
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS168_3-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS168_3-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        22 - 48          4.95    32.90
  LCS_AVERAGE:     18.82

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       327 - 346         1.99    25.42
  LONGEST_CONTINUOUS_SEGMENT:    20       328 - 347         1.51    25.96
  LCS_AVERAGE:     10.31

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       328 - 342         0.98    25.83
  LCS_AVERAGE:      7.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   12   19     0    3    4    5    7   10   13   13   15   17   19   22   26   27   28   32   34   34   34   37 
LCS_GDT     D       8     D       8     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   31   32   34   34   36   39 
LCS_GDT     L       9     L       9     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   31   32   34   34   39   40 
LCS_GDT     R      10     R      10     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     D      11     D      11     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     F      12     F      12     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     L      13     L      13     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     T      14     T      14     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     L      15     L      15     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     L      16     L      16     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   40   46 
LCS_GDT     E      17     E      17     11   13   19    10   11   12   12   12   14   15   17   18   20   23   25   28   30   33   36   38   40   43   48 
LCS_GDT     Q      18     Q      18     11   13   19    10   11   12   12   12   14   15   15   16   20   23   25   28   30   32   34   38   40   41   48 
LCS_GDT     Q      19     Q      19      3   13   19     3    4    4    6    9   14   14   17   18   20   23   25   28   30   33   36   38   40   41   46 
LCS_GDT     G      20     G      20      3   13   19     3    4    6    8   12   14   15   17   18   20   23   25   28   30   33   36   38   40   43   48 
LCS_GDT     E      21     E      21      3    6   19     3    4    4    6    6   10   14   15   16   19   21   25   28   30   33   36   38   40   41   48 
LCS_GDT     L      22     L      22      4    6   27     0    3    4    5   10   11   14   15   16   16   18   19   21   29   33   36   38   40   40   46 
LCS_GDT     K      23     K      23      4    8   27     1    3    5    6    8   11   14   16   18   20   23   25   28   33   40   43   45   47   48   49 
LCS_GDT     R      24     R      24      4    8   27     3    3    4    6    9   13   14   24   29   33   34   37   38   41   42   44   45   47   48   51 
LCS_GDT     I      25     I      25      4    8   27     3    5    7   10   16   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     T      26     T      26      3    8   27     3    3    4   10   16   20   25   29   32   33   37   37   40   41   42   44   45   49   49   51 
LCS_GDT     L      27     L      27      4    8   27     3    4    6    7   15   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     P      28     P      28      4    8   27     3    5    7   10   16   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     V      29     V      29      4   17   27     3    4   10   14   16   18   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     D      30     D      30      4   17   27     3    4    6   12   16   16   20   28   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     P      31     P      31      3   17   27     3    3    4    7   14   15   17   18   20   28   32   38   40   41   42   44   46   49   49   51 
LCS_GDT     H      32     H      32     14   17   27     3    3   11   13   16   16   16   18   20   20   22   26   33   40   41   44   46   49   49   51 
LCS_GDT     L      33     L      33     14   17   27     9   12   12   14   16   16   16   18   20   20   21   23   26   29   33   36   44   46   48   50 
LCS_GDT     E      34     E      34     14   17   27     6   12   12   14   16   16   16   18   20   20   21   26   31   35   39   43   46   49   49   51 
LCS_GDT     I      35     I      35     14   17   27     9   12   12   14   16   16   16   18   20   20   21   24   28   34   39   44   46   49   49   51 
