
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS599_1-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS599_1-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        26 - 61          4.92    42.35
  LONGEST_CONTINUOUS_SEGMENT:    36        27 - 62          4.97    42.70
  LCS_AVERAGE:     24.67

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        68 - 89          2.00    28.11
  LCS_AVERAGE:     12.30

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16         8 - 23          0.91    35.56
  LCS_AVERAGE:      8.16

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   17   24     0    3    9   11   17   17   19   26   26   26   27   28   30   32   34   37   40   44   52   56 
LCS_GDT     D       8     D       8     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   32   34   36   39   43   46   49 
LCS_GDT     L       9     L       9     16   17   24     5   13   15   16   17   19   22   26   26   26   27   28   30   32   34   37   39   43   49   52 
LCS_GDT     R      10     R      10     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   31   34   37   40   43   49   53 
LCS_GDT     D      11     D      11     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   32   35   37   42   49   56   59 
LCS_GDT     F      12     F      12     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   32   38   43   49   54   58   60 
LCS_GDT     L      13     L      13     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   32   38   44   49   54   58   60 
LCS_GDT     T      14     T      14     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   35   38   44   49   54   58   60 
LCS_GDT     L      15     L      15     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   31   38   42   46   51   54   58   61 
LCS_GDT     L      16     L      16     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   33   38   42   46   51   54   58   61 
LCS_GDT     E      17     E      17     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   38   42   46   51   54   58   61 
LCS_GDT     Q      18     Q      18     16   17   24     6   13   15   16   17   19   22   26   26   26   27   28   33   38   42   46   51   54   58   61 
LCS_GDT     Q      19     Q      19     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   33   38   42   46   51   54   58   61 
LCS_GDT     G      20     G      20     16   17   24     9   13   15   16   17   19   22   26   26   26   27   28   30   38   42   45   48   53   57   61 
LCS_GDT     E      21     E      21     16   17   24     4   10   15   16   17   19   22   26   26   26   27   28   33   38   42   46   51   54   58   61 
LCS_GDT     L      22     L      22     16   17   24     4    6   15   16   17   19   22   26   26   26   27   28   30   38   42   46   51   54   58   61 
LCS_GDT     K      23     K      23     16   17   28     2    7   14   16   17   17   22   26   26   26   27   28   30   38   40   44   48   52   57   60 
LCS_GDT     R      24     R      24      3    4   29     3    4    4    4    6    7   15   19   20   23   26   28   33   38   42   46   51   54   58   61 
LCS_GDT     I      25     I      25      3    8   35     3    4    4    4    7   13   16   19   21   23   25   29   32   33   35   37   40   45   50   57 
LCS_GDT     T      26     T      26      6    8   36     3    5    8   11   14   16   19   24   24   24   25   29   32   33   35   36   36   39   40   44 
LCS_GDT     L      27     L      27      6    8   36     3    5    6    7   14   18   21   24   24   27   29   29   32   33   35   36   36   39   41   44 
LCS_GDT     P      28     P      28      6    8   36     3    5    6    7   14   18   21   24   24   27   29   29   32   33   35   36   38   43   45   49 
LCS_GDT     V      29     V      29      6    8   36     3    5    6    7    9   16   21   24   24   25   29   29   32   33   35   37   40   44   49   53 
LCS_GDT     D      30     D      30      6    8   36     3    5    6    7   14   18   21   24   24   27   29   29   32   33   35   36   40   45   50   53 
LCS_GDT     P      31     P      31      6    8   36     3    5    6    7    7   12   13   15   17   19   25   26   28   31   34   35   44   47   50   52 
LCS_GDT     H      32     H      32      4    8   36     3    3    6    9   10   18   21   24   24   27   29   29   32   33   35   43   44   47   48   50 
LCS_GDT     L      33     L      33      3   18   36     3    3    4    5    6   16   21   24   24   25   29   29   37   42   42   43   44   47   52   53 
