
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS168_5-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS168_5-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44         8 - 51          5.00    32.10
  LONGEST_CONTINUOUS_SEGMENT:    44         9 - 52          4.83    32.21
  LONGEST_CONTINUOUS_SEGMENT:    44        10 - 53          4.83    32.29
  LCS_AVERAGE:     26.57

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20       327 - 346         1.97    23.45
  LONGEST_CONTINUOUS_SEGMENT:    20       328 - 347         1.51    23.17
  LCS_AVERAGE:     11.31

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       328 - 342         0.98    23.35
  LCS_AVERAGE:      7.18

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   13   21     0    3    4    4    7   13   15   18   20   21   25   26   28   30   32   33   36   37   41   45 
LCS_GDT     D       8     D       8     11   14   44    10   11   13   14   14   15   17   18   22   25   30   34   34   37   40   41   44   45   45   45 
LCS_GDT     L       9     L       9     11   14   44    10   11   13   14   14   15   16   18   22   25   30   34   34   37   40   41   44   45   45   45 
LCS_GDT     R      10     R      10     11   14   44    10   11   13   14   14   15   17   19   22   30   34   36   37   40   41   42   44   45   45   46 
LCS_GDT     D      11     D      11     11   14   44    10   11   13   14   14   15   17   19   23   31   34   36   37   40   41   42   44   45   45   46 
LCS_GDT     F      12     F      12     11   14   44    10   11   13   14   14   15   17   19   22   25   32   34   37   38   41   42   44   45   45   46 
LCS_GDT     L      13     L      13     11   14   44    10   11   13   14   14   15   17   19   26   31   34   36   38   40   41   42   44   45   45   46 
LCS_GDT     T      14     T      14     11   14   44    10   11   13   14   14   15   18   26   30   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     L      15     L      15     11   14   44    10   11   13   14   14   15   17   19   23   31   34   36   38   40   41   42   44   45   45   46 
LCS_GDT     L      16     L      16     11   14   44    10   11   13   14   14   15   17   22   28   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     E      17     E      17     11   14   44    10   11   13   14   16   23   27   28   31   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     Q      18     Q      18     11   14   44    10   11   13   14   14   15   17   25   31   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     Q      19     Q      19      5   14   44     3    5    6   10   16   23   27   28   31   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     G      20     G      20      5   14   44     3    5    5    9   14   23   27   28   31   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     E      21     E      21      5   14   44     3    5    5    9   14   18   27   27   31   33   36   36   38   40   41   42   44   45   45   46 
LCS_GDT     L      22     L      22      5   17   44     3    5    9   15   22   23   27   28   31   33   36   36   38   40   41   42   44   45   45   51 
LCS_GDT     K      23     K      23      5   17   44     3    5    9   15   22   23   27   28   31   33   36   36   38   40   41   44   50   53   56   59 
LCS_GDT     R      24     R      24      5   17   44     4    4    9   15   22   23   27   28   31   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     I      25     I      25      5   17   44     4    4    9   15   22   23   27   28   31   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     T      26     T      26      5   17   44     4    4    7   15   22   23   27   28   31   33   36   36   38   40   46   50   52   54   56   59 
LCS_GDT     L      27     L      27      4   17   44     4    4    5   13   22   23   27   28   31   33   36   36   38   40   41   50   52   54   56   59 
LCS_GDT     P      28     P      28      4   18   44     3    3    5   15   22   23   27   28   31   33   36   36   38   40   41   42   44   49   55   57 
LCS_GDT     V      29     V      29      4   18   44     3    3    9   14   22   23   27   28   31   33   36   36   38   40   46   50   52   54   56   59 
LCS_GDT     D      30     D      30      4   18   44     3    3   12   14   22   23   27   28   31   33   36   36   38   40   46   50   52   54   56   59 
