
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS168_2-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS168_2-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        10 - 52          4.90    31.08
  LCS_AVERAGE:     25.69

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       328 - 347         1.51    27.25
  LCS_AVERAGE:     10.74

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       328 - 342         0.98    28.32
  LCS_AVERAGE:      7.18

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   14   20     0    3    3    4   12   14   15   17   17   18   24   30   31   33   33   35   39   39   44   45 
LCS_GDT     D       8     D       8     12   14   21    10   11   11   12   12   14   15   17   17   22   25   30   31   33   36   37   43   43   44   45 
LCS_GDT     L       9     L       9     12   14   39    10   11   11   12   12   14   15   17   18   22   25   30   31   33   39   41   43   44   44   45 
LCS_GDT     R      10     R      10     12   14   43    10   11   11   12   12   14   15   17   22   27   30   35   38   39   42   43   43   44   44   45 
LCS_GDT     D      11     D      11     12   14   43    10   11   11   12   12   14   15   17   18   25   28   33   38   39   42   43   43   44   44   45 
LCS_GDT     F      12     F      12     12   14   43    10   11   11   12   12   14   15   17   18   22   25   31   32   38   42   43   43   44   44   45 
LCS_GDT     L      13     L      13     12   14   43    10   11   11   12   12   14   15   17   22   26   31   35   38   39   42   43   43   44   44   45 
LCS_GDT     T      14     T      14     12   14   43    10   11   11   12   12   14   16   21   25   30   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     L      15     L      15     12   14   43    10   11   11   12   12   14   15   17   23   30   33   37   38   39   42   43   43   44   44   45 
LCS_GDT     L      16     L      16     12   14   43    10   11   11   12   12   14   15   17   23   27   33   37   38   39   42   43   43   44   44   45 
LCS_GDT     E      17     E      17     12   14   43    10   11   11   12   12   14   18   21   24   30   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     Q      18     Q      18     12   14   43    10   11   11   12   12   15   19   22   25   30   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     Q      19     Q      19     12   14   43     3    3   11   12   12   15   19   22   25   30   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     G      20     G      20      3   14   43     3    3    4    7   12   15   19   22   25   29   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     E      21     E      21      3   14   43     3    3    5    8   12   15   19   22   25   30   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     L      22     L      22      4    9   43     2    3    6    7   14   18   22   26   28   30   34   37   38   39   42   43   43   44   44   45 
LCS_GDT     K      23     K      23      4    9   43     0    3    6    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   48 
LCS_GDT     R      24     R      24      4    9   43     3    3    6    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   48 
LCS_GDT     I      25     I      25      4    9   43     3    3    6    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   48 
LCS_GDT     T      26     T      26      4    9   43     3    3    4    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   48 
LCS_GDT     L      27     L      27      4    9   43     3    3    4    7   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   48 
LCS_GDT     P      28     P      28      4    9   43     3    3    4    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   44   47 
LCS_GDT     V      29     V      29      4    9   43     3    3    4    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     D      30     D      30      4   16   43     3    4    4    6   14   18   22   26   28   30   34   37   37   39   42   43   43   44   46   49 
