
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS599_2-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS599_2-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        64 - 96          4.96    34.82
  LCS_AVERAGE:     23.01

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24        73 - 96          1.89    38.19
  LCS_AVERAGE:     13.38

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16         8 - 23          0.93    35.30
  LONGEST_CONTINUOUS_SEGMENT:    16        81 - 96          0.97    40.98
  LCS_AVERAGE:      8.59

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   17   31     0    3    6    9   14   16   20   23   25   25   27   32   44   45   47   49   51   53   56   57 
LCS_GDT     D       8     D       8     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L       9     L       9     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     R      10     R      10     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     D      11     D      11     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     F      12     F      12     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L      13     L      13     16   17   31     7   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     T      14     T      14     16   17   31     7   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L      15     L      15     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L      16     L      16     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     E      17     E      17     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     Q      18     Q      18     16   17   31     4   14   18   18   19   23   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     Q      19     Q      19     16   17   31     4   14   18   18   19   23   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     G      20     G      20     16   17   31     8   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     E      21     E      21     16   17   31     3   14   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L      22     L      22     16   17   31     2    6   16   17   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     K      23     K      23     16   17   31     3   10   16   17   18   24   28   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     R      24     R      24      3   17   31     3    3    4    6    7   16   20   23   25   25   27   34   39   45   47   49   51   53   56   57 
LCS_GDT     I      25     I      25      3    8   31     3    3    5    6    7   12   20   23   25   25   27   29   30   32   40   47   50   53   56   57 
LCS_GDT     T      26     T      26      3    8   31     3    3    5    6    7    9   14   21   25   25   27   29   30   31   34   39   49   51   56   57 
LCS_GDT     L      27     L      27      4    8   31     3    3    5    7    8   13   20   23   25   25   27   29   30   32   34   47   50   53   56   57 
LCS_GDT     P      28     P      28      4    8   31     3    4    6    7    8   10   12   18   19   25   26   29   30   31   33   35   36   39   40   41 
LCS_GDT     V      29     V      29      4    8   31     3    4    6    7   12   16   20   23   25   25   27   29   30   31   34   35   38   41   44   49 
LCS_GDT     D      30     D      30      4    8   31     3    3    5    9   12   16   20   23   25   25   27   29   30   31   34   35   39   41   44   49 
LCS_GDT     P      31     P      31      3    8   31     3    3    5    6    8   14   18   23   25   25   26   28   30   30   34   35   35   39   40   49 
LCS_GDT     H      32     H      32      3    8   31     3    4    6    8   12   16   20   23   25   25   27   29   30   31   34   35   38   40   44   49 
LCS_GDT     L      33     L      33      3    8   31     3    4    6    7    8   10   12   18   23   25   27   29   30   31   34   35   39   42   49   52 
LCS_GDT     E      34     E      34     13   16   31     4    7   11   14   16   16   17   18   22   25   27   29   30   34   40   47   50   52   56   57 
LCS_GDT     I      35     I      35     13   16   31     4    9   12   14   16   16   17   19   22   25   27   32   39   45   47   49   50   53   56   57 
LCS_GDT     T      36     T      36     13   16   31     4    9   12   14   16   16   17   18   30   38   39   43   45   47   48   49   51   53   56   57 
