
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356AL316_4-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356AL316_4-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       350 - 366         4.13    31.82
  LONGEST_CONTINUOUS_SEGMENT:    17       421 - 437         4.56    37.44
  LCS_AVERAGE:     10.34

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    10       425 - 434         1.85    34.42
  LCS_AVERAGE:      5.01

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:     8       425 - 432         0.73    36.20
  LCS_AVERAGE:      3.90

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      0    0    0     0    0    0    0    0    4    5    7    7    7    9   11   11   12   12   12   15   15   16   17 
LCS_GDT     P     349     P     349      0    0    0     0    0    0    0    1    4    5    7    7    7    9   11   11   12   12   12   15   15   16   17 
LCS_GDT     E     350     E     350      3    3   17     0    3    3    3    3    4    6   10   12   13   15   18   21   26   27   29   33   34   35   35 
LCS_GDT     I     351     I     351      3    4   17     3    3    4    4    9   10   10   12   13   16   22   24   25   27   28   31   33   34   35   35 
LCS_GDT     V     352     V     352      3    4   17     3    3    4    4    5    5    9   10   12   15   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     D     353     D     353      3    5   17     3    3    7    9   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     F     354     F     354      4    5   17     1    3    4    6   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     Y     355     Y     355      4    5   17     1    3    4    6    7    8   10   14   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     L     356     L     356      4    5   17     0    3    4    9    9   10   14   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     P     357     P     357      4    5   17     3    3    4    5    7    8   10   12   12   15   17   19   23   25   28   31   33   34   35   35 
LCS_GDT     P     358     P     358      3    5   17     3    3    3    4    5    8    9   11   13   15   16   19   23   23   28   31   33   34   35   35 
LCS_GDT     E     359     E     359      3    4   17     3    3    5    5    5    8   10   12   13   15   16   19   23   23   28   31   33   34   35   35 
LCS_GDT     G     360     G     360      3    4   17     3    3    4    6    9   10   11   12   13   15   16   19   23   25   28   31   33   34   35   35 
LCS_GDT     C     361     C     361      4    5   17     3    4    5    6    7    8   10   12   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     S     362     S     362      4    5   17     3    4    5    5    5    8   10   14   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     Y     363     Y     363      4    5   17     3    4    5    6   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     R     364     R     364      4    5   17     3    4    5    5    5   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     L     365     L     365      3    5   17     3    3    3    6   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     A     366     A     366      3    3   17     3    3    3    3    5    8   11   18   19   20   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     V     367     V     367      5    7    7     4    5    5    6    7    7    7    9   10   11   11   12   12   12   13   19   19   20   21   21 
LCS_GDT     V     368     V     368      5    7    7     4    5    5    6    7    7    7    9   10   11   13   13   14   15   18   19   22   24   25   28 
LCS_GDT     T     369     T     369      5    7    7     4    5    5    6    7    7    7    9   10   13   17   17   17   17   20   21   25   25   26   31 
LCS_GDT     I     370     I     370      5    7    7     4    5    5    8   10   11   13   14   15   16   17   17   17   19   22   24   26   29   30   34 
LCS_GDT     K     371     K     371      5    7    7     5    6    7    8   10   11   13   14   15   16   17   17   17   19   23   26   28   31   32   35 
LCS_GDT     K     372     K     372      5    7    7     5    6    7    8   10   11   13   14   15   16   17   17   17   19   25   28   33   34   35   35 
LCS_GDT     Q     373     Q     373      4    7    7     5    6    7    8   10   11   13   14   15   16   17   17   21   27   28   31   33   34   35   35 
LCS_GDT     Y     374     Y     374      4    5    6     3    4    4    4    5    5    8   10   11   13   16   18   19   19   21   23   26   26   29   31 