LCS_GDT     T      36     T      36     14   17   27     9   12   12   14   16   16   16   18   20   20   21   25   28   30   33   36   38   40   42   48 
LCS_GDT     E      37     E      37     14   17   27     9   12   12   14   16   16   16   18   20   20   21   25   28   30   33   36   38   40   40   45 
LCS_GDT     I      38     I      38     14   17   27     9   12   12   14   16   16   16   18   20   20   21   25   28   30   33   36   38   40   41   43 
LCS_GDT     A      39     A      39     14   17   27     9   12   12   14   16   16   16   18   20   20   21   25   28   30   33   36   38   40   40   43 
LCS_GDT     D      40     D      40     14   17   27     9   12   12   14   16   16   16   18   20   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     R      41     R      41     14   17   27     9   12   12   14   16   16   16   18   20   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     T      42     T      42     14   17   27     9   12   12   14   16   16   16   18   20   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     L      43     L      43     14   17   27     7   12   12   14   16   16   16   18   20   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     R      44     R      44     14   17   27     6   12   12   14   16   16   16   18   20   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     A      45     A      45     14   17   27     3    6   12   14   16   16   16   18   20   20   23   25   28   30   33   36   38   40   40   43 
LCS_GDT     G      46     G      46      3    8   27     3    3    5    7    9   13   14   18   20   20   21   25   28   30   33   36   38   40   40   43 
LCS_GDT     G      47     G      47      3    8   27     3    4    5    7    9   13   14   18   20   20   23   25   28   30   33   36   38   40   43   48 
LCS_GDT     P      48     P      48      4    8   27     3    4    5    6    8   10   13   15   17   19   21   25   28   30   33   36   38   41   46   49 
LCS_GDT     A      49     A      49      4    8   26     3    4    5    6    8   10   13   15   18   19   23   25   28   30   32   36   45   47   47   51 
LCS_GDT     L      50     L      50      4    8   26     3    4    6    7    9   11   13   22   26   33   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     L      51     L      51      4    8   26     3    5    7   10   16   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     F      52     F      52      3    7   26     1    3    5    5    7   10   13   22   29   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     E      53     E      53      3    7   26     1    3    5    7    8    9   12   15   17   19   21   30   38   39   41   44   46   48   49   51 
LCS_GDT     N      54     N      54      5    7   26     0    4    5    7    8    9   11   15   17   19   23   30   38   39   41   44   46   48   49   51 
LCS_GDT     P      55     P      55      5    7   26     3    4    5    7    8   15   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     K      56     K      56      5    9   24     3    4    6   10   16   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     G      57     G      57      5    9   24     3    4    6    7   16   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     Y      58     Y      58      5    9   24     3    4    6    9   16   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     S      59     S      59      4    9   17     3    4    6    7    8   16   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     M      60     M      60      4    9   17     3    4    6    7    9   18   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     P      61     P      61      3    9   19     3    3    6    7    8   10   12   22   27   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     V      62     V      62      3    9   19     3    3    6    7    8   10   16   22   29   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     L      63     L      63      3    9   19     3    3    6    7    8    9   12   14   18   22   34   38   40   40   42   44   46   49   49   51 
LCS_GDT     C      64     C      64      3    9   19     1    3    4    6    8    8   11   12   13   17   20   21   26   34   39   44   46   49   49   51 
LCS_GDT     N      65     N      65      3    5   19     3    3    3    5    6    7    8   10   13   17   20   21   26   28   29   32   35   38   41   46 
