
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS168_1-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS168_1-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30        29 - 58          4.84    25.46
  LONGEST_CONTINUOUS_SEGMENT:    30        30 - 59          4.87    25.34
  LCS_AVERAGE:     20.43

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       328 - 347         1.51    26.27
  LCS_AVERAGE:     10.15

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       328 - 342         0.98    26.55
  LCS_AVERAGE:      6.98

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   12   19     0    3    4    4    7   10   13   13   13   15   18   20   22   27   30   33   37   40   45   49 
LCS_GDT     D       8     D       8     11   12   19    10   11   11   11   11   13   14   14   15   17   20   20   23   28   30   33   37   40   45   49 
LCS_GDT     L       9     L       9     11   12   19    10   11   11   11   11   13   14   14   15   17   20   22   23   28   30   33   37   40   45   49 
LCS_GDT     R      10     R      10     11   12   19    10   11   11   11   11   13   14   14   16   21   22   24   26   28   30   33   37   40   45   49 
LCS_GDT     D      11     D      11     11   12   19    10   11   11   11   11   13   14   14   15   17   20   21   23   27   30   33   37   40   45   49 
LCS_GDT     F      12     F      12     11   12   19    10   11   11   11   11   13   14   14   15   17   19   20   22   27   27   30   35   39   42   46 
LCS_GDT     L      13     L      13     11   12   19    10   11   11   11   11   13   14   14   15   17   20   23   24   27   28   32   37   39   45   49 
LCS_GDT     T      14     T      14     11   12   19    10   11   11   11   11   13   14   14   15   17   19   20   23   25   28   30   33   39   42   46 
LCS_GDT     L      15     L      15     11   12   19    10   11   11   11   11   13   14   14   15   17   19   20   23   25   28   30   33   34   38   40 
LCS_GDT     L      16     L      16     11   12   19    10   11   11   11   11   13   14   14   15   17   19   20   23   25   28   30   33   34   38   40 
LCS_GDT     E      17     E      17     11   12   19    10   11   11   11   11   13   14   14   15   17   19   20   23   25   28   30   33   34   38   40 
LCS_GDT     Q      18     Q      18     11   12   19    10   11   11   11   11   13   14   14   15   17   19   20   22   25   28   30   33   34   38   40 
LCS_GDT     Q      19     Q      19      3   12   19     3    3    4    6    9   11   13   13   14   16   19   20   22   25   27   30   33   34   38   39 
LCS_GDT     G      20     G      20      3    8   19     3    3    4    5    6    7    8   11   11   13   14   16   19   25   27   30   33   34   38   38 
LCS_GDT     E      21     E      21      5    8   19     3    4    5    6    7    9   10   11   11   12   14   16   19   25   27   30   33   34   38   38 
LCS_GDT     L      22     L      22      5    8   19     3    4    5    6    7    9   10   11   12   14   15   17   23   25   28   30   33   34   38   40 
LCS_GDT     K      23     K      23      5    9   19     3    4    5    6    7    9   10   11   13   16   18   20   23   25   28   30   34   36   40   46 
LCS_GDT     R      24     R      24      5    9   19     3    4    5    6    8    9   10   12   15   17   19   23   26   30   32   39   41   43   48   51 
LCS_GDT     I      25     I      25      5    9   22     3    4    5    6    8    9   11   13   18   20   22   26   31   32   35   40   44   49   53   58 
LCS_GDT     T      26     T      26      3    9   22     3    3    4    6    8    9   10   13   17   20   22   26   29   31   35   39   42   47   52   58 
LCS_GDT     L      27     L      27      4    9   22     3    4    5    6    8    9   10   12   17   19   22   26   29   32   37   42   47   50   57   65 
LCS_GDT     P      28     P      28      4    9   22     3    4    5    6    8    9   10   12   17   19   22   26   29   32   38   45   49   55   59   65 
LCS_GDT     V      29     V      29      4    9   30     1    4    5    6    8   10   15   16   17   22   26   29   35   38   41   45   49   55   59   65 