LCS_GDT     A     375     A     375      4    5    6     3    4    4    4    5    5    5    7   10   13   14   18   19   19   21   23   25   26   27   28 
LCS_GDT     G     376     G     376      4    5    6     3    4    4    4    5    5    8   10   11   13   13   15   16   17   21   22   22   24   25   27 
LCS_GDT     H     377     H     377      4    5    6     3    4    4    4    5    5    5    5    6    7    7   10   15   15   15   18   20   23   24   27 
LCS_GDT     A     378     A     378      3    5    6     3    3    3    4    5    5    5    6    6    7    7    8   11   13   15   17   20   23   24   26 
LCS_GDT     K     379     K     379      3    3    6     3    3    3    3    3    5    6    6    7    7    9   10   13   13   15   17   20   23   24   26 
LCS_GDT     R     380     R     380      7    7    7     5    7    7    9    9   10   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     V     381     V     381      7    7    7     4    7    7    9   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     M     382     M     382      7    7    7     5    7    7    9    9   11   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     M     383     M     383      7    7    7     5    7    7    9   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     G     384     G     384      7    7    7     5    7    7    9   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     V     385     V     385      7    7    7     5    7    7    9    9   10   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     W     386     W     386      7    7    7     4    7    7    9    9   10   11   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     S     387     S     387      4    4   13     3    3    4    5    6    6    9   11   12   13   14   17   19   19   21   22   23   24   26   31 
LCS_GDT     F     388     F     388      4    4   13     3    3    4    4    5    7   10   11   12   13   13   14   16   17   21   22   23   24   26   31 
LCS_GDT     L     389     L     389      4    4   15     3    3    4    5    6    7    9   10   12   13   13   13   15   16   20   22   23   23   26   31 
LCS_GDT     R     390     R     390      4    7   15     3    3    4    4    6    8   10   10   12   13   13   13   15   16   20   22   23   23   26   31 
LCS_GDT     Q     391     Q     391      6    7   15     4    5    6    6    6    8   10   11   12   13   13   13   15   17   20   22   23   23   26   31 
LCS_GDT     F     392     F     392      6    7   15     4    5    6    6    6    8   10   10   11   13   13   13   15   17   18   21   22   22   24   25 
LCS_GDT     M     393     M     393      6    7   15     4    5    6    6    6    8   10   10   11   13   13   13   15   17   18   21   22   22   23   26 
LCS_GDT     Y     394     Y     394      6    7   15     4    5    6    6    6    8   10   10   11   11   12   13   15   16   18   21   22   22   23   26 
LCS_GDT     T     395     T     395      6    7   15     3    5    6    6    6    8   10   10   11   13   13   13   15   16   18   21   22   22   23   23 
LCS_GDT     K     396     K     396      6    7   15     3    4    6    6    6    8   10   10   11   13   13   13   15   15   16   21   22   22   23   23 
LCS_GDT     F     397     F     397      3    5   15     3    3    4    4    6    8   10   10   11   13   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     V     398     V     398      3    5   15     3    3    4    4    6    8   10   10   11   13   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     I     399     I     399      3    3   15     3    3    3    3    4    7   10   10   11   11   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     V     400     V     400      3    4   15     3    3    4    4    5    5    6    9   10   12   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     C     401     C     401      3    4   15     1    3    4    4    5    5    6    8    9   12   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     D     402     D     402      3    4   15     0    3    4    4    5    6    6    8   10   12   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     D     403     D     403      3    4   15     1    3    4    4    4    6    8    9   10   12   13   13   14   15   18   21   22   22   23   23 