LCS_GDT     L      66     L      66      3    5   19     3    3    3    5    6    8   10   11   13   17   20   21   26   28   29   32   35   38   41   43 
LCS_GDT     F      67     F      67      4    5   19     3    4    4    4    5    6    8   10   13   17   20   21   26   28   29   32   35   38   43   48 
LCS_GDT     G      68     G      68      4   11   19     3    4    4    6    8   10   11   11   13   17   20   21   25   26   29   32   35   38   41   48 
LCS_GDT     T      69     T      69      9   11   19     3    4    7    9    9   10   11   11   13   17   20   21   26   28   29   32   35   38   39   42 
LCS_GDT     P      70     P      70      9   11   19     8    8    8    9    9   10   11   11   13   17   20   21   26   28   29   32   35   38   41   46 
LCS_GDT     K      71     K      71      9   11   19     8    8    8    9    9   10   11   11   11   14   16   18   21   22   25   28   34   38   41   44 
LCS_GDT     R      72     R      72      9   11   19     8    8    8    9    9   10   11   11   13   17   20   20   23   26   29   32   35   38   43   48 
LCS_GDT     V      73     V      73      9   11   19     8    8    8    9    9   10   11   11   13   17   20   20   23   26   29   32   35   38   43   48 
LCS_GDT     A      74     A      74      9   11   19     8    8    8    9    9   10   11   11   13   17   20   20   22   26   29   32   35   38   41   48 
LCS_GDT     M      75     M      75      9   11   22     8    8    8    9    9   10   11   11   13   17   20   20   23   27   29   32   35   38   43   48 
LCS_GDT     G      76     G      76      9   11   22     8    8    8    9    9   10   11   14   18   19   21   23   25   27   29   32   35   38   43   48 
LCS_GDT     M      77     M      77      9   11   22     8    8    8    9    9   11   13   15   18   19   21   23   25   27   29   32   35   38   41   46 
LCS_GDT     G      78     G      78      3   11   22     3    3    4    6   10   14   17   18   18   19   21   23   25   27   29   32   35   38   41   44 
LCS_GDT     Q      79     Q      79      4    7   22     0    3    5    6    9   14   17   18   18   19   21   23   25   27   29   32   35   38   41   48 
LCS_GDT     E      80     E      80      4    7   22     3    3    4    6    8   10   12   14   18   19   21   23   25   27   29   32   35   38   41   47 
LCS_GDT     D      81     D      81      4   15   22     3    3    4    6   10   14   17   18   18   19   21   24   24   27   28   31   35   38   43   48 
LCS_GDT     V      82     V      82      5   15   22     4    4   10   14   14   14   17   18   18   19   21   24   24   27   27   31   35   38   43   48 
LCS_GDT     S      83     S      83     13   15   22     4    4   10   14   14   14   17   18   18   19   21   24   24   27   29   32   35   38   43   48 
LCS_GDT     A      84     A      84     13   15   22     4   11   12   14   14   14   17   18   18   19   19   20   23   26   29   32   35   38   43   48 
LCS_GDT     L      85     L      85     13   15   22     8   11   12   14   14   14   17   18   18   19   19   20   23   26   29   32   35   38   43   48 
LCS_GDT     R      86     R      86     13   15   22    10   11   12   14   14   14   17   18   18   19   20   20   23   26   29   32   35   38   43   48 
LCS_GDT     E      87     E      87     13   15   22    10   11   12   14   14   14   17   18   18   19   20   20   23   26   29   32   35   38   43   48 
LCS_GDT     V      88     V      88     13   15   22    10   11   12   14   14   14   17   18   18   19   20   20   23   26   29   32   35   38   43   48 
LCS_GDT     G      89     G      89     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   23   26   29   32   35   38   43   48 
LCS_GDT     K      90     K      90     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   22   26   29   32   35   38   43   48 
LCS_GDT     L      91     L      91     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   21   24   29   32   35   38   41   48 
LCS_GDT     L      92     L      92     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   21   25   29   32   35   38   43   48 
LCS_GDT     A      93     A      93     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   21   25   29   32   35   38   43   48 
LCS_GDT     F      94     F      94     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   20   23   26   28   33   37   41   46 