LCS_GDT     P      31     P      31      3   18   44     3    4    9   15   22   23   27   28   31   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     H      32     H      32     14   18   44     3    3   12   15   22   23   27   28   31   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     L      33     L      33     14   18   44     7   12   12   15   22   23   27   28   31   33   36   36   38   40   41   50   52   54   56   59 
LCS_GDT     E      34     E      34     14   18   44     6   12   12   15   22   23   27   28   31   33   36   36   38   40   41   50   52   54   56   59 
LCS_GDT     I      35     I      35     14   18   44     6   12   12   14   22   23   27   28   31   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     T      36     T      36     14   18   44     6   12   12   14   22   23   27   28   31   33   36   36   38   40   41   50   52   54   56   59 
LCS_GDT     E      37     E      37     14   18   44     7   12   12   15   22   23   27   28   31   33   36   36   38   40   41   42   44   45   51   58 
LCS_GDT     I      38     I      38     14   18   44     7   12   12   14   20   23   27   28   31   33   36   36   38   40   41   42   44   46   51   58 
LCS_GDT     A      39     A      39     14   18   44     7   12   12   14   18   23   26   28   31   33   36   36   38   40   41   42   44   45   47   58 
LCS_GDT     D      40     D      40     14   18   44     7   12   12   15   22   23   27   28   31   33   36   36   38   40   41   42   44   45   46   52 
LCS_GDT     R      41     R      41     14   18   44     5   12   12   15   22   23   27   28   31   33   36   36   38   40   41   42   44   45   47   52 
LCS_GDT     T      42     T      42     14   18   44     7   12   12   14   18   23   26   28   31   33   36   36   38   40   41   42   44   45   47   52 
LCS_GDT     L      43     L      43     14   18   44     7   12   12   14   18   23   26   27   30   33   36   36   38   40   41   42   44   45   46   52 
LCS_GDT     R      44     R      44     14   18   44     6   12   12   15   22   23   27   28   31   33   36   36   38   40   41   42   44   45   47   52 
LCS_GDT     A      45     A      45     14   18   44     3   10   13   15   22   23   27   28   31   33   36   36   38   40   41   42   44   45   47   52 
LCS_GDT     G      46     G      46      4   18   44     3    6   10   14   22   23   27   28   31   33   36   36   38   40   41   42   44   45   47   52 
LCS_GDT     G      47     G      47      4   14   44     3    9   13   14   22   23   27   28   31   33   36   36   38   40   41   42   44   45   48   52 
LCS_GDT     P      48     P      48      3    8   44     1    3    5    6    7    8   12   15   20   28   32   33   36   38   40   44   47   51   54   57 
LCS_GDT     A      49     A      49      4    8   44     3    4    5    6    7   10   12   16   17   20   24   29   34   40   46   50   52   54   56   59 
LCS_GDT     L      50     L      50      4    8   44     3    4    4    8   11   12   17   19   26   32   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     L      51     L      51      4    8   44     3    4    4    6    9   11   14   25   30   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     F      52     F      52      4    8   44     3    4    5    6   13   18   25   27   31   33   36   36   38   41   46   50   52   54   56   59 
LCS_GDT     E      53     E      53      4    8   44     3    4    7    7   10   13   13   15   22   25   27   31   36   41   46   50   52   54   56   59 
LCS_GDT     N      54     N      54      5    8   43     3    5    5    7   15   16   17   17   19   22   26   31   36   41   46   50   52   54   56   59 
LCS_GDT     P      55     P      55      5    6   42     4    5    5    5    6    8   11   16   18   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     K      56     K      56      5    6   36     4    5    5    5    6    8   11   15   18   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     G      57     G      57      5    6   23     4    5    5    6    6    7    8   11   14   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     Y      58     Y      58      5    6   24     4    5    5    6   10   13   13   15   18   21   26   30   36   41   46   50   52   54   56   59 
LCS_GDT     S      59     S      59      3    6   24     3    3    4    6    6   10   12   15   17   20   23   25   30   32   37   42   48   51   55   59 
LCS_GDT     M      60     M      60      3    6   24     3    3    4    5    6   10   12   15   17   20   24   26   30   35   40   46   50   53   56   59 
LCS_GDT     P      61     P      61      3    6   24     3    3    4    6    8    9   12   15   17   20   21   25   30   32   37   42   48   51   55   58 