LCS_GDT     D      30     D      30      4   15   30     1    4    5   12   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     P      31     P      31      4   15   30     3    4    9   12   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     H      32     H      32     13   15   30     3    3   11   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     L      33     L      33     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     E      34     E      34     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     I      35     I      35     13   15   30     6   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     T      36     T      36     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     E      37     E      37     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     I      38     I      38     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     A      39     A      39     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     D      40     D      40     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     R      41     R      41     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     T      42     T      42     13   15   30     9   13   13   14   15   18   19   21   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     L      43     L      43     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     R      44     R      44     13   15   30     9   13   13   14   15   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     A      45     A      45      4   15   30     3    4    5    7    9   13   16   19   21   23   28   28   35   38   41   45   49   55   59   65 
LCS_GDT     G      46     G      46      4    9   30     3    4    5    7    8   11   13   15   18   21   23   26   31   36   40   44   49   55   59   65 
LCS_GDT     G      47     G      47      4    9   30     3    4    5    7    8    9   12   15   18   21   24   26   31   32   37   42   48   55   59   65 
LCS_GDT     P      48     P      48      3    9   30     3    3    5    7    8   11   14   17   22   22   24   26   31   32   37   42   48   54   59   65 
LCS_GDT     A      49     A      49      3    9   30     3    4    5    7    8   15   18   19   21   23   25   26   31   32   37   42   48   54   59   65 
LCS_GDT     L      50     L      50      5    9   30     3    3    5    7   10   15   18   20   21   23   25   26   31   32   37   42   48   55   59   65 
LCS_GDT     L      51     L      51      5    9   30     1    4    5    7   10   15   18   20   21   23   25   26   31   32   37   42   47   52   58   65 
LCS_GDT     F      52     F      52      5    8   30     3    4    5    7   10   15   18   20   21   23   25   26   31   35   38   44   49   55   59   65 
LCS_GDT     E      53     E      53      5    8   30     3    4    5    7   10   15   18   20   21   23   25   26   31   35   38   43   49   55   59   65 
LCS_GDT     N      54     N      54      5    8   30     4    4    5    7   10   15   18   20   21   23   25   29   35   38   41   45   49   55   59   65 
LCS_GDT     P      55     P      55      5    7   30     4    4    5    7   10   15   19   20   21   23   26   29   35   38   41   45   49   55   59   65 
LCS_GDT     K      56     K      56      5    7   30     4    5    7   13   14   18   19   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     G      57     G      57      5    7   30     4    5    6    7    8   14   18   20   22   26   28   28   30   33   38   43   46   50   55   61 
LCS_GDT     Y      58     Y      58      5    7   30     4    5    6    7   13   15   18   20   22   26   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     S      59     S      59      5    7   30     4    5    6    7    8   10   18   20   22   26   28   28   30   35   41   44   49   55   59   65 
LCS_GDT     M      60     M      60      5    6   28     4    5    6    7    8   10   17   20   22   26   28   28   35   38   41   45   49   55   59   65 
LCS_GDT     P      61     P      61      4    6   28     6   13   13   14   15   16   19   20   21   22   28   29   35   38   41   45   49   55   59   65 
LCS_GDT     V      62     V      62      4    6   18     0    3    4    5    6    8   10   12   13   19   22   29   32   38   41   45   49   55   59   65 
LCS_GDT     L      63     L      63      3    6   18     1    3    3    5    7    9   12   14   16   21   25   29   34   38   41   45   49   55   59   65 
LCS_GDT     C      64     C      64      3    6   18     0    3    3    5    7    9   12   14   16   21   24   29   35   38   41   45   49   55   59   65 
LCS_GDT     N      65     N      65      3    6   18     0    3    4    5    6    8   14   16   19   22   26   29   35   38   41   45   49   55   59   65 
LCS_GDT     L      66     L      66      4    6   18     3    4    4    6    6    8   11   14   18   22   26   28   35   38   41   45   49   55   59   65 