LCS_GDT     D     404     D     404      7    7   15     3    6    6    7    7    7    8    9   10   12   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     V     405     V     405      7    7   15     3    6    6    7    7    7    8    9   10   12   13   13   15   17   18   21   22   22   23   23 
LCS_GDT     N     406     N     406      7    7   15     4    6    6    7    7    7    8    9   10   12   13   13   15   17   18   21   22   22   23   26 
LCS_GDT     A     407     A     407      7    7   15     4    6    6    7    7    7    8   10   11   12   13   13   15   17   18   21   22   22   23   24 
LCS_GDT     R     408     R     408      7    7   15     4    6    6    7    7    7    8   10   11   12   13   13   15   17   18   21   22   23   23   25 
LCS_GDT     D     409     D     409      7    7   15     4    6    6    7    7    7   12   14   15   16   17   17   17   18   22   24   25   27   30   33 
LCS_GDT     W     410     W     410      7    7   15     3    3    5    7    7    8   13   14   15   16   17   17   17   19   22   26   27   30   31   33 
LCS_GDT     N     411     N     411      3    3   15     3    3    3    3    5   11   13   14   15   16   17   17   17   19   23   26   27   30   31   33 
LCS_GDT     D     412     D     412      3    4   10     3    3    4    4    4    5    6    6    8   11   12   13   14   16   19   20   22   23   26   31 
LCS_GDT     V     413     V     413      3    4   10     3    3    4    4    4    4    6    6    9   10   11   12   13   16   20   22   23   23   26   31 
LCS_GDT     I     414     I     414      3    4   10     3    3    5    5    5    5    6    6    9   10   11   12   15   16   20   22   23   23   26   31 
LCS_GDT     W     415     W     415      3    4   10     3    3    5    5    5    5    5    6    9   10   11   12   15   16   20   22   23   23   26   31 
LCS_GDT     A     416     A     416      3    4   13     3    3    5    5    6    6    7    8    9   10   11   13   14   16   20   22   23   23   26   31 
LCS_GDT     I     417     I     417      3    4   13     0    3    5    5    6    6    7    8    9   10   11   13   14   16   20   22   23   23   26   31 
LCS_GDT     T     418     T     418      3    3   13     3    3    3    3    6    6    6    8   10   11   12   13   14   16   19   20   22   23   26   31 
LCS_GDT     T     419     T     419      3    8   13     3    3    3    7    7    8    8    9   10   11   12   13   14   16   19   20   22   23   26   31 
LCS_GDT     R     420     R     420      7    8   13     4    7    7    7    7    8    8    9   10   11   12   13   14   16   19   20   22   23   25   26 
LCS_GDT     M     421     M     421      7    8   17     4    7    7    7    7    8    8    9   10   11   12   13   16   17   19   20   22   23   25   31 
LCS_GDT     D     422     D     422      7    8   17     4    7    7    7    7    8    8    9   10   11   13   14   16   17   19   20   22   23   26   31 
LCS_GDT     P     423     P     423      7    8   17     4    7    7    7    7    8    8    9   11   12   13   15   16   17   19   20   22   23   25   31 
LCS_GDT     A     424     A     424      7    9   17     4    7    7    7    7    8   10   11   11   13   13   15   16   17   19   20   22   23   26   31 
LCS_GDT     R     425     R     425      8   10   17     4    7    8    8    9   10   12   12   12   13   13   15   16   17   19   20   22   23   25   31 
LCS_GDT     D     426     D     426      8   10   17     5    7    8    8    9   10   12   12   12   13   13   15   16   17   19   20   22   23   23   24 
LCS_GDT     T     427     T     427      8   10   17     5    7    8    8    9   10   12   12   12   13   13   15   16   17   19   20   22   23   26   31 
LCS_GDT     V     428     V     428      8   10   17     5    7    8    8    9   10   12   12   12   13   13   15   16   17   19   20   22   23   26   31 
LCS_GDT     L     429     L     429      8   10   17     5    7    8    8    9   10   12   12   12   13   13   15   16   17   20   22   23   23   30   31 
LCS_GDT     V     430     V     430      8   10   17     4    7    8    8    9   10   12   12   12   13   13   15   16   17   20   23   29   31   33   35 
LCS_GDT     E     431     E     431      8   10   17     5    7    8    8    9   10   12   12   12   13   13   15   16   17   18   20   21   27   33   35 
LCS_GDT     N     432     N     432      8   10   17     3    7    8    8    9   10   12   12   12   13   13   15   16   17   17   18   21   23   25   30 
LCS_GDT     T     433     T     433      4   10   17     3    3    4    5    7   10   12   12   12   13   13   15   16   17   17   18   19   21   23   25 