LCS_GDT     V      62     V      62      3    6   24     3    3    4    6    8   13   15   15   17   20   21   25   30   32   37   42   48   51   55   59 
LCS_GDT     L      63     L      63      3    6   24     3    3    4    9   11   13   15   16   17   20   21   25   30   32   37   42   48   51   55   59 
LCS_GDT     C      64     C      64      3    6   24     2    3    4    6    7    8   15   16   17   20   21   25   30   36   43   47   52   54   56   59 
LCS_GDT     N      65     N      65      3   14   24     4    5    9   10   12   13   15   22   23   23   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     L      66     L      66      4   14   24     4    5    7   12   13   13   21   22   23   23   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     F      67     F      67      7   14   24     4    5    9   12   13   13   15   16   18   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     G      68     G      68      8   14   24     4    5    9   12   13   13   15   16   18   20   22   24   28   30   32   36   41   47   52   58 
LCS_GDT     T      69     T      69      9   14   24     4    7    9   12   13   13   15   16   17   19   22   24   28   30   32   35   40   42   47   52 
LCS_GDT     P      70     P      70      9   14   24     8    8    9   12   13   13   15   16   17   19   21   24   28   30   33   36   40   44   52   58 
LCS_GDT     K      71     K      71      9   14   24     8    8    9   12   13   13   15   16   17   19   22   24   28   30   33   36   42   45   54   58 
LCS_GDT     R      72     R      72      9   14   24     8    8    9   12   13   13   15   16   18   20   22   26   33   41   46   50   52   54   56   59 
LCS_GDT     V      73     V      73      9   14   24     8    8    9   12   13   13   15   16   18   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     A      74     A      74      9   14   24     8    8    9   12   13   13   15   16   18   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     M      75     M      75      9   14   24     8    8    9   12   13   13   15   16   18   20   22   25   30   36   46   50   52   54   56   59 
LCS_GDT     G      76     G      76      9   14   24     8    8    9   12   13   13   15   16   18   20   22   27   34   41   46   50   52   54   56   59 
LCS_GDT     M      77     M      77      9   14   24     8    8    9   12   13   13   15   18   19   20   24   29   34   41   46   50   52   54   56   59 
LCS_GDT     G      78     G      78      4   14   24     3    4    5    7   13   13   15   18   19   20   22   24   30   41   46   50   52   54   56   59 
LCS_GDT     Q      79     Q      79      4   14   24     3    4    5    7    8   13   15   16   19   20   23   29   34   41   46   50   52   54   56   59 
LCS_GDT     E      80     E      80      4    6   24     3    4    4    5    7   11   15   18   19   20   20   29   34   41   46   50   52   54   56   59 
LCS_GDT     D      81     D      81      4    6   24     3    4    4    5    7   11   15   18   19   20   20   29   34   41   46   50   52   54   56   59 
LCS_GDT     V      82     V      82      5   15   23     4    4   10   14   14   14   15   18   19   20   20   21   22   24   24   36   42   51   55   59 
LCS_GDT     S      83     S      83     13   15   23     4    4   10   14   14   14   15   18   19   20   23   24   25   31   37   46   52   54   56   59 
LCS_GDT     A      84     A      84     13   15   23     4   11   12   14   14   14   15   18   19   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     L      85     L      85     13   15   23     8   11   12   14   14   14   15   18   19   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     R      86     R      86     13   15   23    10   11   12   14   14   14   15   18   19   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     E      87     E      87     13   15   23    10   11   12   14   14   14   15   18   19   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     V      88     V      88     13   15   23    10   11   12   14   14   14   15   18   19   21   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     G      89     G      89     13   15   23    10   11   12   14   14   14   14   18   19   20   24   29   34   41   46   50   52   54   56   59 
LCS_GDT     K      90     K      90     13   15   23    10   11   12   14   14   14   14   18   19   20   24   29   34   41   46   50   52   54   56   59 
LCS_GDT     L      91     L      91     13   15   23    10   11   12   14   14   14   15   18   19   20   24   29   34   41   46   50   52   54   56   59 
