
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS393_1-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS393_1-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28       400 - 427         4.94    27.05
  LCS_AVERAGE:     19.47

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       375 - 390         1.98    22.37
  LCS_AVERAGE:      7.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       376 - 388         0.75    22.70
  LCS_AVERAGE:      4.55

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      3    9   14     3    5    6    7    8    8   11   14   18   19   24   27   28   30   33   41   48   55   63   68 
LCS_GDT     P     349     P     349      3    9   14     3    4    6    7    8    8    9    9   11   14   19   24   27   29   32   32   38   43   50   53 
LCS_GDT     E     350     E     350      3    9   14     3    4    5    7    8    8    9   10   14   15   19   21   31   38   47   54   61   63   66   68 
LCS_GDT     I     351     I     351      3    9   14     3    3    3    6    7   10   10   13   17   20   24   34   39   45   50   55   61   63   66   68 
LCS_GDT     V     352     V     352      5    9   14     3    4    5    6    8   10   10   13   17   18   24   34   39   42   49   55   61   63   66   68 
LCS_GDT     D     353     D     353      5    9   14     4    5    6    7    8   10   10   14   17   21   25   34   39   44   49   55   61   63   66   68 
LCS_GDT     F     354     F     354      5    9   14     4    5    6    7    8    9   11   17   22   27   34   39   42   46   50   55   61   63   66   68 
LCS_GDT     Y     355     Y     355      5    9   14     4    5    6    7    8    8   11   17   21   26   34   39   42   46   50   55   61   63   66   68 
LCS_GDT     L     356     L     356      5    9   24     4    5    6    7    8    8   10   11   17   24   31   37   42   46   50   54   61   63   66   68 
LCS_GDT     P     357     P     357      4    6   26     3    4    4    9   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     P     358     P     358      4    6   26     3    4    4    5    6   10   12   21   25   28   32   41   42   46   50   53   57   60   63   68 
LCS_GDT     E     359     E     359      3    6   26     3    3    4    5    6   10   14   17   21   25   31   36   39   43   47   49   55   57   61   63 
LCS_GDT     G     360     G     360      3    6   26     3    3    4    5    6    6    7    9   12   14   19   22   26   32   42   46   48   51   54   59 
LCS_GDT     C     361     C     361      3    6   26     3    3    4    5    6    7    8    8    9   15   19   21   26   31   42   46   48   50   54   58 
LCS_GDT     S     362     S     362      4   10   26     0    4    4    5    6   10   13   19   22   27   32   36   39   45   47   52   57   60   62   65 
LCS_GDT     Y     363     Y     363      4   10   26     1    4    6    8   10   11   14   19   22   27   32   36   39   43   47   52   57   59   62   65 
LCS_GDT     R     364     R     364      4   10   26     3    5    6    8   10   11   14   19   22   27   32   36   39   43   47   52   57   59   62   65 
LCS_GDT     L     365     L     365      5   10   26     4    5    7    9   15   17   17   19   22   25   32   36   39   43   47   52   57   59   62   65 
LCS_GDT     A     366     A     366      5   10   26     4    5    7    9   10   12   15   19   22   27   35   41   42   46   50   53   57   60   66   68 
LCS_GDT     V     367     V     367      5   10   27     4    4    7    9   10   12   14   19   22   27   32   41   42   46   50   53   57   63   66   68 
LCS_GDT     V     368     V     368      5   10   27     4    4    8    9   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     T     369     T     369      5   10   27     3    5    8    9   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     I     370     I     370      5   10   27     2    5    7    9   10   12   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     K     371     K     371      5   10   27     3    5    7    9   10   12   14   19   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     K     372     K     372      4   10   27     3    4    7    9   10   12   14   19   23   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     Q     373     Q     373      4   10   27     3    4    7    9    9   11   13   14   20   27   32   36   42   46   50   54   61   63   66   68 
LCS_GDT     Y     374     Y     374      3    4   27     3    3    3    6    6   10   13   18   23   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     A     375     A     375      3   16   27     3    3    3    6   14   17   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     G     376     G     376     13   16   27     5   12   12   14   15   17   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     H     377     H     377     13   16   27    11   12   12   14   15   17   17   20   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     A     378     A     378     13   16   27    11   12   12   14   15   17   17   19   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     K     379     K     379     13   16   27    11   12   12   14   15   17   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     R     380     R     380     13   16   27    11   12   12   14   15   17   17   19   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     V     381     V     381     13   16   27    11   12   12   14   15   17   17   19   22   28   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     M     382     M     382     13   16   27    11   12   12   14   15   17   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     M     383     M     383     13   16   27    11   12   12   14   15   17   17   20   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     G     384     G     384     13   16   27    11   12   12   14   15   17   17   19   20   28   32   36   42   46   50   55   61   63   66   68 