LCS_GDT     F      67     F      67      4    6   18     3    4    4    6    6    8   11   14   18   20   22   26   29   31   38   45   49   55   59   65 
LCS_GDT     G      68     G      68      4   11   18     3    4    7    9   10   10   11   14   17   21   22   25   29   31   38   42   47   51   54   60 
LCS_GDT     T      69     T      69      9   11   18     3    8    9    9   10   10   16   18   19   21   22   27   33   34   38   43   47   51   54   64 
LCS_GDT     P      70     P      70      9   11   18     8    8    9    9   10   14   16   18   19   21   22   26   29   32   35   39   47   49   58   64 
LCS_GDT     K      71     K      71      9   11   18     8    8    9    9   10   14   16   18   19   21   22   25   29   30   35   39   43   52   58   64 
LCS_GDT     R      72     R      72      9   11   25     8    8    9    9   10   10   11   15   18   22   26   28   35   38   41   45   49   55   59   65 
LCS_GDT     V      73     V      73      9   11   25     8    8    9    9   10   18   18   20   21   22   26   29   35   38   41   45   49   55   59   65 
LCS_GDT     A      74     A      74      9   11   25     8    8    9    9   10   10   11   13   18   21   26   28   32   37   40   44   48   55   59   65 
LCS_GDT     M      75     M      75      9   11   27     8    8    9    9   10   10   11   14   18   21   23   26   30   36   40   44   48   54   58   65 
LCS_GDT     G      76     G      76      9   11   27     8    8    9    9   10   10   11   14   18   26   28   28   30   37   40   44   49   55   59   65 
LCS_GDT     M      77     M      77      9   11   27     8    8    9   11   17   18   18   18   20   26   28   28   32   37   40   44   48   54   59   65 
LCS_GDT     G      78     G      78      4   11   27     3    3    4    6    6    9   16   19   22   26   28   28   30   36   40   44   47   52   55   61 
LCS_GDT     Q      79     Q      79      7   17   27     3    4    6   11   17   18   18   18   20   26   28   28   30   36   40   44   48   52   55   61 
LCS_GDT     E      80     E      80      7   17   27     5    6    9   16   17   18   18   18   20   26   28   28   30   34   38   42   45   48   53   59 
LCS_GDT     D      81     D      81      7   17   27     5    7   13   16   17   18   18   20   22   26   28   28   32   37   40   44   48   55   59   65 
LCS_GDT     V      82     V      82      7   17   27     5    6   10   16   17   18   19   20   21   22   26   29   35   38   41   45   49   55   59   65 
LCS_GDT     S      83     S      83     13   17   27     5    6   10   16   17   18   18   19   21   22   26   29   35   38   41   45   49   55   59   65 
LCS_GDT     A      84     A      84     13   17   27     5   11   13   16   17   18   18   18   20   22   23   27   32   38   41   45   49   55   59   65 
LCS_GDT     L      85     L      85     13   17   27     8   11   13   16   17   18   18   18   20   22   23   27   32   38   41   45   49   55   59   65 
LCS_GDT     R      86     R      86     13   17   27    10   11   13   16   17   18   18   18   20   21   23   26   31   37   41   45   49   55   59   65 
LCS_GDT     E      87     E      87     13   17   27    10   11   13   16   17   18   18   18   20   21   23   26   31   32   37   42   47   55   59   65 
LCS_GDT     V      88     V      88     13   17   27    10   11   13   16   17   18   18   18   20   21   23   26   31   32   35   39   44   50   56   65 
LCS_GDT     G      89     G      89     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   32   39   42   47   53   58 
LCS_GDT     K      90     K      90     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   32   35   41   45   53   58 
LCS_GDT     L      91     L      91     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   30   36   41   45   48   51 
LCS_GDT     L      92     L      92     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   29   30   34   38   41   46 
LCS_GDT     A      93     A      93     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   29   30   34   37   40   46 
LCS_GDT     F      94     F      94     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   29   30   34   37   40   46 
LCS_GDT     L      95     L      95     13   17   27    10   11   13   16   17   18   18   18   20   21   23   25   27   28   29   30   34   36   39   43 
LCS_GDT     K      96     K      96      3   16   27     0    3    3    4    5    9   17   17   18   21   23   25   27   28   29   30   32   34   37   41 
