
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  124 (  124),  selected  124 , name T0356TS599_5-D1
# Molecule2: number of CA atoms  124 (  963),  selected  124 , name T0356_D1.pdb
# PARAMETERS: T0356TS599_5-D1.T0356_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43        46 - 88          4.91    28.93
  LONGEST_CONTINUOUS_SEGMENT:    43        47 - 89          4.99    28.24
  LCS_AVERAGE:     27.69

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    29        68 - 96          1.70    31.01
  LCS_AVERAGE:     14.22

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        80 - 95          0.98    32.52
  LONGEST_CONTINUOUS_SEGMENT:    16        81 - 96          0.90    33.53
  LCS_AVERAGE:      9.32

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  124
LCS_GDT     N       7     N       7      3   17   31     0    3    5   10   15   19   22   27   30   31   33   35   38   41   44   47   49   52   53   54 
LCS_GDT     D       8     D       8     15   17   31     8   13   14   16   18   21   22   27   30   31   33   35   36   41   44   45   49   52   53   56 
LCS_GDT     L       9     L       9     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     R      10     R      10     15   17   31     8   13   14   16   19   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     D      11     D      11     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     F      12     F      12     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      13     L      13     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     T      14     T      14     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      15     L      15     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      16     L      16     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     E      17     E      17     15   17   31     8   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     Q      18     Q      18     15   17   31     7   13   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     Q      19     Q      19     15   17   31     7   13   14   16   18   21   22   27   30   31   33   35   38   41   44   47   49   52   53   56 
LCS_GDT     G      20     G      20     15   17   31     6   13   14   16   18   21   22   27   30   31   33   35   38   40   44   47   49   52   53   56 
LCS_GDT     E      21     E      21     15   17   31     3    5    9   16   17   21   22   25   28   30   33   35   38   40   42   45   49   52   53   56 
LCS_GDT     L      22     L      22     15   17   31     3    9   14   16   18   21   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     K      23     K      23     13   17   31     3    6   12   16   18   21   22   27   30   31   33   35   38   41   44   47   49   52   53   56 
LCS_GDT     R      24     R      24      3    4   31     3    3    3    3    9   13   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     I      25     I      25      3    6   31     3    3    3    8   11   16   22   27   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     T      26     T      26      3    6   31     3    3    3    8   19   20   22   26   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      27     L      27      7    8   31     3    6    7    8   11   16   22   27   30   31   33   36   38   41   44   47   49   52   53   54 
LCS_GDT     P      28     P      28      7    8   31     3    6    7    7   10   16   20   24   26   29   32   36   38   41   44   47   49   52   53   54 
LCS_GDT     V      29     V      29      7    8   31     3    6    7    8   13   16   22   27   30   31   33   36   38   41   44   47   49   52   53   54 
LCS_GDT     D      30     D      30      7    8   31     3    6    7    8   11   16   22   26   30   30   33   35   36   38   44   47   49   52   53   54 
LCS_GDT     P      31     P      31      7    8   31     3    6    7    7    7   14   21   26   30   30   32   35   36   36   38   40   46   49   53   54 
LCS_GDT     H      32     H      32      7    8   31     3    6    7   10   13   17   22   27   30   31   33   35   36   38   39   47   49   52   53   54 
LCS_GDT     L      33     L      33      7    8   31     3    4    7    7    7    7   10   17   25   31   33   35   38   41   44   47   49   52   53   54 