LCS_GDT     V     385     V     385     13   16   27    11   12   12   14   15   17   17   19   23   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     W     386     W     386     13   16   27    11   12   12   14   15   17   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     S     387     S     387     13   16   27    11   12   12   14   15   17   17   19   20   28   32   34   40   46   50   55   61   63   66   68 
LCS_GDT     F     388     F     388     13   16   27     5    6   12   14   15   17   17   19   20   28   32   34   40   45   50   55   61   63   66   68 
LCS_GDT     L     389     L     389      5   16   27     3    4    8   13   15   17   17   19   20   25   32   34   35   43   49   54   61   63   66   68 
LCS_GDT     R     390     R     390      5   16   27     3    4    6    9   12   13   17   19   20   25   32   34   35   38   44   54   59   62   65   68 
LCS_GDT     Q     391     Q     391      4    7   27     4    4    4    6    8    9   10   14   18   19   23   31   34   37   39   47   51   54   60   67 
LCS_GDT     F     392     F     392      4    7   27     4    4    4    6    9   12   14   17   20   28   32   34   38   44   49   55   61   63   66   68 
LCS_GDT     M     393     M     393      4    5   27     4    4    4    7    9   10   16   19   20   21   24   29   35   40   50   54   61   63   66   68 
LCS_GDT     Y     394     Y     394      4    5   27     4    4    8   14   14   17   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     T     395     T     395      4    8   24     4    4    6    8    8    8   13   18   23   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     K     396     K     396      4    8   24     4    4    7    8    9   10   11   12   14   18   28   33   42   46   49   53   57   62   66   68 
LCS_GDT     F     397     F     397      4    8   24     4    4    7    8    9   10   11   12   14   14   18   23   34   40   44   52   57   59   62   65 
LCS_GDT     V     398     V     398      4    8   23     4    4    7    8    9   10   11   12   14   16   18   23   32   40   45   52   57   62   65   68 
LCS_GDT     I     399     I     399      4    8   23     3    4    7    8    9   10   11   12   14   17   20   23   32   40   47   52   59   63   66   68 
LCS_GDT     V     400     V     400      4    8   28     3    4    7    8    9   11   12   15   15   21   25   34   39   42   49   55   61   63   66   68 
LCS_GDT     C     401     C     401      4    8   28     3    4    7    8   10   12   13   15   17   21   25   34   39   42   49   55   61   63   66   68 
LCS_GDT     D     402     D     402      4    8   28     3    3    7    8    9   12   13   15   17   21   25   34   39   42   49   55   61   63   66   68 
LCS_GDT     D     403     D     403      4    8   28     3    3    4    4    9   12   14   15   17   21   25   34   39   42   47   52   58   62   65   68 
LCS_GDT     D     404     D     404      4    5   28     3    3    4    5    9   10   14   15   17   21   25   30   36   42   47   49   52   58   58   64 
LCS_GDT     V     405     V     405      4    5   28     3    4    5    6    8   12   14   15   17   21   25   34   39   42   47   51   54   58   61   66 
LCS_GDT     N     406     N     406      4    5   28     3    4    5    7    9   10   13   15   17   22   26   32   39   44   49   55   61   63   66   68 
LCS_GDT     A     407     A     407      4    5   28     3    5    5    8    9   10   13   15   17   19   27   34   38   45   49   55   61   63   66   68 
LCS_GDT     R     408     R     408      4    5   28     3    5    5    8    9   10   13   15   17   22   28   34   35   39   45   54   61   63   66   68 
LCS_GDT     D     409     D     409      4   11   28     3    5    5    8   10   12   13   19   22   28   32   41   42   46   50   55   61   63   66   68 
LCS_GDT     W     410     W     410     10   11   28     9   10   10   10   10   10   17   21   25   28   32   41   42   46   50   53   58   63   66   68 
LCS_GDT     N     411     N     411     10   11   28     9   10   10   10   10   12   13   21   25   28   32   41   42   46   50   55   61   63   66   68 
LCS_GDT     D     412     D     412     10   11   28     9   10   10   10   10   12   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     V     413     V     413     10   11   28     9   10   10   10   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     I     414     I     414     10   11   28     9   10   10   10   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     W     415     W     415     10   11   28     9   10   10   10   10   12   14   17   21   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     A     416     A     416     10   11   28     9   10   10   10   10   12   14   17   22   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     I     417     I     417     10   11   28     9   10   10   10   10   12   14   19   22   27   35   39   42   46   50   55   61   63   66   68 
LCS_GDT     T     418     T     418     10   11   28     9   10   10   10   10   12   14   19   22   27   32   36   42   46   49   55   61   63   66   68 
LCS_GDT     T     419     T     419     10   11   28     8   10   10   10   10   12   13   15   17   19   21   25   30   33   38   45   54   59   61   67 
