54   70   75   84   88   93   96   96   99 
LCS_GDT     P     220     P     220      3    5  100     3    3    4    4    5   13   23   27   33   50   56   60   77   83   87   92   94   96   96   99 
LCS_GDT     T     221     T     221      3    5  100     3    3    5    8   13   19   24   27   43   50   62   73   81   86   89   92   94   96   96   99 
LCS_GDT     V     222     V     222      4   19  100     3    3    5    9   14   18   24   35   43   59   73   80   85   87   91   92   94   96   96   99 
LCS_GDT     T     223     T     223      4   19  100     3    3    5    7   15   23   43   51   64   74   80   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     224     L     224     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     E     225     E     225     17   19  100    17   19   24   27   33   43   55   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     226     L     226     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     227     L     227     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     D     228     D     228     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     E     229     E     229     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     230     L     230     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     231     T     231     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     H     232     H     232     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     E     233     E     233     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     F     234     F     234     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     235     L     235     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     Q     236     Q     236     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     I     237     I     237     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     L     238     L     238     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     E     239     E     239     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     K     240     K     240     17   19  100    17   19   24   27   33   43   56   66   73   77   81   84   87   89   91   92   94   96   96   99 
LCS_GDT     T     241     T     241     16   19  100     3   13   15   17   18   24   31   52   68   77   81   84   86   89   91   92   94   96   96   99 
LCS_GDT     P     242     P     242     16   18  100    12   13   15   17   21   25   30   37   47   57   71   80   83   86   90   91   93   95   96   99 
LCS_GDT     N     243     N     243     16   18  100    12   13   15   17   18   19   23   26   30   33   40   50   68   72   77   87   92   93   96   99 
LCS_GDT     R     244     R     244     16   18   48    12   13   15   17   18   19   23   26   30   33   40   60   68   76   86   90   92   95   96   99 
LCS_GDT     L     245     L     245     16   18   48    12   13   15   17   18   19   23   26   30   36   47   60   68   76   85   88   92   95   96   99 
LCS_GDT     K     246     K     246     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   48   57   63   69   82   88   91 
LCS_GDT     K     247     K     247     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   45   48   53   73   78   80 
LCS_GDT     I     248     I     248     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   46   63   68   75   85   91 
LCS_GDT     R     249     R     249     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   54   57   61 
LCS_GDT     N     250     N     250     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   48   50   56 
LCS_GDT     W     251     W     251     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   48   50   56 
LCS_GDT     R     252     R     252     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   48   50   51 
LCS_GDT     A     253     A     253     16   18   48    12   13   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   48   49   50 
LCS_GDT     N     254     N     254     16   18   48     3    4   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   48   49   50 