LCS_GDT     E      34     E      34     15   19   36     3   14   15   17   17   19   21   24   26   33   36   39   42   42   43   46   51   54   58   61 
LCS_GDT     I      35     I      35     15   19   36     8   14   16   17   20   22   26   32   34   38   39   41   42   42   47   50   53   56   58   61 
LCS_GDT     T      36     T      36     15   19   36     8   14   16   17   17   23   28   32   35   38   39   41   42   42   44   46   51   54   58   61 
LCS_GDT     E      37     E      37     15   19   36     9   14   16   17   22   23   28   32   35   38   39   41   42   42   43   46   51   54   58   61 
LCS_GDT     I      38     I      38     15   19   36     9   14   16   17   17   19   23   27   31   36   38   41   42   42   47   50   53   56   58   61 
LCS_GDT     A      39     A      39     15   19   36     9   14   16   17   17   20   25   32   34   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     D      40     D      40     15   19   36     9   14   16   17   17   23   28   32   35   38   39   41   42   42   44   48   52   55   58   61 
LCS_GDT     R      41     R      41     15   19   36     9   14   16   17   22   23   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     T      42     T      42     15   19   36     9   14   16   17   17   19   24   32   34   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     L      43     L      43     15   19   36     9   14   16   17   17   19   21   24   24   27   30   41   42   45   47   50   53   56   58   61 
LCS_GDT     R      44     R      44     15   19   36     9   14   16   17   17   19   21   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     A      45     A      45     15   19   36     6   14   16   17   17   22   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     G      46     G      46     15   19   36     9   14   16   17   17   19   21   24   24   27   29   33   39   41   47   50   53   56   57   58 
LCS_GDT     G      47     G      47     15   19   36     6   14   16   17   17   19   21   24   24   27   29   33   39   41   47   50   53   56   57   58 
LCS_GDT     P      48     P      48     15   19   36     4    7   16   17   17   19   21   24   24   27   29   29   32   33   35   36   42   55   57   58 
LCS_GDT     A      49     A      49      8   19   36     4    7    8   11   17   19   21   24   24   27   29   29   32   33   35   36   49   56   57   58 
LCS_GDT     L      50     L      50      8   19   36     3    7   16   17   17   19   21   24   24   27   29   33   39   45   47   50   53   56   57   61 
LCS_GDT     L      51     L      51      8   19   36     3    7    8   10   16   19   21   22   24   27   29   30   38   45   45   50   53   56   57   58 
LCS_GDT     F      52     F      52      8   19   36     3    7    8   12   16   19   21   22   24   27   31   35   39   45   47   50   53   56   58   61 
LCS_GDT     E      53     E      53      8   15   36     3    7    8    9   13   14   16   19   22   24   27   33   39   45   47   50   53   56   57   60 
LCS_GDT     N      54     N      54      8   15   36     3    6    8   10   13   16   18   20   27   30   32   36   39   45   47   50   53   56   58   61 
LCS_GDT     P      55     P      55      8   10   36     3    7    9   13   17   19   23   27   29   34   36   38   40   42   47   50   53   56   58   61 
LCS_GDT     K      56     K      56      8   10   36     3    7   16   17   17   19   21   22   24   27   33   36   39   40   43   46   51   54   58   61 
LCS_GDT     G      57     G      57      4    7   36     3    3    4    5   14   19   21   22   24   28   32   36   38   41   44   46   52   55   58   61 
LCS_GDT     Y      58     Y      58      4    9   36     3    3    4    8    8   17   20   22   24   28   31   36   38   41   47   50   53   56   58   61 
LCS_GDT     S      59     S      59      6    9   36     3    5    6    8    8   11   12   15   19   25   30   33   38   45   47   50   53   56   58   61 
LCS_GDT     M      60     M      60      6    9   36     3    5    6    8    8   11   12   15   19   25   30   33   38   45   47   50   53   56   58   61 
LCS_GDT     P      61     P      61      6    9   36     3    5    6    8    8   11   13   15   18   22   29   33   38   45   45   49   52   56   57   60 
LCS_GDT     V      62     V      62      6    9   36     3    5    6    8    8   11   13   15   19   23   30   33   38   45   46   50   53   56   58   61 