LCS_GDT     L      92     L      92     13   15   23    10   11   12   14   14   14   15   18   19   20   20   23   26   29   34   41   46   51   55   59 
LCS_GDT     A      93     A      93     13   15   23    10   11   12   14   14   14   14   17   19   20   20   21   21   21   29   34   38   43   47   54 
LCS_GDT     F      94     F      94     13   15   23    10   11   12   14   14   14   14   18   19   20   20   21   21   22   29   32   38   43   47   54 
LCS_GDT     L      95     L      95     13   15   23    10   11   12   14   14   14   15   18   19   20   20   21   22   24   29   31   35   39   46   50 
LCS_GDT     K      96     K      96      3   15   23     1    3    4    5    8   12   15   18   19   20   20   21   22   24   25   27   35   39   41   47 
LCS_GDT     D     314     D     314      4    8   19     1    3    4    7    7    8    9   10   11   13   14   15   18   19   22   23   26   28   28   29 
LCS_GDT     A     315     A     315      6    8   19     2    4    5    7    7    8    9   11   12   13   15   16   18   21   22   24   26   28   28   29 
LCS_GDT     I     316     I     316      6    8   19     3    4    5    7    7    8    9   11   12   13   15   16   19   24   24   25   26   28   28   29 
LCS_GDT     Y     317     Y     317      6    8   19     3    4    5    7    7    8    9   11   12   14   15   20   22   24   24   25   26   28   29   29 
LCS_GDT     H     318     H     318      6    8   30     3    4    5    7    7    8    9   11   12   14   17   20   22   24   24   25   26   28   29   30 
LCS_GDT     S     319     S     319      6    8   30     3    4    5    7    7    9   11   12   14   15   15   20   22   24   24   25   26   29   33   35 
LCS_GDT     T     320     T     320      6    8   30     3    4    5    7    7    9   12   19   22   25   26   27   28   28   30   32   32   36   40   45 
LCS_GDT     Y     321     Y     321      4    8   30     3    3    4    6    7    8   12   19   23   25   26   27   28   29   32   37   43   50   53   59 
LCS_GDT     T     322     T     322      4    5   30     3    3    7    7   10   13   20   22   23   25   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     G     323     G     323      3    5   30     3    3    3    4    5    8   13   21   23   25   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     R     324     R     324      4    5   30     3    3    4    4    6    8    9   19   23   25   26   29   32   41   46   50   52   54   56   59 
LCS_GDT     P     325     P     325      4    5   30     3    3    4    9   11   15   17   21   23   25   26   27   29   33   36   43   46   54   56   59 
LCS_GDT     P     326     P     326      4    5   30     2    4    4    6    6    8   10   14   18   21   24   27   29   33   36   43   52   54   56   59 
LCS_GDT     D     327     D     327      4   20   30     3    4    4    5    9   13   17   21   22   25   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     E     328     E     328     15   20   30     7   12   14   18   20   20   21   22   23   25   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     P     329     P     329     15   20   30     9   13   16   18   20   20   21   22   23   25   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     A     330     A     330     15   20   30     9   13   16   18   20   20   21   22   23   25   26   29   34   41   46   50   52   54   56   59 
LCS_GDT     V     331     V     331     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   30   37   42   48   53   56   59 
LCS_GDT     L     332     L     332     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   28   34   40   45   47   54   55 
LCS_GDT     G     333     G     333     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   28   30   34   40   45   47   53 
LCS_GDT     V     334     V     334     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   38   42 
LCS_GDT     A     335     A     335     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   38   42 
LCS_GDT     L     336     L     336     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   38   42 