LCS_GDT     E      34     E      34     15   18   31     5    9   15   16   19   20   22   25   28   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     I      35     I      35     15   18   31     5   13   15   16   19   20   22   25   28   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     T      36     T      36     15   18   31     5   13   15   16   19   20   22   24   28   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     E      37     E      37     15   18   31     9   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     I      38     I      38     15   18   35     9   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     A      39     A      39     15   18   37     9   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     D      40     D      40     15   18   37     9   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     R      41     R      41     15   18   37     3   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     T      42     T      42     15   18   41     9   13   15   16   19   20   22   24   27   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      43     L      43     15   18   41     9   13   15   16   19   20   22   24   27   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     R      44     R      44     15   18   41     9   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     A      45     A      45     15   18   42     9   13   15   16   19   20   22   24   29   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     G      46     G      46     15   18   43     9   13   15   16   19   20   22   24   29   32   33   36   38   41   44   47   49   52   53   54 
LCS_GDT     G      47     G      47     15   18   43     4   13   15   16   19   20   27   28   30   31   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     P      48     P      48     15   18   43     9   13   15   16   19   20   22   24   27   30   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     A      49     A      49     15   18   43     5    7    9   16   19   20   22   24   29   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      50     L      50      9   18   43     5    8   13   16   16   19   20   24   29   32   33   36   38   41   44   45   49   52   53   56 
LCS_GDT     L      51     L      51      9   18   43     5    7    9   11   15   19   19   24   29   32   33   36   38   41   43   45   49   52   53   56 
LCS_GDT     F      52     F      52      9   11   43     5    7    9   11   15   19   19   24   29   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     E      53     E      53      9   11   43     5    7    9   11   15   19   19   24   29   32   33   36   37   41   43   45   48   50   51   54 
LCS_GDT     N      54     N      54      9   11   43     3    7    9   10   11   19   19   24   29   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     P      55     P      55      9   11   43     3    7    9   11   15   19   19   24   29   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     K      56     K      56      9   11   43     4    7    9   10   15   19   19   23   29   32   33   36   37   41   43   45   48   50   53   56 
LCS_GDT     G      57     G      57      7   11   43     4    6    8    9   12   16   19   24   29   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     Y      58     Y      58      7   11   43     4    6    8    9   12   15   19   24   29   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     S      59     S      59      7   11   43     4    6    8    9   10   13   18   23   29   32   33   36   38   41   43   45   48   52   53   56 
LCS_GDT     M      60     M      60      7   11   43     5    6    8    9   11   13   19   23   29   32   33   36   38   41   44   45   49   52   53   56 
LCS_GDT     P      61     P      61      7   11   43     5    6    7    9   19   20   22   24   29   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     V      62     V      62      7    8   43     5    6    7    9   14   20   21   26   29   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     L      63     L      63      7    8   43     5    6    7   10   17   21   22   27   30   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     C      64     C      64      7    8   43     5    6    7   13   17   21   22   27   30   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     N      65     N      65      7    8   43     3    6    7   12   18   21   22   27   30   31   33   36   38   41   43   47   49   52   53   56 