LCS_GDT     P      31     P      31      4   16   43     3    4    4   12   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     H      32     H      32     14   16   43     3    4   11   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     L      33     L      33     14   16   43     7   12   13   14   15   16   19   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     E      34     E      34     14   16   43     6   12   13   14   15   16   20   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     I      35     I      35     14   16   43     6   12   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     T      36     T      36     14   16   43     7   12   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     E      37     E      37     14   16   43     8   12   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     I      38     I      38     14   16   43     8   12   13   14   15   16   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     A      39     A      39     14   16   43     8   12   13   14   15   16   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     D      40     D      40     14   16   43     8   12   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   47 
LCS_GDT     R      41     R      41     14   16   43     8   12   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     T      42     T      42     14   16   43     8   12   13   14   15   16   19   26   28   30   33   37   38   39   42   43   43   44   45   49 
LCS_GDT     L      43     L      43     14   16   43     8   12   13   14   15   16   19   24   28   30   30   32   35   39   42   43   43   44   45   48 
LCS_GDT     R      44     R      44     14   16   43     8   12   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   45   47 
LCS_GDT     A      45     A      45     14   16   43     5    9   13   14   15   18   22   26   28   30   34   37   38   39   42   43   43   44   45   49 
LCS_GDT     G      46     G      46      5   16   43     3    5    6    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   49 
LCS_GDT     G      47     G      47      5    7   43     3    5    6    8   14   18   22   26   28   30   34   37   38   39   42   43   43   44   45   49 
LCS_GDT     P      48     P      48      5    7   43     3    5    6    7   11   15   21   25   28   30   34   37   38   39   42   43   43   44   44   49 
LCS_GDT     A      49     A      49      5    7   43     3    4    6    6    8   10   11   18   21   27   30   31   35   39   42   43   43   44   45   49 
LCS_GDT     L      50     L      50      4    7   43     3    4    6    7    8   15   18   22   28   30   34   37   38   39   42   43   43   44   45   49 
LCS_GDT     L      51     L      51      4    7   43     3    4    6    7    8   12   16   24   28   30   34   37   38   39   42   43   43   44   45   49 
LCS_GDT     F      52     F      52      4    7   43     3    4    6    7   10   16   21   26   28   30   34   37   38   39   42   43   43   44   46   49 
LCS_GDT     E      53     E      53      4    7   42     3    4    6    6    7   10   11   13   17   23   25   30   33   37   39   41   43   44   46   49 
LCS_GDT     N      54     N      54      3    7   40     3    3    4    6    6    8    9   11   15   16   22   23   27   31   34   37   40   43   46   49 
LCS_GDT     P      55     P      55      3    7   36     3    3    4    6    6   10   10   12   15   17   24   29   29   31   32   37   40   43   46   49 
LCS_GDT     K      56     K      56      3    7   20     3    3    4    6    6    8    9   11   12   15   20   22   22   23   28   31   36   39   45   47 
LCS_GDT     G      57     G      57      4    6   20     4    4    4    6    6    7    9   12   15   15   20   22   23   26   28   30   39   41   41   45 
LCS_GDT     Y      58     Y      58      4    6   17     4    4    4    6    6    7    9   12   15   16   20   22   26   31   33   38   42   43   45   49 
LCS_GDT     S      59     S      59      4    5   14     4    4    4    5    7    8    9   11   12   16   20   22   23   25   29   34   38   42   45   49 
LCS_GDT     M      60     M      60      4    5   14     4    4    4    5    5    6    9   11   11   15   17   20   22   25   29   34   38   42   45   49 
LCS_GDT     P      61     P      61      4    5   20     0    3    4    5    5    6   10   12   16   16   18   21   25   26   29   37   40   43   46   49 
LCS_GDT     V      62     V      62      4    5   20     0    3    4    7    8    9   13   13   16   18   20   22   25   29   32   37   40   43   46   49 
LCS_GDT     L      63     L      63      3    5   20     1    3    4    7    8   10   13   15   16   18   20   22   25   29   32   37   40   43   46   49 
LCS_GDT     C      64     C      64      3    6   20     2    3    5    7   10   12   13   15   16   18   20   22   26   29   32   37   40   43   46   49 