LCS_GDT     L      95     L      95     13   15   22    10   11   12   14   14   14   17   18   18   19   19   20   20   22   26   28   33   36   41   46 
LCS_GDT     K      96     K      96      3   15   22     3    3    3    8   11   14   17   18   18   19   19   20   20   22   24   27   31   35   39   42 
LCS_GDT     D     314     D     314      3    4   19     0    2    3    3    4    4    5    7    8   12   15   17   18   20   25   26   31   35   39   43 
LCS_GDT     A     315     A     315      3    7   21     0    2    3    5    6    7   10   11   13   14   15   17   20   21   25   26   28   32   36   41 
LCS_GDT     I     316     I     316      6    7   21     0    5    5    6    7    8    9    9   12   13   16   17   20   21   24   25   27   29   29   30 
LCS_GDT     Y     317     Y     317      6    7   21     0    5    5    6    7    8    9    9   12   13   16   17   20   21   24   26   27   29   29   31 
LCS_GDT     H     318     H     318      6    7   21     3    5    5    6    6    8    9    9   12   13   16   17   20   21   24   26   27   29   29   36 
LCS_GDT     S     319     S     319      6    7   21     3    5    5    6    7    8    9   11   12   13   16   17   20   21   24   26   27   29   29   31 
LCS_GDT     T     320     T     320      6    7   21     3    5    5    6    7    8    9   11   12   13   16   17   20   21   41   43   45   46   49   51 
LCS_GDT     Y     321     Y     321      6    7   21     3    5    5    6    7    8    9   11   11   13   16   21   30   38   41   43   46   49   49   51 
LCS_GDT     T     322     T     322      4    7   26     3    4    4    6    7    7   11   14   15   17   20   22   31   38   41   44   46   49   49   51 
LCS_GDT     G     323     G     323      4    7   26     3    4    6    7    9   11   12   14   16   19   21   26   31   35   41   44   46   49   49   51 
LCS_GDT     R     324     R     324      4    7   26     3    4    5    7    9   11   12   14   18   19   22   24   31   32   36   42   45   46   49   51 
LCS_GDT     P     325     P     325      3    7   26     3    3    4    6    7    7   10   14   16   20   24   26   32   35   39   44   46   49   49   51 
LCS_GDT     P     326     P     326      3    7   26     3    5    5    6    7    8   10   13   16   22   34   38   40   41   42   44   46   49   49   51 
LCS_GDT     D     327     D     327      3   20   26     3    3    4    6   12   16   24   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     E     328     E     328     15   20   26     7   12   14   18   18   20   20   21   26   33   37   37   40   41   42   44   46   49   49   51 
LCS_GDT     P     329     P     329     15   20   26     9   13   16   18   19   20   24   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     A     330     A     330     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     V     331     V     331     15   20   26     9   13   16   18   19   20   23   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     L     332     L     332     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     G     333     G     333     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     V     334     V     334     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     A     335     A     335     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     L     336     L     336     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     N     337     N     337     15   20   26     9   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     E     338     E     338     15   20   26     4   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     V     339     V     339     15   20   26     5   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     F     340     F     340     15   20   26     7   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     V     341     V     341     15   20   26     7   13   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     P     342     P     342     15   20   26     7   10   13   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     I     343     I     343     13   20   26     7   10   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     L     344     L     344     13   20   26     7   10   16   18   19   20   22   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     Q     345     Q     345     13   20   26     7   10   16   18   19   20   25   29   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     K     346     K     346     12   20   26     7   10   13   18   19   20   20   28   32   34   37   38   40   41   42   44   46   49   49   51 