LCS_GDT     E      37     E      37     13   16   31     7   10   12   14   16   16   17   20   30   36   39   42   45   47   48   49   51   53   56   57 
LCS_GDT     I      38     I      38     13   16   25     7   10   12   14   16   16   17   18   20   21   27   35   41   42   45   48   50   52   56   57 
LCS_GDT     A      39     A      39     13   16   25     7   10   12   14   16   18   22   28   33   36   39   41   45   47   48   49   51   53   56   57 
LCS_GDT     D      40     D      40     13   16   25     7   10   12   15   18   19   22   25   29   36   39   41   45   47   48   49   51   53   54   57 
LCS_GDT     R      41     R      41     13   16   25     7   10   12   14   16   16   17   18   24   30   34   39   40   43   45   48   49   51   53   54 
LCS_GDT     T      42     T      42     13   16   25     7   10   12   14   16   16   17   18   20   21   22   23   30   39   41   45   47   47   50   53 
LCS_GDT     L      43     L      43     13   16   25     7   10   12   14   16   16   17   18   20   21   22   23   26   28   30   37   43   47   50   52 
LCS_GDT     R      44     R      44     13   16   25     3   10   12   14   16   16   17   18   20   21   22   23   26   28   30   33   35   39   46   50 
LCS_GDT     A      45     A      45     13   16   25     3   10   12   14   16   16   17   18   20   21   22   23   26   28   30   32   34   36   40   45 
LCS_GDT     G      46     G      46     13   16   25     3   10   12   14   16   16   17   18   20   21   22   23   26   28   30   32   34   35   37   42 
LCS_GDT     G      47     G      47     13   16   25     3    6   11   14   16   16   17   18   20   21   22   23   26   28   30   32   34   36   38   42 
LCS_GDT     P      48     P      48     12   16   25     3    6    9   13   16   16   17   18   20   21   22   23   26   28   30   32   34   36   38   42 
LCS_GDT     A      49     A      49      8   16   25     3    7   11   13   16   16   17   18   20   21   22   23   26   30   38   41   44   46   50   52 
LCS_GDT     L      50     L      50      8   15   25     3    7    8   10   12   13   14   16   17   20   20   22   26   31   37   41   43   45   50   51 
LCS_GDT     L      51     L      51      8   15   25     3    7    8   11   13   14   17   18   18   20   20   22   29   31   38   41   43   45   50   52 
LCS_GDT     F      52     F      52      8   12   25     3    7    8   10   12   13   14   15   16   18   20   22   26   28   30   32   35   39   41   43 
LCS_GDT     E      53     E      53      8   12   25     3    7    8   10   12   13   14   16   17   20   20   21   26   28   30   32   34   36   39   42 
LCS_GDT     N      54     N      54      8   11   24     3    7    8   10   12   13   14   15   16   16   17   19   21   25   27   30   32   35   38   39 
LCS_GDT     P      55     P      55      8   11   24     4    7    8   10   12   13   14   15   16   16   19   21   26   28   30   32   34   35   38   42 
LCS_GDT     K      56     K      56      8   11   23     4    5    8   10   12   13   14   15   16   16   17   20   22   25   28   32   34   35   37   37 
LCS_GDT     G      57     G      57      6   11   23     4    5    7    9   11   12   13   14   16   17   20   22   26   28   30   32   34   35   37   42 
LCS_GDT     Y      58     Y      58      6   11   23     4    4    6    9   11   11   11   12   15   17   20   22   26   28   30   32   34   36   38   42 
LCS_GDT     S      59     S      59      7   11   23     3    5    7    8   11   11   11   12   14   15   18   22   26   28   30   32   35   36   38   42 
LCS_GDT     M      60     M      60      7   11   23     3    6    7    9   11   11   11   12   14   15   17   22   25   28   30   32   35   39   41   42 
LCS_GDT     P      61     P      61      7   11   23     3    6    7    9   11   11   11   12   14   15   17   22   25   28   30   33   35   39   41   46 
LCS_GDT     V      62     V      62      7   11   23     3    6    7    9   11   11   11   13   15   17   20   22   26   28   30   34   38   40   43   46 
LCS_GDT     L      63     L      63      7   11   27     3    6    7    9   11   11   11   13   15   17   20   24   32   39   40   42   46   49   51   55 
LCS_GDT     C      64     C      64      7   11   33     3    6    7    9   12   13   14   17   19   24   26   29   37   41   45   47   50   53   56   57 