LCS_GDT     N      65     N      65      3    6   20     0    3    3    7   10   12   13   15   20   22   24   29   29   31   34   37   40   43   46   49 
LCS_GDT     L      66     L      66      4    6   20     3    4    4    7    8   11   13   15   16   18   22   23   27   31   34   37   40   43   46   49 
LCS_GDT     F      67     F      67      4    6   20     3    4    4    5    5    7   11   12   15   18   20   20   22   26   32   35   40   43   46   49 
LCS_GDT     G      68     G      68      4    6   20     3    4    4    5    8   12   13   15   16   18   20   29   29   31   32   37   40   43   46   48 
LCS_GDT     T      69     T      69      4   10   20     3    4    4    7   10   12   13   15   16   18   20   20   23   26   29   34   38   42   46   49 
LCS_GDT     P      70     P      70      9   10   20     7    8    9    9    9   10   13   15   16   18   20   20   23   26   29   30   37   43   45   49 
LCS_GDT     K      71     K      71      9   10   20     7    8    9    9   10   12   13   15   16   18   20   21   23   26   29   34   40   43   46   49 
LCS_GDT     R      72     R      72      9   10   20     7    8    9    9   10   12   13   15   16   18   20   22   25   26   32   37   40   43   46   49 
LCS_GDT     V      73     V      73      9   10   24     7    8    9    9   10   12   13   15   16   18   20   22   25   28   34   37   40   43   45   49 
LCS_GDT     A      74     A      74      9   10   24     7    8    9    9   10   12   13   15   16   18   20   22   25   28   34   37   40   43   45   49 
LCS_GDT     M      75     M      75      9   10   29     7    8    9    9   10   12   13   15   16   18   20   22   25   28   34   37   40   43   45   49 
LCS_GDT     G      76     G      76      9   10   30     7    8    9    9    9   12   14   15   19   21   21   24   26   28   34   37   40   43   45   49 
LCS_GDT     M      77     M      77      9   19   30     5    8    9   12   16   18   18   19   19   21   22   24   26   28   34   37   40   43   45   48 
LCS_GDT     G      78     G      78      9   19   30     3    5    9    9    9   13   18   19   19   20   21   24   26   28   34   37   40   43   45   48 
LCS_GDT     Q      79     Q      79      6   19   30     3    3    7   17   17   18   18   19   19   21   22   24   26   28   34   37   40   43   45   48 
LCS_GDT     E      80     E      80      6   19   30     3    3    8   17   17   18   18   19   19   20   20   23   26   28   34   37   40   43   45   48 
LCS_GDT     D      81     D      81      6   19   30     3    9   13   17   17   18   18   19   19   20   20   23   26   28   34   37   40   43   45   48 
LCS_GDT     V      82     V      82      6   19   30     3    6   11   17   17   18   18   19   19   20   21   24   26   28   34   37   39   43   45   49 
LCS_GDT     S      83     S      83     13   19   30     3    6   11   17   17   18   18   19   19   20   21   24   26   28   34   37   40   43   45   49 
LCS_GDT     A      84     A      84     13   19   30     3   11   13   17   17   18   18   19   19   21   21   24   26   28   34   37   40   43   45   49 
LCS_GDT     L      85     L      85     13   19   30     8   11   13   17   17   18   18   19   19   21   22   24   26   28   34   37   40   43   45   49 
LCS_GDT     R      86     R      86     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   34   37   40   43   45   49 
LCS_GDT     E      87     E      87     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   34   37   40   43   45   49 
LCS_GDT     V      88     V      88     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   34   37   40   43   45   48 
LCS_GDT     G      89     G      89     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   34   37   40   43   45   49 
LCS_GDT     K      90     K      90     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   32   37   40   43   45   48 
LCS_GDT     L      91     L      91     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   32   34   40   43   45   48 
LCS_GDT     L      92     L      92     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   32   33   35   40   44   48 
LCS_GDT     A      93     A      93     13   19   30    10   11   13   17   17   18   18   19   19   20   22   24   26   28   32   33   35   38   42   46 
LCS_GDT     F      94     F      94     13   19   30    10   11   13   17   17   18   18   19   19   20   22   24   26   28   32   33   35   36   40   43 
LCS_GDT     L      95     L      95     13   19   30    10   11   13   17   17   18   18   19   19   21   22   24   26   28   32   33   35   36   38   39 