LCS_GDT     P     434     P     434      4   10   17     3    3    4    7    9   10   12   12   12   13   13   15   16   17   17   18   19   21   22   22 
LCS_GDT     I     435     I     435      4    7   17     3    3    4    5    6    7    8    9   10   13   13   15   16   17   17   18   19   21   22   22 
LCS_GDT     D     436     D     436      3    7   17     3    3    4    5    7   10   12   12   12   13   13   15   16   17   17   18   19   22   22   22 
LCS_GDT     Y     437     Y     437      3    7   17     3    3    4    8    9   10   12   12   12   13   13   15   16   17   17   18   19   22   22   22 
LCS_GDT     L     438     L     438      3    5   10     0    3    3    4    4    5    6    8    8    9    9   11   11   16   20   23   26   30   30   31 
LCS_GDT     D     439     D     439      4    5   10     3    4    4    4    5    6    6    8    8    9    9   11   11   15   19   20   22   23   26   30 
LCS_GDT     F     440     F     440      4    5   10     3    4    4    4    5    6    6    8    8    9   10   11   12   15   19   20   23   23   24   30 
LCS_GDT     A     441     A     441      4    5   10     3    4    4    4    5    6    6    8    9    9   12   13   14   16   19   22   23   23   26   31 
LCS_GDT     S     442     S     442      4    5   11     3    4    4    4    5    6    6    8    9    9   10   12   14   16   20   22   25   29   33   35 
LCS_GDT     P     443     P     443      4    5   11     3    3    4    4    5    6    6    8    9    9   13   18   22   27   28   31   33   34   35   35 
LCS_GDT     V     444     V     444      4    4   11     3    3    4    4    7   10   14   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     S     445     S     445      3    8   11     3    3    5    7   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     G     446     G     446      3    8   11     3    3    7    8   10   13   15   18   19   21   22   23   25   26   28   31   33   34   35   35 
LCS_GDT     L     447     L     447      6    8   11     5    6    7    8   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     G     448     G     448      6    8   11     5    6    6    6   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     S     449     S     449      6    8   11     5    6    6    7   10   13   15   18   19   21   23   24   25   27   28   31   33   34   35   35 
LCS_GDT     K     450     K     450      6    8   11     5    6    7    8   10   11   13   14   15   16   17   22   24   27   27   30   33   34   35   35 
LCS_GDT     M     451     M     451      6    8   11     5    6    7    8   10   11   13   14   15   16   17   17   21   26   27   28   30   33   35   35 
LCS_GDT     G     452     G     452      6    8   11     5    6    6    6    7    8   10   11   13   16   17   17   17   19   23   26   27   30   32   35 
LCS_GDT     L     453     L     453      4    6   10     3    3    4    5    5    5    7    8    9   10   10   10   11   13   14   18   19   22   23   25 
LCS_GDT     D     454     D     454      4    6   11     3    3    4    5    5    7    7    8    9   10   10   10   11   13   15   18   19   22   23   25 
LCS_GDT     A     455     A     455      4    7   11     3    3    4    6    6    7    8    8    9   10   10   10   11   13   15   16   16   20   23   25 
LCS_GDT     T     456     T     456      5    7   11     3    5    5    6    6    7    8    8    9   10   10   10   11   13   14   15   16   20   23   25 
LCS_GDT     N     457     N     457      5    7   11     4    5    5    6    6    7    8    8    9   10   10   10   11   13   14   15   16   20   23   25 
LCS_GDT     K     458     K     458      5    7   11     4    5    5    6    6    7    8    8    9   10   10   10   11   13   14   14   16   18   23   25 
LCS_GDT     W     459     W     459      5    7   11     4    5    5    6    6    7    8    8    9   10   10   10   11   13   14   14   14   18   21   25 
LCS_GDT     P     460     P     460      5    7   11     4    5    5    6    6    7    8    8    8   10   10   10   11   13   14   14   14   16   19   22 
LCS_GDT     G     461     G     461      5    7   11     3    3    5    6    6    7    8    8    8    8    9   10   10   13   14   14   14   15   15   15 
LCS_GDT     E     462     E     462      4    4   11     3    3    4    4    4    5    6    7    7    8    8    9    9   10   10   11   11   13   13   14 