LCS_GDT     L      66     L      66      4    8   43     3    5    5    7   18   21   22   27   30   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     F      67     F      67      4   28   43     3    5    9   10   11   15   22   27   30   32   33   36   38   41   43   47   49   52   53   56 
LCS_GDT     G      68     G      68     12   29   43     3   10   17   25   29   29   29   29   30   32   33   36   38   41   44   47   49   52   53   56 
LCS_GDT     T      69     T      69     12   29   43     8   14   17   25   29   29   29   29   30   32   33   36   38   41   43   45   49   52   53   56 
LCS_GDT     P      70     P      70     12   29   43     8   14   17   25   29   29   29   29   30   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     K      71     K      71     12   29   43     8   14   17   25   29   29   29   29   30   32   33   36   38   41   43   45   48   50   53   56 
LCS_GDT     R      72     R      72     12   29   43     8   14   17   24   29   29   29   29   30   32   33   36   38   41   43   45   48   49   51   56 
LCS_GDT     V      73     V      73     12   29   43     8   14   17   25   29   29   29   29   30   32   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     A      74     A      74     12   29   43     8   14   17   25   29   29   29   29   30   32   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     M      75     M      75     12   29   43     8   14   17   25   29   29   29   29   30   31   33   35   38   41   43   45   48   49   51   52 
LCS_GDT     G      76     G      76     12   29   43     8   14   17   25   29   29   29   29   30   30   32   35   38   41   43   45   48   49   51   52 
LCS_GDT     M      77     M      77     12   29   43     4   14   17   25   29   29   29   29   30   30   32   35   38   41   43   45   48   49   51   52 
LCS_GDT     G      78     G      78     12   29   43     4   14   17   25   29   29   29   29   30   30   32   35   38   41   43   45   48   49   51   52 
LCS_GDT     Q      79     Q      79     12   29   43     4   14   17   25   29   29   29   29   30   32   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     E      80     E      80     16   29   43     3    7   15   20   29   29   29   29   30   32   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     D      81     D      81     16   29   43     6   12   15   25   29   29   29   29   30   32   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     V      82     V      82     16   29   43     3    7   15   20   29   29   29   29   30   30   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     S      83     S      83     16   29   43     4    7   15   25   29   29   29   29   30   30   32   35   38   41   43   45   48   49   51   52 
LCS_GDT     A      84     A      84     16   29   43     3   12   15   25   29   29   29   29   30   30   33   36   38   41   43   45   48   49   51   52 
LCS_GDT     L      85     L      85     16   29   43     7   12   17   25   29   29   29   29   30   30   32   36   38   41   43   45   48   49   51   52 
LCS_GDT     R      86     R      86     16   29   43     9   14   17   25   29   29   29   29   30   30   31   33   38   41   43   45   48   49   51   52 
LCS_GDT     E      87     E      87     16   29   43     9   12   15   25   29   29   29   29   30   30   31   35   38   41   43   45   48   49   51   52 
LCS_GDT     V      88     V      88     16   29   43     9   12   15   25   29   29   29   29   30   30   32   35   38   41   43   45   48   49   51   52 
LCS_GDT     G      89     G      89     16   29   43     9   14   17   25   29   29   29   29   30   30   31   33   38   41   43   45   48   49   51   52 
LCS_GDT     K      90     K      90     16   29   37     9   12   17   25   29   29   29   29   30   30   31   33   35   41   43   45   48   49   51   52 
LCS_GDT     L      91     L      91     16   29   37     9   12   15   25   29   29   29   29   30   30   31   35   38   41   43   45   48   49   51   52 
LCS_GDT     L      92     L      92     16   29   37     9   12   15   25   29   29   29   29   30   30   31   33   38   41   43   45   48   49   51   52 
LCS_GDT     A      93     A      93     16   29   37     9   14   17   25   29   29   29   29   30   30   31   33   34   36   37   42   43   44   47   49 
LCS_GDT     F      94     F      94     16   29   37     9   12   15   25   29   29   29   29   30   30   31   33   35   38   41   43   46   49   51   52 
LCS_GDT     L      95     L      95     16   29   37     6   12   15   22   29   29   29   29   30   30   31   33   38   41   43   45   48   49   51   52 