LCS_GDT     K      96     K      96      3   17   30     3    3    3    5    7    9   14   15   19   21   22   24   26   28   32   33   35   36   38   41 
LCS_GDT     D     314     D     314      3    4   30     3    3    3    4    5    7   10   12   16   16   18   21   24   24   28   32   33   35   40   43 
LCS_GDT     A     315     A     315      4    5   30     3    4    4    4    7    9   14   15   19   21   22   24   26   28   32   33   35   37   40   43 
LCS_GDT     I     316     I     316      4    7   30     3    4    5    6    6   10   14   15   19   21   22   24   26   28   32   33   35   37   40   43 
LCS_GDT     Y     317     Y     317      5    7   30     3    5    5    6   10   12   14   15   19   21   22   24   26   28   32   33   35   36   40   43 
LCS_GDT     H     318     H     318      5    7   30     3    5    5    6    6    9   12   15   19   21   22   24   26   28   32   33   35   36   37   39 
LCS_GDT     S     319     S     319      5    7   30     3    5    5    6    7    9   14   15   19   21   22   24   26   28   32   33   35   36   38   39 
LCS_GDT     T     320     T     320      5    7   30     3    5    5    6    6    9   12   15   19   19   22   24   26   28   32   33   35   36   38   39 
LCS_GDT     Y     321     Y     321      5    7   30     3    5    5    6    7    9   14   15   19   21   22   24   26   28   32   33   35   36   38   39 
LCS_GDT     T     322     T     322      5    7   30     3    3    5    6    7    9   14   15   19   21   22   24   26   28   32   33   35   38   40   45 
LCS_GDT     G     323     G     323      3    7   25     3    3    4    4    5    7    7   10   13   17   20   23   26   26   29   33   35   40   44   48 
LCS_GDT     R     324     R     324      3    7   24     3    3    4    5    5    6    7    7   10   13   17   22   25   28   34   37   40   43   45   48 
LCS_GDT     P     325     P     325      3    7   24     3    3    4    5    5    8    9   11   13   15   19   22   25   25   27   34   39   41   41   48 
LCS_GDT     P     326     P     326      3    7   24     3    4    6    6    8   11   12   16   19   21   21   22   23   23   27   31   39   41   41   44 
LCS_GDT     D     327     D     327      3   16   24     3    4    6    6    9   13   15   17   19   21   21   22   25   25   27   34   39   41   42   47 
LCS_GDT     E     328     E     328     15   20   24     7   12   14   17   18   20   20   20   20   21   21   22   25   27   28   34   39   41   45   48 
LCS_GDT     P     329     P     329     15   20   24     9   13   16   18   19   20   20   20   20   21   24   29   29   31   32   37   40   43   46   48 
LCS_GDT     A     330     A     330     15   20   24     9   13   16   18   19   20   20   20   20   21   21   22   25   30   32   35   40   43   46   48 
LCS_GDT     V     331     V     331     15   20   24     9   13   16   18   19   20   20   20   20   21   21   22   25   27   28   34   39   41   45   48 
LCS_GDT     L     332     L     332     15   20   24     9   13   16   18   19   20   20   20   20   21   22   29   29   31   32   37   40   43   46   47 
LCS_GDT     G     333     G     333     15   20   24     9   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   48 
LCS_GDT     V     334     V     334     15   20   24     9   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   48 
LCS_GDT     A     335     A     335     15   20   24     9   13   16   18   19   20   20   20   20   22   23   29   29   31   32   37   39   41   46   47 
LCS_GDT     L     336     L     336     15   20   24     9   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     N     337     N     337     15   20   24     9   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   48 
LCS_GDT     E     338     E     338     15   20   24     4   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     V     339     V     339     15   20   24     5   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     F     340     F     340     15   20   24     7   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     V     341     V     341     15   20   24     7   13   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     P     342     P     342     15   20   24     7   10   13   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     I     343     I     343     13   20   24     7   10   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     L     344     L     344     13   20   24     7   10   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     Q     345     Q     345     13   20   24     7   10   16   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     K     346     K     346     12   20   24     7   10   13   18   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_GDT     Q     347     Q     347     12   20   24     3    8   12   16   19   20   20   20   20   22   24   29   29   31   32   37   40   43   46   47 
