
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS168_5-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS168_5-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    37       392 - 428         4.99    17.64
  LCS_AVERAGE:     22.88

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       405 - 420         1.87    18.55
  LCS_AVERAGE:      8.26

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       376 - 388         0.75    21.87
  LCS_AVERAGE:      5.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      3    3   18     3    3    5    6    8   11   12   15   19   23   24   29   30   32   35   37   41   45   48   53 
LCS_GDT     P     349     P     349      3    8   18     3    3    3    6    7    8   12   14   14   20   22   26   30   32   35   37   41   45   48   53 
LCS_GDT     E     350     E     350      4    8   18     3    4    5    6    8   11   12   13   13   14   15   16   17   19   22   23   25   34   40   45 
LCS_GDT     I     351     I     351      4    8   18     3    4    4    4    7   10   12   13   13   14   15   16   18   21   24   28   32   39   41   43 
LCS_GDT     V     352     V     352      5    8   18     3    4    5    6    7   11   12   13   13   14   16   26   32   33   34   36   41   43   48   53 
LCS_GDT     D     353     D     353      5    8   18     3    4    5    6    8   11   12   13   15   17   18   22   33   37   41   43   44   48   50   53 
LCS_GDT     F     354     F     354      5    8   18     3    4    5    6    8   11   12   19   21   26   29   32   36   43   46   50   54   57   60   62 
LCS_GDT     Y     355     Y     355      5    8   18     3    4    9   13   16   19   23   24   26   31   34   38   41   44   46   50   54   57   60   62 
LCS_GDT     L     356     L     356      5    8   18     3    4    5    6   12   17   21   24   25   27   30   34   38   44   46   50   54   57   60   62 
LCS_GDT     P     357     P     357      3    7   18     3    3    4    6   12   17   23   24   26   31   34   38   42   44   46   50   54   57   60   62 
LCS_GDT     P     358     P     358      3    4   18     3    3    3    3    5   11   18   21   23   25   29   31   38   43   45   48   52   57   60   62 
LCS_GDT     E     359     E     359      3    4   18     3    3    3    5    8   11   12   13   13   14   18   21   30   33   39   47   50   53   58   62 
LCS_GDT     G     360     G     360      3    4   18     1    3    4    6    8   11   12   13   13   14   16   18   26   31   32   41   44   48   50   55 
LCS_GDT     C     361     C     361      3    5   19     0    3    3    3    5    8   10   12   13   14   16   18   24   31   32   36   39   43   50   53 
LCS_GDT     S     362     S     362      4    6   19     3    4    4    5    6    8   10   12   13   21   22   24   26   31   32   36   39   44   50   53 
LCS_GDT     Y     363     Y     363      4    6   19     3    4    5    7   11   15   16   18   22   22   23   24   26   31   32   34   39   42   44   48 
LCS_GDT     R     364     R     364      5    9   19     3    4    5    7   11   15   16   18   22   22   23   24   26   31   32   34   37   40   43   45 
LCS_GDT     L     365     L     365      5    9   19     3    4    7    7    8   10   12   18   22   22   23   24   25   31   32   34   37   40   43   45 
LCS_GDT     A     366     A     366      5    9   19     3    4    7    7    8   10   12   18   21   24   25   28   29   32   35   36   41   48   54   57 
LCS_GDT     V     367     V     367      5    9   19     3    4    7    7    8   10   12   16   20   24   25   28   30   32   43   47   52   57   60   62 
LCS_GDT     V     368     V     368      5    9   22     3    4    6    7    8   10   12   16   22   28   33   37   42   44   46   50   54   57   60   62 
LCS_GDT     T     369     T     369      4    9   25     3    4    7    7    8   11   13   16   18   22   33   37   42   44   46   50   54   57   60   62 
LCS_GDT     I     370     I     370      4    9   25     3    4    7    7   11   13   16   17   17   18   23   26   30   34   39   45   48   51   53   56 
LCS_GDT     K     371     K     371      4    9   25     3    4    7    7    8   10   12   14   20   21   24   29   30   32   32   34   35   39   42   45 
LCS_GDT     K     372     K     372      4    9   25     3    4    7    7   14   16   19   21   22   23   24   29   30   32   32   34   37   42   44   46 