LCS_GDT     L      63     L      63      6    9   35     3    5    6    8    8   11   13   15   18   22   30   33   38   45   45   50   53   56   58   61 
LCS_GDT     C      64     C      64      6    9   35     3    5    6    8    8   11   13   15   19   26   30   34   39   45   47   50   53   56   58   61 
LCS_GDT     N      65     N      65      4    9   35     3    4    6    8    8   11   13   16   22   26   32   36   39   45   47   50   53   56   58   61 
LCS_GDT     L      66     L      66      4    9   35     3    4    5    8    8    8   10   13   19   26   32   34   39   45   47   50   53   56   58   61 
LCS_GDT     F      67     F      67      4   12   35     3    4    4    4    5    6    7   24   34   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     G      68     G      68     11   22   35     8   10   13   17   22   23   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     T      69     T      69     11   22   35     8   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     P      70     P      70     11   22   35     8   10   11   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     K      71     K      71     11   22   35     8   10   11   16   20   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     R      72     R      72     11   22   35     8   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     V      73     V      73     11   22   35     8   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     A      74     A      74     11   22   35     8   10   14   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     M      75     M      75     11   22   35     8   10   12   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     G      76     G      76     11   22   35     4   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     M      77     M      77     11   22   35     5   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     G      78     G      78     11   22   35     5   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     Q      79     Q      79     11   22   35     4   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     E      80     E      80      9   22   35     3    6   11   14   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     D      81     D      81      9   22   35     5   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     V      82     V      82      9   22   35     5   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     S      83     S      83      9   22   35     4    8   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     A      84     A      84     13   22   35     4   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     L      85     L      85     13   22   35     5    9   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     R      86     R      86     13   22   35     5   10   12   13   20   24   28   32   35   38   39   41   42   45   47   50   53   56   57   61 
LCS_GDT     E      87     E      87     13   22   35     6   10   12   13   20   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     V      88     V      88     13   22   35     6   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     G      89     G      89     13   22   35     6   10   12   13   16   24   28   32   35   38   39   41   42   45   47   50   53   56   57   61 
LCS_GDT     K      90     K      90     13   17   35     6   10   12   13   17   19   26   29   35   38   39   41   42   42   43   46   53   56   57   58 
LCS_GDT     L      91     L      91     13   17   35     6   10   12   16   20   24   28   32   35   38   39   41   42   45   47   50   53   56   58   61 
LCS_GDT     L      92     L      92     13   17   35     5   10   13   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   57   61 
LCS_GDT     A      93     A      93     13   17   35     5   10   12   13   16   19   24   30   35   38   39   41   42   42   43   44   48   56   57   58 
LCS_GDT     F      94     F      94     13   17   35     5   10   12   13   17   23   26   32   35   38   39   41   42   42   43   48   53   56   57   58 
LCS_GDT     L      95     L      95     13   17   35     6   10   12   18   22   24   28   32   35   38   39   41   42   45   47   50   53   56   57   61 
LCS_GDT     K      96     K      96     13   17   35     4   10   12   13   16   23   28   32   35   38   39   41   42   42   45   50   53   56   57   58 