LCS_GDT     T     463     T     463      4    4   11     3    3    4    4    4    5    6    7    8    8    9   10   10   10   14   14   14   15   15   15 
LCS_GDT     Q     464     Q     464      3    4   11     3    3    3    3    4    5    8    8    8    8    9   10   11   13   14   14   14   15   15   15 
LCS_GDT     R     465     R     465      3    3    3     3    3    3    3    3    4    5    5    9   10   13   16   17   19   22   24   26   29   32   34 
LCS_GDT     E     466     E     466      3    3    3     3    3    3    3    3    4    5    5    5    6    8   13   15   18   22   24   25   25   28   33 
LCS_GDT     W     467     W     467      3    3    3     3    3    6    6    7    7    7   10   10   11   14   15   17   18   22   24   25   26   28   33 
LCS_AVERAGE  LCS_A:   6.42  (   3.90    5.01   10.34 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      5      7      8      9     10     13     15     18     19     21     23     24     25     27     28     31     33     34     35     35 
GDT PERCENT_CA   4.17   5.83   6.67   7.50   8.33  10.83  12.50  15.00  15.83  17.50  19.17  20.00  20.83  22.50  23.33  25.83  27.50  28.33  29.17  29.17
GDT RMS_LOCAL    0.11   0.42   0.73   1.08   1.48   2.28   2.44   2.79   2.90   3.38   3.71   3.95   3.99   4.82   4.98   5.57   5.77   6.00   6.15   6.15
GDT RMS_ALL_CA  34.96  34.83  36.20  25.60  20.89  25.42  25.69  25.35  25.06  25.58  25.08  24.74  24.91  23.94  25.11  25.33  25.20  24.89  24.69  24.69

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         31.403
LGA    P     349      P     349         31.174
LGA    E     350      E     350          8.734
LGA    I     351      I     351          7.224
LGA    V     352      V     352          6.835
LGA    D     353      D     353          3.719
LGA    F     354      F     354          1.683
LGA    Y     355      Y     355          6.579
LGA    L     356      L     356          6.983
LGA    P     357      P     357         14.180
LGA    P     358      P     358         16.910
LGA    E     359      E     359         17.248
LGA    G     360      G     360         15.595
LGA    C     361      C     361         10.399
LGA    S     362      S     362          8.066
LGA    Y     363      Y     363          2.482
LGA    R     364      R     364          3.548
LGA    L     365      L     365          1.457
LGA    A     366      A     366          3.835
LGA    V     367      V     367         22.726
LGA    V     368      V     368         22.194
LGA    T     369      T     369         22.157
LGA    I     370      I     370         21.351
LGA    K     371      K     371         20.570
LGA    K     372      K     372         17.742
LGA    Q     373      Q     373         17.585
LGA    Y     374      Y     374         27.105
LGA    A     375      A     375         28.433
LGA    G     376      G     376         30.945
LGA    H     377      H     377         29.631
LGA    A     378      A     378         26.196
LGA    K     379      K     379         25.647
LGA    R     380      R     380          3.843
LGA    V     381      V     381          1.831
LGA    M     382      M     382          2.869
LGA    M     383      M     383          1.885
LGA    G     384      G     384          2.435
LGA    V     385      V     385          3.779
LGA    W     386      W     386          3.657
LGA    S     387      S     387         22.741
LGA    F     388      F     388         28.246
LGA    L     389      L     389         30.886
LGA    R     390      R     390         31.728
LGA    Q     391      Q     391         28.059
LGA    F     392      F     392         27.934
LGA    M     393      M     393         26.419
LGA    Y     394      Y     394         22.261
LGA    T     395      T     395         24.016
LGA    K     396      K     396         23.636
LGA    F     397      F     397         21.934
LGA    V     398      V     398         26.694
LGA    I     399      I     399         29.850
LGA    V     400      V     400         34.085
LGA    C     401      C     401         33.486
LGA    D     402      D     402         38.329
LGA    D     403      D     403         36.419
LGA    D     404      D     404         36.034
LGA    V     405      V     405         31.361
LGA    N     406      N     406         31.390
LGA    A     407      A     407         31.634
LGA    R     408      R     408         29.867
LGA    D     409      D     409         23.616
LGA    W     410      W     410         19.671
LGA    N     411      N     411         20.862
LGA    D     412      D     412         41.825