LCS_GDT     N     337     N     337     15   20   30     9   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     E     338     E     338     15   20   30     4   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     V     339     V     339     15   20   30     5   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     F     340     F     340     15   20   30     7   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     V     341     V     341     15   20   30     7   13   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     P     342     P     342     15   20   30     7   10   13   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     I     343     I     343     13   20   30     7   10   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     L     344     L     344     13   20   30     7   10   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     Q     345     Q     345     13   20   30     7   10   16   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     K     346     K     346     12   20   30     7   10   13   18   20   20   21   22   23   25   26   27   28   28   30   32   34   36   37   39 
LCS_GDT     Q     347     Q     347     12   20   30     3    8   13   17   20   20   21   22   23   23   25   27   28   28   30   32   34   36   37   39 
LCS_AVERAGE  LCS_A:  15.02  (   7.18   11.31   26.57 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     13     16     18     22     23     27     28     31     33     36     36     38     41     46     50     52     54     56     59 
GDT PERCENT_CA   8.06  10.48  12.90  14.52  17.74  18.55  21.77  22.58  25.00  26.61  29.03  29.03  30.65  33.06  37.10  40.32  41.94  43.55  45.16  47.58
GDT RMS_LOCAL    0.19   0.60   1.12   1.31   1.81   1.90   2.46   2.54   2.82   3.00   3.42   3.42   3.76   5.33   5.64   5.88   5.99   6.13   6.32   6.57
GDT RMS_ALL_CA  34.33  23.36  23.44  23.47  32.33  32.46  32.75  32.78  32.74  32.59  32.50  32.50  32.47  18.69  18.79  18.99  19.05  19.22  19.05  18.98

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         20.906
LGA    D       8      D       8         15.855
LGA    L       9      L       9         14.726
LGA    R      10      R      10         11.762
LGA    D      11      D      11         11.402
LGA    F      12      F      12         11.766
LGA    L      13      L      13          9.034
LGA    T      14      T      14          6.638
LGA    L      15      L      15          8.468
LGA    L      16      L      16          7.112
LGA    E      17      E      17          3.207
LGA    Q      18      Q      18          4.937
LGA    Q      19      Q      19          2.936
LGA    G      20      G      20          3.905
LGA    E      21      E      21          4.368
LGA    L      22      L      22          2.642
LGA    K      23      K      23          1.718
LGA    R      24      R      24          2.425
LGA    I      25      I      25          0.463
LGA    T      26      T      26          2.426
LGA    L      27      L      27          2.729
LGA    P      28      P      28          2.471
LGA    V      29      V      29          3.514
LGA    D      30      D      30          3.587
LGA    P      31      P      31          0.989
LGA    H      32      H      32          1.885
LGA    L      33      L      33          1.857
LGA    E      34      E      34          2.009
LGA    I      35      I      35          2.131
LGA    T      36      T      36          2.516
LGA    E      37      E      37          1.145
LGA    I      38      I      38          2.536
LGA    A      39      A      39          3.801
LGA    D      40      D      40          2.773
LGA    R      41      R      41          0.638
LGA    T      42      T      42          3.740
LGA    L      43      L      43          5.286
LGA    R      44      R      44          3.196
LGA    A      45      A      45          2.194
LGA    G      46      G      46          3.014
LGA    G      47      G      47          2.868
LGA    P      48      P      48          9.077
LGA    A      49      A      49         10.442
LGA    L      50      L      50          7.271
LGA    L      51      L      51          5.841
LGA    F      52      F      52          4.703
LGA    E      53      E      53         10.364
LGA    N      54      N      54         12.762
LGA    P      55      P      55         14.118
LGA    K      56      K      56         17.764
LGA    G      57      G      57         18.734
LGA    Y      58      Y      58         14.612
LGA    S      59      S      59         18.661
LGA    M      60      M      60         17.967
LGA    P      61      P      61         18.554
LGA    V      62      V      62         17.450
LGA    L      63      L      63         19.325
LGA    C      64      C      64         20.351
LGA    N      65      N      65         18.829
LGA    L      66      L      66         21.772
LGA    F      67      F      67         20.856
LGA    G      68      G      68         18.762
LGA    T      69      T      69         24.078
LGA    P      70      P      70         26.762