LCS_GDT     N      65     N      65      7   11   33     4    6    7    9   11   14   17   21   30   36   39   40   45   47   48   49   51   53   56   57 
LCS_GDT     L      66     L      66      4   11   33     4    4    7   10   12   14   15   19   29   36   39   42   45   47   48   49   51   53   56   57 
LCS_GDT     F      67     F      67      4   18   33     4    4    4    9   12   21   27   31   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     G      68     G      68     12   18   33     9   10   13   15   18   23   27   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     T      69     T      69     12   18   33     9   10   13   15   18   24   28   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     P      70     P      70     12   18   33     9   10   13   15   18   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     K      71     K      71     12   18   33     9   10   13   15   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     R      72     R      72     12   18   33     9   10   18   18   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     V      73     V      73     12   24   33     9   10   15   17   19   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     A      74     A      74     12   24   33     9   11   18   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     M      75     M      75     12   24   33     9   10   13   17   22   24   25   31   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     G      76     G      76     12   24   33     9   10   13   20   22   24   25   26   29   35   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     M      77     M      77     12   24   33     5   10   13   20   22   24   25   28   33   36   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     G      78     G      78     12   24   33     4   10   13   20   22   24   25   29   33   36   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     Q      79     Q      79     12   24   33     2   10   13   20   22   24   27   31   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     E      80     E      80      9   24   33     3    7   15   19   22   24   25   26   27   34   39   40   45   47   48   49   51   53   56   57 
LCS_GDT     D      81     D      81     16   24   33     4   12   15   20   22   24   25   26   33   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     V      82     V      82     16   24   33     4    7   14   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     S      83     S      83     16   24   33     4    7   14   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     A      84     A      84     16   24   33     4   13   15   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L      85     L      85     16   24   33    11   14   18   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     R      86     R      86     16   24   33    11   13   15   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     E      87     E      87     16   24   33    11   13   15   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     V      88     V      88     16   24   33    11   14   18   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     G      89     G      89     16   24   33    11   13   15   20   22   24   25   26   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     K      90     K      90     16   24   33    11   13   15   20   22   24   25   26   27   38   43   43   45   47   48   49   51   53   54   57 
LCS_GDT     L      91     L      91     16   24   33    11   13   15   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     L      92     L      92     16   24   33    11   13   15   20   22   24   25   30   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     A      93     A      93     16   24   33    11   13   15   20   22   24   24   26   27   29   32   39   45   47   47   49   51   53   54   55 
LCS_GDT     F      94     F      94     16   24   33    11   13   15   19   22   24   25   26   27   38   43   43   45   47   47   49   51   53   54   57 
LCS_GDT     L      95     L      95     16   24   33    11   13   15   20   22   24   29   32   37   38   43   43   45   47   48   49   51   53   56   57 
LCS_GDT     K      96     K      96     16   24   33     4   13   15   20   22   24   25   26   27   29   34   40   45   47   47   49   51   53   54   57 