LCS_GDT     Q     347     Q     347     12   20   26     3    8   13   16   19   20   20   20   21   25   26   36   39   41   42   44   46   49   49   51 
LCS_AVERAGE  LCS_A:  12.05  (   7.01   10.31   18.82 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     16     18     19     20     25     29     32     34     37     38     40     41     42     44     46     49     49     51 
GDT PERCENT_CA   8.06  10.48  12.90  14.52  15.32  16.13  20.16  23.39  25.81  27.42  29.84  30.65  32.26  33.06  33.87  35.48  37.10  39.52  39.52  41.13
GDT RMS_LOCAL    0.19   0.60   1.12   1.31   1.41   1.51   2.42   2.68   2.94   3.21   3.40   3.74   3.82   3.97   4.07   5.04   5.04   5.40   5.28   5.61
GDT RMS_ALL_CA  32.42  25.90  25.56  25.56  25.86  25.96  23.65  23.75  23.57  23.68  23.64  23.65  23.63  23.35  23.34  23.61  24.00  23.67  23.74  23.84

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         34.683
LGA    D       8      D       8         31.238
LGA    L       9      L       9         24.314
LGA    R      10      R      10         26.368
LGA    D      11      D      11         30.668
LGA    F      12      F      12         26.338
LGA    L      13      L      13         21.354
LGA    T      14      T      14         25.989
LGA    L      15      L      15         29.123
LGA    L      16      L      16         23.846
LGA    E      17      E      17         21.519
LGA    Q      18      Q      18         27.605
LGA    Q      19      Q      19         28.243
LGA    G      20      G      20         22.618
LGA    E      21      E      21         21.120
LGA    L      22      L      22         17.233
LGA    K      23      K      23         10.759
LGA    R      24      R      24          7.274
LGA    I      25      I      25          1.885
LGA    T      26      T      26          3.631
LGA    L      27      L      27          2.529
LGA    P      28      P      28          0.496
LGA    V      29      V      29          3.248
LGA    D      30      D      30          4.366
LGA    P      31      P      31          7.644
LGA    H      32      H      32         10.209
LGA    L      33      L      33         14.263
LGA    E      34      E      34         13.227
LGA    I      35      I      35         11.802
LGA    T      36      T      36         17.249
LGA    E      37      E      37         20.107
LGA    I      38      I      38         17.764
LGA    A      39      A      39         20.935
LGA    D      40      D      40         26.261
LGA    R      41      R      41         26.844
LGA    T      42      T      42         25.902
LGA    L      43      L      43         30.908
LGA    R      44      R      44         34.570
LGA    A      45      A      45         32.476
LGA    G      46      G      46         28.188
LGA    G      47      G      47         21.531
LGA    P      48      P      48         15.369
LGA    A      49      A      49         11.840
LGA    L      50      L      50          6.002
LGA    L      51      L      51          1.503
LGA    F      52      F      52          4.692
LGA    E      53      E      53          7.739
LGA    N      54      N      54          8.030
LGA    P      55      P      55          3.482
LGA    K      56      K      56          2.013
LGA    G      57      G      57          2.478
LGA    Y      58      Y      58          1.958
LGA    S      59      S      59          3.401
LGA    M      60      M      60          3.387
LGA    P      61      P      61          5.579
LGA    V      62      V      62          5.168
LGA    L      63      L      63          7.178
LGA    C      64      C      64         10.736
LGA    N      65      N      65         16.846
LGA    L      66      L      66         18.080
LGA    F      67      F      67         20.842
LGA    G      68      G      68         26.175
LGA    T      69      T      69         28.032
LGA    P      70      P      70         27.943
LGA    K      71      K      71         24.648
LGA    R      72      R      72         24.498
LGA    V      73      V      73         26.331
LGA    A      74      A      74         23.912
LGA    M      75      M      75         22.930
LGA    G      76      G      76         25.418
LGA    M      77      M      77         25.866
LGA    G      78      G      78         26.857
LGA    Q      79      Q      79         30.616
