
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS168_4-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS168_4-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36       367 - 402         4.90    24.93
  LCS_AVERAGE:     21.65

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       374 - 389         1.91    25.53
  LCS_AVERAGE:      7.90

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       376 - 388         0.75    25.52
  LCS_AVERAGE:      4.96

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      3    4   13     0    3    5    6    6    8   11   14   16   19   21   24   26   32   34   37   39   41   45   48 
LCS_GDT     P     349     P     349      4    7   13     1    3    6    8    9   10   13   14   17   19   21   24   26   32   34   37   39   41   45   48 
LCS_GDT     E     350     E     350      4    7   13     3    4    6    8    9   11   13   14   17   20   22   24   27   32   34   37   39   41   45   48 
LCS_GDT     I     351     I     351      4    7   13     3    3    4    4    9   11   13   14   17   20   22   26   28   32   34   37   39   41   45   48 
LCS_GDT     V     352     V     352      4    7   13     3    4    5    5    8    9   11   14   17   18   22   26   28   32   34   37   39   44   49   52 
LCS_GDT     D     353     D     353      4    7   13     3    4    5    6    8    9    9   12   17   20   23   26   28   32   38   40   45   51   53   54 
LCS_GDT     F     354     F     354      4    7   21     3    4    5    5    8    9   10   14   16   21   23   26   32   37   40   43   45   51   55   56 
LCS_GDT     Y     355     Y     355      4    7   26     3    4    5    6    8    9   11   16   17   20   24   26   32   37   40   43   45   51   55   56 
LCS_GDT     L     356     L     356      4    8   26     3    3    5    6    7    8   10   16   17   20   24   26   31   37   40   43   45   51   55   56 
LCS_GDT     P     357     P     357      4    8   26     0    3    5    6    7    8   10   14   17   20   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     P     358     P     358      4    8   26     3    4    5    7   10   12   13   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     E     359     E     359      4    8   26     3    3    5    6    7   10   14   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     G     360     G     360      4    8   26     3    3    5    6    7    8   11   16   17   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     C     361     C     361      4    8   26     3    3    4    4    7    8    9   12   13   18   19   26   32   37   40   43   45   48   53   56 
LCS_GDT     S     362     S     362      5   10   26     3    3    8    9   10   11   12   16   18   20   24   26   32   37   40   43   45   51   55   56 
LCS_GDT     Y     363     Y     363      6   10   26     4    5    8    9   10   12   13   16   18   20   24   26   32   37   40   43   45   51   55   56 
LCS_GDT     R     364     R     364      6   10   26     4    5    8    9   10   11   13   15   18   20   23   26   30   33   35   39   43   45   48   51 
LCS_GDT     L     365     L     365      6   10   27     4    5    8    9   10   12   13   15   17   21   23   26   28   32   35   39   45   48   52   55 
LCS_GDT     A     366     A     366      6   10   35     4    5    8    9   10   12   14   17   19   21   24   26   32   37   40   43   45   51   55   56 
LCS_GDT     V     367     V     367      6   10   36     3    4    8    9   10   12   14   17   19   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     V     368     V     368      6   10   36     3    4    8    9   10   12   14   16   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     T     369     T     369      5   10   36     3    4    7    9   10   12   14   17   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     I     370     I     370      4   10   36     3    4    8    9   10   12   14   17   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     K     371     K     371      4   10   36     3    5    7    9   10   12   13   16   19   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     K     372     K     372      5    9   36     3    4    6    8   11   14   17   18   19   22   25   29   32   37   40   43   45   51   55   56 