LCS_GDT     K      96     K      96     16   29   37     4   14   17   25   29   29   29   29   30   30   31   33   34   36   37   42   43   43   47   48 
LCS_GDT     D     314     D     314      7   11   15     0    4    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     A     315     A     315      7   11   15     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     I     316     I     316      7   11   15     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     Y     317     Y     317      7   11   15     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     H     318     H     318      7   11   15     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     S     319     S     319      7   11   15     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     T     320     T     320      7   11   15     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     Y     321     Y     321      7   11   27     3    5    7    9   11   12   13   13   15   17   19   20   22   23   26   27   29   32   32   33 
LCS_GDT     T     322     T     322      6   11   27     3    5    5    9   11   12   13   13   18   20   20   22   24   24   26   27   29   32   32   33 
LCS_GDT     G     323     G     323      5   11   27     3    5    5    8   11   12   13   16   21   23   24   24   24   25   25   26   29   32   32   33 
LCS_GDT     R     324     R     324      4   11   27     3    5    5    8   11   15   19   20   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     P     325     P     325      4    9   27     3    5    5    6   10   18   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     P     326     P     326      4    8   27     2    5    5    5    8   12   18   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     D     327     D     327      3    6   27     3    3    3    4    6   11   15   21   23   23   24   24   25   25   25   27   29   32   32   33 
LCS_GDT     E     328     E     328      3    7   27     3    3    4   12   18   19   20   21   23   23   24   24   25   25   25   26   27   27   28   30 
LCS_GDT     P     329     P     329      3    7   27     3    3    3    5    6    7    8    9   19   20   23   24   24   25   25   25   29   32   32   33 
LCS_GDT     A     330     A     330      6   18   27     3    4    7   14   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     V     331     V     331     11   18   27     4    9   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     L     332     L     332     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   25   27   29   32   32   33 
LCS_GDT     G     333     G     333     15   18   27     3    9   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     V     334     V     334     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     A     335     A     335     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     L     336     L     336     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     N     337     N     337     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     E     338     E     338     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     V     339     V     339     15   18   27     5   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     F     340     F     340     15   18   27     5   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     V     341     V     341     15   18   27     5   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     P     342     P     342     15   18   27     3    9   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     I     343     I     343     15   18   27     4   10   15   17   18   19   20   21   23   23   24   24   25   25   26   27   29   32   32   33 
LCS_GDT     L     344     L     344     15   18   27     5   10   15   17   18   19   20   21   23   23   24   24   25   25   25   26   29   32   32   33 
LCS_GDT     Q     345     Q     345     15   18   27     5   10   15   17   18   19   20   21   23   23   24   24   25   25   25   26   29   32   32   33 
LCS_GDT     K     346     K     346     15   18   27     5   10   15   17   18   19   20   21   23   23   24   24   25   25   26   26   29   32   32   33 
LCS_GDT     Q     347     Q     347     14   18   27     5    9   15   17   17   19   20   21   23   23   24   24   25   25   25   26   27   30   31   33 