LGA    E      80      E      80         30.844
LGA    D      81      D      81         36.694
LGA    V      82      V      82         41.927
LGA    S      83      S      83         46.011
LGA    A      84      A      84         42.210
LGA    L      85      L      85         42.361
LGA    R      86      R      86         48.745
LGA    E      87      E      87         47.479
LGA    V      88      V      88         43.164
LGA    G      89      G      89         47.893
LGA    K      90      K      90         51.806
LGA    L      91      L      91         47.347
LGA    L      92      L      92         46.233
LGA    A      93      A      93         52.644
LGA    F      94      F      94         52.898
LGA    L      95      L      95         47.516
LGA    K      96      K      96         51.052
LGA    D     314      D     314         19.623
LGA    A     315      A     315         19.918
LGA    I     316      I     316         22.282
LGA    Y     317      Y     317         19.487
LGA    H     318      H     318         15.720
LGA    S     319      S     319         14.931
LGA    T     320      T     320         11.282
LGA    Y     321      Y     321          8.990
LGA    T     322      T     322         10.213
LGA    G     323      G     323         12.105
LGA    R     324      R     324         15.526
LGA    P     325      P     325         12.544
LGA    P     326      P     326          7.585
LGA    D     327      D     327          3.702
LGA    E     328      E     328          5.314
LGA    P     329      P     329          3.535
LGA    A     330      A     330          2.995
LGA    V     331      V     331          3.962
LGA    L     332      L     332          3.163
LGA    G     333      G     333          1.773
LGA    V     334      V     334          3.245
LGA    A     335      A     335          3.218
LGA    L     336      L     336          1.484
LGA    N     337      N     337          2.176
LGA    E     338      E     338          3.130
LGA    V     339      V     339          1.512
LGA    F     340      F     340          1.460
LGA    V     341      V     341          2.490
LGA    P     342      P     342          1.706
LGA    I     343      I     343          3.426
LGA    L     344      L     344          4.306
LGA    Q     345      Q     345          3.190
LGA    K     346      K     346          4.972
LGA    Q     347      Q     347          7.942

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     29    2.68    20.968    18.699     1.041

LGA_LOCAL      RMSD =  2.684  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.637  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 18.168  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.218644 * X  +  -0.940468 * Y  +   0.260222 * Z  +  65.690308
  Y_new =  -0.928023 * X  +  -0.117982 * Y  +   0.353348 * Z  +  76.044769
  Z_new =  -0.301610 * X  +  -0.318749 * Y  +  -0.898571 * Z  +  81.750954 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.800711    0.340881  [ DEG:  -160.4689     19.5311 ]
  Theta =   0.306381    2.835212  [ DEG:    17.5544    162.4456 ]
  Phi   =  -1.339414    1.802179  [ DEG:   -76.7427    103.2573 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS168_3-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS168_3-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   29   2.68  18.699    18.17
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS168_3-D1
PFRMAT TS
TARGET T0356
MODEL 3
PARENT N/A
ATOM      7  CA  ASN     7      46.918  69.243  93.974  1.00 25.00           C
ATOM      8  CA  ASP     8      49.588  67.132  95.729  1.00 25.00           C
ATOM      9  CA  LEU     9      52.044  70.065  95.574  1.00 25.00           C
ATOM     10  CA  ARG    10      49.390  72.398  97.051  1.00 25.00           C
ATOM     11  CA  ASP    11      48.725  69.893  99.872  1.00 25.00           C
ATOM     12  CA  PHE    12      52.480  69.671 100.593  1.00 25.00           C
ATOM     13  CA  LEU    13      52.710  73.491 100.701  1.00 25.00           C
ATOM     14  CA  THR    14      49.744  73.628 103.121  1.00 25.00           C
ATOM     15  CA  LEU    15      51.413  70.999 105.351  1.00 25.00           C
ATOM     16  CA  LEU    16      54.669  73.016 105.336  1.00 25.00           C
ATOM     17  CA  GLU    17      52.739  76.184 106.289  1.00 25.00           C
ATOM     18  CA  GLN    18      51.023  74.306 109.152  1.00 25.00           C