LCS_AVERAGE  LCS_A:  14.54  (   7.18   10.74   25.69 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     16     18     19     20     22     26     28     30     34     37     38     39     42     43     43     44     46     49 
GDT PERCENT_CA   8.06  10.48  12.90  14.52  15.32  16.13  17.74  20.97  22.58  24.19  27.42  29.84  30.65  31.45  33.87  34.68  34.68  35.48  37.10  39.52
GDT RMS_LOCAL    0.19   0.60   1.12   1.31   1.41   1.51   2.53   2.87   3.04   3.18   3.91   4.19   4.42   4.47   4.78   4.90   4.90   5.10   6.46   7.57
GDT RMS_ALL_CA  27.43  28.35  27.50  27.18  26.90  27.25  29.72  29.68  29.41  29.37  30.93  31.17  31.44  31.43  31.07  31.08  31.08  31.10  20.37  19.08

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         23.364
LGA    D       8      D       8         18.085
LGA    L       9      L       9         17.436
LGA    R      10      R      10         15.160
LGA    D      11      D      11         14.784
LGA    F      12      F      12         14.985
LGA    L      13      L      13         13.861
LGA    T      14      T      14         12.002
LGA    L      15      L      15         12.206
LGA    L      16      L      16         12.705
LGA    E      17      E      17         11.567
LGA    Q      18      Q      18         10.614
LGA    Q      19      Q      19         12.026
LGA    G      20      G      20          8.302
LGA    E      21      E      21          8.945
LGA    L      22      L      22          3.111
LGA    K      23      K      23          3.888
LGA    R      24      R      24          3.248
LGA    I      25      I      25          3.763
LGA    T      26      T      26          3.420
LGA    L      27      L      27          3.946
LGA    P      28      P      28          2.463
LGA    V      29      V      29          0.576
LGA    D      30      D      30          2.780
LGA    P      31      P      31          1.744
LGA    H      32      H      32          2.692
LGA    L      33      L      33          3.938
LGA    E      34      E      34          3.995
LGA    I      35      I      35          1.842
LGA    T      36      T      36          2.121
LGA    E      37      E      37          3.004
LGA    I      38      I      38          3.453
LGA    A      39      A      39          3.034
LGA    D      40      D      40          2.254
LGA    R      41      R      41          2.395
LGA    T      42      T      42          3.874
LGA    L      43      L      43          4.443
LGA    R      44      R      44          2.433
LGA    A      45      A      45          1.089
LGA    G      46      G      46          1.976
LGA    G      47      G      47          2.851
LGA    P      48      P      48          4.831
LGA    A      49      A      49          7.654
LGA    L      50      L      50          5.646
LGA    L      51      L      51          4.872
LGA    F      52      F      52          3.787
LGA    E      53      E      53          9.079
LGA    N      54      N      54         12.839
LGA    P      55      P      55         13.870
LGA    K      56      K      56         19.329
LGA    G      57      G      57         18.706
LGA    Y      58      Y      58         15.289
LGA    S      59      S      59         19.458
LGA    M      60      M      60         18.261
LGA    P      61      P      61         18.355
LGA    V      62      V      62         18.569
LGA    L      63      L      63         21.031
LGA    C      64      C      64         21.065
LGA    N      65      N      65         18.695
LGA    L      66      L      66         20.028
LGA    F      67      F      67         18.610
LGA    G      68      G      68         17.512
LGA    T      69      T      69         16.916
LGA    P      70      P      70         22.024
LGA    K      71      K      71         25.630
LGA    R      72      R      72         28.529
LGA    V      73      V      73         27.603
LGA    A      74      A      74         29.023
LGA    M      75      M      75         33.848
LGA    G      76      G      76         35.332