LCS_GDT     Q     255     Q     255     16   18   48    10   13   15   17   18   19   23   26   30   33   38   41   43   45   45   46   47   48   49   51 
LCS_GDT     A     256     A     256      0   18   48     2    8   11   15   18   19   23   26   30   33   38   41   43   45   45   46   47   48   49   50 
LCS_AVERAGE  LCS_A:  37.34  (  12.03   16.79   83.20 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     19     24     27     33     43     56     66     73     77     81     84     87     89     91     92     94     96     96     99 
GDT PERCENT_CA  15.04  16.81  21.24  23.89  29.20  38.05  49.56  58.41  64.60  68.14  71.68  74.34  76.99  78.76  80.53  81.42  83.19  84.96  84.96  87.61
GDT RMS_LOCAL    0.30   0.39   0.99   1.13   1.60   1.98   2.57   2.79   3.05   3.18   3.41   3.50   3.69   3.79   3.94   4.00   4.18   4.49   4.49   5.01
GDT RMS_ALL_CA  11.96  12.04  10.49  10.43  10.66  10.72  10.46  10.48  10.52  10.41  10.51  10.37  10.39  10.37  10.39  10.42  10.40  10.35  10.35   9.88

#      Molecule1      Molecule2       DISTANCE
LGA    E     144      E     144          6.133
LGA    H     145      H     145          3.941
LGA    P     146      P     146          3.389
LGA    H     147      H     147          7.726
LGA    T     148      T     148          8.585
LGA    D     149      D     149          4.983
LGA    V     150      V     150          3.665
LGA    V     151      V     151          6.833
LGA    K     152      K     152          5.309
LGA    C     153      C     153          0.661
LGA    T     154      T     154          4.833
LGA    Q     155      Q     155          5.482
LGA    L     156      L     156          1.284
LGA    V     157      V     157          4.647
LGA    R     158      R     158          1.180
LGA    A     159      A     159          2.979
LGA    S     160      S     160          2.076
LGA    K     161      K     161          2.671
LGA    D     162      D     162          3.064
LGA    L     163      L     163          1.932
LGA    A     164      A     164          2.385
LGA    Q     165      Q     165          3.465
LGA    T     166      T     166          2.784
LGA    S     167      S     167          1.857
LGA    Y     168      Y     168          3.293
LGA    F     169      F     169          3.575
LGA    M     170      M     170          2.197
LGA    A     171      A     171          2.216
LGA    T     172      T     172          3.365
LGA    N     173      N     173          2.987
LGA    S     174      S     174          2.156
LGA    L     175      L     175          2.233
LGA    H     176      H     176          2.540
LGA    L     177      L     177          3.952
LGA    T     178      T     178          4.610
LGA    T     179      T     179          5.253
LGA    F     180      F     180          7.209
LGA    C     181      C     181          2.379
LGA    L     182      L     182          3.249
LGA    Q     183      Q     183          3.527
LGA    Y     184      Y     184          3.233
LGA    K     185      K     185          8.049
LGA    P     186      P     186          3.927
LGA    T     187      T     187          3.419
LGA    V     188      V     188          2.735
LGA    I     189      I     189          3.174
LGA    A     190      A     190          3.169
LGA    C     191      C     191          2.314
LGA    V     192      V     192          2.884
LGA    C     193      C     193          3.205
LGA    I     194      I     194          2.500
LGA    H     195      H     195          2.928
LGA    L     196      L     196          3.650
LGA    A     197      A     197          3.585
LGA    C     198      C     198          3.354
LGA    K     199      K     199          3.950
LGA    W     200      W     200          4.560
LGA    S     201      S     201          4.414
LGA    N     202      N     202          6.955
LGA    W     203      W     203          4.837
LGA    E     204      E     204          5.661
LGA    I     205      I     205          1.784
LGA    P     206      P     206          1.555
LGA    V     207      V     207          2.293
LGA    S     208      S     208          3.535
LGA    T     209      T     209          2.807