LGA    V     413      V     413         36.536
LGA    I     414      I     414         33.297
LGA    W     415      W     415         37.345
LGA    A     416      A     416         36.416
LGA    I     417      I     417         32.770
LGA    T     418      T     418         36.227
LGA    T     419      T     419         39.432
LGA    R     420      R     420         38.716
LGA    M     421      M     421         36.527
LGA    D     422      D     422         35.984
LGA    P     423      P     423         36.503
LGA    A     424      A     424         34.965
LGA    R     425      R     425         31.663
LGA    D     426      D     426         30.916
LGA    T     427      T     427         24.840
LGA    V     428      V     428         20.614
LGA    L     429      L     429         16.273
LGA    V     430      V     430         12.605
LGA    E     431      E     431         12.051
LGA    N     432      N     432         13.511
LGA    T     433      T     433         19.499
LGA    P     434      P     434         22.704
LGA    I     435      I     435         26.182
LGA    D     436      D     436         27.074
LGA    Y     437      Y     437         26.678
LGA    L     438      L     438         14.185
LGA    D     439      D     439         18.245
LGA    F     440      F     440         19.921
LGA    A     441      A     441         20.377
LGA    S     442      S     442         14.958
LGA    P     443      P     443         11.953
LGA    V     444      V     444          4.772
LGA    S     445      S     445          1.943
LGA    G     446      G     446          3.264
LGA    L     447      L     447          2.420
LGA    G     448      G     448          2.794
LGA    S     449      S     449          2.525
LGA    K     450      K     450          6.438
LGA    M     451      M     451          7.760
LGA    G     452      G     452         13.302
LGA    L     453      L     453         20.888
LGA    D     454      D     454         24.052
LGA    A     455      A     455         27.194
LGA    T     456      T     456         31.381
LGA    N     457      N     457         33.419
LGA    K     458      K     458         33.290
LGA    W     459      W     459         37.317
LGA    P     460      P     460         38.067
LGA    G     461      G     461         38.732
LGA    E     462      E     462         42.235
LGA    T     463      T     463         39.333
LGA    Q     464      Q     464         39.895
LGA    R     465      R     465         26.475
LGA    E     466      E     466         32.406
LGA    W     467      W     467         32.189

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     18    2.79    13.542    11.378     0.622

LGA_LOCAL      RMSD =  2.792  Number of atoms =   18  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.087  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 19.231  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.660508 * X  +  -0.625078 * Y  +   0.415940 * Z  + -21.002966
  Y_new =  -0.575005 * X  +   0.777357 * Y  +   0.255118 * Z  +  90.073303
  Z_new =  -0.482803 * X  +  -0.070660 * Y  +  -0.872874 * Z  + 405.864929 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.060817    0.080775  [ DEG:  -175.3719      4.6281 ]
  Theta =   0.503852    2.637740  [ DEG:    28.8686    151.1314 ]
  Phi   =  -2.425289    0.716303  [ DEG:  -138.9588     41.0412 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356AL316_4-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356AL316_4-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   18   2.79  11.378    19.23
REMARK  ---------------------------------------------------------- 
MOLECULE T0356AL316_4-D3
REMARK Aligment from pdb entry: 2cse_U
ATOM    331  CA  PHE   348      59.210  63.940  82.734  1.00  0.00              
ATOM    332  CA  PRO   349      59.488  67.607  81.713  1.00  0.00              
ATOM    333  CA  GLU   350      47.207  70.395  57.869  1.00  0.00              
ATOM    334  CA  ILE   351      48.649  66.937  58.529  1.00  0.00              
ATOM    335  CA  VAL   352      51.251  67.535  55.845  1.00  0.00              
ATOM    336  CA  ASP   353      52.041  70.875  57.474  1.00  0.00              
ATOM    337  CA  PHE   354      52.184  69.368  60.966  1.00  0.00              
ATOM    338  CA  TYR   355      54.610  66.739  59.720  1.00  0.00              
ATOM    339  CA  LEU   356      57.795  68.121  63.331  1.00  0.00              