LCS_GDT     Q     373     Q     373      5    9   36     3    5    6    9   11   14   17   18   19   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     Y     374     Y     374      5   16   36     4    5    6    9   12   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     A     375     A     375      5   16   36     4    5    5    7   12   15   17   18   19   22   25   30   33   36   38   43   45   51   55   56 
LCS_GDT     G     376     G     376     13   16   36     5   12   12   13   13   15   17   18   19   22   25   30   33   36   38   43   45   51   55   56 
LCS_GDT     H     377     H     377     13   16   36    11   12   12   13   13   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     A     378     A     378     13   16   36    11   12   12   13   13   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     K     379     K     379     13   16   36    11   12   12   13   13   15   17   18   19   22   25   29   32   37   40   43   45   51   55   56 
LCS_GDT     R     380     R     380     13   16   36    11   12   12   13   13   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     V     381     V     381     13   16   36    11   12   12   13   13   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     M     382     M     382     13   16   36    11   12   12   13   13   15   17   18   19   22   25   29   33   37   40   43   45   51   55   56 
LCS_GDT     M     383     M     383     13   16   36    11   12   12   13   13   15   17   18   19   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     G     384     G     384     13   16   36    11   12   12   13   13   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     V     385     V     385     13   16   36    11   12   12   13   13   15   17   18   19   21   25   30   33   36   38   41   45   51   55   56 
LCS_GDT     W     386     W     386     13   16   36    11   12   12   13   13   15   17   18   19   22   25   26   33   35   38   41   45   51   55   56 
LCS_GDT     S     387     S     387     13   16   36    11   12   12   13   13   15   17   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     F     388     F     388     13   16   36     5    6   12   13   13   15   17   18   21   22   25   30   33   36   38   41   45   51   55   56 
LCS_GDT     L     389     L     389      4   16   36     3    5   11   13   13   15   17   18   19   20   25   29   32   36   37   39   40   42   45   51 
LCS_GDT     R     390     R     390      4    7   36     3    4    6    7    9    9   12   16   19   20   25   29   32   36   37   39   45   51   53   55 
LCS_GDT     Q     391     Q     391      3    7   36     3    3    6    7    7   11   13   15   17   20   25   28   31   36   37   39   44   51   53   54 
LCS_GDT     F     392     F     392      3    7   36     3    4    6    7    7    9   13   16   19   22   25   30   33   36   38   40   45   51   53   54 
LCS_GDT     M     393     M     393      3    7   36     3    3    4    5    6    6   16   18   21   22   25   30   33   36   38   41   45   51   55   56 
LCS_GDT     Y     394     Y     394      4    8   36     3    3    6    8   11   15   16   18   21   22   25   30   33   36   38   41   45   51   55   56 
LCS_GDT     T     395     T     395      4    8   36     3    3    6    8   11   15   16   18   21   22   25   30   33   36   38   41   45   51   55   56 
LCS_GDT     K     396     K     396      5    8   36     3    5    6    8   11   15   16   18   21   22   25   30   33   36   40   43   45   51   55   56 
LCS_GDT     F     397     F     397      5    8   36     3    3    6    8   11   15   16   18   21   22   25   30   33   36   40   43   45   51   55   56 
LCS_GDT     V     398     V     398      5    8   36     2    3    5    7   11   15   16   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     I     399     I     399      5    8   36     3    3    5    8   11   15   16   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     V     400     V     400      5    8   36     3    3    5    8   11   15   16   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     C     401     C     401      4    8   36     3    4    6    7   11   15   16   18   21   22   25   30   33   37   40   43   45   51   55   56 
LCS_GDT     D     402     D     402      4    5   36     3    4    4    7   10   15   16   18   21   22   25   30   33   36   38   41   45   51   55   56 
LCS_GDT     D     403     D     403      4    6   32     3    4    4    8    9   10   16   18   19   20   22   27   30   34   38   40   42   46   49   54 