LCS_GDT     D     314     D     314     10   11   15     4    7   10   11   11   11   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     A     315     A     315     10   11   15     4    7   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     I     316     I     316     10   11   15     4    7   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     Y     317     Y     317     10   11   15     4    7   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     H     318     H     318     10   11   15     3    6   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     S     319     S     319     10   11   15     3    6   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     T     320     T     320     10   11   15     4    7   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     Y     321     Y     321     10   11   15     4    7   10   11   11   12   13   13   14   14   16   17   19   19   20   22   23   23   24   25 
LCS_GDT     T     322     T     322     10   11   26     4    7   10   11   11   12   13   13   14   14   15   17   19   20   25   26   26   26   26   26 
LCS_GDT     G     323     G     323     10   11   26     4    7   10   11   11   12   13   13   14   14   16   19   22   25   25   26   26   26   26   26 
LCS_GDT     R     324     R     324      4   11   26     3    4    4    7   10   12   13   13   16   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     P     325     P     325      4   11   26     3    4    4    7   10   13   14   16   17   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     P     326     P     326      4    9   26     3    4    4    5    8   12   13   16   17   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     D     327     D     327      3    6   26     3    3    3    4    5    6    6    9   11   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     E     328     E     328      3    6   26     2    3    3    5    5    6    6    9   17   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     P     329     P     329      3    6   26     3    3    3    5    5   13   14   16   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     A     330     A     330      3    4   26     3    3    3    3    4    4   15   17   19   19   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     V     331     V     331      3    4   26     3    3    9   11   13   13   14   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     L     332     L     332      3   10   26     2    3    3    4    5    9   13   16   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     G     333     G     333      9   15   26     3    7    9   12   14   15   15   17   19   19   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     V     334     V     334      9   15   26     3    8    9   12   14   15   15   17   19   19   19   21   24   25   25   26   26   26   26   26 
LCS_GDT     A     335     A     335      9   15   26     4    8    9   12   14   15   15   17   19   19   20   23   24   25   25   26   26   26   26   26 
LCS_GDT     L     336     L     336      9   15   26     4    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     N     337     N     337      9   15   26     4    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     E     338     E     338      9   15   26     4    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     V     339     V     339      9   15   26     4    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     F     340     F     340      9   15   26     5    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     V     341     V     341      9   15   26     5    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     P     342     P     342      9   15   26     5    8    9   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     I     343     I     343      9   15   26     5    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     L     344     L     344      9   15   26     5    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     Q     345     Q     345      9   15   26     4    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     K     346     K     346      9   15   26     4    8   10   12   14   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_GDT     Q     347     Q     347      9   15   26     4    8    9   12   13   15   15   17   19   20   22   23   24   25   25   26   26   26   26   26 