LGA    K      71      K      71         32.296
LGA    R      72      R      72         30.705
LGA    V      73      V      73         30.390
LGA    A      74      A      74         36.553
LGA    M      75      M      75         39.196
LGA    G      76      G      76         36.996
LGA    M      77      M      77         41.237
LGA    G      78      G      78         44.648
LGA    Q      79      Q      79         47.451
LGA    E      80      E      80         46.242
LGA    D      81      D      81         49.144
LGA    V      82      V      82         48.341
LGA    S      83      S      83         51.426
LGA    A      84      A      84         50.807
LGA    L      85      L      85         48.893
LGA    R      86      R      86         53.108
LGA    E      87      E      87         54.640
LGA    V      88      V      88         50.350
LGA    G      89      G      89         51.162
LGA    K      90      K      90         55.846
LGA    L      91      L      91         54.016
LGA    L      92      L      92         50.414
LGA    A      93      A      93         54.323
LGA    F      94      F      94         57.177
LGA    L      95      L      95         53.175
LGA    K      96      K      96         50.776
LGA    D     314      D     314         42.380
LGA    A     315      A     315         42.774
LGA    I     316      I     316         40.050
LGA    Y     317      Y     317         35.777
LGA    H     318      H     318         35.486
LGA    S     319      S     319         32.210
LGA    T     320      T     320         30.592
LGA    Y     321      Y     321         26.372
LGA    T     322      T     322         23.081
LGA    G     323      G     323         20.114
LGA    R     324      R     324         19.542
LGA    P     325      P     325         19.408
LGA    P     326      P     326         21.749
LGA    D     327      D     327         24.857
LGA    E     328      E     328         25.780
LGA    P     329      P     329         31.712
LGA    A     330      A     330         31.504
LGA    V     331      V     331         31.959
LGA    L     332      L     332         36.704
LGA    G     333      G     333         40.516
LGA    V     334      V     334         40.600
LGA    A     335      A     335         42.342
LGA    L     336      L     336         47.363
LGA    N     337      N     337         49.574
LGA    E     338      E     338         50.350
LGA    V     339      V     339         54.314
LGA    F     340      F     340         58.369
LGA    V     341      V     341         59.681
LGA    P     342      P     342         62.539
LGA    I     343      I     343         66.002
LGA    L     344      L     344         67.703
LGA    Q     345      Q     345         69.593
LGA    K     346      K     346         73.312
LGA    Q     347      Q     347         76.900

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     28    2.54    21.976    19.374     1.059

LGA_LOCAL      RMSD =  2.544  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 33.207  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 17.041  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.289408 * X  +  -0.707469 * Y  +   0.644772 * Z  +  57.452877
  Y_new =   0.838463 * X  +   0.512313 * Y  +   0.185783 * Z  +  60.021008
  Z_new =  -0.461761 * X  +   0.486851 * Y  +   0.741453 * Z  + 110.200951 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.581013   -2.560580  [ DEG:    33.2896   -146.7104 ]
  Theta =   0.479980    2.661613  [ DEG:    27.5008    152.4992 ]
  Phi   =   1.238436   -1.903157  [ DEG:    70.9571   -109.0429 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS168_5-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS168_5-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   28   2.54  19.374    17.04
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS168_5-D1
PFRMAT TS
TARGET T0356
MODEL 5
PARENT N/A
ATOM      7  CA  ASN     7      73.673  75.410 100.695  1.00 25.00           C
ATOM      8  CA  ASP     8      72.457  73.123  97.874  1.00 25.00           C
ATOM      9  CA  LEU     9      68.826  73.678  98.955  1.00 25.00           C
ATOM     10  CA  ARG    10      69.387  77.466  98.980  1.00 25.00           C
ATOM     11  CA  ASP    11      70.907  77.290  95.470  1.00 25.00           C
ATOM     12  CA  PHE    12      67.903  75.257  94.244  1.00 25.00           C
ATOM     13  CA  LEU    13      65.509  77.833  95.761  1.00 25.00           C
ATOM     14  CA  THR    14      67.429  80.665  94.040  1.00 25.00           C