LCS_GDT     D     314     D     314      8   13   22     4    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     A     315     A     315      8   13   22     4    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     I     316     I     316      8   13   22     4    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     Y     317     Y     317      8   13   22     4    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     H     318     H     318      8   13   22     3    6    9   10   10   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     S     319     S     319      8   13   22     4    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     T     320     T     320      8   13   22     3    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     Y     321     Y     321      8   13   22     3    6    9   10   11   13   13   13   15   16   16   17   18   20   20   21   22   23   23   25 
LCS_GDT     T     322     T     322      8   13   26     3    6    9   10   11   13   13   13   14   15   15   17   18   20   21   23   24   25   26   26 
LCS_GDT     G     323     G     323      7   13   26     3    5    8   10   11   13   13   13   15   16   16   19   20   22   24   24   24   25   26   26 
LCS_GDT     R     324     R     324      5   13   26     3    5    7   10   11   13   13   14   19   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     P     325     P     325      5   13   26     3    5    7   10   11   16   17   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     P     326     P     326      5   13   26     4    5    7   10   11   13   13   13   15   18   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     D     327     D     327      4    6   26     4    4    4    6   14   16   17   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     E     328     E     328      4    6   26     4    4    4    6    7    8   11   17   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     P     329     P     329     10   19   26     4    6   11   14   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     A     330     A     330     10   19   26     4    9   11   14   16   19   19   19   19   19   20   22   23   24   24   24   24   25   26   26 
LCS_GDT     V     331     V     331     10   19   26     4    9   12   14   16   19   19   19   19   19   21   22   23   24   24   24   24   25   26   26 
LCS_GDT     L     332     L     332     10   19   26     4    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     G     333     G     333     10   19   26     4    9   12   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     V     334     V     334     10   19   26     4    9   12   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     A     335     A     335     10   19   26     4    9   12   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     L     336     L     336     10   19   26     4    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     N     337     N     337     10   19   26     4    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     E     338     E     338     10   19   26     4    8   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     V     339     V     339     10   19   26     4    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     F     340     F     340     10   19   26     4    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     V     341     V     341     10   19   26     6    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     P     342     P     342     10   19   26     6    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     I     343     I     343     10   19   26     5    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     L     344     L     344     10   19   26     6    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     Q     345     Q     345     10   19   26     6    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     K     346     K     346     10   19   26     6    9   13   15   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_GDT     Q     347     Q     347     10   19   26     6    9   13   14   16   19   19   19   20   21   22   22   23   24   24   24   24   25   26   26 
LCS_AVERAGE  LCS_A:  14.99  (   8.59   13.38   23.01 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     14     18     20     22     24     29     32     37     38     43     43     45     47     48     49     51     53     56     57 