LCS_GDT     D     314     D     314      3    6   27     0    3    3    4    6    9   12   16   17   19   25   25   26   28   29   31   34   39   46   48 
LCS_GDT     A     315     A     315      4    6   27     3    3    4    4    5    9   12   16   20   23   25   25   28   30   32   35   40   45   47   52 
LCS_GDT     I     316     I     316      4    6   27     3    3    6    7    8    9   11   15   17   19   21   23   25   29   31   33   34   45   47   48 
LCS_GDT     Y     317     Y     317      4    6   27     3    3    6    7    8   11   13   15   17   19   21   23   25   29   31   35   40   45   47   52 
LCS_GDT     H     318     H     318      4    6   27     3    4    6    7    8   11   13   15   17   19   21   23   25   29   31   33   40   45   47   52 
LCS_GDT     S     319     S     319      4    6   26     3    4    6    7   13   14   17   18   19   20   22   24   27   29   32   36   40   45   47   55 
LCS_GDT     T     320     T     320      4    6   20     3    4    6    7    8    9   12   15   19   21   23   26   31   34   40   43   49   55   59   65 
LCS_GDT     Y     321     Y     321      4    6   20     3    4    6    7    8    9   12   14   16   19   21   26   31   34   38   43   49   53   59   65 
LCS_GDT     T     322     T     322      4    6   26     3    3    5    6    8    9   12   14   16   19   24   29   35   38   41   45   49   55   59   65 
LCS_GDT     G     323     G     323      4    5   26     3    4    5    6    8    9   12   14   16   19   21   29   35   38   41   45   49   55   59   65 
LCS_GDT     R     324     R     324      3    5   26     3    4    4    5    8    9   12   14   16   19   21   29   35   38   41   45   49   55   59   65 
LCS_GDT     P     325     P     325      3    5   26     3    3    3    5    8   10   12   14   16   19   24   29   35   38   41   45   49   55   59   65 
LCS_GDT     P     326     P     326      3    5   26     3    4    4    5    8   10   12   14   17   18   21   25   33   34   38   45   49   53   57   65 
LCS_GDT     D     327     D     327      3   17   26     3    3    5    6    8   10   14   16   18   20   21   24   26   31   35   42   47   49   56   63 
LCS_GDT     E     328     E     328     15   20   26     7   12   14   17   20   20   20   21   22   22   24   29   35   38   41   45   49   55   59   65 
LCS_GDT     P     329     P     329     15   20   26     9   13   16   18   20   20   20   21   22   22   24   27   33   38   41   45   49   55   59   65 
LCS_GDT     A     330     A     330     15   20   26     9   13   16   18   20   20   20   21   22   22   24   26   28   32   38   42   47   49   56   63 
LCS_GDT     V     331     V     331     15   20   26     9   13   16   18   20   20   20   21   22   22   24   26   29   32   38   43   48   53   58   65 
LCS_GDT     L     332     L     332     15   20   26     9   13   16   18   20   20   20   21   22   22   26   29   33   34   40   45   49   55   59   65 
LCS_GDT     G     333     G     333     15   20   26     9   13   16   18   20   20   20   21   22   22   24   25   27   31   35   39   47   49   56   64 
LCS_GDT     V     334     V     334     15   20   26     9   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   38   41   48   51 
LCS_GDT     A     335     A     335     15   20   26     9   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   37   40   45   49 
LCS_GDT     L     336     L     336     15   20   26     9   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   37   40   45   54 
LCS_GDT     N     337     N     337     15   20   26     9   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   37   40   45   49 
LCS_GDT     E     338     E     338     15   20   26     4   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   37   40   45   49 
LCS_GDT     V     339     V     339     15   20   26     5   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   37   40   45   49 
LCS_GDT     F     340     F     340     15   20   26     7   13   16   18   20   20   20   21   22   22   24   24   26   27   30   33   37   40   45   49 
LCS_GDT     V     341     V     341     15   20   26     7   13   16   18   20   20   20   21   22   22   24   24   26   27   28   30   35   38   42   46 
LCS_GDT     P     342     P     342     15   20   26     7   10   13   18   20   20   20   21   22   22   24   24   26   26   26   30   35   38   42   44 
LCS_GDT     I     343     I     343     13   20   26     7   10   16   18   20   20   20   21   22   22   24   24   26   27   29   32   35   39   42   47 