LCS_GDT     D     404     D     404      4    6   32     3    4    4    8   11   15   16   18   21   22   25   30   33   36   38   41   45   51   53   56 
LCS_GDT     V     405     V     405      3    6   32     4    4    6    8    9   12   15   18   21   22   25   29   33   35   38   41   45   51   55   56 
LCS_GDT     N     406     N     406      3   14   24     3    3    7   10   12   12   13   16   17   19   22   26   29   36   40   43   45   51   55   56 
LCS_GDT     A     407     A     407      3   14   24     3    8   11   13   13   13   14   16   17   22   24   28   30   33   35   37   43   48   49   51 
LCS_GDT     R     408     R     408     11   14   24     3    4   11   13   13   13   14   16   19   22   24   28   30   32   35   37   39   43   48   51 
LCS_GDT     D     409     D     409     11   14   24     3   10   11   13   13   13   14   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     W     410     W     410     11   14   24     8   10   11   13   13   13   14   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     N     411     N     411     11   14   24     8   10   11   13   13   13   14   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     D     412     D     412     11   14   24     8   10   11   13   13   13   14   16   17   20   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     V     413     V     413     11   14   24     8   10   11   13   13   13   14   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     I     414     I     414     11   14   24     8   10   11   13   13   13   14   16   19   22   24   28   32   37   40   43   45   51   55   56 
LCS_GDT     W     415     W     415     11   14   24     8   10   11   13   13   13   14   16   19   22   24   28   31   34   37   41   45   51   55   56 
LCS_GDT     A     416     A     416     11   14   24     8   10   11   13   13   13   14   16   18   22   25   29   31   34   37   41   45   51   55   56 
LCS_GDT     I     417     I     417     11   14   24     8   10   11   13   13   13   14   17   19   21   24   28   30   33   35   39   45   51   55   56 
LCS_GDT     T     418     T     418     11   14   24     8   10   11   13   13   13   14   17   19   22   24   28   30   33   35   37   40   44   49   52 
LCS_GDT     T     419     T     419     11   14   24     8   10   11   13   13   13   14   15   17   20   22   24   27   29   34   37   40   44   49   52 
LCS_GDT     R     420     R     420      4   14   24     3    3    5    9   13   13   14   16   19   22   24   28   30   33   35   39   45   51   55   56 
LCS_GDT     M     421     M     421      4    5   24     3    3    4    5    8   10   14   17   19   22   24   28   30   33   35   39   45   51   55   56 
LCS_GDT     D     422     D     422      3    5   24     3    3    4    5    7    9   13   17   19   21   23   26   30   33   35   37   40   44   49   54 
LCS_GDT     P     423     P     423      3    5   24     3    3    4    5    6    6    7    9   13   17   20   25   27   32   34   37   39   41   44   48 
LCS_GDT     A     424     A     424      3    5   24     3    3    4    4    7    8    9   12   16   19   22   25   27   32   33   37   39   41   45   47 
LCS_GDT     R     425     R     425      3    8   24     1    3    4    5    9   12   14   17   19   21   23   28   30   33   35   37   40   42   45   47 
LCS_GDT     D     426     D     426      5    8   24     4    5    6    6    8   12   13   16   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     T     427     T     427      5    8   24     4    5    6    6    9   12   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     V     428     V     428      5    8   24     4    5    6    6    9   12   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     L     429     L     429      5    8   24     4    5    6    6    9   12   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     V     430     V     430      5    8   24     3    5    6    6    9   12   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     E     431     E     431      3    8   24     3    3    4    6    9   12   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     N     432     N     432      3    8   24     0    3    4    6    9   12   14   17   19   21   23   28   30   32   34   36   39   42   45   47 
LCS_GDT     T     433     T     433      3    8   24     0    3    7    9   10   12   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     P     434     P     434      4    7   24     2    3    4    6    7   10   14   17   19   22   24   28   30   33   35   37   40   42   45   47 