LGA    D     210      D     210          3.090
LGA    G     211      G     211          6.116
LGA    K     212      K     212          6.150
LGA    H     213      H     213          9.590
LGA    W     214      W     214          7.739
LGA    W     215      W     215          5.180
LGA    E     216      E     216          6.872
LGA    Y     217      Y     217         10.550
LGA    V     218      V     218         13.720
LGA    D     219      D     219         14.024
LGA    P     220      P     220         13.491
LGA    T     221      T     221         12.684
LGA    V     222      V     222          9.770
LGA    T     223      T     223          7.932
LGA    L     224      L     224          3.598
LGA    E     225      E     225          3.995
LGA    L     226      L     226          3.126
LGA    L     227      L     227          2.590
LGA    D     228      D     228          3.083
LGA    E     229      E     229          3.309
LGA    L     230      L     230          2.473
LGA    T     231      T     231          2.617
LGA    H     232      H     232          3.041
LGA    E     233      E     233          3.073
LGA    F     234      F     234          2.719
LGA    L     235      L     235          2.614
LGA    Q     236      Q     236          3.277
LGA    I     237      I     237          3.365
LGA    L     238      L     238          2.865
LGA    E     239      E     239          3.059
LGA    K     240      K     240          3.698
LGA    T     241      T     241          4.915
LGA    P     242      P     242          9.086
LGA    N     243      N     243         13.409
LGA    R     244      R     244         11.798
LGA    L     245      L     245         13.107
LGA    K     246      K     246         19.185
LGA    K     247      K     247         20.498
LGA    I     248      I     248         18.702
LGA    R     249      R     249         23.989
LGA    N     250      N     250         28.397
LGA    W     251      W     251         27.074
LGA    R     252      R     252         28.341
LGA    A     253      A     253         34.448
LGA    N     254      N     254         37.667
LGA    Q     255      Q     255         35.202
LGA    A     256      A     256         35.877

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  113  113    4.0     66    2.79    45.133    40.329     2.287

LGA_LOCAL      RMSD =  2.785  Number of atoms =   66  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.443  Number of atoms =  113 
Std_ALL_ATOMS  RMSD =  9.011  (standard rmsd on all 113 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.195924 * X  +  -0.977366 * Y  +   0.079810 * Z  + -23.303738
  Y_new =   0.061712 * X  +  -0.093515 * Y  +  -0.993703 * Z  +  24.012396
  Z_new =   0.978675 * X  +  -0.189765 * Y  +   0.078637 * Z  +  66.253189 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.177947    1.963645  [ DEG:   -67.4914    112.5086 ]
  Theta =  -1.363911   -1.777682  [ DEG:   -78.1463   -101.8537 ]
  Phi   =   2.836453   -0.305140  [ DEG:   162.5168    -17.4832 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0338TS393_5-D2                               
REMARK     2: T0338_D2.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0338TS393_5-D2.T0338_D2.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  113  113   4.0   66   2.79  40.329     9.01
REMARK  ---------------------------------------------------------- 
MOLECULE T0338TS393_5-D2
PFRMAT TS
TARGET T0338
MODEL 5
PARENT N/A
ATOM    144  CA  GLU   144     -24.446  12.583  57.723  1.00 25.00           C
ATOM    145  CA  HIS   145     -25.021  15.108  60.523  1.00 25.00           C
ATOM    146  CA  PRO   146     -27.804  16.947  62.430  1.00 25.00           C
ATOM    147  CA  HIS   147     -29.361  13.476  62.456  1.00 25.00           C
ATOM    148  CA  THR   148     -31.660  10.511  63.223  1.00 25.00           C
ATOM    149  CA  ASP   149     -30.056  10.132  66.681  1.00 25.00           C
ATOM    150  CA  VAL   150     -30.555  13.869  67.350  1.00 25.00           C
ATOM    151  CA  VAL   151     -34.227  13.592  66.299  1.00 25.00           C
ATOM    152  CA  LYS   152     -34.694  10.591  68.634  1.00 25.00           C