LGA    M      77      M      77         36.214
LGA    G      78      G      78         39.111
LGA    Q      79      Q      79         39.738
LGA    E      80      E      80         39.529
LGA    D      81      D      81         41.492
LGA    V      82      V      82         40.148
LGA    S      83      S      83         40.258
LGA    A      84      A      84         40.335
LGA    L      85      L      85         40.469
LGA    R      86      R      86         42.614
LGA    E      87      E      87         42.558
LGA    V      88      V      88         40.324
LGA    G      89      G      89         41.593
LGA    K      90      K      90         43.564
LGA    L      91      L      91         41.727
LGA    L      92      L      92         40.490
LGA    A      93      A      93         43.079
LGA    F      94      F      94         43.654
LGA    L      95      L      95         41.236
LGA    K      96      K      96         38.060
LGA    D     314      D     314         29.087
LGA    A     315      A     315         26.919
LGA    I     316      I     316         25.845
LGA    Y     317      Y     317         27.772
LGA    H     318      H     318         31.999
LGA    S     319      S     319         30.533
LGA    T     320      T     320         32.092
LGA    Y     321      Y     321         30.698
LGA    T     322      T     322         29.457
LGA    G     323      G     323         24.250
LGA    R     324      R     324         26.483
LGA    P     325      P     325         31.064
LGA    P     326      P     326         31.314
LGA    D     327      D     327         26.734
LGA    E     328      E     328         25.473
LGA    P     329      P     329         27.807
LGA    A     330      A     330         26.677
LGA    V     331      V     331         30.866
LGA    L     332      L     332         35.394
LGA    G     333      G     333         35.767
LGA    V     334      V     334         36.131
LGA    A     335      A     335         41.827
LGA    L     336      L     336         44.611
LGA    N     337      N     337         43.860
LGA    E     338      E     338         47.213
LGA    V     339      V     339         52.991
LGA    F     340      F     340         53.496
LGA    V     341      V     341         53.257
LGA    P     342      P     342         59.517
LGA    I     343      I     343         62.328
LGA    L     344      L     344         60.226
LGA    Q     345      Q     345         62.453
LGA    K     346      K     346         68.981
LGA    Q     347      Q     347         69.675

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     26    2.87    20.161    17.936     0.875

LGA_LOCAL      RMSD =  2.872  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 29.480  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 14.556  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.703617 * X  +  -0.222899 * Y  +  -0.674714 * Z  +  51.834835
  Y_new =   0.645205 * X  +  -0.598234 * Y  +  -0.475211 * Z  +  57.783806
  Z_new =  -0.297713 * X  +  -0.769696 * Y  +   0.564743 * Z  + 107.942886 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.937794    2.203798  [ DEG:   -53.7317    126.2683 ]
  Theta =   0.302296    2.839297  [ DEG:    17.3203    162.6797 ]
  Phi   =   2.399473   -0.742119  [ DEG:   137.4797    -42.5203 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS168_2-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS168_2-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   26   2.87  17.936    14.56
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS168_2-D1
PFRMAT TS
TARGET T0356
MODEL 2
PARENT N/A
ATOM      7  CA  ASN     7      73.072  69.997 100.880  1.00 25.00           C
ATOM      8  CA  ASP     8      70.191  70.316  98.377  1.00 25.00           C
ATOM      9  CA  LEU     9      67.974  71.865 101.089  1.00 25.00           C
ATOM     10  CA  ARG    10      70.750  74.351 101.974  1.00 25.00           C
ATOM     11  CA  ASP    11      71.128  75.282  98.278  1.00 25.00           C
ATOM     12  CA  PHE    12      67.346  75.815  97.999  1.00 25.00           C
ATOM     13  CA  LEU    13      67.406  78.042 101.115  1.00 25.00           C
ATOM     14  CA  THR    14      70.293  80.077  99.635  1.00 25.00           C
ATOM     15  CA  LEU    15      68.355  80.487  96.356  1.00 25.00           C
ATOM     16  CA  LEU    16      65.267  81.652  98.298  1.00 25.00           C
ATOM     17  CA  GLU    17      67.402  84.181 100.225  1.00 25.00           C