LCS_GDT     L     344     L     344     13   20   26     7   10   16   18   20   20   20   21   22   22   24   24   26   26   28   31   35   38   42   44 
LCS_GDT     Q     345     Q     345     13   20   26     7   10   16   18   20   20   20   21   22   22   24   24   26   26   26   30   35   38   39   41 
LCS_GDT     K     346     K     346     12   20   26     7   10   13   18   20   20   20   21   22   22   24   24   26   26   26   30   35   38   41   42 
LCS_GDT     Q     347     Q     347     12   20   26     3    8   12   16   20   20   20   21   21   22   24   24   26   26   26   30   35   38   42   43 
LCS_AVERAGE  LCS_A:  12.52  (   6.98   10.15   20.43 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     16     18     20     20     20     21     22     26     28     29     35     38     41     45     49     55     59     65 
GDT PERCENT_CA   8.06  10.48  12.90  14.52  16.13  16.13  16.13  16.94  17.74  20.97  22.58  23.39  28.23  30.65  33.06  36.29  39.52  44.35  47.58  52.42
GDT RMS_LOCAL    0.19   0.49   1.12   1.31   1.51   1.51   1.51   1.94   2.73   3.31   3.53   4.09   4.80   5.03   5.25   5.71   6.02   6.71   7.03   7.48
GDT RMS_ALL_CA  29.55  21.09  26.64  26.65  26.27  26.27  26.27  25.41  21.60  21.95  21.81  20.14  19.93  19.97  20.14  19.74  19.82  19.47  19.37  19.09

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         32.320
LGA    D       8      D       8         35.773
LGA    L       9      L       9         31.497
LGA    R      10      R      10         31.370
LGA    D      11      D      11         32.234
LGA    F      12      F      12         29.505
LGA    L      13      L      13         26.581
LGA    T      14      T      14         27.803
LGA    L      15      L      15         27.343
LGA    L      16      L      16         24.037
LGA    E      17      E      17         23.366
LGA    Q      18      Q      18         24.188
LGA    Q      19      Q      19         24.689
LGA    G      20      G      20         26.945
LGA    E      21      E      21         25.297
LGA    L      22      L      22         25.103
LGA    K      23      K      23         24.034
LGA    R      24      R      24         24.970
LGA    I      25      I      25         26.645
LGA    T      26      T      26         29.436
LGA    L      27      L      27         28.442
LGA    P      28      P      28         33.294
LGA    V      29      V      29         33.212
LGA    D      30      D      30         36.200
LGA    P      31      P      31         34.109
LGA    H      32      H      32         34.098
LGA    L      33      L      33         31.061
LGA    E      34      E      34         26.656
LGA    I      35      I      35         22.819
LGA    T      36      T      36         21.076
LGA    E      37      E      37         19.673
LGA    I      38      I      38         14.251
LGA    A      39      A      39         11.370
LGA    D      40      D      40         13.170
LGA    R      41      R      41          9.558
LGA    T      42      T      42          3.585
LGA    L      43      L      43          6.806
LGA    R      44      R      44         12.211
LGA    A      45      A      45         12.094
LGA    G      46      G      46         10.980
LGA    G      47      G      47          8.193
LGA    P      48      P      48          5.017
LGA    A      49      A      49         10.778
LGA    L      50      L      50         14.587
LGA    L      51      L      51         21.500
LGA    F      52      F      52         27.468
LGA    E      53      E      53         34.065
LGA    N      54      N      54         36.264
LGA    P      55      P      55         38.699
LGA    K      56      K      56         38.909
LGA    G      57      G      57         43.515
LGA    Y      58      Y      58         40.814
LGA    S      59      S      59         40.308
LGA    M      60      M      60         34.720
LGA    P      61      P      61         33.779
LGA    V      62      V      62         31.972
LGA    L      63      L      63         25.334
LGA    C      64      C      64         18.146
LGA    N      65      N      65         13.108
LGA    L      66      L      66         15.190
LGA    F      67      F      67         14.156
LGA    G      68      G      68         11.701
LGA    T      69      T      69         11.326
LGA    P      70      P      70          9.541
LGA    K      71      K      71         10.281
LGA    R      72      R      72         12.963
LGA    V      73      V      73         13.138