LCS_AVERAGE  LCS_A:  15.05  (   8.16   12.30   24.67 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     14     16     18     22     24     28     32     35     38     39     41     42     45     47     50     53     56     58     61 
GDT PERCENT_CA   7.26  11.29  12.90  14.52  17.74  19.35  22.58  25.81  28.23  30.65  31.45  33.06  33.87  36.29  37.90  40.32  42.74  45.16  46.77  49.19
GDT RMS_LOCAL    0.28   0.51   0.92   1.42   1.71   1.98   2.34   2.66   2.87   3.17   3.24   3.43   3.56   6.98   5.24   5.47   5.69   5.92   6.62   6.86
GDT RMS_ALL_CA  34.51  39.81  39.45  27.72  27.64  28.44  27.83  27.87  28.14  27.67  27.57  27.45  27.39  27.51  26.66  26.70  26.62  26.63  28.33  27.63

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         17.796
LGA    D       8      D       8         19.036
LGA    L       9      L       9         20.194
LGA    R      10      R      10         22.239
LGA    D      11      D      11         17.565
LGA    F      12      F      12         14.295
LGA    L      13      L      13         18.466
LGA    T      14      T      14         21.070
LGA    L      15      L      15         16.289
LGA    L      16      L      16         16.058
LGA    E      17      E      17         21.529
LGA    Q      18      Q      18         22.259
LGA    Q      19      Q      19         19.969
LGA    G      20      G      20         22.368
LGA    E      21      E      21         16.567
LGA    L      22      L      22         18.342
LGA    K      23      K      23         21.726
LGA    R      24      R      24         19.534
LGA    I      25      I      25         20.914
LGA    T      26      T      26         26.867
LGA    L      27      L      27         29.105
LGA    P      28      P      28         25.292
LGA    V      29      V      29         20.779
LGA    D      30      D      30         16.999
LGA    P      31      P      31         11.776
LGA    H      32      H      32         10.882
LGA    L      33      L      33         10.014
LGA    E      34      E      34          7.825
LGA    I      35      I      35          5.918
LGA    T      36      T      36          2.196
LGA    E      37      E      37          3.621
LGA    I      38      I      38          6.941
LGA    A      39      A      39          6.075
LGA    D      40      D      40          2.156
LGA    R      41      R      41          3.094
LGA    T      42      T      42          6.306
LGA    L      43      L      43          6.838
LGA    R      44      R      44          3.874
LGA    A      45      A      45          3.902
LGA    G      46      G      46          9.769
LGA    G      47      G      47         12.063
LGA    P      48      P      48         16.674
LGA    A      49      A      49         16.222
LGA    L      50      L      50         16.486
LGA    L      51      L      51         18.621
LGA    F      52      F      52         17.223
LGA    E      53      E      53         20.526
LGA    N      54      N      54         17.760
LGA    P      55      P      55         12.216
LGA    K      56      K      56         13.846
LGA    G      57      G      57         16.445
LGA    Y      58      Y      58         17.031
LGA    S      59      S      59         22.359
LGA    M      60      M      60         19.853
LGA    P      61      P      61         20.276
LGA    V      62      V      62         17.656
LGA    L      63      L      63         16.125
LGA    C      64      C      64         13.051
LGA    N      65      N      65         10.310
LGA    L      66      L      66          9.909
LGA    F      67      F      67          5.061
LGA    G      68      G      68          3.628
LGA    T      69      T      69          2.506
LGA    P      70      P      70          2.228
LGA    K      71      K      71          3.317
LGA    R      72      R      72          2.597
LGA    V      73      V      73          1.978
LGA    A      74      A      74          2.474
LGA    M      75      M      75          2.153
LGA    G      76      G      76          2.140
LGA    M      77      M      77          1.651
LGA    G      78      G      78          1.249
LGA    Q      79      Q      79          1.442
LGA    E      80      E      80          2.950
LGA    D      81      D      81          0.927
LGA    V      82      V      82          0.988
LGA    S      83      S      83          1.220
LGA    A      84      A      84          1.367
LGA    L      85      L      85          2.439