LCS_GDT     Q     373     Q     373      5    9   32     3    4    5    7    9   16   20   21   22   23   23   26   28   31   32   34   37   42   43   46 
LCS_GDT     Y     374     Y     374      5   15   33     4    4    5    6   10   16   20   21   22   23   23   26   29   34   39   42   48   51   53   54 
LCS_GDT     A     375     A     375      5   15   33     4    4    5    7   14   16   20   21   25   29   35   37   41   44   46   49   51   52   55   59 
LCS_GDT     G     376     G     376     13   15   33     5   12   12   13   14   16   20   21   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     H     377     H     377     13   15   33    11   12   12   13   14   16   20   21   23   29   35   38   42   44   46   50   54   55   58   61 
LCS_GDT     A     378     A     378     13   15   33    11   12   12   13   14   16   20   21   27   30   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     K     379     K     379     13   15   33    11   12   12   13   14   16   20   21   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     R     380     R     380     13   15   33    11   12   12   13   14   16   20   21   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     V     381     V     381     13   15   33    11   12   12   13   14   16   20   21   27   30   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     M     382     M     382     13   15   33    11   12   12   13   14   16   20   21   27   30   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     M     383     M     383     13   15   33    11   12   12   13   14   16   20   21   27   30   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     G     384     G     384     13   15   33    11   12   12   13   14   16   20   21   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     V     385     V     385     13   15   33    11   12   12   13   14   16   20   21   23   28   35   37   42   44   46   50   54   57   60   62 
LCS_GDT     W     386     W     386     13   15   33    11   12   12   13   14   16   20   21   22   28   31   36   38   44   46   50   54   57   60   62 
LCS_GDT     S     387     S     387     13   15   33    11   12   12   13   14   16   20   21   22   28   35   37   42   44   46   50   54   57   60   62 
LCS_GDT     F     388     F     388     13   15   33     5    6   12   13   14   16   20   21   27   30   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     L     389     L     389      3   15   33     3    3    6   13   14   16   20   21   23   28   31   37   42   44   46   50   54   57   60   62 
LCS_GDT     R     390     R     390      3   15   33     3    3    4    6    8   10   16   19   22   28   31   36   37   42   46   50   54   56   58   61 
LCS_GDT     Q     391     Q     391      3    9   33     3    3    7   10   13   15   16   19   23   28   31   36   38   44   46   50   54   57   60   62 
LCS_GDT     F     392     F     392      3   10   37     3    3    6    9   12   15   18   21   27   30   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     M     393     M     393      4   10   37     4    4    5    7   12   15   20   23   26   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     Y     394     Y     394      4   10   37     4    4    6    8   12   18   21   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     T     395     T     395      4   10   37     4    4    5    7   12   15   21   24   26   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     K     396     K     396      4   10   37     4    4    9   11   14   19   23   24   26   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     F     397     F     397      4   10   37     3    3    5    7   13   18   23   24   26   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     V     398     V     398      4   10   37     3    4    9   13   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     I     399     I     399      4   10   37     0    3    5   13   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     V     400     V     400      4   10   37     3    4    9   13   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     C     401     C     401      4   10   37     3    4    6   13   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     D     402     D     402      5   10   37     3    4    7   11   14   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     D     403     D     403      5    8   37     3    5    7   10   12   16   20   23   26   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     D     404     D     404      5    7   37     3    5    9   13   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     V     405     V     405      5   16   37     3    5    6    8   13   17   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     N     406     N     406      5   16   37     3    5    6    8    8   14   18   20   23   27   29   34   38   43   46   50   54   57   60   62 