LCS_AVERAGE  LCS_A:  17.07  (   9.32   14.22   27.69 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     14     17     25     29     29     29     29     30     32     33     36     38     41     44     47     49     52     53     56 
GDT PERCENT_CA   7.26  11.29  13.71  20.16  23.39  23.39  23.39  23.39  24.19  25.81  26.61  29.03  30.65  33.06  35.48  37.90  39.52  41.94  42.74  45.16
GDT RMS_LOCAL    0.31   0.76   0.91   1.55   1.70   1.70   1.70   1.70   2.11   3.65   3.33   4.14   4.34   4.68   5.06   5.49   5.59   5.85   6.01   6.54
GDT RMS_ALL_CA  41.34  31.50  31.41  31.11  31.01  31.01  31.01  31.01  30.66  32.66  37.86  31.13  39.93  29.18  39.99  39.50  39.73  39.57  39.45  38.29

#      Molecule1      Molecule2       DISTANCE
LGA    N       7      N       7         34.644
LGA    D       8      D       8         29.106
LGA    L       9      L       9         23.741
LGA    R      10      R      10         29.406
LGA    D      11      D      11         31.411
LGA    F      12      F      12         24.851
LGA    L      13      L      13         25.400
LGA    T      14      T      14         31.956
LGA    L      15      L      15         29.328
LGA    L      16      L      16         24.309
LGA    E      17      E      17         30.052
LGA    Q      18      Q      18         33.368
LGA    Q      19      Q      19         27.728
LGA    G      20      G      20         27.880
LGA    E      21      E      21         21.267
LGA    L      22      L      22         23.086
LGA    K      23      K      23         28.449
LGA    R      24      R      24         31.458
LGA    I      25      I      25         29.588
LGA    T      26      T      26         33.860
LGA    L      27      L      27         37.957
LGA    P      28      P      28         36.785
LGA    V      29      V      29         32.800
LGA    D      30      D      30         31.339
LGA    P      31      P      31         30.450
LGA    H      32      H      32         30.226
LGA    L      33      L      33         26.799
LGA    E      34      E      34         25.809
LGA    I      35      I      35         19.441
LGA    T      36      T      36         18.262
LGA    E      37      E      37         22.711
LGA    I      38      I      38         19.056
LGA    A      39      A      39         13.786
LGA    D      40      D      40         17.104
LGA    R      41      R      41         18.451
LGA    T      42      T      42         12.224
LGA    L      43      L      43         12.321
LGA    R      44      R      44         17.851
LGA    A      45      A      45         14.637
LGA    G      46      G      46         11.574
LGA    G      47      G      47          7.727
LGA    P      48      P      48         10.009
LGA    A      49      A      49         10.062
LGA    L      50      L      50         13.126
LGA    L      51      L      51         15.801
LGA    F      52      F      52         19.230
LGA    E      53      E      53         22.074
LGA    N      54      N      54         25.571
LGA    P      55      P      55         21.815
LGA    K      56      K      56         24.328
LGA    G      57      G      57         24.398
LGA    Y      58      Y      58         24.000
LGA    S      59      S      59         27.613
LGA    M      60      M      60         22.592
LGA    P      61      P      61         22.726
LGA    V      62      V      62         16.576
LGA    L      63      L      63         14.957
LGA    C      64      C      64         10.268
LGA    N      65      N      65          9.819
LGA    L      66      L      66         10.244
LGA    F      67      F      67          6.466
LGA    G      68      G      68          1.128
LGA    T      69      T      69          1.231
LGA    P      70      P      70          1.024
LGA    K      71      K      71          1.533
LGA    R      72      R      72          2.033
LGA    V      73      V      73          0.820
LGA    A      74      A      74          1.751
LGA    M      75      M      75          1.854
LGA    G      76      G      76          1.881
LGA    M      77      M      77          1.789
LGA    G      78      G      78          1.402
LGA    Q      79      Q      79          0.698
LGA    E      80      E      80          2.718
LGA    D      81      D      81          1.858
LGA    V      82      V      82          2.627
LGA    S      83      S      83          1.912
LGA    A      84      A      84          1.605
LGA    L      85      L      85          1.305
LGA    R      86      R      86          1.239