ATOM    153  CA  CYS   153     -33.102  12.552  71.512  1.00 25.00           C
ATOM    154  CA  THR   154     -35.429  15.512  70.816  1.00 25.00           C
ATOM    155  CA  GLN   155     -38.455  13.164  70.818  1.00 25.00           C
ATOM    156  CA  LEU   156     -37.318  11.660  74.151  1.00 25.00           C
ATOM    157  CA  VAL   157     -37.564  15.258  75.383  1.00 25.00           C
ATOM    158  CA  ARG   158     -36.389  15.292  78.971  1.00 25.00           C
ATOM    159  CA  ALA   159     -33.621  17.475  77.653  1.00 25.00           C
ATOM    160  CA  SER   160     -32.383  19.253  80.763  1.00 25.00           C
ATOM    161  CA  LYS   161     -29.406  21.324  81.798  1.00 25.00           C
ATOM    162  CA  ASP   162     -26.655  18.665  81.967  1.00 25.00           C
ATOM    163  CA  LEU   163     -27.834  17.197  78.631  1.00 25.00           C
ATOM    164  CA  ALA   164     -27.788  20.687  77.052  1.00 25.00           C
ATOM    165  CA  GLN   165     -24.238  21.262  78.368  1.00 25.00           C
ATOM    166  CA  THR   166     -23.130  17.894  76.921  1.00 25.00           C
ATOM    167  CA  SER   167     -24.678  18.808  73.541  1.00 25.00           C
ATOM    168  CA  TYR   168     -22.861  22.179  73.593  1.00 25.00           C
ATOM    169  CA  PHE   169     -19.557  20.414  74.388  1.00 25.00           C
ATOM    170  CA  MET   170     -20.133  17.976  71.491  1.00 25.00           C
ATOM    171  CA  ALA   171     -20.851  20.908  69.134  1.00 25.00           C
ATOM    172  CA  THR   172     -17.637  22.648  70.281  1.00 25.00           C
ATOM    173  CA  ASN   173     -15.650  19.431  69.671  1.00 25.00           C
ATOM    174  CA  SER   174     -17.166  19.129  66.167  1.00 25.00           C
ATOM    175  CA  LEU   175     -16.240  22.770  65.425  1.00 25.00           C
ATOM    176  CA  HIS   176     -12.658  22.129  66.619  1.00 25.00           C
ATOM    177  CA  LEU   177     -12.417  18.984  64.420  1.00 25.00           C
ATOM    178  CA  THR   178     -14.461  17.103  61.771  1.00 25.00           C
ATOM    179  CA  THR   179     -15.510  20.088  59.659  1.00 25.00           C
ATOM    180  CA  PHE   180     -18.935  20.323  61.362  1.00 25.00           C
ATOM    181  CA  CYS   181     -20.247  16.812  60.672  1.00 25.00           C
ATOM    182  CA  LEU   182     -18.989  14.106  58.360  1.00 25.00           C
ATOM    183  CA  GLN   183     -19.287  10.705  60.147  1.00 25.00           C
ATOM    184  CA  TYR   184     -19.110  11.944  63.733  1.00 25.00           C
ATOM    185  CA  LYS   185     -18.896  15.169  65.747  1.00 25.00           C
ATOM    186  CA  PRO   186     -22.722  15.436  65.357  1.00 25.00           C
ATOM    187  CA  THR   187     -25.840  13.474  66.404  1.00 25.00           C
ATOM    188  CA  VAL   188     -23.638  10.655  67.770  1.00 25.00           C
ATOM    189  CA  ILE   189     -21.558  13.199  69.737  1.00 25.00           C
ATOM    190  CA  ALA   190     -24.756  14.738  71.176  1.00 25.00           C
ATOM    191  CA  CYS   191     -25.999  11.262  72.197  1.00 25.00           C
ATOM    192  CA  VAL   192     -22.644  10.533  73.891  1.00 25.00           C
ATOM    193  CA  CYS   193     -22.839  13.865  75.769  1.00 25.00           C
ATOM    194  CA  ILE   194     -26.401  13.040  76.911  1.00 25.00           C
ATOM    195  CA  HIS   195     -25.242   9.597  78.123  1.00 25.00           C
ATOM    196  CA  LEU   196     -22.356  11.221  80.049  1.00 25.00           C
ATOM    197  CA  ALA   197     -24.792  13.703  81.655  1.00 25.00           C
ATOM    198  CA  CYS   198     -27.105  10.820  82.659  1.00 25.00           C
ATOM    199  CA  LYS   199     -24.140   8.943  84.193  1.00 25.00           C
ATOM    200  CA  TRP   200     -23.130  12.080  86.144  1.00 25.00           C
ATOM    201  CA  SER   201     -26.720  12.471  87.421  1.00 25.00           C
ATOM    202  CA  ASN   202     -30.428  12.893  86.653  1.00 25.00           C
ATOM    203  CA  TRP   203     -32.014  10.860  83.880  1.00 25.00           C
ATOM    204  CA  GLU   204     -33.295   9.333  80.657  1.00 25.00           C