LCS_GDT     A     407     A     407     10   16   37     3    8   13   14   14   15   18   19   22   27   29   31   34   37   40   48   52   56   60   62 
LCS_GDT     R     408     R     408     10   16   37     3    5   12   14   14   15   18   19   22   27   29   29   32   36   39   43   48   54   60   62 
LCS_GDT     D     409     D     409     12   16   37     3    5   13   14   14   19   23   24   26   31   34   38   42   44   46   50   54   57   60   62 
LCS_GDT     W     410     W     410     12   16   37     3   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     N     411     N     411     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     D     412     D     412     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     V     413     V     413     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     I     414     I     414     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     W     415     W     415     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     A     416     A     416     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     I     417     I     417     12   16   37     8   10   13   14   16   19   23   24   27   31   35   38   42   44   46   50   54   57   60   62 
LCS_GDT     T     418     T     418     12   16   37     8   10   13   14   16   19   23   24   26   31   33   38   42   44   46   50   54   57   60   62 
LCS_GDT     T     419     T     419     12   16   37     4   10   13   14   16   19   23   24   26   31   33   38   42   44   46   50   54   57   60   62 
LCS_GDT     R     420     R     420     12   16   37     2    9   13   14   15   19   23   24   27   31   34   38   42   44   46   50   54   57   60   62 
LCS_GDT     M     421     M     421      4    5   37     3    5    6    8    8   15   16   20   23   28   31   36   40   44   46   50   54   57   60   62 
LCS_GDT     D     422     D     422      4    5   37     3    4    5    7   10   15   16   20   23   28   31   36   40   44   46   50   54   57   60   62 
LCS_GDT     P     423     P     423      4    5   37     3    4    5    7    9   12   16   20   23   28   31   36   40   44   46   50   54   57   60   62 
LCS_GDT     A     424     A     424      4    5   37     3    4    5    7   10   15   16   20   22   25   28   32   35   42   45   48   52   57   60   62 
LCS_GDT     R     425     R     425      3    7   37     3    3    5   10   11   16   19   20   23   28   31   36   40   44   46   50   54   57   60   62 
LCS_GDT     D     426     D     426      3    7   37     3    3    4    4    8   16   19   19   23   28   31   36   40   44   46   50   54   57   60   62 
LCS_GDT     T     427     T     427      4    7   37     3    5    7   10   10   14   17   20   22   27   29   32   36   42   45   48   52   57   60   62 
LCS_GDT     V     428     V     428      4    8   37     3    5    7   10   11   14   17   20   21   25   29   32   36   39   43   47   50   54   60   62 
LCS_GDT     L     429     L     429      4    8   34     3    4    6   10   10   14   17   19   21   24   26   30   33   37   41   43   47   52   54   58 
LCS_GDT     V     430     V     430      4    8   33     3    5    7   10   12   16   20   21   22   24   25   29   33   37   41   43   46   50   54   58 
LCS_GDT     E     431     E     431      4    8   32     3    4    5    8   13   16   20   21   22   24   25   29   30   32   35   36   38   41   44   48 
LCS_GDT     N     432     N     432      4    8   31     3    4    6   11   14   16   20   21   22   24   25   29   30   32   33   36   38   41   43   45 
LCS_GDT     T     433     T     433      4    9   30     3    3    5    8    9    9   11   13   15   19   23   29   30   32   33   35   37   39   43   45 
LCS_GDT     P     434     P     434      4    9   28     3    3    5    8    9    9   11   13   13   18   23   29   30   32   33   35   37   39   43   45 