LCS_GDT     I     435     I     435      4    7   24     3    3    4    6    9   11   14   17   19   21   23   28   30   33   35   37   40   42   45   48 
LCS_GDT     D     436     D     436      4    7   24     3    3    4    6    7    8   13   17   19   21   23   26   28   33   35   37   40   42   45   49 
LCS_GDT     Y     437     Y     437      4    7   24     3    4    4    6    7    8    8    8    9   10   14   17   22   28   30   34   39   41   45   49 
LCS_GDT     L     438     L     438      4    7   24     3    4    4    6    7    8    8    8   10   11   13   17   24   28   30   34   37   40   44   46 
LCS_GDT     D     439     D     439      4    6   24     3    4    4    6    7   10   14   17   19   21   23   26   28   32   33   36   40   42   45   49 
LCS_GDT     F     440     F     440      4    7   24     3    4    4    5    8   12   14   17   19   21   23   26   28   32   35   37   40   42   45   49 
LCS_GDT     A     441     A     441      4    7   22     3    4    5    6    8   10   13   15   17   19   21   24   25   30   34   37   40   42   45   49 
LCS_GDT     S     442     S     442      5    7   18     4    4    6    8    9   10   13   15   17   19   21   24   25   28   32   37   40   42   45   49 
LCS_GDT     P     443     P     443      5    7   18     4    4    6    8    9   10   13   15   17   19   21   24   25   28   30   33   37   40   45   49 
LCS_GDT     V     444     V     444      5    7   18     3    4    6    8    9   10   13   15   17   19   21   24   25   28   33   36   39   42   45   49 
LCS_GDT     S     445     S     445      5    7   18     4    4    6    8    9   10   13   15   17   19   21   24   25   28   32   34   39   42   45   49 
LCS_GDT     G     446     G     446      5    7   18     3    4    6    6    7   10   12   14   16   18   21   24   25   28   30   33   37   40   45   49 
LCS_GDT     L     447     L     447      5    7   18     3    4    6    6    9   10   13   15   17   19   21   24   25   28   30   33   37   40   45   49 
LCS_GDT     G     448     G     448      5    7   18     3    4    6    6    7   10   13   15   17   19   21   24   25   29   33   36   39   42   45   49 
LCS_GDT     S     449     S     449      5    7   18     3    4    6    6    7    9   13   15   17   19   21   24   25   28   30   33   37   40   45   49 
LCS_GDT     K     450     K     450      5    7   18     3    4    6    6    8    9   12   14   17   19   21   24   25   28   30   33   37   40   45   49 
LCS_GDT     M     451     M     451      5    8   18     3    4    5    6    8    9   13   15   19   20   22   24   25   28   30   33   37   40   45   49 
LCS_GDT     G     452     G     452      5    8   18     3    4    5    6    8   10   13   15   17   19   21   24   25   28   30   33   37   40   45   49 
LCS_GDT     L     453     L     453      5    8   18     3    4    5    6    8    9   12   13   17   19   21   24   25   28   30   33   37   38   41   44 
LCS_GDT     D     454     D     454      5    8   18     3    4    5    6    8    9   12   13   15   17   20   22   25   27   29   33   37   38   41   42 
LCS_GDT     A     455     A     455      5    8   18     3    4    5    6    8    9   12   12   13   15   18   19   23   24   29   30   32   34   37   39 
LCS_GDT     T     456     T     456      4    8   17     3    4    5    6    8    9   12   12   13   14   15   16   18   21   22   24   26   31   32   34 
LCS_GDT     N     457     N     457      4    8   17     3    4    5    6    8    9   12   12   13   14   15   16   16   19   20   21   22   23   26   30 
LCS_GDT     K     458     K     458      4    8   17     0    3    4    6    8    9   12   12   13   14   15   16   16   19   20   21   21   23   26   30 
LCS_GDT     W     459     W     459      4    7   17     3    3    4    6    8    9   12   12   13   14   15   16   16   19   20   21   21   23   26   30 
LCS_GDT     P     460     P     460      4    7   17     3    3    4    6    8    9   12   12   13   14   15   16   16   19   20   21   21   23   26   30 
LCS_GDT     G     461     G     461      5    7   17     3    4    6    6    6    9   12   12   13   14   15   16   16   19   20   21   21   23   26   30 
LCS_GDT     E     462     E     462      5    7   17     4    5    6    6    6    7    7    8   11   14   15   16   16   19   20   21   21   23   26   27 