GDT PERCENT_CA   8.87  11.29  14.52  16.13  17.74  19.35  23.39  25.81  29.84  30.65  34.68  34.68  36.29  37.90  38.71  39.52  41.13  42.74  45.16  45.97
GDT RMS_LOCAL    0.29   0.70   0.91   1.64   1.70   1.89   2.27   2.52   2.96   3.06   3.53   3.53   3.78   4.09   4.19   4.21   4.52   4.77   5.78   5.86
GDT RMS_ALL_CA  41.36  35.62  36.18  38.45  38.62  38.19  35.60  35.17  34.99  35.25  35.18  35.06  35.25  34.15  34.08  35.22  34.77  34.39  34.26  34.26

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7          7.728
LGA    D       8      D       8          2.633
LGA    L       9      L       9          1.352
LGA    R      10      R      10          1.821
LGA    D      11      D      11          2.130
LGA    F      12      F      12          1.562
LGA    L      13      L      13          1.628
LGA    T      14      T      14          2.219
LGA    L      15      L      15          2.030
LGA    L      16      L      16          1.378
LGA    E      17      E      17          1.576
LGA    Q      18      Q      18          3.217
LGA    Q      19      Q      19          3.183
LGA    G      20      G      20          1.846
LGA    E      21      E      21          2.006
LGA    L      22      L      22          3.111
LGA    K      23      K      23          3.672
LGA    R      24      R      24         10.415
LGA    I      25      I      25         13.473
LGA    T      26      T      26         14.705
LGA    L      27      L      27         14.532
LGA    P      28      P      28         20.096
LGA    V      29      V      29         19.420
LGA    D      30      D      30         21.347
LGA    P      31      P      31         23.008
LGA    H      32      H      32         23.546
LGA    L      33      L      33         18.845
LGA    E      34      E      34         15.308
LGA    I      35      I      35         11.246
LGA    T      36      T      36          5.980
LGA    E      37      E      37          8.457
LGA    I      38      I      38         12.947
LGA    A      39      A      39          9.019
LGA    D      40      D      40          9.986
LGA    R      41      R      41         15.188
LGA    T      42      T      42         16.623
LGA    L      43      L      43         15.939
LGA    R      44      R      44         19.582
LGA    A      45      A      45         23.456
LGA    G      46      G      46         24.459
LGA    G      47      G      47         22.910
LGA    P      48      P      48         21.159
LGA    A      49      A      49         15.680
LGA    L      50      L      50         18.929
LGA    L      51      L      51         17.797
LGA    F      52      F      52         23.171
LGA    E      53      E      53         24.175
LGA    N      54      N      54         31.044
LGA    P      55      P      55         33.046
LGA    K      56      K      56         40.193
LGA    G      57      G      57         42.995
LGA    Y      58      Y      58         36.691
LGA    S      59      S      59         35.227
LGA    M      60      M      60         27.849
LGA    P      61      P      61         25.109
LGA    V      62      V      62         21.939
LGA    L      63      L      63         15.855
LGA    C      64      C      64         12.939
LGA    N      65      N      65          9.145
LGA    L      66      L      66          7.535
LGA    F      67      F      67          4.129
LGA    G      68      G      68          3.992
LGA    T      69      T      69          3.119
LGA    P      70      P      70          2.634
LGA    K      71      K      71          1.491
LGA    R      72      R      72          1.516
LGA    V      73      V      73          3.532
LGA    A      74      A      74          2.772
LGA    M      75      M      75          4.502
LGA    G      76      G      76          6.207
LGA    M      77      M      77          5.948
LGA    G      78      G      78          6.303
LGA    Q      79      Q      79          4.938
LGA    E      80      E      80          7.475
LGA    D      81      D      81          5.441
LGA    V      82      V      82          3.074
LGA    S      83      S      83          3.035
LGA    A      84      A      84          2.948
LGA    L      85      L      85          2.362
LGA    R      86      R      86          3.870
LGA    E      87      E      87          3.725
LGA    V      88      V      88          2.306
LGA    G      89      G      89          4.937