ATOM     15  CA  LEU    15      67.240  78.799  90.702  1.00 25.00           C
ATOM     16  CA  LEU    16      63.469  78.310  91.162  1.00 25.00           C
ATOM     17  CA  GLU    17      63.052  82.040  91.921  1.00 25.00           C
ATOM     18  CA  GLN    18      65.051  82.928  88.777  1.00 25.00           C
ATOM     19  CA  GLN    19      62.482  85.306  87.439  1.00 25.00           C
ATOM     20  CA  GLY    20      60.817  87.037  90.444  1.00 25.00           C
ATOM     21  CA  GLU    21      58.616  83.994  89.846  1.00 25.00           C
ATOM     22  CA  LEU    22      58.727  80.320  88.865  1.00 25.00           C
ATOM     23  CA  LYS    23      58.376  78.911  92.318  1.00 25.00           C
ATOM     24  CA  ARG    24      59.871  77.114  95.297  1.00 25.00           C
ATOM     25  CA  ILE    25      60.870  75.339  98.540  1.00 25.00           C
ATOM     26  CA  THR    26      60.591  77.680 101.548  1.00 25.00           C
ATOM     27  CA  LEU    27      62.105  75.007 103.888  1.00 25.00           C
ATOM     28  CA  PRO    28      60.445  71.852 102.541  1.00 25.00           C
ATOM     29  CA  VAL    29      61.895  70.472  99.304  1.00 25.00           C
ATOM     30  CA  ASP    30      63.519  67.055  99.339  1.00 25.00           C
ATOM     31  CA  PRO    31      63.380  63.382  98.305  1.00 25.00           C
ATOM     32  CA  HIS    32      61.779  60.727  96.057  1.00 25.00           C
ATOM     33  CA  LEU    33      58.328  61.558  97.494  1.00 25.00           C
ATOM     34  CA  GLU    34      58.931  65.284  96.852  1.00 25.00           C
ATOM     35  CA  ILE    35      59.975  64.520  93.248  1.00 25.00           C
ATOM     36  CA  THR    36      56.812  62.419  92.750  1.00 25.00           C
ATOM     37  CA  GLU    37      54.668  65.274  94.136  1.00 25.00           C
ATOM     38  CA  ILE    38      56.379  67.745  91.761  1.00 25.00           C
ATOM     39  CA  ALA    39      55.731  65.392  88.809  1.00 25.00           C
ATOM     40  CA  ASP    40      52.048  65.100  89.818  1.00 25.00           C
ATOM     41  CA  ARG    41      51.778  68.914  90.028  1.00 25.00           C
ATOM     42  CA  THR    42      53.357  69.242  86.555  1.00 25.00           C
ATOM     43  CA  LEU    43      50.881  66.675  85.160  1.00 25.00           C
ATOM     44  CA  ARG    44      47.964  68.598  86.727  1.00 25.00           C
ATOM     45  CA  ALA    45      48.184  72.368  87.042  1.00 25.00           C
ATOM     46  CA  GLY    46      50.742  75.155  86.505  1.00 25.00           C
ATOM     47  CA  GLY    47      53.382  74.433  89.216  1.00 25.00           C
ATOM     48  CA  PRO    48      50.539  73.745  91.702  1.00 25.00           C
ATOM     49  CA  ALA    49      53.145  72.119  93.963  1.00 25.00           C
ATOM     50  CA  LEU    50      56.306  71.268  95.973  1.00 25.00           C
ATOM     51  CA  LEU    51      59.484  71.038  93.895  1.00 25.00           C
ATOM     52  CA  PHE    52      62.504  68.777  94.434  1.00 25.00           C
ATOM     53  CA  GLU    53      64.478  66.437  92.225  1.00 25.00           C
ATOM     54  CA  ASN    54      67.817  66.886  90.549  1.00 25.00           C
ATOM     55  CA  PRO    55      69.132  64.862  87.626  1.00 25.00           C
ATOM     56  CA  LYS    56      65.796  65.691  86.074  1.00 25.00           C
ATOM     57  CA  GLY    57      64.005  62.322  86.546  1.00 25.00           C
ATOM     58  CA  TYR    58      66.004  60.638  89.356  1.00 25.00           C
ATOM     59  CA  SER    59      64.356  57.322  90.222  1.00 25.00           C
ATOM     60  CA  MET    60      60.811  58.713  89.796  1.00 25.00           C
ATOM     61  CA  PRO    61      59.520  56.451  92.578  1.00 25.00           C
ATOM     62  CA  VAL    62      59.033  54.395  95.707  1.00 25.00           C
ATOM     63  CA  LEU    63      56.551  56.387  97.881  1.00 25.00           C
ATOM     64  CA  CYS    64      53.129  56.516  99.522  1.00 25.00           C
ATOM     65  CA  ASN    65      52.468  60.252  99.200  1.00 25.00           C
ATOM     66  CA  LEU    66      49.691  62.073  97.243  1.00 25.00           C
ATOM     67  CA  PHE    67      48.961  62.368  93.515  1.00 25.00           C
ATOM     68  CA  GLY    68      49.125  59.044  91.709  1.00 25.00           C
ATOM     69  CA  THR    69      45.629  58.277  92.952  1.00 25.00           C
ATOM     70  CA  PRO    70      43.207  61.139  93.526  1.00 25.00           C
ATOM     71  CA  LYS    71      42.261  59.029  96.580  1.00 25.00           C
ATOM     72  CA  ARG    72      44.759  60.978  98.731  1.00 25.00           C