LCS_GDT     T     463     T     463      5    7   17     4    5    6    6    6    7    7    7    7   12   15   16   16   19   20   21   21   23   26   27 
LCS_GDT     Q     464     Q     464      5    7   17     4    5    6    6    6    7    7    7   11   14   15   16   16   19   20   21   21   23   26   30 
LCS_GDT     R     465     R     465      5    7   17     4    5    6    6    6    7    7    7    7    7   11   13   16   19   20   21   21   23   26   30 
LCS_GDT     E     466     E     466      5    7   10     3    5    5    5    6    7    7    7    7    7    8    8    9   11   13   16   20   23   26   27 
LCS_GDT     W     467     W     467      3    7   10     3    5    6    6    6    7    7    7    7    7    8    8    9   11   13   13   16   22   26   27 
LCS_AVERAGE  LCS_A:  11.50  (   4.96    7.90   21.65 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     12     13     13     15     17     18     21     22     25     30     33     37     40     43     45     51     55     56 
GDT PERCENT_CA   9.17  10.00  10.00  10.83  10.83  12.50  14.17  15.00  17.50  18.33  20.83  25.00  27.50  30.83  33.33  35.83  37.50  42.50  45.83  46.67
GDT RMS_LOCAL    0.33   0.47   0.47   0.75   0.75   1.82   2.34   2.46   3.04   3.16   3.58   4.17   7.05   5.10   5.36   5.60   5.79   6.45   6.81   6.85
GDT RMS_ALL_CA  25.93  25.81  25.81  25.52  25.52  25.15  23.63  24.06  25.63  25.51  25.45  25.18  25.27  24.94  24.86  24.78  24.76  24.89  24.81  24.81

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         12.911
LGA    P     349      P     349         17.606
LGA    E     350      E     350         19.809
LGA    I     351      I     351         22.307
LGA    V     352      V     352         27.871
LGA    D     353      D     353         30.136
LGA    F     354      F     354         27.976
LGA    Y     355      Y     355         31.499
LGA    L     356      L     356         33.282
LGA    P     357      P     357         37.153
LGA    P     358      P     358         41.946
LGA    E     359      E     359         42.217
LGA    G     360      G     360         35.918
LGA    C     361      C     361         35.240
LGA    S     362      S     362         34.751
LGA    Y     363      Y     363         29.779
LGA    R     364      R     364         25.566
LGA    L     365      L     365         22.175
LGA    A     366      A     366         20.677
LGA    V     367      V     367         19.195
LGA    V     368      V     368         16.468
LGA    T     369      T     369         14.880
LGA    I     370      I     370         11.369
LGA    K     371      K     371          9.291
LGA    K     372      K     372          3.740
LGA    Q     373      Q     373          3.570
LGA    Y     374      Y     374          2.204
LGA    A     375      A     375          2.235
LGA    G     376      G     376          1.805
LGA    H     377      H     377          3.005
LGA    A     378      A     378          3.115
LGA    K     379      K     379          1.349
LGA    R     380      R     380          1.339
LGA    V     381      V     381          2.217
LGA    M     382      M     382          2.170
LGA    M     383      M     383          1.518
LGA    G     384      G     384          1.024
LGA    V     385      V     385          1.787
LGA    W     386      W     386          2.637
LGA    S     387      S     387          2.173
LGA    F     388      F     388          2.700
LGA    L     389      L     389          3.368
LGA    R     390      R     390          6.834
LGA    Q     391      Q     391         10.963
LGA    F     392      F     392          8.795
LGA    M     393      M     393          7.043
LGA    Y     394      Y     394         10.806
LGA    T     395      T     395         15.442
LGA    K     396      K     396         18.147
LGA    F     397      F     397         19.775
LGA    V     398      V     398         20.086
LGA    I     399      I     399         21.992
LGA    V     400      V     400         18.813
LGA    C     401      C     401         18.042
LGA    D     402      D     402         20.103
LGA    D     403      D     403         27.139
LGA    D     404      D     404         28.353
LGA    V     405      V     405         31.734
LGA    N     406      N     406         36.134
LGA    A     407      A     407         34.931
LGA    R     408      R     408         41.033
LGA    D     409      D     409         39.915