LGA    K      90      K      90          6.034
LGA    L      91      L      91          2.852
LGA    L      92      L      92          4.545
LGA    A      93      A      93          7.863
LGA    F      94      F      94          6.422
LGA    L      95      L      95          3.384
LGA    K      96      K      96          7.691
LGA    D     314      D     314         78.585
LGA    A     315      A     315         73.617
LGA    I     316      I     316         71.877
LGA    Y     317      Y     317         68.348
LGA    H     318      H     318         65.495
LGA    S     319      S     319         64.580
LGA    T     320      T     320         62.814
LGA    Y     321      Y     321         63.099
LGA    T     322      T     322         60.151
LGA    G     323      G     323         64.500
LGA    R     324      R     324         65.292
LGA    P     325      P     325         64.737
LGA    P     326      P     326         64.109
LGA    D     327      D     327         61.458
LGA    E     328      E     328         62.163
LGA    P     329      P     329         56.963
LGA    A     330      A     330         61.576
LGA    V     331      V     331         60.132
LGA    L     332      L     332         54.280
LGA    G     333      G     333         55.788
LGA    V     334      V     334         60.934
LGA    A     335      A     335         57.219
LGA    L     336      L     336         52.360
LGA    N     337      N     337         57.069
LGA    E     338      E     338         60.634
LGA    V     339      V     339         55.123
LGA    F     340      F     340         52.974
LGA    V     341      V     341         59.219
LGA    P     342      P     342         60.649
LGA    I     343      I     343         54.773
LGA    L     344      L     344         55.561
LGA    Q     345      Q     345         61.885
LGA    K     346      K     346         60.676
LGA    Q     347      Q     347         56.567

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     32    2.52    23.185    21.635     1.223

LGA_LOCAL      RMSD =  2.517  Number of atoms =   32  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 34.765  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 27.688  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.670074 * X  +  -0.739413 * Y  +  -0.065343 * Z  +  90.241745
  Y_new =   0.634066 * X  +   0.524383 * Y  +   0.568317 * Z  +  61.331192
  Z_new =  -0.385956 * X  +  -0.422246 * Y  +   0.820211 * Z  +  63.343212 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.475418    2.666174  [ DEG:   -27.2395    152.7605 ]
  Theta =   0.396244    2.745349  [ DEG:    22.7031    157.2969 ]
  Phi   =   0.757794   -2.383798  [ DEG:    43.4184   -136.5816 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_2-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_2-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   32   2.52  21.635    27.69
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_2-D1
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      7  CA  ASN     7      78.365  76.591  86.459  1.00  0.00              
ATOM      8  CA  ASP     8      76.442  76.447  83.311  1.00  0.00              
ATOM      9  CA  LEU     9      73.037  76.077  85.018  1.00  0.00              
ATOM     10  CA  ARG    10      73.243  78.150  87.884  1.00  0.00              
ATOM     11  CA  ASP    11      73.479  80.857  85.459  1.00  0.00              
ATOM     12  CA  PHE    12      70.257  79.634  83.830  1.00  0.00              
ATOM     13  CA  LEU    13      68.067  78.941  87.312  1.00  0.00              
ATOM     14  CA  THR    14      69.475  82.198  88.477  1.00  0.00              
ATOM     15  CA  LEU    15      68.687  84.460  85.767  1.00  0.00              
ATOM     16  CA  LEU    16      65.331  83.149  85.824  1.00  0.00              
ATOM     17  CA  GLU    17      65.084  83.621  89.301  1.00  0.00              
ATOM     18  CA  GLN    18      65.591  87.134  90.328  1.00  0.00              
ATOM     19  CA  GLN    19      62.791  87.714  87.590  1.00  0.00              
ATOM     20  CA  GLY    20      60.218  85.602  88.570  1.00  0.00              
ATOM     21  CA  GLU    21      59.883  83.317  86.006  1.00  0.00              
ATOM     22  CA  LEU    22      61.249  79.795  86.422  1.00  0.00              
ATOM     23  CA  LYS    23      59.007  79.350  89.468  1.00  0.00              