LGA    A      74      A      74         13.278
LGA    M      75      M      75         15.124
LGA    G      76      G      76         16.912
LGA    M      77      M      77         17.775
LGA    G      78      G      78         22.322
LGA    Q      79      Q      79         24.828
LGA    E      80      E      80         26.177
LGA    D      81      D      81         29.885
LGA    V      82      V      82         27.616
LGA    S      83      S      83         33.352
LGA    A      84      A      84         33.156
LGA    L      85      L      85         26.921
LGA    R      86      R      86         30.478
LGA    E      87      E      87         35.315
LGA    V      88      V      88         30.901
LGA    G      89      G      89         28.539
LGA    K      90      K      90         35.054
LGA    L      91      L      91         37.323
LGA    L      92      L      92         32.847
LGA    A      93      A      93         34.227
LGA    F      94      F      94         41.308
LGA    L      95      L      95         41.274
LGA    K      96      K      96         44.930
LGA    D     314      D     314         41.675
LGA    A     315      A     315         36.824
LGA    I     316      I     316         33.287
LGA    Y     317      Y     317         28.948
LGA    H     318      H     318         21.952
LGA    S     319      S     319         18.342
LGA    T     320      T     320         14.665
LGA    Y     321      Y     321         13.551
LGA    T     322      T     322         17.333
LGA    G     323      G     323         22.869
LGA    R     324      R     324         22.906
LGA    P     325      P     325         17.095
LGA    P     326      P     326         14.966
LGA    D     327      D     327          8.771
LGA    E     328      E     328          2.623
LGA    P     329      P     329          1.329
LGA    A     330      A     330          0.633
LGA    V     331      V     331          2.253
LGA    L     332      L     332          2.715
LGA    G     333      G     333          1.711
LGA    V     334      V     334          1.245
LGA    A     335      A     335          2.738
LGA    L     336      L     336          3.007
LGA    N     337      N     337          1.657
LGA    E     338      E     338          1.253
LGA    V     339      V     339          1.717
LGA    F     340      F     340          1.595
LGA    V     341      V     341          0.706
LGA    P     342      P     342          1.418
LGA    I     343      I     343          0.745
LGA    L     344      L     344          1.986
LGA    Q     345      Q     345          2.515
LGA    K     346      K     346          2.931
LGA    Q     347      Q     347          3.329

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     21    1.94    19.556    16.849     1.030

LGA_LOCAL      RMSD =  1.939  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.473  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 16.420  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.110624 * X  +   0.920220 * Y  +   0.375442 * Z  +  61.005318
  Y_new =   0.778895 * X  +  -0.314913 * Y  +   0.542359 * Z  +  75.927925
  Z_new =   0.617321 * X  +   0.232432 * Y  +  -0.751592 * Z  +  69.443352 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.841669   -0.299924  [ DEG:   162.8156    -17.1844 ]
  Theta =  -0.665333   -2.476259  [ DEG:   -38.1208   -141.8792 ]
  Phi   =   1.429713   -1.711880  [ DEG:    81.9165    -98.0835 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS168_1-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS168_1-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   21   1.94  16.849    16.42
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS168_1-D1
PFRMAT TS
TARGET T0356
MODEL 1
PARENT N/A
ATOM      7  CA  ASN     7      49.272  88.472  65.009  1.00 25.00           C
ATOM      8  CA  ASP     8      45.761  88.466  66.540  1.00 25.00           C
ATOM      9  CA  LEU     9      47.220  87.479  69.942  1.00 25.00           C
ATOM     10  CA  ARG    10      49.787  90.310  69.689  1.00 25.00           C
ATOM     11  CA  ASP    11      47.000  92.794  68.835  1.00 25.00           C
ATOM     12  CA  PHE    12      44.964  91.582  71.843  1.00 25.00           C
ATOM     13  CA  LEU    13      48.022  92.000  74.112  1.00 25.00           C
ATOM     14  CA  THR    14      48.559  95.548  72.775  1.00 25.00           C
ATOM     15  CA  LEU    15      44.878  96.379  73.431  1.00 25.00           C
ATOM     16  CA  LEU    16      45.182  95.023  76.999  1.00 25.00           C