ATOM     73  CA  VAL    73      43.294  64.287  97.479  1.00 25.00           C
ATOM     74  CA  ALA    74      39.760  63.065  98.310  1.00 25.00           C
ATOM     75  CA  MET    75      40.908  62.056 101.821  1.00 25.00           C
ATOM     76  CA  GLY    76      42.498  65.505 102.319  1.00 25.00           C
ATOM     77  CA  MET    77      39.253  67.193 101.181  1.00 25.00           C
ATOM     78  CA  GLY    78      37.312  69.621 103.334  1.00 25.00           C
ATOM     79  CA  GLN    79      35.279  67.084 105.328  1.00 25.00           C
ATOM     80  CA  GLU    80      32.796  69.397 106.988  1.00 25.00           C
ATOM     81  CA  ASP    81      30.052  66.818 107.804  1.00 25.00           C
ATOM     82  CA  VAL    82      26.809  67.831 106.122  1.00 25.00           C
ATOM     83  CA  SER    83      24.906  65.264 104.011  1.00 25.00           C
ATOM     84  CA  ALA    84      26.384  66.763 100.812  1.00 25.00           C
ATOM     85  CA  LEU    85      29.900  66.585 102.323  1.00 25.00           C
ATOM     86  CA  ARG    86      29.325  62.922 103.286  1.00 25.00           C
ATOM     87  CA  GLU    87      28.136  62.148  99.729  1.00 25.00           C
ATOM     88  CA  VAL    88      31.248  63.854  98.290  1.00 25.00           C
ATOM     89  CA  GLY    89      33.483  61.810 100.636  1.00 25.00           C
ATOM     90  CA  LYS    90      31.719  58.589  99.548  1.00 25.00           C
ATOM     91  CA  LEU    91      32.223  59.526  95.869  1.00 25.00           C
ATOM     92  CA  LEU    92      35.937  60.197  96.523  1.00 25.00           C
ATOM     93  CA  ALA    93      36.269  56.802  98.264  1.00 25.00           C
ATOM     94  CA  PHE    94      34.565  55.085  95.294  1.00 25.00           C
ATOM     95  CA  LEU    95      36.950  56.851  92.873  1.00 25.00           C
ATOM     96  CA  LYS    96      37.490  55.561  89.295  1.00 25.00           C
ATOM    314  CA  ASP   314      60.981  45.108 122.063  1.00 25.00           C
ATOM    315  CA  ALA   315      57.618  45.014 120.235  1.00 25.00           C
ATOM    316  CA  ILE   316      55.245  45.384 117.257  1.00 25.00           C
ATOM    317  CA  TYR   317      54.005  46.948 114.032  1.00 25.00           C
ATOM    318  CA  HIS   318      52.095  50.013 112.992  1.00 25.00           C
ATOM    319  CA  SER   319      49.332  51.270 110.635  1.00 25.00           C
ATOM    320  CA  THR   320      47.352  50.231 107.526  1.00 25.00           C
ATOM    321  CA  TYR   321      49.244  48.432 104.776  1.00 25.00           C
ATOM    322  CA  THR   322      51.781  48.873 101.972  1.00 25.00           C
ATOM    323  CA  GLY   323      49.390  51.758 101.271  1.00 25.00           C
ATOM    324  CA  ARG   324      52.868  53.164 100.554  1.00 25.00           C
ATOM    325  CA  PRO   325      51.179  55.186  97.787  1.00 25.00           C
ATOM    326  CA  PRO   326      47.592  55.484  98.812  1.00 25.00           C
ATOM    327  CA  ASP   327      46.488  56.137 102.422  1.00 25.00           C
ATOM    328  CA  GLU   328      50.107  56.269 103.501  1.00 25.00           C
ATOM    329  CA  PRO   329      49.751  53.396 106.009  1.00 25.00           C
ATOM    330  CA  ALA   330      53.412  52.422 105.449  1.00 25.00           C
ATOM    331  CA  VAL   331      54.490  56.054 106.007  1.00 25.00           C
ATOM    332  CA  LEU   332      52.449  56.188 109.244  1.00 25.00           C
ATOM    333  CA  GLY   333      54.072  52.930 110.433  1.00 25.00           C
ATOM    334  CA  VAL   334      57.544  54.348 109.655  1.00 25.00           C
ATOM    335  CA  ALA   335      56.707  57.535 111.608  1.00 25.00           C
ATOM    336  CA  LEU   336      55.519  55.431 114.579  1.00 25.00           C
ATOM    337  CA  ASN   337      58.763  53.396 114.466  1.00 25.00           C
ATOM    338  CA  GLU   338      60.817  56.627 114.405  1.00 25.00           C
ATOM    339  CA  VAL   339      58.854  57.961 117.411  1.00 25.00           C
ATOM    340  CA  PHE   340      59.475  54.688 119.300  1.00 25.00           C
ATOM    341  CA  VAL   341      63.216  54.913 118.510  1.00 25.00           C
ATOM    342  CA  PRO   342      63.289  58.529 119.767  1.00 25.00           C
ATOM    343  CA  ILE   343      61.517  57.469 122.992  1.00 25.00           C
ATOM    344  CA  LEU   344      64.052  54.642 123.486  1.00 25.00           C
ATOM    345  CA  GLN   345      66.938  57.104 122.962  1.00 25.00           C
ATOM    346  CA  LYS   346      65.393  59.498 125.521  1.00 25.00           C
ATOM    347  CA  GLN   347      65.037  56.625 128.029  1.00 25.00           C
TER
END