ATOM     24  CA  ARG    24      56.088  80.497  87.830  1.00  0.00              
ATOM     25  CA  ILE    25      56.337  77.438  85.724  1.00  0.00              
ATOM     26  CA  THR    26      56.948  75.160  87.962  1.00  0.00              
ATOM     27  CA  LEU    27      53.760  75.756  90.279  1.00  0.00              
ATOM     28  CA  PRO    28      51.340  76.226  87.692  1.00  0.00              
ATOM     29  CA  VAL    29      51.533  73.679  84.977  1.00  0.00              
ATOM     30  CA  ASP    30      49.671  70.455  84.066  1.00  0.00              
ATOM     31  CA  PRO    31      49.582  71.021  80.667  1.00  0.00              
ATOM     32  CA  HIS    32      50.824  68.046  78.715  1.00  0.00              
ATOM     33  CA  LEU    33      54.208  68.729  79.827  1.00  0.00              
ATOM     34  CA  GLU    34      54.899  68.330  82.943  1.00  0.00              
ATOM     35  CA  ILE    35      57.286  70.196  84.728  1.00  0.00              
ATOM     36  CA  THR    36      58.230  68.090  87.223  1.00  0.00              
ATOM     37  CA  GLU    37      57.959  65.124  85.428  1.00  0.00              
ATOM     38  CA  ILE    38      59.774  66.215  81.977  1.00  0.00              
ATOM     39  CA  ALA    39      62.750  66.875  84.008  1.00  0.00              
ATOM     40  CA  ASP    40      62.699  63.240  85.076  1.00  0.00              
ATOM     41  CA  ARG    41      61.944  61.521  82.112  1.00  0.00              
ATOM     42  CA  THR    42      64.622  63.326  80.548  1.00  0.00              
ATOM     43  CA  LEU    43      67.406  62.625  82.958  1.00  0.00              
ATOM     44  CA  ARG    44      66.423  58.734  82.195  1.00  0.00              
ATOM     45  CA  ALA    45      66.596  58.893  78.730  1.00  0.00              
ATOM     46  CA  GLY    46      70.271  59.861  78.855  1.00  0.00              
ATOM     47  CA  GLY    47      70.346  63.235  77.057  1.00  0.00              
ATOM     48  CA  PRO    48      72.634  65.401  78.688  1.00  0.00              
ATOM     49  CA  ALA    49      71.186  69.134  77.905  1.00  0.00              
ATOM     50  CA  LEU    50      73.004  72.001  76.838  1.00  0.00              
ATOM     51  CA  LEU    51      70.628  75.248  77.062  1.00  0.00              
ATOM     52  CA  PHE    52      71.732  78.690  75.916  1.00  0.00              
ATOM     53  CA  GLU    53      71.244  81.995  77.027  1.00  0.00              
ATOM     54  CA  ASN    54      72.114  84.514  74.707  1.00  0.00              
ATOM     55  CA  PRO    55      71.668  82.796  71.990  1.00  0.00              
ATOM     56  CA  LYS    56      70.834  84.752  68.955  1.00  0.00              
ATOM     57  CA  GLY    57      73.946  83.953  66.874  1.00  0.00              
ATOM     58  CA  TYR    58      75.702  81.857  69.399  1.00  0.00              
ATOM     59  CA  SER    59      74.366  78.386  67.914  1.00  0.00              
ATOM     60  CA  MET    60      74.116  76.503  71.224  1.00  0.00              
ATOM     61  CA  PRO    61      72.634  72.959  72.105  1.00  0.00              
ATOM     62  CA  VAL    62      69.391  73.079  72.735  1.00  0.00              
ATOM     63  CA  LEU    63      67.249  70.561  75.353  1.00  0.00              
ATOM     64  CA  CYS    64      63.694  71.642  75.959  1.00  0.00              
ATOM     65  CA  ASN    65      62.154  68.810  77.550  1.00  0.00              
ATOM     66  CA  LEU    66      65.417  68.703  79.311  1.00  0.00              
ATOM     67  CA  PHE    67      65.986  71.874  80.306  1.00  0.00              
ATOM     68  CA  GLY    68      62.316  72.996  81.272  1.00  0.00              
ATOM     69  CA  THR    69      59.706  73.737  78.772  1.00  0.00              
ATOM     70  CA  PRO    70      60.155  75.305  75.297  1.00  0.00              
ATOM     71  CA  LYS    71      58.000  78.134  76.341  1.00  0.00              
ATOM     72  CA  ARG    72      60.128  78.924  79.013  1.00  0.00              
ATOM     73  CA  VAL    73      63.326  79.185  77.116  1.00  0.00              
ATOM     74  CA  ALA    74      61.988  81.159  74.472  1.00  0.00              
ATOM     75  CA  MET    75      61.136  83.742  76.710  1.00  0.00              
ATOM     76  CA  GLY    76      64.639  83.788  78.116  1.00  0.00              
ATOM     77  CA  MET    77      66.024  83.953  74.548  1.00  0.00              