LGA    W     410      W     410         35.917
LGA    N     411      N     411         34.549
LGA    D     412      D     412         30.047
LGA    V     413      V     413         26.760
LGA    I     414      I     414         25.899
LGA    W     415      W     415         23.007
LGA    A     416      A     416         18.139
LGA    I     417      I     417         16.395
LGA    T     418      T     418         17.237
LGA    T     419      T     419         12.677
LGA    R     420      R     420         10.458
LGA    M     421      M     421         12.786
LGA    D     422      D     422         15.368
LGA    P     423      P     423         20.308
LGA    A     424      A     424         18.096
LGA    R     425      R     425         11.497
LGA    D     426      D     426         10.296
LGA    T     427      T     427         11.198
LGA    V     428      V     428         14.654
LGA    L     429      L     429         14.468
LGA    V     430      V     430         19.253
LGA    E     431      E     431         23.347
LGA    N     432      N     432         27.509
LGA    T     433      T     433         28.549
LGA    P     434      P     434         32.436
LGA    I     435      I     435         28.301
LGA    D     436      D     436         26.923
LGA    Y     437      Y     437         27.020
LGA    L     438      L     438         24.019
LGA    D     439      D     439         21.142
LGA    F     440      F     440         19.261
LGA    A     441      A     441         14.355
LGA    S     442      S     442         14.887
LGA    P     443      P     443         15.234
LGA    V     444      V     444         20.344
LGA    S     445      S     445         20.946
LGA    G     446      G     446         19.384
LGA    L     447      L     447         17.415
LGA    G     448      G     448         13.317
LGA    S     449      S     449          8.976
LGA    K     450      K     450          7.481
LGA    M     451      M     451          5.172
LGA    G     452      G     452         11.465
LGA    L     453      L     453         16.449
LGA    D     454      D     454         22.157
LGA    A     455      A     455         27.796
LGA    T     456      T     456         33.787
LGA    N     457      N     457         37.683
LGA    K     458      K     458         39.343
LGA    W     459      W     459         43.439
LGA    P     460      P     460         44.598
LGA    G     461      G     461         42.298
LGA    E     462      E     462         40.029
LGA    T     463      T     463         40.414
LGA    Q     464      Q     464         40.522
LGA    R     465      R     465         40.885
LGA    E     466      E     466         43.321
LGA    W     467      W     467         39.148

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     18    2.46    17.917    14.777     0.704

LGA_LOCAL      RMSD =  2.457  Number of atoms =   18  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.057  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 17.484  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.999106 * X  +   0.042257 * Y  +   0.001350 * Z  +  40.694977
  Y_new =   0.012980 * X  +   0.276176 * Y  +   0.961019 * Z  +  47.647320
  Z_new =   0.040236 * X  +   0.960178 * Y  +  -0.276478 * Z  +  57.673252 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.851157   -1.290436  [ DEG:   106.0635    -73.9365 ]
  Theta =  -0.040247   -3.101345  [ DEG:    -2.3060   -177.6940 ]
  Phi   =   3.128602   -0.012990  [ DEG:   179.2557     -0.7443 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS168_4-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS168_4-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   18   2.46  14.777    17.48
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS168_4-D3
PFRMAT TS
TARGET T0356
MODEL 4
PARENT N/A
ATOM    348  CA  PHE   348      55.271  58.195  46.052  1.00 25.00           C
ATOM    349  CA  PRO   349      53.296  56.026  48.433  1.00 25.00           C
ATOM    350  CA  GLU   350      54.704  52.439  48.494  1.00 25.00           C
ATOM    351  CA  ILE   351      54.163  49.541  50.903  1.00 25.00           C
ATOM    352  CA  VAL   352      51.289  47.092  50.824  1.00 25.00           C
ATOM    353  CA  ASP   353      48.591  45.330  48.796  1.00 25.00           C
ATOM    354  CA  PHE   354      45.095  46.652  48.542  1.00 25.00           C
ATOM    355  CA  TYR   355      42.438  43.943  48.992  1.00 25.00           C