ATOM    340  CA  PRO   357      60.354  67.357  60.598  1.00  0.00              
ATOM    341  CA  PRO   358      62.857  69.810  62.034  1.00  0.00              
ATOM    342  CA  GLU   359      62.332  68.513  65.588  1.00  0.00              
ATOM    343  CA  GLY   360      64.362  66.300  67.912  1.00  0.00              
ATOM    344  CA  CYS   361      61.365  63.995  68.349  1.00  0.00              
ATOM    345  CA  SER   362      61.716  60.230  67.972  1.00  0.00              
ATOM    346  CA  TYR   363      58.053  59.283  68.453  1.00  0.00              
ATOM    347  CA  ARG   364      54.818  60.960  67.364  1.00  0.00              
ATOM    348  CA  LEU   365      51.262  60.257  68.539  1.00  0.00              
ATOM    349  CA  ALA   366      48.517  62.016  66.667  1.00  0.00              
ATOM    350  CA  VAL   367      27.240  61.105  67.353  1.00  0.00              
ATOM    351  CA  VAL   368      29.288  60.913  64.163  1.00  0.00              
ATOM    352  CA  THR   369      27.903  61.451  60.651  1.00  0.00              
ATOM    353  CA  ILE   370      30.281  61.167  57.682  1.00  0.00              
ATOM    354  CA  LYS   371      30.052  62.759  54.220  1.00  0.00              
ATOM    355  CA  LYS   372      31.696  60.365  51.725  1.00  0.00              
ATOM    356  CA  GLN   373      31.696  63.058  49.036  1.00  0.00              
ATOM    357  CA  TYR   374      29.571  65.878  65.346  1.00  0.00              
ATOM    358  CA  ALA   375      25.912  66.785  66.098  1.00  0.00              
ATOM    359  CA  GLY   376      26.573  67.016  69.837  1.00  0.00              
ATOM    360  CA  HIS   377      28.648  70.164  69.253  1.00  0.00              
ATOM    361  CA  ALA   378      27.395  71.224  65.847  1.00  0.00              
ATOM    362  CA  LYS   379      30.917  71.065  64.408  1.00  0.00              
ATOM    363  CA  ARG   380      52.437  58.404  52.247  1.00  0.00              
ATOM    364  CA  VAL   381      52.976  61.848  53.760  1.00  0.00              
ATOM    365  CA  MET   382      54.930  60.311  56.638  1.00  0.00              
ATOM    366  CA  MET   383      57.031  57.912  54.598  1.00  0.00              
ATOM    367  CA  GLY   384      58.165  60.715  52.296  1.00  0.00              
ATOM    368  CA  VAL   385      59.242  62.665  55.396  1.00  0.00              
ATOM    369  CA  TRP   386      60.723  59.777  57.409  1.00  0.00              
ATOM    370  CA  SER   387      43.977  49.271  68.629  1.00  0.00              
ATOM    371  CA  PHE   388      41.465  50.152  71.358  1.00  0.00              
ATOM    372  CA  LEU   389      38.044  48.819  70.305  1.00  0.00              
ATOM    373  CA  ARG   390      38.368  45.804  72.636  1.00  0.00              
ATOM    374  CA  GLN   391      40.902  46.917  75.225  1.00  0.00              
ATOM    375  CA  PHE   392      39.279  48.186  78.421  1.00  0.00              
ATOM    376  CA  MET   393      42.403  49.224  80.247  1.00  0.00              
ATOM    377  CA  TYR   394      41.634  52.856  79.515  1.00  0.00              
ATOM    378  CA  THR   395      38.636  52.548  81.853  1.00  0.00              
ATOM    379  CA  LYS   396      40.884  53.020  84.866  1.00  0.00              
ATOM    380  CA  PHE   397      40.948  56.703  84.006  1.00  0.00              
ATOM    381  CA  VAL   398      37.250  56.690  84.808  1.00  0.00              
ATOM    382  CA  ILE   399      36.643  54.222  87.607  1.00  0.00              
ATOM    383  CA  VAL   400      39.725  55.142  89.587  1.00  0.00              
ATOM    384  CA  CYS   401      38.547  58.731  89.174  1.00  0.00              
ATOM    385  CA  ASP   402      35.036  58.299  90.617  1.00  0.00              
ATOM    386  CA  ASP   403      33.418  58.503  87.195  1.00  0.00              
ATOM    387  CA  ASP   404      30.485  56.217  86.503  1.00  0.00              
ATOM    388  CA  VAL   405      30.456  54.213  83.261  1.00  0.00              
ATOM    389  CA  ASN   406      27.565  53.137  81.043  1.00  0.00              
ATOM    390  CA  ALA   407      27.626  50.004  78.890  1.00  0.00              
ATOM    391  CA  ARG   408      25.987  51.811  75.955  1.00  0.00              
ATOM    392  CA  ASP   409      28.145  54.949  76.088  1.00  0.00              
ATOM    393  CA  TRP   410      31.278  52.797  75.894  1.00  0.00              
ATOM    394  CA  ASN   411      30.218  50.844  72.800  1.00  0.00              
ATOM    395  CA  ASP   412      47.412  29.539  62.735  1.00  0.00              