LCS_GDT     I     435     I     435      4    9   28     3    3    4    8    9   11   12   14   20   20   23   29   30   32   33   35   37   39   43   45 
LCS_GDT     D     436     D     436      4    9   28     3    3    4    8    9    9    9   11   20   20   22   26   30   32   33   35   37   39   43   45 
LCS_GDT     Y     437     Y     437      3    9   28     3    3    4    8    9    9   11   13   16   19   23   27   30   32   33   35   37   39   43   45 
LCS_GDT     L     438     L     438      3    9   28     3    3    4    8    9    9   11   12   15   19   23   27   30   32   33   35   37   38   42   43 
LCS_GDT     D     439     D     439      3    9   28     0    3    5    8    9    9   11   13   15   17   21   25   28   32   33   35   37   38   42   43 
LCS_GDT     F     440     F     440      3    9   22     1    3    4    8    9    9   10   11   13   17   21   21   23   27   31   33   35   38   42   45 
LCS_GDT     A     441     A     441      3    9   17     3    3    4    8    9    9   10   11   15   17   21   21   23   25   28   33   34   38   42   45 
LCS_GDT     S     442     S     442      4    6   16     3    3    4    5    6    7    7    9   15   17   21   21   23   26   29   33   35   38   42   45 
LCS_GDT     P     443     P     443      4    6   16     3    3    4    5    6    7    7    8   11   13   15   20   22   26   29   33   35   38   42   43 
LCS_GDT     V     444     V     444      4    6   16     3    3    4    5    5    7    7    9   15   17   21   21   22   26   29   31   35   38   42   45 
LCS_GDT     S     445     S     445      4    6   16     3    3    4    5    6    9   10   14   15   18   21   23   25   26   29   33   34   36   42   45 
LCS_GDT     G     446     G     446      4    6   17     3    3    4    6    6    7   12   14   15   18   22   23   25   28   30   34   35   37   43   45 
LCS_GDT     L     447     L     447      4    6   18     4    4    6    7    8    9   12   14   17   18   22   23   25   28   30   34   37   40   43   45 
LCS_GDT     G     448     G     448      4    6   18     4    4    6    7    8    9   12   14   17   18   22   23   25   28   31   34   37   40   43   45 
LCS_GDT     S     449     S     449      4    7   18     4    4    6    7    8    9   12   14   17   18   22   23   25   27   31   34   37   40   43   45 
LCS_GDT     K     450     K     450      5    8   18     4    4    6    7    8    9   12   14   17   18   22   23   25   27   31   34   37   40   43   45 
LCS_GDT     M     451     M     451      5    8   18     3    4    5    6    8    9   11   12   12   17   19   20   23   26   31   34   37   40   43   45 
LCS_GDT     G     452     G     452      5    8   18     3    4    5    6    7    9   11   12   12   14   19   20   22   26   31   34   37   40   43   45 
LCS_GDT     L     453     L     453      5    9   18     3    4    5    6    8    9   11   12   12   17   19   20   22   25   28   34   37   40   43   45 
LCS_GDT     D     454     D     454      5    9   18     3    4    5    7    8    9   11   12   12   17   19   20   24   25   28   33   42   47   50   55 
LCS_GDT     A     455     A     455      6    9   18     3    4    6    7    8    9   11   12   12   17   19   19   21   25   27   29   31   32   40   45 
LCS_GDT     T     456     T     456      6    9   18     3    4    6    7    8    9   11   12   12   17   19   21   24   25   27   29   31   31   35   52 
LCS_GDT     N     457     N     457      6    9   18     3    5    6    7    8    9   11   12   12   17   19   21   24   25   27   29   32   41   51   60 
LCS_GDT     K     458     K     458      6    9   18     3    5    6    7    8    9   11   12   12   17   19   21   24   25   27   29   32   37   54   62 
LCS_GDT     W     459     W     459      6    9   18     3    5    6    7    8    9   11   12   12   17   19   21   24   25   27   38   51   55   59   62 
LCS_GDT     P     460     P     460      6    9   18     3    5    6    7    8    9    9   12   12   17   19   21   24   32   41   47   51   57   60   62 
LCS_GDT     G     461     G     461      5    9   18     1    5    5    7    7    9    9    9   12   13   15   21   24   25   31   34   45   54   58   62 
LCS_GDT     E     462     E     462      4    6   18     0    3    4    4    5    6    6    6    7    8   10   15   18   20   21   27   27   28   43   52 
LCS_GDT     T     463     T     463      4    6   18     3    3    4    4    5    6    6    6    7    8   11   15   18   24   25   27   27   30   32   35 