ATOM     18  CA  GLN    18      68.875  85.480  96.937  1.00 25.00           C
ATOM     19  CA  GLN    19      66.294  88.078  96.045  1.00 25.00           C
ATOM     20  CA  GLY    20      65.377  86.866  92.547  1.00 25.00           C
ATOM     21  CA  GLU    21      64.481  83.339  93.631  1.00 25.00           C
ATOM     22  CA  LEU    22      62.861  80.189  92.183  1.00 25.00           C
ATOM     23  CA  LYS    23      62.968  77.986  95.205  1.00 25.00           C
ATOM     24  CA  ARG    24      62.260  75.361  97.793  1.00 25.00           C
ATOM     25  CA  ILE    25      61.606  72.003  99.418  1.00 25.00           C
ATOM     26  CA  THR    26      60.541  73.277 102.838  1.00 25.00           C
ATOM     27  CA  LEU    27      61.755  71.166 105.775  1.00 25.00           C
ATOM     28  CA  PRO    28      59.004  68.924 104.454  1.00 25.00           C
ATOM     29  CA  VAL    29      60.899  67.487 101.486  1.00 25.00           C
ATOM     30  CA  ASP    30      63.912  65.258 101.882  1.00 25.00           C
ATOM     31  CA  PRO    31      63.673  64.906  98.119  1.00 25.00           C
ATOM     32  CA  HIS    32      61.498  62.191  96.518  1.00 25.00           C
ATOM     33  CA  LEU    33      58.345  63.872  97.895  1.00 25.00           C
ATOM     34  CA  GLU    34      59.499  67.243  96.492  1.00 25.00           C
ATOM     35  CA  ILE    35      60.135  65.631  93.076  1.00 25.00           C
ATOM     36  CA  THR    36      56.643  64.059  93.140  1.00 25.00           C
ATOM     37  CA  GLU    37      55.102  67.457  94.006  1.00 25.00           C
ATOM     38  CA  ILE    38      57.013  69.088  91.116  1.00 25.00           C
ATOM     39  CA  ALA    39      55.774  66.363  88.727  1.00 25.00           C
ATOM     40  CA  ASP    40      52.177  66.918  89.921  1.00 25.00           C
ATOM     41  CA  ARG    41      52.549  70.690  89.369  1.00 25.00           C
ATOM     42  CA  THR    42      53.899  70.065  85.841  1.00 25.00           C
ATOM     43  CA  LEU    43      50.942  67.749  85.092  1.00 25.00           C
ATOM     44  CA  ARG    44      48.503  70.418  86.355  1.00 25.00           C
ATOM     45  CA  ALA    45      50.110  73.397  84.684  1.00 25.00           C
ATOM     46  CA  GLY    46      53.486  75.144  85.212  1.00 25.00           C
ATOM     47  CA  GLY    47      51.839  75.820  88.637  1.00 25.00           C
ATOM     48  CA  PRO    48      54.176  77.989  90.782  1.00 25.00           C
ATOM     49  CA  ALA    49      55.022  74.785  92.707  1.00 25.00           C
ATOM     50  CA  LEU    50      57.370  74.244  95.624  1.00 25.00           C
ATOM     51  CA  LEU    51      60.154  71.896  94.503  1.00 25.00           C
ATOM     52  CA  PHE    52      63.119  69.491  94.779  1.00 25.00           C
ATOM     53  CA  GLU    53      65.568  67.007  93.276  1.00 25.00           C
ATOM     54  CA  ASN    54      64.487  68.257  89.810  1.00 25.00           C
ATOM     55  CA  PRO    55      66.716  66.645  87.163  1.00 25.00           C
ATOM     56  CA  LYS    56      66.441  63.825  84.630  1.00 25.00           C
ATOM     57  CA  GLY    57      63.844  62.011  86.649  1.00 25.00           C
ATOM     58  CA  TYR    58      63.056  60.526  90.020  1.00 25.00           C
ATOM     59  CA  SER    59      62.600  56.832  90.813  1.00 25.00           C
ATOM     60  CA  MET    60      59.560  57.703  92.929  1.00 25.00           C
ATOM     61  CA  PRO    61      60.720  55.441  95.695  1.00 25.00           C
ATOM     62  CA  VAL    62      60.661  52.893  98.576  1.00 25.00           C
ATOM     63  CA  LEU    63      57.206  54.448  99.141  1.00 25.00           C
ATOM     64  CA  CYS    64      53.819  55.711 100.459  1.00 25.00           C
ATOM     65  CA  ASN    65      53.425  58.425  97.865  1.00 25.00           C
ATOM     66  CA  LEU    66      52.635  59.508  94.245  1.00 25.00           C
ATOM     67  CA  PHE    67      54.258  59.029  90.804  1.00 25.00           C
ATOM     68  CA  GLY    68      51.201  57.862  88.976  1.00 25.00           C
ATOM     69  CA  THR    69      50.740  61.567  88.048  1.00 25.00           C
ATOM     70  CA  PRO    70      48.947  62.113  91.357  1.00 25.00           C
ATOM     71  CA  LYS    71      45.942  60.542  89.575  1.00 25.00           C
ATOM     72  CA  ARG    72      44.346  59.704  92.955  1.00 25.00           C
ATOM     73  CA  VAL    73      44.898  63.305  94.135  1.00 25.00           C