LGA    E      87      E      87          1.662
LGA    V      88      V      88          2.005
LGA    G      89      G      89          0.913
LGA    K      90      K      90          1.223
LGA    L      91      L      91          2.045
LGA    L      92      L      92          1.704
LGA    A      93      A      93          1.523
LGA    F      94      F      94          2.087
LGA    L      95      L      95          2.175
LGA    K      96      K      96          1.650
LGA    D     314      D     314         77.139
LGA    A     315      A     315         72.693
LGA    I     316      I     316         70.605
LGA    Y     317      Y     317         67.682
LGA    H     318      H     318         62.574
LGA    S     319      S     319         61.358
LGA    T     320      T     320         58.778
LGA    Y     321      Y     321         57.332
LGA    T     322      T     322         54.689
LGA    G     323      G     323         53.647
LGA    R     324      R     324         52.155
LGA    P     325      P     325         47.889
LGA    P     326      P     326         48.877
LGA    D     327      D     327         43.557
LGA    E     328      E     328         42.265
LGA    P     329      P     329         42.123
LGA    A     330      A     330         44.226
LGA    V     331      V     331         41.903
LGA    L     332      L     332         38.400
LGA    G     333      G     333         41.335
LGA    V     334      V     334         42.405
LGA    A     335      A     335         38.497
LGA    L     336      L     336         38.018
LGA    N     337      N     337         41.777
LGA    E     338      E     338         40.158
LGA    V     339      V     339         36.343
LGA    F     340      F     340         39.164
LGA    V     341      V     341         42.186
LGA    P     342      P     342         38.093
LGA    I     343      I     343         38.615
LGA    L     344      L     344         44.116
LGA    Q     345      Q     345         43.987
LGA    K     346      K     346         40.815
LGA    Q     347      Q     347         44.974

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  124  124    4.0     29    1.70    23.185    21.119     1.607

LGA_LOCAL      RMSD =  1.704  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 31.012  Number of atoms =  124 
Std_ALL_ATOMS  RMSD = 21.810  (standard rmsd on all 124 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.767522 * X  +   0.186420 * Y  +  -0.613317 * Z  +  90.356300
  Y_new =  -0.145456 * X  +   0.982470 * Y  +   0.116598 * Z  +  69.657097
  Z_new =   0.624302 * X  +  -0.000281 * Y  +   0.781183 * Z  +  56.695663 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.000359    3.141233  [ DEG:    -0.0206    179.9794 ]
  Theta =  -0.674238   -2.467355  [ DEG:   -38.6310   -141.3690 ]
  Phi   =  -0.187293    2.954300  [ DEG:   -10.7311    169.2689 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_5-D1                               
REMARK     2: T0356_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_5-D1.T0356_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  124  124   4.0   29   1.70  21.119    21.81
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_5-D1
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      7  CA  ASN     7      57.539  53.752  88.472  1.00  0.00              
ATOM      8  CA  ASP     8      56.968  57.250  88.056  1.00  0.00              
ATOM      9  CA  LEU     9      59.316  57.857  85.295  1.00  0.00              
ATOM     10  CA  ARG    10      57.942  55.114  83.451  1.00  0.00              
ATOM     11  CA  ASP    11      54.443  57.280  83.495  1.00  0.00              
ATOM     12  CA  PHE    12      55.769  60.472  82.371  1.00  0.00              
ATOM     13  CA  LEU    13      57.493  58.966  79.114  1.00  0.00              
ATOM     14  CA  THR    14      54.398  57.322  78.390  1.00  0.00              
ATOM     15  CA  LEU    15      52.478  60.530  78.716  1.00  0.00              
ATOM     16  CA  LEU    16      54.666  62.266  76.759  1.00  0.00              
ATOM     17  CA  GLU    17      54.080  59.798  74.019  1.00  0.00              
ATOM     18  CA  GLN    18      50.158  60.088  74.292  1.00  0.00              
ATOM     19  CA  GLN    19      50.351  63.807  73.516  1.00  0.00              
ATOM     20  CA  GLY    20      52.540  63.780  70.800  1.00  0.00              
ATOM     21  CA  GLU    21      55.183  66.785  71.617  1.00  0.00              