LCS_GDT     Q     464     Q     464      4    6   18     3    3    4    4    5    6    7    9   12   13   15   19   21   25   31   34   48   54   59   62 
LCS_GDT     R     465     R     465      4    6   18     3    3    4    4    5    6    6    6    8   13   15   19   21   24   25   27   27   28   30   37 
LCS_GDT     E     466     E     466      3    6   12     3    3    4    4    5    6    6    6    7   13   14   16   21   24   25   27   27   28   32   37 
LCS_GDT     W     467     W     467      3    5    9     3    3    3    4    4    4    5    6    7    7    7    7   15   18   23   24   25   28   31   37 
LCS_AVERAGE  LCS_A:  12.05  (   5.01    8.26   22.88 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     13     14     16     19     23     24     27     31     35     38     42     44     46     50     54     57     60     62 
GDT PERCENT_CA   9.17  10.00  10.83  11.67  13.33  15.83  19.17  20.00  22.50  25.83  29.17  31.67  35.00  36.67  38.33  41.67  45.00  47.50  50.00  51.67
GDT RMS_LOCAL    0.33   0.47   0.97   1.09   1.68   1.99   2.34   2.46   3.37   3.63   4.00   4.15   4.46   4.60   4.77   5.27   5.60   6.08   6.34   6.55
GDT RMS_ALL_CA  21.73  21.68  18.12  18.55  20.25  19.56  19.36  19.34  19.32  18.91  19.42  19.20  19.25  19.25  19.35  19.02  18.89  18.53  18.39  18.35

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         18.760
LGA    P     349      P     349         19.026
LGA    E     350      E     350         20.492
LGA    I     351      I     351         18.245
LGA    V     352      V     352         18.177
LGA    D     353      D     353         14.981
LGA    F     354      F     354          8.044
LGA    Y     355      Y     355          3.334
LGA    L     356      L     356          3.907
LGA    P     357      P     357          3.072
LGA    P     358      P     358          5.905
LGA    E     359      E     359         10.690
LGA    G     360      G     360         13.599
LGA    C     361      C     361         17.904
LGA    S     362      S     362         18.375
LGA    Y     363      Y     363         19.420
LGA    R     364      R     364         21.392
LGA    L     365      L     365         19.697
LGA    A     366      A     366         14.199
LGA    V     367      V     367         12.299
LGA    V     368      V     368         10.606
LGA    T     369      T     369         10.798
LGA    I     370      I     370         13.698
LGA    K     371      K     371         19.305
LGA    K     372      K     372         18.687
LGA    Q     373      Q     373         22.939
LGA    Y     374      Y     374         18.282
LGA    A     375      A     375         13.559
LGA    G     376      G     376         10.054
LGA    H     377      H     377         10.618
LGA    A     378      A     378         10.355
LGA    K     379      K     379         10.461
LGA    R     380      R     380         10.290
LGA    V     381      V     381         11.127
LGA    M     382      M     382         12.091
LGA    M     383      M     383         12.476
LGA    G     384      G     384         11.591
LGA    V     385      V     385         14.597
LGA    W     386      W     386         16.667
LGA    S     387      S     387         15.561
LGA    F     388      F     388         15.420
LGA    L     389      L     389         18.210
LGA    R     390      R     390         20.581
LGA    Q     391      Q     391         18.879
LGA    F     392      F     392         12.968
LGA    M     393      M     393          8.452
LGA    Y     394      Y     394          7.608
LGA    T     395      T     395          5.754
LGA    K     396      K     396          1.918
LGA    F     397      F     397          3.130
LGA    V     398      V     398          3.515
LGA    I     399      I     399          3.214
LGA    V     400      V     400          2.579
LGA    C     401      C     401          2.529
LGA    D     402      D     402          2.865
LGA    D     403      D     403          4.718
LGA    D     404      D     404          3.535
LGA    V     405      V     405          3.209
LGA    N     406      N     406          5.511
LGA    A     407      A     407          6.584
LGA    R     408      R     408          6.448
LGA    D     409      D     409          2.368
LGA    W     410      W     410          2.196
LGA    N     411      N     411          1.131