LGA    R      86      R      86          3.208
LGA    E      87      E      87          3.265
LGA    V      88      V      88          2.709
LGA    G      89      G      89          3.600
LGA    K      90      K      90          4.488
LGA    L      91      L      91          3.205
LGA    L      92      L      92          3.250
LGA    A      93      A      93          4.898
LGA    F      94      F      94          3.696
LGA    L      95      L      95          3.058
LGA    K      96      K      96          4.685
LGA    D     314      D     314         53.079
LGA    A     315      A     315         50.060
LGA    I     316      I     316         52.933
LGA    Y     317      Y     317         50.566
LGA    H     318      H     318         51.673
LGA    S     319      S     319         52.478
LGA    T     320      T     320         53.252
LGA    Y     321      Y     321         54.042
LGA    T     322      T     322         53.719
LGA    G     323      G     323         58.044
LGA    R     324      R     324         57.505
LGA    P     325      P     325         58.339
LGA    P     326      P     326         58.190
LGA    D     327      D     327         59.016
LGA    E     328      E     328         59.432
LGA    P     329      P     329         52.378
LGA    A     330      A     330         49.747
LGA    V     331      V     331         49.745
LGA    L     332      L     332         44.861
LGA    G     333      G     333         40.545
LGA    V     334      V     334         38.927
LGA    A     335      A     335         42.263
LGA    L     336      L     336         41.955
LGA    N     337      N     337         38.595
LGA    E     338      E     338         40.336
LGA    V     339      V     339         42.684
LGA    F     340      F     340         40.854
LGA    V     341      V     341         39.874
LGA    P     342      P     342         40.669
LGA    I     343      I     343         41.007
LGA    L     344      L     344         40.246
LGA    Q     345      Q     345         41.211
LGA    K     346      K     346         43.248
LGA    Q     347      Q     347         43.433

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     32    2.66    22.984    20.753     1.161

LGA_LOCAL      RMSD =  2.655  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 27.951  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 21.692  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.008889 * X  +  -0.976954 * Y  +  -0.213263 * Z  +  71.274628
  Y_new =   0.304928 * X  +   0.200465 * Y  +  -0.931039 * Z  +  34.979481
  Z_new =   0.952334 * X  +  -0.073306 * Y  +   0.296118 * Z  +  51.157978 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.242678    2.898915  [ DEG:   -13.9044    166.0956 ]
  Theta =  -1.260798   -1.880795  [ DEG:   -72.2384   -107.7616 ]
  Phi   =   1.599941   -1.541652  [ DEG:    91.6699    -88.3301 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_1-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_1-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   32   2.66  20.753    21.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_1-D1
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      7  CA  ASN     7      77.194  83.548  63.285  1.00  0.00              
ATOM      8  CA  ASP     8      74.143  83.749  65.167  1.00  0.00              
ATOM      9  CA  LEU     9      73.491  80.291  65.301  1.00  0.00              
ATOM     10  CA  ARG    10      76.729  79.491  66.146  1.00  0.00              
ATOM     11  CA  ASP    11      77.922  81.451  68.945  1.00  0.00              
ATOM     12  CA  PHE    12      74.924  80.699  70.865  1.00  0.00              
ATOM     13  CA  LEU    13      75.079  76.987  70.845  1.00  0.00              
ATOM     14  CA  THR    14      79.231  77.401  71.704  1.00  0.00              
ATOM     15  CA  LEU    15      78.002  79.578  74.716  1.00  0.00              
ATOM     16  CA  LEU    16      75.429  77.407  75.850  1.00  0.00              
ATOM     17  CA  GLU    17      77.640  74.309  76.180  1.00  0.00              
ATOM     18  CA  GLN    18      79.791  76.068  78.651  1.00  0.00              
ATOM     19  CA  GLN    19      77.194  76.611  80.492  1.00  0.00              
ATOM     20  CA  GLY    20      76.085  72.989  80.480  1.00  0.00              
ATOM     21  CA  GLU    21      72.835  74.064  79.880  1.00  0.00              
ATOM     22  CA  LEU    22      71.750  72.823  76.279  1.00  0.00              