ATOM     22  CA  LEU    22      57.396  64.307  72.993  1.00  0.00              
ATOM     23  CA  LYS    23      58.241  63.204  69.441  1.00  0.00              
ATOM     24  CA  ARG    24      57.853  66.322  67.269  1.00  0.00              
ATOM     25  CA  ILE    25      60.358  68.213  69.706  1.00  0.00              
ATOM     26  CA  THR    26      62.732  65.009  69.598  1.00  0.00              
ATOM     27  CA  LEU    27      62.900  66.233  66.168  1.00  0.00              
ATOM     28  CA  PRO    28      63.209  69.985  67.395  1.00  0.00              
ATOM     29  CA  VAL    29      66.844  69.901  69.009  1.00  0.00              
ATOM     30  CA  ASP    30      67.302  72.864  70.964  1.00  0.00              
ATOM     31  CA  PRO    31      70.237  74.500  69.796  1.00  0.00              
ATOM     32  CA  HIS    32      71.560  75.144  73.406  1.00  0.00              
ATOM     33  CA  LEU    33      70.503  71.890  74.976  1.00  0.00              
ATOM     34  CA  GLU    34      72.941  70.722  77.675  1.00  0.00              
ATOM     35  CA  ILE    35      71.236  67.795  79.317  1.00  0.00              
ATOM     36  CA  THR    36      73.395  67.723  82.171  1.00  0.00              
ATOM     37  CA  GLU    37      73.671  71.569  82.798  1.00  0.00              
ATOM     38  CA  ILE    38      69.740  71.035  82.015  1.00  0.00              
ATOM     39  CA  ALA    39      69.277  68.771  84.798  1.00  0.00              
ATOM     40  CA  ASP    40      70.483  71.088  87.200  1.00  0.00              
ATOM     41  CA  ARG    41      68.400  73.820  85.669  1.00  0.00              
ATOM     42  CA  THR    42      65.103  71.976  86.034  1.00  0.00              
ATOM     43  CA  LEU    43      65.761  70.900  89.444  1.00  0.00              
ATOM     44  CA  ARG    44      66.749  74.336  90.874  1.00  0.00              
ATOM     45  CA  ALA    45      63.338  75.291  89.686  1.00  0.00              
ATOM     46  CA  GLY    46      61.063  72.809  90.667  1.00  0.00              
ATOM     47  CA  GLY    47      60.128  71.201  87.585  1.00  0.00              
ATOM     48  CA  PRO    48      60.196  67.889  86.189  1.00  0.00              
ATOM     49  CA  ALA    49      62.966  66.571  83.766  1.00  0.00              
ATOM     50  CA  LEU    50      64.889  63.610  84.684  1.00  0.00              
ATOM     51  CA  LEU    51      68.512  62.970  83.822  1.00  0.00              
ATOM     52  CA  PHE    52      69.967  59.183  84.451  1.00  0.00              
ATOM     53  CA  GLU    53      73.397  58.727  84.643  1.00  0.00              
ATOM     54  CA  ASN    54      74.279  55.156  84.704  1.00  0.00              
ATOM     55  CA  PRO    55      70.961  53.862  85.225  1.00  0.00              
ATOM     56  CA  LYS    56      72.096  50.360  86.256  1.00  0.00              
ATOM     57  CA  GLY    57      68.519  48.784  85.750  1.00  0.00              
ATOM     58  CA  TYR    58      66.672  51.168  83.732  1.00  0.00              
ATOM     59  CA  SER    59      67.126  52.645  80.601  1.00  0.00              
ATOM     60  CA  MET    60      66.772  56.275  80.929  1.00  0.00              
ATOM     61  CA  PRO    61      65.873  58.867  78.468  1.00  0.00              
ATOM     62  CA  VAL    62      65.755  62.535  79.446  1.00  0.00              
ATOM     63  CA  LEU    63      63.043  64.512  78.411  1.00  0.00              
ATOM     64  CA  CYS    64      62.868  68.253  78.779  1.00  0.00              
ATOM     65  CA  ASN    65      61.158  70.406  76.537  1.00  0.00              
ATOM     66  CA  LEU    66      59.582  67.152  77.733  1.00  0.00              
ATOM     67  CA  PHE    67      57.944  68.003  81.101  1.00  0.00              
ATOM     68  CA  GLY    68      59.014  71.347  82.135  1.00  0.00              
ATOM     69  CA  THR    69      56.884  73.908  80.501  1.00  0.00              
ATOM     70  CA  PRO    70      57.217  75.832  77.173  1.00  0.00              
ATOM     71  CA  LYS    71      58.614  78.996  78.774  1.00  0.00              
ATOM     72  CA  ARG    72      60.931  77.108  81.162  1.00  0.00              
ATOM     73  CA  VAL    73      62.249  75.735  77.747  1.00  0.00              
ATOM     74  CA  ALA    74      62.498  78.701  76.193  1.00  0.00              
ATOM     75  CA  MET    75      64.468  80.851  78.715  1.00  0.00              
ATOM     76  CA  GLY    76      66.578  77.824  79.440  1.00  0.00              