LGA    D     412      D     412          1.157
LGA    V     413      V     413          1.562
LGA    I     414      I     414          1.429
LGA    W     415      W     415          0.955
LGA    A     416      A     416          0.854
LGA    I     417      I     417          1.538
LGA    T     418      T     418          1.487
LGA    T     419      T     419          1.135
LGA    R     420      R     420          3.057
LGA    M     421      M     421          9.878
LGA    D     422      D     422         11.465
LGA    P     423      P     423         12.049
LGA    A     424      A     424         15.685
LGA    R     425      R     425         10.600
LGA    D     426      D     426          8.644
LGA    T     427      T     427         12.166
LGA    V     428      V     428         13.631
LGA    L     429      L     429         16.161
LGA    V     430      V     430         19.170
LGA    E     431      E     431         25.742
LGA    N     432      N     432         30.622
LGA    T     433      T     433         33.044
LGA    P     434      P     434         35.571
LGA    I     435      I     435         34.788
LGA    D     436      D     436         37.816
LGA    Y     437      Y     437         36.318
LGA    L     438      L     438         38.040
LGA    D     439      D     439         37.382
LGA    F     440      F     440         40.674
LGA    A     441      A     441         42.748
LGA    S     442      S     442         42.971
LGA    P     443      P     443         46.554
LGA    V     444      V     444         47.812
LGA    S     445      S     445         45.837
LGA    G     446      G     446         39.763
LGA    L     447      L     447         35.195
LGA    G     448      G     448         32.264
LGA    S     449      S     449         26.550
LGA    K     450      K     450         20.730
LGA    M     451      M     451         21.131
LGA    G     452      G     452         16.282
LGA    L     453      L     453         17.343
LGA    D     454      D     454         14.485
LGA    A     455      A     455         17.182
LGA    T     456      T     456         15.689
LGA    N     457      N     457         15.182
LGA    K     458      K     458         14.948
LGA    W     459      W     459         13.579
LGA    P     460      P     460         12.781
LGA    G     461      G     461         15.450
LGA    E     462      E     462         18.861
LGA    T     463      T     463         18.426
LGA    Q     464      Q     464         12.630
LGA    R     465      R     465         18.244
LGA    E     466      E     466         19.510
LGA    W     467      W     467         25.128

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     24    2.46    20.833    17.795     0.936

LGA_LOCAL      RMSD =  2.463  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.375  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 14.871  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.255626 * X  +   0.965931 * Y  +  -0.040415 * Z  +  48.588520
  Y_new =  -0.402607 * X  +  -0.144367 * Y  +  -0.903917 * Z  +  62.308678
  Z_new =  -0.878955 * X  +  -0.214794 * Y  +   0.425795 * Z  +  45.158146 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.467204    2.674388  [ DEG:   -26.7688    153.2312 ]
  Theta =   1.073667    2.067925  [ DEG:    61.5166    118.4834 ]
  Phi   =  -2.136502    1.005090  [ DEG:  -122.4126     57.5874 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS168_5-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS168_5-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   24   2.46  17.795    14.87
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS168_5-D3
PFRMAT TS
TARGET T0356
MODEL 5
PARENT N/A
ATOM    348  CA  PHE   348      54.264  52.274  58.551  1.00 25.00           C
ATOM    349  CA  PRO   349      56.362  55.427  58.168  1.00 25.00           C
ATOM    350  CA  GLU   350      59.864  54.152  58.790  1.00 25.00           C
ATOM    351  CA  ILE   351      60.613  56.171  61.930  1.00 25.00           C
ATOM    352  CA  VAL   352      57.264  57.783  62.401  1.00 25.00           C
ATOM    353  CA  ASP   353      55.190  59.031  65.357  1.00 25.00           C
ATOM    354  CA  PHE   354      53.392  62.343  65.345  1.00 25.00           C
ATOM    355  CA  TYR   355      53.516  65.825  66.834  1.00 25.00           C
ATOM    356  CA  LEU   356      50.672  68.336  66.184  1.00 25.00           C