ATOM    356  CA  LEU   356      41.574  40.339  49.677  1.00 25.00           C
ATOM    357  CA  PRO   357      41.157  40.028  45.924  1.00 25.00           C
ATOM    358  CA  PRO   358      42.348  39.483  42.304  1.00 25.00           C
ATOM    359  CA  GLU   359      42.628  41.637  39.148  1.00 25.00           C
ATOM    360  CA  GLY   360      44.740  44.318  40.849  1.00 25.00           C
ATOM    361  CA  CYS   361      45.222  43.356  44.529  1.00 25.00           C
ATOM    362  CA  SER   362      47.584  41.161  46.541  1.00 25.00           C
ATOM    363  CA  TYR   363      46.119  40.530  50.048  1.00 25.00           C
ATOM    364  CA  ARG   364      45.039  39.498  53.574  1.00 25.00           C
ATOM    365  CA  LEU   365      46.521  42.895  54.084  1.00 25.00           C
ATOM    366  CA  ALA   366      46.997  46.564  53.104  1.00 25.00           C
ATOM    367  CA  VAL   367      45.927  50.049  52.147  1.00 25.00           C
ATOM    368  CA  VAL   368      45.784  53.755  51.289  1.00 25.00           C
ATOM    369  CA  THR   369      44.054  57.045  51.903  1.00 25.00           C
ATOM    370  CA  ILE   370      44.041  60.825  52.193  1.00 25.00           C
ATOM    371  CA  LYS   371      46.205  63.742  53.167  1.00 25.00           C
ATOM    372  CA  LYS   372      45.942  67.318  51.985  1.00 25.00           C
ATOM    373  CA  GLN   373      47.186  69.374  49.042  1.00 25.00           C
ATOM    374  CA  TYR   374      46.981  66.950  46.124  1.00 25.00           C
ATOM    375  CA  ALA   375      45.296  63.557  46.777  1.00 25.00           C
ATOM    376  CA  GLY   376      47.900  60.891  45.894  1.00 25.00           C
ATOM    377  CA  HIS   377      50.690  63.504  46.126  1.00 25.00           C
ATOM    378  CA  ALA   378      49.386  64.630  49.546  1.00 25.00           C
ATOM    379  CA  LYS   379      49.317  60.992  50.743  1.00 25.00           C
ATOM    380  CA  ARG   380      52.914  60.498  49.524  1.00 25.00           C
ATOM    381  CA  VAL   381      54.002  63.673  51.368  1.00 25.00           C
ATOM    382  CA  MET   382      52.296  62.431  54.564  1.00 25.00           C
ATOM    383  CA  MET   383      54.069  59.053  54.228  1.00 25.00           C
ATOM    384  CA  GLY   384      57.428  60.835  53.765  1.00 25.00           C
ATOM    385  CA  VAL   385      56.756  62.961  56.880  1.00 25.00           C
ATOM    386  CA  TRP   386      55.900  59.808  58.877  1.00 25.00           C
ATOM    387  CA  SER   387      59.137  58.143  57.687  1.00 25.00           C
ATOM    388  CA  PHE   388      61.138  61.241  58.720  1.00 25.00           C
ATOM    389  CA  LEU   389      64.019  62.424  56.556  1.00 25.00           C
ATOM    390  CA  ARG   390      64.655  58.860  55.424  1.00 25.00           C
ATOM    391  CA  GLN   391      66.819  55.860  56.352  1.00 25.00           C
ATOM    392  CA  PHE   392      65.587  54.724  59.795  1.00 25.00           C
ATOM    393  CA  MET   393      65.317  51.522  61.892  1.00 25.00           C
ATOM    394  CA  TYR   394      65.184  49.589  58.674  1.00 25.00           C
ATOM    395  CA  THR   395      63.971  49.271  55.125  1.00 25.00           C
ATOM    396  CA  LYS   396      63.711  48.571  51.413  1.00 25.00           C
ATOM    397  CA  PHE   397      60.397  48.744  49.532  1.00 25.00           C
ATOM    398  CA  VAL   398      58.033  49.332  46.628  1.00 25.00           C
ATOM    399  CA  ILE   399      55.298  50.387  44.242  1.00 25.00           C
ATOM    400  CA  VAL   400      52.370  52.802  43.810  1.00 25.00           C
ATOM    401  CA  CYS   401      49.736  54.459  46.009  1.00 25.00           C
ATOM    402  CA  ASP   402      46.629  52.608  47.123  1.00 25.00           C
ATOM    403  CA  ASP   403      45.894  49.815  44.650  1.00 25.00           C
ATOM    404  CA  ASP   404      42.070  49.614  45.179  1.00 25.00           C
ATOM    405  CA  VAL   405      41.197  47.274  42.274  1.00 25.00           C
ATOM    406  CA  ASN   406      38.194  47.254  39.960  1.00 25.00           C
ATOM    407  CA  ALA   407      35.083  49.332  39.171  1.00 25.00           C
ATOM    408  CA  ARG   408      36.106  48.765  35.592  1.00 25.00           C
ATOM    409  CA  ASP   409      39.755  49.689  35.456  1.00 25.00           C
ATOM    410  CA  TRP   410      42.214  52.261  36.841  1.00 25.00           C
ATOM    411  CA  ASN   411      41.049  55.908  36.903  1.00 25.00           C