ATOM     78  CA  GLY    78      64.227  86.610  73.353  1.00  0.00              
ATOM     79  CA  GLN    79      61.891  86.007  70.779  1.00  0.00              
ATOM     80  CA  GLU    80      58.574  86.487  69.398  1.00  0.00              
ATOM     81  CA  ASP    81      56.678  83.897  68.331  1.00  0.00              
ATOM     82  CA  VAL    82      56.437  80.559  69.734  1.00  0.00              
ATOM     83  CA  SER    83      56.525  79.026  66.074  1.00  0.00              
ATOM     84  CA  ALA    84      59.752  80.843  65.838  1.00  0.00              
ATOM     85  CA  LEU    85      61.501  79.727  68.716  1.00  0.00              
ATOM     86  CA  ARG    86      61.192  76.152  67.497  1.00  0.00              
ATOM     87  CA  GLU    87      62.642  77.159  64.424  1.00  0.00              
ATOM     88  CA  VAL    88      65.418  78.497  66.120  1.00  0.00              
ATOM     89  CA  GLY    89      65.711  74.944  67.743  1.00  0.00              
ATOM     90  CA  LYS    90      65.503  73.133  64.572  1.00  0.00              
ATOM     91  CA  LEU    91      68.414  75.212  63.102  1.00  0.00              
ATOM     92  CA  LEU    92      70.867  74.339  66.131  1.00  0.00              
ATOM     93  CA  ALA    93      69.961  70.355  65.663  1.00  0.00              
ATOM     94  CA  PHE    94      70.733  70.798  61.722  1.00  0.00              
ATOM     95  CA  LEU    95      74.139  72.445  62.432  1.00  0.00              
ATOM     96  CA  LYS    96      75.375  70.666  64.922  1.00  0.00              
ATOM    314  CA  ASP   314     107.049  22.563  47.174  1.00  0.00              
ATOM    315  CA  ALA   315     108.423  25.538  48.080  1.00  0.00              
ATOM    316  CA  ILE   316     106.096  28.608  47.176  1.00  0.00              
ATOM    317  CA  TYR   317     107.081  31.800  47.007  1.00  0.00              
ATOM    318  CA  HIS   318     105.400  34.290  46.446  1.00  0.00              
ATOM    319  CA  SER   319     106.690  37.926  45.965  1.00  0.00              
ATOM    320  CA  THR   320     104.907  40.378  46.227  1.00  0.00              
ATOM    321  CA  TYR   321     105.993  44.021  45.345  1.00  0.00              
ATOM    322  CA  THR   322     104.617  47.456  46.102  1.00  0.00              
ATOM    323  CA  GLY   323     106.485  50.286  44.755  1.00  0.00              
ATOM    324  CA  ARG   324     107.568  52.754  47.738  1.00  0.00              
ATOM    325  CA  PRO   325     109.428  52.381  50.491  1.00  0.00              
ATOM    326  CA  PRO   326     109.001  50.677  53.809  1.00  0.00              
ATOM    327  CA  ASP   327     110.799  53.117  55.869  1.00  0.00              
ATOM    328  CA  GLU   328     114.077  52.381  56.942  1.00  0.00              
ATOM    329  CA  PRO   329     113.050  52.509  60.626  1.00  0.00              
ATOM    330  CA  ALA   330     115.146  50.114  62.390  1.00  0.00              
ATOM    331  CA  VAL   331     112.950  49.914  65.756  1.00  0.00              
ATOM    332  CA  LEU   332     110.033  50.247  63.782  1.00  0.00              
ATOM    333  CA  GLY   333     110.691  48.202  60.729  1.00  0.00              
ATOM    334  CA  VAL   334     111.906  45.216  62.619  1.00  0.00              
ATOM    335  CA  ALA   335     108.831  44.738  64.607  1.00  0.00              
ATOM    336  CA  LEU   336     106.601  44.639  61.664  1.00  0.00              
ATOM    337  CA  ASN   337     108.746  42.060  59.866  1.00  0.00              
ATOM    338  CA  GLU   338     109.126  39.642  62.456  1.00  0.00              
ATOM    339  CA  VAL   339     105.851  39.503  63.583  1.00  0.00              
ATOM    340  CA  PHE   340     104.303  38.871  60.239  1.00  0.00              
ATOM    341  CA  VAL   341     106.406  36.915  58.662  1.00  0.00              
ATOM    342  CA  PRO   342     106.531  34.344  61.507  1.00  0.00              
ATOM    343  CA  ILE   343     103.011  33.816  61.838  1.00  0.00              
ATOM    344  CA  LEU   344     102.645  33.559  57.903  1.00  0.00              
ATOM    345  CA  GLN   345     104.925  31.222  57.746  1.00  0.00              
ATOM    346  CA  LYS   346     103.361  29.197  60.286  1.00  0.00              
ATOM    347  CA  GLN   347     100.407  28.915  58.257  1.00  0.00              
TER                                                                             
END