ATOM     77  CA  MET    77      67.464  77.779  75.540  1.00  0.00              
ATOM     78  CA  GLY    78      68.134  81.480  75.219  1.00  0.00              
ATOM     79  CA  GLN    79      65.595  82.264  72.512  1.00  0.00              
ATOM     80  CA  GLU    80      63.627  85.073  72.649  1.00  0.00              
ATOM     81  CA  ASP    81      60.351  84.069  71.008  1.00  0.00              
ATOM     82  CA  VAL    82      59.565  80.775  69.547  1.00  0.00              
ATOM     83  CA  SER    83      59.268  81.075  66.447  1.00  0.00              
ATOM     84  CA  ALA    84      62.476  82.023  66.232  1.00  0.00              
ATOM     85  CA  LEU    85      63.662  78.680  67.555  1.00  0.00              
ATOM     86  CA  ARG    86      61.892  76.848  64.802  1.00  0.00              
ATOM     87  CA  GLU    87      63.991  79.249  62.533  1.00  0.00              
ATOM     88  CA  VAL    88      67.112  78.277  63.818  1.00  0.00              
ATOM     89  CA  GLY    89      66.265  74.741  63.274  1.00  0.00              
ATOM     90  CA  LYS    90      66.110  75.621  59.848  1.00  0.00              
ATOM     91  CA  LEU    91      69.384  77.369  59.541  1.00  0.00              
ATOM     92  CA  LEU    92      70.989  74.479  61.354  1.00  0.00              
ATOM     93  CA  ALA    93      69.754  71.721  59.312  1.00  0.00              
ATOM     94  CA  PHE    94      71.014  73.347  56.144  1.00  0.00              
ATOM     95  CA  LEU    95      73.995  74.018  57.286  1.00  0.00              
ATOM     96  CA  LYS    96      74.666  70.689  58.756  1.00  0.00              
ATOM    314  CA  ASP   314     116.942  56.344  33.848  1.00  0.00              
ATOM    315  CA  ALA   315     115.511  59.415  34.425  1.00  0.00              
ATOM    316  CA  ILE   316     113.217  58.815  37.171  1.00  0.00              
ATOM    317  CA  TYR   317     109.822  59.183  37.046  1.00  0.00              
ATOM    318  CA  HIS   318     107.744  60.139  40.002  1.00  0.00              
ATOM    319  CA  SER   319     103.913  59.427  39.766  1.00  0.00              
ATOM    320  CA  THR   320     102.172  60.810  42.340  1.00  0.00              
ATOM    321  CA  TYR   321      98.442  61.870  42.271  1.00  0.00              
ATOM    322  CA  THR   322      96.931  64.458  43.972  1.00  0.00              
ATOM    323  CA  GLY   323      94.871  63.978  47.208  1.00  0.00              
ATOM    324  CA  ARG   324      91.262  65.129  47.681  1.00  0.00              
ATOM    325  CA  PRO   325      88.438  63.091  48.064  1.00  0.00              
ATOM    326  CA  PRO   326      86.215  61.804  45.031  1.00  0.00              
ATOM    327  CA  ASP   327      82.793  63.027  46.931  1.00  0.00              
ATOM    328  CA  GLU   328      82.809  66.390  46.986  1.00  0.00              
ATOM    329  CA  PRO   329      83.384  67.721  43.443  1.00  0.00              
ATOM    330  CA  ALA   330      86.103  69.865  43.740  1.00  0.00              
ATOM    331  CA  VAL   331      84.918  73.049  45.878  1.00  0.00              
ATOM    332  CA  LEU   332      86.989  74.490  48.435  1.00  0.00              
ATOM    333  CA  GLY   333      90.435  74.385  46.159  1.00  0.00              
ATOM    334  CA  VAL   334      87.859  75.808  43.698  1.00  0.00              
ATOM    335  CA  ALA   335      86.351  78.952  45.342  1.00  0.00              
ATOM    336  CA  LEU   336      89.614  80.739  46.164  1.00  0.00              
ATOM    337  CA  ASN   337      91.572  80.227  43.227  1.00  0.00              
ATOM    338  CA  GLU   338      88.639  81.710  41.341  1.00  0.00              
ATOM    339  CA  VAL   339      88.634  84.960  43.194  1.00  0.00              
ATOM    340  CA  PHE   340      92.026  85.430  43.321  1.00  0.00              
ATOM    341  CA  VAL   341      92.491  84.974  39.673  1.00  0.00              
ATOM    342  CA  PRO   342      90.447  87.391  39.086  1.00  0.00              
ATOM    343  CA  ILE   343      92.403  89.632  40.847  1.00  0.00              
ATOM    344  CA  LEU   344      95.337  89.003  39.371  1.00  0.00              
ATOM    345  CA  GLN   345      94.409  89.326  36.283  1.00  0.00              
ATOM    346  CA  LYS   346      93.412  92.722  36.813  1.00  0.00              
ATOM    347  CA  GLN   347      96.327  93.738  37.902  1.00  0.00              
TER                                                                             
END