ATOM    357  CA  PRO   357      48.621  66.746  69.003  1.00 25.00           C
ATOM    358  CA  PRO   358      49.948  69.340  71.463  1.00 25.00           C
ATOM    359  CA  GLU   359      47.271  71.833  70.312  1.00 25.00           C
ATOM    360  CA  GLY   360      47.531  72.232  66.542  1.00 25.00           C
ATOM    361  CA  CYS   361      49.066  73.012  63.095  1.00 25.00           C
ATOM    362  CA  SER   362      49.692  74.533  59.637  1.00 25.00           C
ATOM    363  CA  TYR   363      52.417  75.373  57.215  1.00 25.00           C
ATOM    364  CA  ARG   364      51.345  73.272  54.200  1.00 25.00           C
ATOM    365  CA  LEU   365      47.996  73.024  52.490  1.00 25.00           C
ATOM    366  CA  ALA   366      46.464  69.590  53.090  1.00 25.00           C
ATOM    367  CA  VAL   367      43.552  67.354  52.248  1.00 25.00           C
ATOM    368  CA  VAL   368      44.036  63.612  51.875  1.00 25.00           C
ATOM    369  CA  THR   369      44.240  60.665  54.204  1.00 25.00           C
ATOM    370  CA  ILE   370      43.503  58.566  57.254  1.00 25.00           C
ATOM    371  CA  LYS   371      42.155  55.051  56.742  1.00 25.00           C
ATOM    372  CA  LYS   372      40.259  55.826  59.942  1.00 25.00           C
ATOM    373  CA  GLN   373      36.517  55.426  59.160  1.00 25.00           C
ATOM    374  CA  TYR   374      36.481  58.052  56.424  1.00 25.00           C
ATOM    375  CA  ALA   375      35.031  58.920  53.029  1.00 25.00           C
ATOM    376  CA  GLY   376      37.297  61.208  50.956  1.00 25.00           C
ATOM    377  CA  HIS   377      40.094  60.824  53.543  1.00 25.00           C
ATOM    378  CA  ALA   378      39.694  57.016  53.448  1.00 25.00           C
ATOM    379  CA  LYS   379      39.873  57.069  49.623  1.00 25.00           C
ATOM    380  CA  ARG   380      43.049  59.205  49.776  1.00 25.00           C
ATOM    381  CA  VAL   381      44.604  56.757  52.278  1.00 25.00           C
ATOM    382  CA  MET   382      43.725  53.818  49.985  1.00 25.00           C
ATOM    383  CA  MET   383      45.312  55.633  47.010  1.00 25.00           C
ATOM    384  CA  GLY   384      48.476  56.289  49.066  1.00 25.00           C
ATOM    385  CA  VAL   385      48.627  52.592  50.056  1.00 25.00           C
ATOM    386  CA  TRP   386      48.248  51.566  46.386  1.00 25.00           C
ATOM    387  CA  SER   387      51.065  53.966  45.399  1.00 25.00           C
ATOM    388  CA  PHE   388      53.304  52.504  48.143  1.00 25.00           C
ATOM    389  CA  LEU   389      52.691  50.717  51.455  1.00 25.00           C
ATOM    390  CA  ARG   390      52.320  46.957  52.078  1.00 25.00           C
ATOM    391  CA  GLN   391      55.396  47.651  54.262  1.00 25.00           C
ATOM    392  CA  PHE   392      56.822  51.112  54.580  1.00 25.00           C
ATOM    393  CA  MET   393      59.219  49.927  57.229  1.00 25.00           C
ATOM    394  CA  TYR   394      57.500  49.270  60.538  1.00 25.00           C
ATOM    395  CA  THR   395      57.286  52.219  62.948  1.00 25.00           C
ATOM    396  CA  LYS   396      53.983  54.063  63.195  1.00 25.00           C
ATOM    397  CA  PHE   397      52.100  57.019  61.781  1.00 25.00           C
ATOM    398  CA  VAL   398      48.385  57.025  62.670  1.00 25.00           C
ATOM    399  CA  ILE   399      47.671  59.310  59.705  1.00 25.00           C
ATOM    400  CA  VAL   400      45.804  62.069  57.911  1.00 25.00           C
ATOM    401  CA  CYS   401      43.822  65.135  56.849  1.00 25.00           C
ATOM    402  CA  ASP   402      43.919  68.900  57.721  1.00 25.00           C
ATOM    403  CA  ASP   403      45.786  71.238  60.115  1.00 25.00           C
ATOM    404  CA  ASP   404      45.100  74.208  57.858  1.00 25.00           C
ATOM    405  CA  VAL   405      42.821  75.984  60.361  1.00 25.00           C
ATOM    406  CA  ASN   406      42.256  78.536  63.072  1.00 25.00           C
ATOM    407  CA  ALA   407      42.506  75.545  65.349  1.00 25.00           C
ATOM    408  CA  ARG   408      42.759  76.158  69.110  1.00 25.00           C
ATOM    409  CA  ASP   409      42.102  72.629  70.396  1.00 25.00           C
ATOM    410  CA  TRP   410      42.922  69.625  68.207  1.00 25.00           C
ATOM    411  CA  ASN   411      39.192  68.858  68.608  1.00 25.00           C