ATOM     74  CA  ALA    74      43.295  64.632  90.920  1.00 25.00           C
ATOM     75  CA  MET    75      40.293  62.309  91.429  1.00 25.00           C
ATOM     76  CA  GLY    76      39.931  63.528  95.042  1.00 25.00           C
ATOM     77  CA  MET    77      40.051  67.167  93.852  1.00 25.00           C
ATOM     78  CA  GLY    78      36.847  68.264  92.118  1.00 25.00           C
ATOM     79  CA  GLN    79      35.145  70.338  94.733  1.00 25.00           C
ATOM     80  CA  GLU    80      31.432  70.927  95.179  1.00 25.00           C
ATOM     81  CA  ASP    81      27.835  69.648  94.854  1.00 25.00           C
ATOM     82  CA  VAL    82      28.015  65.970  93.837  1.00 25.00           C
ATOM     83  CA  SER    83      27.728  66.368  90.038  1.00 25.00           C
ATOM     84  CA  ALA    84      31.078  68.224  89.957  1.00 25.00           C
ATOM     85  CA  LEU    85      32.701  65.436  92.021  1.00 25.00           C
ATOM     86  CA  ARG    86      31.287  62.804  89.623  1.00 25.00           C
ATOM     87  CA  GLU    87      32.655  64.762  86.630  1.00 25.00           C
ATOM     88  CA  VAL    88      36.094  64.970  88.304  1.00 25.00           C
ATOM     89  CA  GLY    89      36.032  61.196  88.954  1.00 25.00           C
ATOM     90  CA  LYS    90      35.115  60.555  85.291  1.00 25.00           C
ATOM     91  CA  LEU    91      37.996  62.807  84.151  1.00 25.00           C
ATOM     92  CA  LEU    92      40.411  60.922  86.447  1.00 25.00           C
ATOM     93  CA  ALA    93      39.191  57.580  85.027  1.00 25.00           C
ATOM     94  CA  PHE    94      39.700  58.882  81.462  1.00 25.00           C
ATOM     95  CA  LEU    95      43.242  60.028  82.357  1.00 25.00           C
ATOM     96  CA  LYS    96      44.031  61.767  79.002  1.00 25.00           C
ATOM    314  CA  ASP   314      61.604  52.872 107.202  1.00 25.00           C
ATOM    315  CA  ALA   315      59.917  56.216 106.996  1.00 25.00           C
ATOM    316  CA  ILE   316      56.330  57.479 106.736  1.00 25.00           C
ATOM    317  CA  TYR   317      54.764  55.596 109.601  1.00 25.00           C
ATOM    318  CA  HIS   318      52.796  52.471 110.301  1.00 25.00           C
ATOM    319  CA  SER   319      52.258  49.063 108.735  1.00 25.00           C
ATOM    320  CA  THR   320      51.351  45.361 108.442  1.00 25.00           C
ATOM    321  CA  TYR   321      49.010  43.100 106.392  1.00 25.00           C
ATOM    322  CA  THR   322      48.050  41.599 103.063  1.00 25.00           C
ATOM    323  CA  GLY   323      50.228  42.137 100.027  1.00 25.00           C
ATOM    324  CA  ARG   324      53.498  42.129 101.985  1.00 25.00           C
ATOM    325  CA  PRO   325      57.236  41.856 102.535  1.00 25.00           C
ATOM    326  CA  PRO   326      60.227  43.827 101.329  1.00 25.00           C
ATOM    327  CA  ASP   327      61.045  47.551 100.932  1.00 25.00           C
ATOM    328  CA  GLU   328      59.097  50.755 101.421  1.00 25.00           C
ATOM    329  CA  PRO   329      56.776  53.085 103.385  1.00 25.00           C
ATOM    330  CA  ALA   330      54.288  53.099 100.474  1.00 25.00           C
ATOM    331  CA  VAL   331      54.389  49.273 100.336  1.00 25.00           C
ATOM    332  CA  LEU   332      53.759  49.096 104.108  1.00 25.00           C
ATOM    333  CA  GLY   333      50.792  51.492 103.751  1.00 25.00           C
ATOM    334  CA  VAL   334      49.370  49.345 100.916  1.00 25.00           C
ATOM    335  CA  ALA   335      49.746  46.203 103.073  1.00 25.00           C
ATOM    336  CA  LEU   336      47.954  47.949 105.972  1.00 25.00           C
ATOM    337  CA  ASN   337      45.117  48.994 103.623  1.00 25.00           C
ATOM    338  CA  GLU   338      44.810  45.393 102.353  1.00 25.00           C
ATOM    339  CA  VAL   339      44.671  44.108 105.958  1.00 25.00           C
ATOM    340  CA  PHE   340      41.942  46.663 106.789  1.00 25.00           C
ATOM    341  CA  VAL   341      39.945  45.570 103.710  1.00 25.00           C
ATOM    342  CA  PRO   342      40.284  41.903 104.762  1.00 25.00           C
ATOM    343  CA  ILE   343      39.079  42.778 108.290  1.00 25.00           C
ATOM    344  CA  LEU   344      36.075  44.650 106.827  1.00 25.00           C
ATOM    345  CA  GLN   345      35.240  41.633 104.621  1.00 25.00           C
ATOM    346  CA  LYS   346      35.450  39.317 107.664  1.00 25.00           C
ATOM    347  CA  GLN   347      33.129  41.647 109.628  1.00 25.00           C
TER
END