ATOM     19  CA  GLN    19      49.192  77.578 109.736  1.00 25.00           C
ATOM     20  CA  GLY    20      51.605  80.432 109.245  1.00 25.00           C
ATOM     21  CA  GLU    21      50.616  80.692 105.593  1.00 25.00           C
ATOM     22  CA  LEU    22      49.719  82.153 102.138  1.00 25.00           C
ATOM     23  CA  LYS    23      52.788  80.183 100.960  1.00 25.00           C
ATOM     24  CA  ARG    24      55.609  77.977  99.787  1.00 25.00           C
ATOM     25  CA  ILE    25      58.728  75.915  99.029  1.00 25.00           C
ATOM     26  CA  THR    26      58.898  75.380 102.784  1.00 25.00           C
ATOM     27  CA  LEU    27      59.658  73.098 105.760  1.00 25.00           C
ATOM     28  CA  PRO    28      60.763  69.835 104.303  1.00 25.00           C
ATOM     29  CA  VAL    29      58.946  70.606 101.111  1.00 25.00           C
ATOM     30  CA  ASP    30      60.089  67.857  98.768  1.00 25.00           C
ATOM     31  CA  PRO    31      61.889  70.841  97.248  1.00 25.00           C
ATOM     32  CA  HIS    32      64.871  69.539  99.269  1.00 25.00           C
ATOM     33  CA  LEU    33      67.246  71.752  97.235  1.00 25.00           C
ATOM     34  CA  GLU    34      64.991  74.785  97.856  1.00 25.00           C
ATOM     35  CA  ILE    35      64.951  74.018 101.608  1.00 25.00           C
ATOM     36  CA  THR    36      68.772  73.751 101.618  1.00 25.00           C
ATOM     37  CA  GLU    37      69.037  77.109  99.797  1.00 25.00           C
ATOM     38  CA  ILE    38      66.676  78.710 102.354  1.00 25.00           C
ATOM     39  CA  ALA    39      68.783  77.295 105.222  1.00 25.00           C
ATOM     40  CA  ASP    40      71.964  78.685 103.604  1.00 25.00           C
ATOM     41  CA  ARG    41      70.303  82.116 103.233  1.00 25.00           C
ATOM     42  CA  THR    42      69.251  82.033 106.914  1.00 25.00           C
ATOM     43  CA  LEU    43      72.829  81.130 107.941  1.00 25.00           C
ATOM     44  CA  ARG    44      74.190  84.026 105.837  1.00 25.00           C
ATOM     45  CA  ALA    45      71.364  86.568 105.521  1.00 25.00           C
ATOM     46  CA  GLY    46      67.680  86.277 104.695  1.00 25.00           C
ATOM     47  CA  GLY    47      65.269  83.464 103.833  1.00 25.00           C
ATOM     48  CA  PRO    48      63.632  82.994 100.471  1.00 25.00           C
ATOM     49  CA  ALA    49      64.571  80.299  97.980  1.00 25.00           C
ATOM     50  CA  LEU    50      63.431  78.540  94.841  1.00 25.00           C
ATOM     51  CA  LEU    51      62.751  75.086  93.309  1.00 25.00           C
ATOM     52  CA  PHE    52      63.348  71.401  92.332  1.00 25.00           C
ATOM     53  CA  GLU    53      65.120  68.370  93.894  1.00 25.00           C
ATOM     54  CA  ASN    54      66.084  65.852  96.620  1.00 25.00           C
ATOM     55  CA  PRO    55      66.041  64.649 100.206  1.00 25.00           C
ATOM     56  CA  LYS    56      66.988  65.279 103.842  1.00 25.00           C
ATOM     57  CA  GLY    57      70.746  64.991 104.516  1.00 25.00           C
ATOM     58  CA  TYR    58      72.219  65.835 101.117  1.00 25.00           C
ATOM     59  CA  SER    59      75.515  67.777 101.454  1.00 25.00           C
ATOM     60  CA  MET    60      73.616  71.057 100.990  1.00 25.00           C
ATOM     61  CA  PRO    61      74.723  71.650  97.403  1.00 25.00           C
ATOM     62  CA  VAL    62      72.382  70.400  94.744  1.00 25.00           C
ATOM     63  CA  LEU    63      73.346  72.996  92.191  1.00 25.00           C
ATOM     64  CA  CYS    64      72.816  75.817  89.692  1.00 25.00           C
ATOM     65  CA  ASN    65      75.543  77.585  91.671  1.00 25.00           C
ATOM     66  CA  LEU    66      78.001  78.205  94.443  1.00 25.00           C
ATOM     67  CA  PHE    67      74.917  78.591  96.709  1.00 25.00           C
ATOM     68  CA  GLY    68      76.424  80.343  99.763  1.00 25.00           C
ATOM     69  CA  THR    69      78.121  82.556  97.112  1.00 25.00           C
ATOM     70  CA  PRO    70      75.489  84.925  95.800  1.00 25.00           C
ATOM     71  CA  LYS    71      72.355  83.243  97.222  1.00 25.00           C
ATOM     72  CA  ARG    72      72.318  85.723 100.141  1.00 25.00           C
ATOM     73  CA  VAL    73      72.643  88.649  97.690  1.00 25.00           C
ATOM     74  CA  ALA    74      69.745  87.258  95.609  1.00 25.00           C