ATOM    396  CA  VAL   413      44.019  30.892  63.773  1.00  0.00              
ATOM    397  CA  ILE   414      43.911  32.658  60.396  1.00  0.00              
ATOM    398  CA  TRP   415      42.524  30.994  57.232  1.00  0.00              
ATOM    399  CA  ALA   416      45.787  31.266  55.214  1.00  0.00              
ATOM    400  CA  ILE   417      49.405  32.313  55.860  1.00  0.00              
ATOM    401  CA  THR   418      52.658  31.975  53.869  1.00  0.00              
ATOM    402  CA  THR   419      56.204  32.702  55.056  1.00  0.00              
ATOM    403  CA  ARG   420      58.918  33.384  52.462  1.00  0.00              
ATOM    404  CA  MET   421      62.436  34.807  52.504  1.00  0.00              
ATOM    405  CA  ASP   422      64.496  36.217  49.603  1.00  0.00              
ATOM    406  CA  PRO   423      68.090  35.883  50.861  1.00  0.00              
ATOM    407  CA  ALA   424      69.357  37.969  47.916  1.00  0.00              
ATOM    408  CA  ARG   425      67.315  41.027  48.985  1.00  0.00              
ATOM    409  CA  ASP   426      66.908  40.102  52.660  1.00  0.00              
ATOM    410  CA  THR   427      63.152  40.626  52.332  1.00  0.00              
ATOM    411  CA  VAL   428      60.467  38.394  53.836  1.00  0.00              
ATOM    412  CA  LEU   429      57.099  38.080  52.146  1.00  0.00              
ATOM    413  CA  VAL   430      53.941  37.212  54.066  1.00  0.00              
ATOM    414  CA  GLU   431      50.856  36.230  52.078  1.00  0.00              
ATOM    415  CA  ASN   432      47.630  36.059  54.063  1.00  0.00              
ATOM    416  CA  THR   433      43.838  35.972  53.981  1.00  0.00              
ATOM    417  CA  PRO   434      41.791  37.097  56.990  1.00  0.00              
ATOM    418  CA  ILE   435      38.348  35.997  58.214  1.00  0.00              
ATOM    419  CA  ASP   436      37.772  38.825  60.696  1.00  0.00              
ATOM    420  CA  TYR   437      38.059  42.559  60.080  1.00  0.00              
ATOM    421  CA  LEU   438      65.401  38.151  66.685  1.00  0.00              
ATOM    422  CA  ASP   439      68.349  36.213  68.053  1.00  0.00              
ATOM    423  CA  PHE   440      68.515  32.619  69.316  1.00  0.00              
ATOM    424  CA  ALA   441      67.279  34.002  72.659  1.00  0.00              
ATOM    425  CA  SER   442      64.411  35.740  70.810  1.00  0.00              
ATOM    426  CA  PRO   443      64.106  39.476  71.558  1.00  0.00              
ATOM    427  CA  VAL   444      60.672  41.079  70.858  1.00  0.00              
ATOM    428  CA  SER   445      60.828  44.127  68.580  1.00  0.00              
ATOM    429  CA  GLY   446      57.670  45.862  67.482  1.00  0.00              
ATOM    430  CA  LEU   447      56.836  46.737  63.901  1.00  0.00              
ATOM    431  CA  GLY   448      53.691  48.656  63.028  1.00  0.00              
ATOM    432  CA  SER   449      50.180  47.365  62.495  1.00  0.00              
ATOM    433  CA  LYS   450      47.857  47.162  59.520  1.00  0.00              
ATOM    434  CA  MET   451      44.146  47.440  58.931  1.00  0.00              
ATOM    435  CA  GLY   452      41.805  44.962  57.271  1.00  0.00              
ATOM    436  CA  LEU   453      28.075  46.728  52.862  1.00  0.00              
ATOM    437  CA  ASP   454      26.038  46.835  49.646  1.00  0.00              
ATOM    438  CA  ALA   455      22.684  45.059  49.588  1.00  0.00              
ATOM    439  CA  THR   456      19.631  44.692  47.336  1.00  0.00              
ATOM    440  CA  ASN   457      16.185  43.109  47.438  1.00  0.00              
ATOM    441  CA  LYS   458      14.817  41.798  44.121  1.00  0.00              
ATOM    442  CA  TRP   459      11.069  41.171  44.142  1.00  0.00              
ATOM    443  CA  PRO   460       9.055  39.026  41.656  1.00  0.00              
ATOM    444  CA  GLY   461       6.235  40.323  39.431  1.00  0.00              
ATOM    445  CA  GLU   462       3.494  38.410  41.268  1.00  0.00              
ATOM    446  CA  THR   463       3.201  38.257  45.069  1.00  0.00              
ATOM    447  CA  GLN   464       2.204  35.256  47.175  1.00  0.00              
ATOM    448  CA  ARG   465      27.407  39.226  56.945  1.00  0.00              
ATOM    449  CA  GLU   466      24.670  37.408  58.879  1.00  0.00              
ATOM    450  CA  TRP   467      21.202  38.861  58.364  1.00  0.00              
END