ATOM     23  CA  LYS    23      72.214  69.509  77.826  1.00  0.00              
ATOM     24  CA  ARG    24      70.151  69.299  80.798  1.00  0.00              
ATOM     25  CA  ILE    25      67.053  70.380  79.214  1.00  0.00              
ATOM     26  CA  THR    26      66.662  68.659  76.152  1.00  0.00              
ATOM     27  CA  LEU    27      67.947  65.197  76.610  1.00  0.00              
ATOM     28  CA  PRO    28      66.400  64.972  79.916  1.00  0.00              
ATOM     29  CA  VAL    29      69.214  66.503  82.286  1.00  0.00              
ATOM     30  CA  ASP    30      69.554  64.774  85.496  1.00  0.00              
ATOM     31  CA  PRO    31      69.238  67.550  87.936  1.00  0.00              
ATOM     32  CA  HIS    32      68.252  66.192  91.357  1.00  0.00              
ATOM     33  CA  LEU    33      66.064  63.825  90.252  1.00  0.00              
ATOM     34  CA  GLU    34      62.729  64.025  91.323  1.00  0.00              
ATOM     35  CA  ILE    35      59.736  62.102  90.308  1.00  0.00              
ATOM     36  CA  THR    36      56.993  62.519  92.304  1.00  0.00              
ATOM     37  CA  GLU    37      57.377  66.371  91.502  1.00  0.00              
ATOM     38  CA  ILE    38      57.528  65.986  87.793  1.00  0.00              
ATOM     39  CA  ALA    39      54.322  63.747  87.823  1.00  0.00              
ATOM     40  CA  ASP    40      52.377  66.188  89.964  1.00  0.00              
ATOM     41  CA  ARG    41      53.072  69.449  87.574  1.00  0.00              
ATOM     42  CA  THR    42      51.787  67.538  84.891  1.00  0.00              
ATOM     43  CA  LEU    43      49.242  66.050  86.228  1.00  0.00              
ATOM     44  CA  ARG    44      47.591  69.000  87.592  1.00  0.00              
ATOM     45  CA  ALA    45      47.095  70.533  84.212  1.00  0.00              
ATOM     46  CA  GLY    46      46.461  67.784  81.697  1.00  0.00              
ATOM     47  CA  GLY    47      49.746  66.815  80.551  1.00  0.00              
ATOM     48  CA  PRO    48      51.683  63.504  80.563  1.00  0.00              
ATOM     49  CA  ALA    49      52.990  61.955  83.697  1.00  0.00              
ATOM     50  CA  LEU    50      56.511  60.269  83.917  1.00  0.00              
ATOM     51  CA  LEU    51      56.944  58.650  87.158  1.00  0.00              
ATOM     52  CA  PHE    52      60.405  57.596  89.083  1.00  0.00              
ATOM     53  CA  GLU    53      60.976  55.451  91.838  1.00  0.00              
ATOM     54  CA  ASN    54      64.254  56.416  93.082  1.00  0.00              
ATOM     55  CA  PRO    55      65.641  59.782  91.902  1.00  0.00              
ATOM     56  CA  LYS    56      69.401  59.226  92.355  1.00  0.00              
ATOM     57  CA  GLY    57      68.635  56.363  90.204  1.00  0.00              
ATOM     58  CA  TYR    58      67.798  57.986  87.401  1.00  0.00              
ATOM     59  CA  SER    59      64.414  56.189  85.764  1.00  0.00              
ATOM     60  CA  MET    60      62.870  58.920  84.445  1.00  0.00              
ATOM     61  CA  PRO    61      59.298  60.128  83.521  1.00  0.00              
ATOM     62  CA  VAL    62      58.998  62.542  80.462  1.00  0.00              
ATOM     63  CA  LEU    63      56.901  65.071  79.860  1.00  0.00              
ATOM     64  CA  CYS    64      57.844  67.404  77.499  1.00  0.00              
ATOM     65  CA  ASN    65      56.129  70.615  77.234  1.00  0.00              
ATOM     66  CA  LEU    66      55.027  70.099  80.829  1.00  0.00              
ATOM     67  CA  PHE    67      58.813  69.208  82.136  1.00  0.00              
ATOM     68  CA  GLY    68      61.183  71.366  80.110  1.00  0.00              
ATOM     69  CA  THR    69      59.588  74.336  80.028  1.00  0.00              
ATOM     70  CA  PRO    70      58.664  77.082  77.714  1.00  0.00              
ATOM     71  CA  LYS    71      60.505  79.395  79.873  1.00  0.00              
ATOM     72  CA  ARG    72      63.783  77.336  79.908  1.00  0.00              
ATOM     73  CA  VAL    73      63.744  77.058  76.069  1.00  0.00              
ATOM     74  CA  ALA    74      63.453  80.552  75.684  1.00  0.00              
ATOM     75  CA  MET    75      66.428  81.369  77.840  1.00  0.00              
ATOM     76  CA  GLY    76      68.888  78.450  76.663  1.00  0.00              