ATOM     17  CA  GLU    17      48.320  97.145  77.565  1.00 25.00           C
ATOM     18  CA  GLN    18      46.490 100.245  76.259  1.00 25.00           C
ATOM     19  CA  GLN    19      45.865 101.656  72.736  1.00 25.00           C
ATOM     20  CA  GLY    20      48.763 102.270  70.306  1.00 25.00           C
ATOM     21  CA  GLU    21      51.793 100.106  71.275  1.00 25.00           C
ATOM     22  CA  LEU    22      53.305  97.146  73.064  1.00 25.00           C
ATOM     23  CA  LYS    23      53.274  94.843  76.161  1.00 25.00           C
ATOM     24  CA  ARG    24      52.399  91.236  77.128  1.00 25.00           C
ATOM     25  CA  ILE    25      49.496  89.247  78.416  1.00 25.00           C
ATOM     26  CA  THR    26      48.653  91.944  81.027  1.00 25.00           C
ATOM     27  CA  LEU    27      47.637  91.208  84.616  1.00 25.00           C
ATOM     28  CA  PRO    28      44.024  90.251  83.907  1.00 25.00           C
ATOM     29  CA  VAL    29      41.697  87.717  82.422  1.00 25.00           C
ATOM     30  CA  ASP    30      39.241  85.067  81.291  1.00 25.00           C
ATOM     31  CA  PRO    31      41.978  83.008  79.574  1.00 25.00           C
ATOM     32  CA  HIS    32      45.734  83.064  78.828  1.00 25.00           C
ATOM     33  CA  LEU    33      46.357  85.134  81.989  1.00 25.00           C
ATOM     34  CA  GLU    34      44.295  82.652  84.051  1.00 25.00           C
ATOM     35  CA  ILE    35      46.298  79.735  82.589  1.00 25.00           C
ATOM     36  CA  THR    36      49.575  81.522  83.449  1.00 25.00           C
ATOM     37  CA  GLU    37      48.344  82.110  87.027  1.00 25.00           C
ATOM     38  CA  ILE    38      47.405  78.409  87.338  1.00 25.00           C
ATOM     39  CA  ALA    39      50.873  77.398  86.065  1.00 25.00           C
ATOM     40  CA  ASP    40      52.518  79.741  88.610  1.00 25.00           C
ATOM     41  CA  ARG    41      50.389  78.230  91.413  1.00 25.00           C
ATOM     42  CA  THR    42      51.395  74.703  90.309  1.00 25.00           C
ATOM     43  CA  LEU    43      55.084  75.730  90.304  1.00 25.00           C
ATOM     44  CA  ARG    44      54.708  77.191  93.824  1.00 25.00           C
ATOM     45  CA  ALA    45      56.701  80.140  92.429  1.00 25.00           C
ATOM     46  CA  GLY    46      55.461  83.358  90.690  1.00 25.00           C
ATOM     47  CA  GLY    47      54.964  84.192  87.004  1.00 25.00           C
ATOM     48  CA  PRO    48      55.468  81.146  84.780  1.00 25.00           C
ATOM     49  CA  ALA    49      54.102  80.835  81.267  1.00 25.00           C
ATOM     50  CA  LEU    50      54.614  77.944  78.826  1.00 25.00           C
ATOM     51  CA  LEU    51      52.226  79.692  76.460  1.00 25.00           C
ATOM     52  CA  PHE    52      48.623  79.862  75.201  1.00 25.00           C
ATOM     53  CA  GLU    53      45.559  79.202  72.963  1.00 25.00           C
ATOM     54  CA  ASN    54      42.787  80.496  75.284  1.00 25.00           C
ATOM     55  CA  PRO    55      39.067  81.051  75.912  1.00 25.00           C
ATOM     56  CA  LYS    56      38.152  79.207  79.156  1.00 25.00           C
ATOM     57  CA  GLY    57      36.468  76.158  77.626  1.00 25.00           C
ATOM     58  CA  TYR    58      40.079  75.432  76.643  1.00 25.00           C
ATOM     59  CA  SER    59      41.102  71.801  76.800  1.00 25.00           C
ATOM     60  CA  MET    60      44.738  72.725  77.111  1.00 25.00           C
ATOM     61  CA  PRO    61      45.029  73.047  73.346  1.00 25.00           C
ATOM     62  CA  VAL    62      46.456  71.692  70.129  1.00 25.00           C
ATOM     63  CA  LEU    63      49.563  70.825  72.220  1.00 25.00           C
ATOM     64  CA  CYS    64      52.755  70.798  74.349  1.00 25.00           C
ATOM     65  CA  ASN    65      51.260  72.142  77.579  1.00 25.00           C
ATOM     66  CA  LEU    66      48.895  72.726  80.537  1.00 25.00           C
ATOM     67  CA  PHE    67      48.374  70.347  83.468  1.00 25.00           C
ATOM     68  CA  GLY    68      48.162  66.979  81.774  1.00 25.00           C
ATOM     69  CA  THR    69      51.572  65.256  81.280  1.00 25.00           C
ATOM     70  CA  PRO    70      54.278  67.339  79.618  1.00 25.00           C
ATOM     71  CA  LYS    71      54.874  70.587  81.558  1.00 25.00           C
ATOM     72  CA  ARG    72      54.375  68.729  84.869  1.00 25.00           C
ATOM     73  CA  VAL    73      56.860  66.035  83.762  1.00 25.00           C