ATOM    412  CA  ASP   412      38.440  70.681  65.324  1.00 25.00           C
ATOM    413  CA  VAL   413      41.186  68.680  63.556  1.00 25.00           C
ATOM    414  CA  ILE   414      39.737  65.419  64.946  1.00 25.00           C
ATOM    415  CA  TRP   415      36.248  66.418  63.723  1.00 25.00           C
ATOM    416  CA  ALA   416      37.662  67.198  60.251  1.00 25.00           C
ATOM    417  CA  ILE   417      39.414  63.793  60.171  1.00 25.00           C
ATOM    418  CA  THR   418      36.146  62.061  61.164  1.00 25.00           C
ATOM    419  CA  THR   419      34.282  63.933  58.391  1.00 25.00           C
ATOM    420  CA  ARG   420      34.593  67.081  56.243  1.00 25.00           C
ATOM    421  CA  MET   421      31.862  69.134  54.732  1.00 25.00           C
ATOM    422  CA  ASP   422      29.912  66.718  52.474  1.00 25.00           C
ATOM    423  CA  PRO   423      31.102  63.204  51.800  1.00 25.00           C
ATOM    424  CA  ALA   424      30.765  63.906  48.092  1.00 25.00           C
ATOM    425  CA  ARG   425      33.204  61.456  46.667  1.00 25.00           C
ATOM    426  CA  ASP   426      36.275  59.164  46.685  1.00 25.00           C
ATOM    427  CA  THR   427      39.603  60.994  46.118  1.00 25.00           C
ATOM    428  CA  VAL   428      42.680  60.444  44.032  1.00 25.00           C
ATOM    429  CA  LEU   429      44.451  57.270  42.742  1.00 25.00           C
ATOM    430  CA  VAL   430      45.536  55.803  39.407  1.00 25.00           C
ATOM    431  CA  GLU   431      45.853  56.111  35.607  1.00 25.00           C
ATOM    432  CA  ASN   432      47.461  55.501  32.179  1.00 25.00           C
ATOM    433  CA  THR   433      48.484  58.240  29.777  1.00 25.00           C
ATOM    434  CA  PRO   434      51.603  56.201  28.839  1.00 25.00           C
ATOM    435  CA  ILE   435      52.991  55.959  32.348  1.00 25.00           C
ATOM    436  CA  ASP   436      54.237  52.388  32.302  1.00 25.00           C
ATOM    437  CA  TYR   437      54.099  52.431  36.088  1.00 25.00           C
ATOM    438  CA  LEU   438      57.135  54.548  36.912  1.00 25.00           C
ATOM    439  CA  ASP   439      60.312  56.524  36.348  1.00 25.00           C
ATOM    440  CA  PHE   440      60.810  60.262  36.712  1.00 25.00           C
ATOM    441  CA  ALA   441      61.515  62.981  34.095  1.00 25.00           C
ATOM    442  CA  SER   442      62.673  61.743  30.662  1.00 25.00           C
ATOM    443  CA  PRO   443      65.039  64.233  28.944  1.00 25.00           C
ATOM    444  CA  VAL   444      64.894  68.005  29.348  1.00 25.00           C
ATOM    445  CA  SER   445      65.303  69.689  32.681  1.00 25.00           C
ATOM    446  CA  GLY   446      65.497  70.460  36.378  1.00 25.00           C
ATOM    447  CA  LEU   447      63.855  67.575  38.206  1.00 25.00           C
ATOM    448  CA  GLY   448      62.757  68.210  41.804  1.00 25.00           C
ATOM    449  CA  SER   449      62.110  66.082  44.843  1.00 25.00           C
ATOM    450  CA  LYS   450      59.122  64.751  46.823  1.00 25.00           C
ATOM    451  CA  MET   451      56.087  66.931  45.953  1.00 25.00           C
ATOM    452  CA  GLY   452      53.363  64.480  45.105  1.00 25.00           C
ATOM    453  CA  LEU   453      50.192  64.467  42.984  1.00 25.00           C
ATOM    454  CA  ASP   454      46.525  65.013  42.154  1.00 25.00           C
ATOM    455  CA  ALA   455      45.141  68.208  40.622  1.00 25.00           C
ATOM    456  CA  THR   456      43.397  71.250  39.156  1.00 25.00           C
ATOM    457  CA  ASN   457      40.360  70.898  36.982  1.00 25.00           C
ATOM    458  CA  LYS   458      38.794  68.482  34.468  1.00 25.00           C
ATOM    459  CA  TRP   459      36.329  71.005  33.099  1.00 25.00           C
ATOM    460  CA  PRO   460      33.375  69.491  31.176  1.00 25.00           C
ATOM    461  CA  GLY   461      32.278  66.631  28.886  1.00 25.00           C
ATOM    462  CA  GLU   462      30.356  63.387  29.063  1.00 25.00           C
ATOM    463  CA  THR   463      30.237  59.788  27.805  1.00 25.00           C
ATOM    464  CA  GLN   464      29.195  58.399  31.205  1.00 25.00           C
ATOM    465  CA  ARG   465      28.994  55.365  28.929  1.00 25.00           C
ATOM    466  CA  GLU   466      29.628  53.044  31.870  1.00 25.00           C
ATOM    467  CA  TRP   467      26.661  50.992  30.728  1.00 25.00           C
TER
END