ATOM    412  CA  ASP   412      38.265  55.002  39.372  1.00 25.00           C
ATOM    413  CA  VAL   413      40.797  53.192  41.602  1.00 25.00           C
ATOM    414  CA  ILE   414      43.102  56.249  41.508  1.00 25.00           C
ATOM    415  CA  TRP   415      40.169  58.520  42.460  1.00 25.00           C
ATOM    416  CA  ALA   416      39.283  56.196  45.372  1.00 25.00           C
ATOM    417  CA  ILE   417      42.924  56.255  46.558  1.00 25.00           C
ATOM    418  CA  THR   418      42.946  60.081  46.384  1.00 25.00           C
ATOM    419  CA  THR   419      39.697  60.216  48.407  1.00 25.00           C
ATOM    420  CA  ARG   420      37.419  61.656  45.709  1.00 25.00           C
ATOM    421  CA  MET   421      40.082  63.709  43.926  1.00 25.00           C
ATOM    422  CA  ASP   422      37.108  64.977  41.884  1.00 25.00           C
ATOM    423  CA  PRO   423      34.479  63.756  39.528  1.00 25.00           C
ATOM    424  CA  ALA   424      31.932  63.227  42.349  1.00 25.00           C
ATOM    425  CA  ARG   425      32.686  61.581  45.656  1.00 25.00           C
ATOM    426  CA  ASP   426      32.224  59.613  48.859  1.00 25.00           C
ATOM    427  CA  THR   427      33.877  56.392  49.793  1.00 25.00           C
ATOM    428  CA  VAL   428      32.297  53.394  51.578  1.00 25.00           C
ATOM    429  CA  LEU   429      33.647  50.758  54.025  1.00 25.00           C
ATOM    430  CA  VAL   430      32.379  47.223  53.925  1.00 25.00           C
ATOM    431  CA  GLU   431      29.445  46.817  56.394  1.00 25.00           C
ATOM    432  CA  ASN   432      28.971  43.253  55.163  1.00 25.00           C
ATOM    433  CA  THR   433      30.627  39.900  55.973  1.00 25.00           C
ATOM    434  CA  PRO   434      29.120  40.482  59.452  1.00 25.00           C
ATOM    435  CA  ILE   435      32.507  41.951  60.283  1.00 25.00           C
ATOM    436  CA  ASP   436      36.212  42.888  60.686  1.00 25.00           C
ATOM    437  CA  TYR   437      36.481  46.520  61.699  1.00 25.00           C
ATOM    438  CA  LEU   438      38.185  49.012  63.978  1.00 25.00           C
ATOM    439  CA  ASP   439      36.165  47.715  66.909  1.00 25.00           C
ATOM    440  CA  PHE   440      36.700  44.120  67.991  1.00 25.00           C
ATOM    441  CA  ALA   441      38.595  41.474  69.921  1.00 25.00           C
ATOM    442  CA  SER   442      38.997  43.450  73.126  1.00 25.00           C
ATOM    443  CA  PRO   443      39.801  40.581  75.546  1.00 25.00           C
ATOM    444  CA  VAL   444      39.062  43.217  78.223  1.00 25.00           C
ATOM    445  CA  SER   445      40.504  46.773  78.031  1.00 25.00           C
ATOM    446  CA  GLY   446      43.873  45.853  76.542  1.00 25.00           C
ATOM    447  CA  LEU   447      43.094  46.435  72.913  1.00 25.00           C
ATOM    448  CA  GLY   448      42.495  46.731  69.191  1.00 25.00           C
ATOM    449  CA  SER   449      44.737  48.434  66.654  1.00 25.00           C
ATOM    450  CA  LYS   450      44.779  51.289  64.125  1.00 25.00           C
ATOM    451  CA  MET   451      47.536  49.107  62.773  1.00 25.00           C
ATOM    452  CA  GLY   452      49.079  45.778  61.701  1.00 25.00           C
ATOM    453  CA  LEU   453      48.145  42.376  60.193  1.00 25.00           C
ATOM    454  CA  ASP   454      48.908  39.697  57.665  1.00 25.00           C
ATOM    455  CA  ALA   455      47.140  36.360  57.126  1.00 25.00           C
ATOM    456  CA  THR   456      48.374  33.057  58.540  1.00 25.00           C
ATOM    457  CA  ASN   457      45.913  31.214  60.781  1.00 25.00           C
ATOM    458  CA  LYS   458      44.481  27.920  62.025  1.00 25.00           C
ATOM    459  CA  TRP   459      41.601  25.571  61.516  1.00 25.00           C
ATOM    460  CA  PRO   460      38.073  24.124  61.242  1.00 25.00           C
ATOM    461  CA  GLY   461      35.093  24.946  63.424  1.00 25.00           C
ATOM    462  CA  GLU   462      34.578  26.864  66.705  1.00 25.00           C
ATOM    463  CA  THR   463      30.789  26.439  66.400  1.00 25.00           C
ATOM    464  CA  GLN   464      27.836  26.474  64.048  1.00 25.00           C
ATOM    465  CA  ARG   465      25.594  28.218  66.592  1.00 25.00           C
ATOM    466  CA  GLU   466      25.400  30.626  69.548  1.00 25.00           C
ATOM    467  CA  TRP   467      25.624  34.033  67.888  1.00 25.00           C
TER
END