ATOM     75  CA  MET    75      67.605  86.921  98.768  1.00 25.00           C
ATOM     76  CA  GLY    76      68.424  90.533  99.738  1.00 25.00           C
ATOM     77  CA  MET    77      67.456  91.722  96.228  1.00 25.00           C
ATOM     78  CA  GLY    78      65.586  94.775  97.669  1.00 25.00           C
ATOM     79  CA  GLN    79      65.289  98.478  98.626  1.00 25.00           C
ATOM     80  CA  GLU    80      64.282 101.853  99.904  1.00 25.00           C
ATOM     81  CA  ASP    81      62.327 102.998 103.013  1.00 25.00           C
ATOM     82  CA  VAL    82      62.123 102.167 106.718  1.00 25.00           C
ATOM     83  CA  SER    83      63.706  99.930 109.393  1.00 25.00           C
ATOM     84  CA  ALA    84      63.826  97.011 106.917  1.00 25.00           C
ATOM     85  CA  LEU    85      65.482  99.266 104.301  1.00 25.00           C
ATOM     86  CA  ARG    86      68.068 100.406 106.886  1.00 25.00           C
ATOM     87  CA  GLU    87      68.795  96.759 107.803  1.00 25.00           C
ATOM     88  CA  VAL    88      69.238  95.890 104.099  1.00 25.00           C
ATOM     89  CA  GLY    89      71.638  98.843 103.668  1.00 25.00           C
ATOM     90  CA  LYS    90      73.643  97.690 106.721  1.00 25.00           C
ATOM     91  CA  LEU    91      73.827  94.142 105.292  1.00 25.00           C
ATOM     92  CA  LEU    92      75.039  95.532 101.935  1.00 25.00           C
ATOM     93  CA  ALA    93      77.715  97.601 103.730  1.00 25.00           C
ATOM     94  CA  PHE    94      78.854  94.498 105.663  1.00 25.00           C
ATOM     95  CA  LEU    95      79.064  92.510 102.396  1.00 25.00           C
ATOM     96  CA  LYS    96      82.272  90.676 103.303  1.00 25.00           C
ATOM    314  CA  ASP   314      75.816  75.565  77.514  1.00 25.00           C
ATOM    315  CA  ALA   315      73.693  76.908  74.652  1.00 25.00           C
ATOM    316  CA  ILE   316      71.563  78.360  71.903  1.00 25.00           C
ATOM    317  CA  TYR   317      69.899  75.501  73.660  1.00 25.00           C
ATOM    318  CA  HIS   318      67.842  72.344  73.452  1.00 25.00           C
ATOM    319  CA  SER   319      65.146  69.693  73.978  1.00 25.00           C
ATOM    320  CA  THR   320      62.229  69.494  76.329  1.00 25.00           C
ATOM    321  CA  TYR   321      60.585  66.609  78.200  1.00 25.00           C
ATOM    322  CA  THR   322      58.598  69.683  79.107  1.00 25.00           C
ATOM    323  CA  GLY   323      57.029  71.147  82.194  1.00 25.00           C
ATOM    324  CA  ARG   324      55.851  74.749  82.194  1.00 25.00           C
ATOM    325  CA  PRO   325      54.154  73.888  85.508  1.00 25.00           C
ATOM    326  CA  PRO   326      54.084  70.118  86.273  1.00 25.00           C
ATOM    327  CA  ASP   327      54.521  67.360  83.733  1.00 25.00           C
ATOM    328  CA  GLU   328      54.276  67.535  79.970  1.00 25.00           C
ATOM    329  CA  PRO   329      57.190  65.420  78.665  1.00 25.00           C
ATOM    330  CA  ALA   330      55.083  64.324  75.661  1.00 25.00           C
ATOM    331  CA  VAL   331      54.174  67.973  74.936  1.00 25.00           C
ATOM    332  CA  LEU   332      57.871  68.955  75.119  1.00 25.00           C
ATOM    333  CA  GLY   333      58.770  66.119  72.708  1.00 25.00           C
ATOM    334  CA  VAL   334      56.035  67.275  70.289  1.00 25.00           C
ATOM    335  CA  ALA   335      57.360  70.864  70.467  1.00 25.00           C
ATOM    336  CA  LEU   336      60.908  69.615  69.750  1.00 25.00           C
ATOM    337  CA  ASN   337      59.625  67.614  66.749  1.00 25.00           C
ATOM    338  CA  GLU   338      57.796  70.712  65.435  1.00 25.00           C
ATOM    339  CA  VAL   339      60.989  72.790  65.821  1.00 25.00           C
ATOM    340  CA  PHE   340      62.983  70.124  63.928  1.00 25.00           C
ATOM    341  CA  VAL   341      60.371  70.125  61.126  1.00 25.00           C
ATOM    342  CA  PRO   342      60.559  73.945  60.920  1.00 25.00           C
ATOM    343  CA  ILE   343      64.379  73.771  60.719  1.00 25.00           C
ATOM    344  CA  LEU   344      64.139  71.165  57.922  1.00 25.00           C
ATOM    345  CA  GLN   345      61.676  73.398  56.021  1.00 25.00           C
ATOM    346  CA  LYS   346      64.046  76.382  56.405  1.00 25.00           C
ATOM    347  CA  GLN   347      66.959  74.267  55.101  1.00 25.00           C
TER
END