ATOM     77  CA  MET    77      68.435  79.506  72.810  1.00  0.00              
ATOM     78  CA  GLY    78      68.438  83.126  73.330  1.00  0.00              
ATOM     79  CA  GLN    79      64.438  83.857  71.839  1.00  0.00              
ATOM     80  CA  GLU    80      61.955  85.489  72.663  1.00  0.00              
ATOM     81  CA  ASP    81      59.548  83.223  71.782  1.00  0.00              
ATOM     82  CA  VAL    82      58.859  80.032  70.842  1.00  0.00              
ATOM     83  CA  SER    83      58.722  79.565  67.477  1.00  0.00              
ATOM     84  CA  ALA    84      61.541  81.902  66.408  1.00  0.00              
ATOM     85  CA  LEU    85      63.821  79.993  68.229  1.00  0.00              
ATOM     86  CA  ARG    86      62.949  76.469  66.796  1.00  0.00              
ATOM     87  CA  GLU    87      62.771  77.555  63.460  1.00  0.00              
ATOM     88  CA  VAL    88      66.229  78.847  63.530  1.00  0.00              
ATOM     89  CA  GLY    89      67.757  76.075  65.195  1.00  0.00              
ATOM     90  CA  LYS    90      66.183  73.731  63.157  1.00  0.00              
ATOM     91  CA  LEU    91      67.617  75.423  59.826  1.00  0.00              
ATOM     92  CA  LEU    92      70.786  76.177  61.142  1.00  0.00              
ATOM     93  CA  ALA    93      71.426  72.863  62.575  1.00  0.00              
ATOM     94  CA  PHE    94      70.804  72.076  58.965  1.00  0.00              
ATOM     95  CA  LEU    95      72.733  74.198  57.051  1.00  0.00              
ATOM     96  CA  LYS    96      75.728  74.089  58.929  1.00  0.00              
ATOM    314  CA  ASP   314      88.831  34.607  65.151  1.00  0.00              
ATOM    315  CA  ALA   315      86.406  35.379  62.878  1.00  0.00              
ATOM    316  CA  ILE   316      85.199  33.035  60.236  1.00  0.00              
ATOM    317  CA  TYR   317      84.117  34.995  56.741  1.00  0.00              
ATOM    318  CA  HIS   318      82.703  32.913  54.341  1.00  0.00              
ATOM    319  CA  SER   319      82.561  33.339  50.585  1.00  0.00              
ATOM    320  CA  THR   320      80.242  31.735  48.788  1.00  0.00              
ATOM    321  CA  TYR   321      80.173  32.227  45.408  1.00  0.00              
ATOM    322  CA  THR   322      78.259  32.223  42.005  1.00  0.00              
ATOM    323  CA  GLY   323      79.841  31.888  38.476  1.00  0.00              
ATOM    324  CA  ARG   324      76.657  33.609  36.863  1.00  0.00              
ATOM    325  CA  PRO   325      76.996  36.042  34.115  1.00  0.00              
ATOM    326  CA  PRO   326      76.206  39.202  34.183  1.00  0.00              
ATOM    327  CA  ASP   327      73.973  38.921  31.513  1.00  0.00              
ATOM    328  CA  GLU   328      71.217  36.774  32.434  1.00  0.00              
ATOM    329  CA  PRO   329      70.036  37.418  35.749  1.00  0.00              
ATOM    330  CA  ALA   330      66.978  38.803  36.288  1.00  0.00              
ATOM    331  CA  VAL   331      66.241  37.886  39.651  1.00  0.00              
ATOM    332  CA  LEU   332      66.557  39.869  42.953  1.00  0.00              
ATOM    333  CA  GLY   333      64.563  38.149  45.500  1.00  0.00              
ATOM    334  CA  VAL   334      63.183  39.296  48.736  1.00  0.00              
ATOM    335  CA  ALA   335      61.870  36.327  50.665  1.00  0.00              
ATOM    336  CA  LEU   336      64.493  34.290  49.313  1.00  0.00              
ATOM    337  CA  ASN   337      67.653  36.121  50.281  1.00  0.00              
ATOM    338  CA  GLU   338      66.089  35.900  53.526  1.00  0.00              
ATOM    339  CA  VAL   339      65.370  32.372  53.737  1.00  0.00              
ATOM    340  CA  PHE   340      68.698  31.399  52.886  1.00  0.00              
ATOM    341  CA  VAL   341      70.050  34.376  54.689  1.00  0.00              
ATOM    342  CA  PRO   342      68.746  34.399  57.611  1.00  0.00              
ATOM    343  CA  ILE   343      69.271  30.826  58.049  1.00  0.00              
ATOM    344  CA  LEU   344      72.740  31.183  57.496  1.00  0.00              
ATOM    345  CA  GLN   345      73.183  34.015  60.185  1.00  0.00              
ATOM    346  CA  LYS   346      71.591  31.887  63.006  1.00  0.00              
ATOM    347  CA  GLN   347      73.694  29.163  63.024  1.00  0.00              
TER                                                                             
END