ATOM    205  CA  ILE   205     -31.688   6.356  78.945  1.00 25.00           C
ATOM    206  CA  PRO   206     -32.773   2.996  80.297  1.00 25.00           C
ATOM    207  CA  VAL   207     -33.343  -0.653  79.345  1.00 25.00           C
ATOM    208  CA  SER   208     -36.987  -0.107  80.174  1.00 25.00           C
ATOM    209  CA  THR   209     -39.018   0.928  77.068  1.00 25.00           C
ATOM    210  CA  ASP   210     -36.703  -1.069  74.826  1.00 25.00           C
ATOM    211  CA  GLY   211     -36.477  -0.091  71.117  1.00 25.00           C
ATOM    212  CA  LYS   212     -35.342  -1.287  67.644  1.00 25.00           C
ATOM    213  CA  HIS   213     -32.505  -0.164  65.429  1.00 25.00           C
ATOM    214  CA  TRP   214     -29.805   1.416  67.642  1.00 25.00           C
ATOM    215  CA  TRP   215     -28.634   0.503  71.172  1.00 25.00           C
ATOM    216  CA  GLU   216     -27.092  -2.743  69.847  1.00 25.00           C
ATOM    217  CA  TYR   217     -25.293  -0.790  67.086  1.00 25.00           C
ATOM    218  CA  VAL   218     -22.016  -2.074  68.439  1.00 25.00           C
ATOM    219  CA  ASP   219     -20.486  -5.167  66.879  1.00 25.00           C
ATOM    220  CA  PRO   220     -17.286  -3.093  66.631  1.00 25.00           C
ATOM    221  CA  THR   221     -16.119  -3.866  70.202  1.00 25.00           C
ATOM    222  CA  VAL   222     -19.212  -3.320  72.393  1.00 25.00           C
ATOM    223  CA  THR   223     -18.351  -1.659  75.709  1.00 25.00           C
ATOM    224  CA  LEU   224     -18.409   1.781  74.049  1.00 25.00           C
ATOM    225  CA  GLU   225     -14.741   1.800  72.951  1.00 25.00           C
ATOM    226  CA  LEU   226     -15.563   4.291  70.161  1.00 25.00           C
ATOM    227  CA  LEU   227     -17.390   6.535  72.670  1.00 25.00           C
ATOM    228  CA  ASP   228     -14.377   6.391  75.031  1.00 25.00           C
ATOM    229  CA  GLU   229     -12.040   7.324  72.143  1.00 25.00           C
ATOM    230  CA  LEU   230     -14.308  10.272  71.229  1.00 25.00           C
ATOM    231  CA  THR   231     -14.301  11.442  74.875  1.00 25.00           C
ATOM    232  CA  HIS   232     -10.479  11.215  74.965  1.00 25.00           C
ATOM    233  CA  GLU   233     -10.257  13.251  71.729  1.00 25.00           C
ATOM    234  CA  PHE   234     -12.600  15.898  73.204  1.00 25.00           C
ATOM    235  CA  LEU   235     -10.452  16.070  76.371  1.00 25.00           C
ATOM    236  CA  GLN   236      -7.299  16.491  74.237  1.00 25.00           C
ATOM    237  CA  ILE   237      -8.986  19.300  72.254  1.00 25.00           C
ATOM    238  CA  LEU   238      -9.997  21.030  75.518  1.00 25.00           C
ATOM    239  CA  GLU   239      -6.402  20.748  76.810  1.00 25.00           C
ATOM    240  CA  LYS   240      -5.084  22.242  73.540  1.00 25.00           C
ATOM    241  CA  THR   241      -1.498  21.858  72.159  1.00 25.00           C
ATOM    242  CA  PRO   242      -0.339  23.874  69.129  1.00 25.00           C
ATOM    243  CA  ASN   243       0.203  20.748  66.983  1.00 25.00           C
ATOM    244  CA  ARG   244      -3.530  19.923  67.198  1.00 25.00           C
ATOM    245  CA  LEU   245      -4.406  23.503  66.153  1.00 25.00           C
ATOM    246  CA  LYS   246      -1.999  23.252  63.185  1.00 25.00           C
ATOM    247  CA  LYS   247      -3.590  19.927  62.144  1.00 25.00           C
ATOM    248  CA  ILE   248      -7.075  21.499  62.357  1.00 25.00           C
ATOM    249  CA  ARG   249      -5.904  24.445  60.208  1.00 25.00           C
ATOM    250  CA  ASN   250      -4.456  22.017  57.625  1.00 25.00           C
ATOM    251  CA  TRP   251      -7.760  20.081  57.555  1.00 25.00           C
ATOM    252  CA  ARG   252      -9.691  23.349  57.046  1.00 25.00           C
ATOM    253  CA  ALA   253      -7.347  24.316  54.176  1.00 25.00           C
ATOM    254  CA  ASN   254      -7.797  22.324  50.946  1.00 25.00           C
ATOM    255  CA  GLN   255     -11.389  22.127  52.181  1.00 25.00           C
ATOM    256  CA  ALA   256     -14.657  23.601  53.454  1.00 25.00           C
TER
END