ATOM     74  CA  ALA    74      59.405  68.736  82.817  1.00 25.00           C
ATOM     75  CA  MET    75      58.944  70.400  86.236  1.00 25.00           C
ATOM     76  CA  GLY    76      59.468  67.029  87.975  1.00 25.00           C
ATOM     77  CA  MET    77      62.656  66.443  85.936  1.00 25.00           C
ATOM     78  CA  GLY    78      65.573  64.292  87.101  1.00 25.00           C
ATOM     79  CA  GLN    79      65.647  66.066  90.523  1.00 25.00           C
ATOM     80  CA  GLU    80      68.541  65.738  92.979  1.00 25.00           C
ATOM     81  CA  ASP    81      68.107  62.039  92.298  1.00 25.00           C
ATOM     82  CA  VAL    82      67.136  60.009  89.249  1.00 25.00           C
ATOM     83  CA  SER    83      65.064  57.181  90.793  1.00 25.00           C
ATOM     84  CA  ALA    84      62.877  59.745  92.613  1.00 25.00           C
ATOM     85  CA  LEU    85      62.361  61.664  89.339  1.00 25.00           C
ATOM     86  CA  ARG    86      61.383  58.418  87.560  1.00 25.00           C
ATOM     87  CA  GLU    87      58.893  57.609  90.354  1.00 25.00           C
ATOM     88  CA  VAL    88      57.390  61.120  90.066  1.00 25.00           C
ATOM     89  CA  GLY    89      57.058  60.692  86.274  1.00 25.00           C
ATOM     90  CA  LYS    90      55.329  57.312  86.782  1.00 25.00           C
ATOM     91  CA  LEU    91      52.916  58.897  89.300  1.00 25.00           C
ATOM     92  CA  LEU    92      52.137  61.710  86.820  1.00 25.00           C
ATOM     93  CA  ALA    93      51.475  59.132  84.067  1.00 25.00           C
ATOM     94  CA  PHE    94      49.139  57.198  86.405  1.00 25.00           C
ATOM     95  CA  LEU    95      47.267  60.431  87.250  1.00 25.00           C
ATOM     96  CA  LYS    96      45.584  60.525  90.646  1.00 25.00           C
ATOM    314  CA  ASP   314      56.174  76.295  61.052  1.00 25.00           C
ATOM    315  CA  ALA   315      56.218  79.035  63.731  1.00 25.00           C
ATOM    316  CA  ILE   316      59.934  78.442  63.183  1.00 25.00           C
ATOM    317  CA  TYR   317      61.856  76.310  65.667  1.00 25.00           C
ATOM    318  CA  HIS   318      63.736  74.095  68.168  1.00 25.00           C
ATOM    319  CA  SER   319      64.985  73.531  71.663  1.00 25.00           C
ATOM    320  CA  THR   320      62.831  73.809  74.754  1.00 25.00           C
ATOM    321  CA  TYR   321      64.553  72.926  78.058  1.00 25.00           C
ATOM    322  CA  THR   322      64.893  76.468  79.461  1.00 25.00           C
ATOM    323  CA  GLY   323      67.984  78.346  80.603  1.00 25.00           C
ATOM    324  CA  ARG   324      68.224  76.155  83.649  1.00 25.00           C
ATOM    325  CA  PRO   325      65.866  73.142  83.306  1.00 25.00           C
ATOM    326  CA  PRO   326      66.831  69.454  82.928  1.00 25.00           C
ATOM    327  CA  ASP   327      64.802  66.440  81.846  1.00 25.00           C
ATOM    328  CA  GLU   328      61.373  67.538  80.613  1.00 25.00           C
ATOM    329  CA  PRO   329      61.156  64.628  78.133  1.00 25.00           C
ATOM    330  CA  ALA   330      57.813  65.959  76.823  1.00 25.00           C
ATOM    331  CA  VAL   331      59.339  69.445  76.397  1.00 25.00           C
ATOM    332  CA  LEU   332      62.303  67.941  74.493  1.00 25.00           C
ATOM    333  CA  GLY   333      59.897  66.015  72.219  1.00 25.00           C
ATOM    334  CA  VAL   334      57.918  69.226  71.552  1.00 25.00           C
ATOM    335  CA  ALA   335      61.161  71.074  70.696  1.00 25.00           C
ATOM    336  CA  LEU   336      62.163  68.259  68.300  1.00 25.00           C
ATOM    337  CA  ASN   337      58.722  68.427  66.627  1.00 25.00           C
ATOM    338  CA  GLU   338      59.065  72.221  66.242  1.00 25.00           C
ATOM    339  CA  VAL   339      62.536  71.775  64.688  1.00 25.00           C
ATOM    340  CA  PHE   340      61.137  69.173  62.251  1.00 25.00           C
ATOM    341  CA  VAL   341      58.301  71.561  61.291  1.00 25.00           C
ATOM    342  CA  PRO   342      60.835  74.371  60.700  1.00 25.00           C
ATOM    343  CA  ILE   343      62.940  72.045  58.505  1.00 25.00           C
ATOM    344  CA  LEU   344      59.825  71.080  56.496  1.00 25.00           C
ATOM    345  CA  GLN   345      58.951  74.780  56.028  1.00 25.00           C
ATOM    346  CA  LYS   346      62.520  75.498  54.837  1.00 25.00           C
ATOM    347  CA  GLN   347      62.304  72.587  52.358  1.00 25.00           C
TER
END