LCS_GDT     R     420     R     420      3   11   28     3    3    4    8    8   10   14   19   22   27   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     M     421     M     421      3    6   28     3    3    4    8   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     D     422     D     422      3    6   28     3    3    8    9   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     P     423     P     423      3    6   28     3    3    3    9   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     A     424     A     424      3    5   28     3    4    8    9   14   15   17   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     R     425     R     425      3    9   28     3    4    6    8   10   12   14   18   23   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     D     426     D     426      4    9   28     3    3    4    6    8   12   14   16   20   27   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     T     427     T     427      4    9   28     3    5    6    6   10   12   15   18   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     V     428     V     428      4    9   24     3    5    6    7   10   13   16   21   25   29   35   41   42   46   50   55   61   63   66   68 
LCS_GDT     L     429     L     429      4    9   24     3    4    5    7    9   12   14   17   21   26   34   39   42   46   48   55   61   63   66   68 
LCS_GDT     V     430     V     430      4    9   24     3    4    5    6   10   12   14   17   22   29   35   41   42   46   49   55   61   63   66   68 
LCS_GDT     E     431     E     431      4    9   24     3    5    6    7   10   12   14   17   22   26   33   39   41   46   48   55   61   62   66   68 
LCS_GDT     N     432     N     432      4    9   24     3    5    6    7   10   12   14   17   21   26   31   34   40   44   48   52   57   62   65   68 
LCS_GDT     T     433     T     433      4    9   24     3    5    6    7   10   12   14   17   20   25   28   33   39   44   47   51   56   59   65   66 
LCS_GDT     P     434     P     434      4    8   24     3    4    5    6    8   11   13   14   17   21   24   27   29   37   42   48   51   53   57   60 
LCS_GDT     I     435     I     435      4    6   24     3    4    5    6    8   11   13   14   17   18   20   22   25   26   29   34   37   39   48   53 
LCS_GDT     D     436     D     436      4    6   23     3    4    5    5    6    8   10   14   16   18   20   22   25   26   28   34   37   39   42   47 
LCS_GDT     Y     437     Y     437      4    6   23     3    4    5    5    5    7    7    8   10   10   11   12   16   25   28   34   37   39   42   50 
LCS_GDT     L     438     L     438      4    5   23     3    4    4    4    6    7    8    8   10   14   19   22   25   26   28   34   37   39   41   47 
LCS_GDT     D     439     D     439      4    5   23     3    4    5    6    8   11   13   14   17   18   20   22   25   26   29   34   37   39   42   50 
LCS_GDT     F     440     F     440      4    6   23     3    4    4    4    8   10   12   14   17   18   20   22   25   26   29   34   37   39   47   53 
LCS_GDT     A     441     A     441      5    6   22     3    4    4    6    6    8    8   11   12   15   16   19   21   22   23   27   36   38   39   41 
LCS_GDT     S     442     S     442      5    6   18     3    4    4    5    6    6    7   12   14   15   17   18   20   22   23   27   32   39   47   49 
LCS_GDT     P     443     P     443      5    6   18     3    4    4    5    6    7    8   12   14   15   17   20   23   24   27   30   36   39   47   50 
LCS_GDT     V     444     V     444      5    6   18     3    4    4    5    6    7    8   12   14   15   16   20   23   25   27   30   36   41   47   55 
LCS_GDT     S     445     S     445      5    7   18     3    4    5    6    7    8    9   11   12   14   16   19   21   26   29   34   39   46   49   55 
LCS_GDT     G     446     G     446      4    7   18     3    4    5    6    7    8    9    9   12   14   22   23   25   27   30   36   42   46   52   58 
LCS_GDT     L     447     L     447      4    7   18     3    4    5    6    9   10   11   13   15   20   22   25   28   32   34   40   43   46   53   56 
LCS_GDT     G     448     G     448      4    7   18     3    4    5    6    7   11   12   14   15   18   22   25   29   33   34   40   43   45   50   53 
LCS_GDT     S     449     S     449      4    7   18     3    4    5    6    9   10   13   14   15   17   21   25   29   33   34   40   43   44   49   52 
LCS_GDT     K     450     K     450      4   10   18     4    4    6    8   10   11   13   14   16   18   23   26   29   33   34   40   43   46   50   56 
LCS_GDT     M     451     M     451      4   10   18     4    4    5    8    8   11   12   14   16   17   17   20   24   28   31   35   41   43   46   48 
LCS_GDT     G     452     G     452      4   10   18     4    4    6    8    8   10   12   13   14   16   16   17   19   22   23   29   36   38   41   46 
LCS_GDT     L     453     L     453      4   10   18     4    4    6    8    8   10   12   13   14   16   16   17   19   21   22   25   27   29   32   33 
LCS_GDT     D     454     D     454      4   10   18     3    4    5    6    7   10   12   13   14   16   16   17   20   25   27   28   29   29   33   34 
LCS_GDT     A     455     A     455      4   10   18     3    4    5    6    7   10   12   13   14   16   16   17   19   25   27   28   29   29   33   34 
LCS_GDT     T     456     T     456      4   10   18     3    4    5    8    8   10   12   13   14   16   16   17   19   25   27   28   29   29   33   34 
LCS_GDT     N     457     N     457      4   10   16     3    4    6    8    8   10   12   13   14   16   16   17   19   25   27   28   29   29   33   34 
LCS_GDT     K     458     K     458      4   10   16     3    4    6    8    8   10   12   13   14   16   16   17   19   25   27   28   29   29   33   34 
LCS_GDT     W     459     W     459      4   10   16     3    4    6    8    8   10   12   13   14   16   16   17   18   21   24   27   29   29   33   34 
LCS_GDT     P     460     P     460      4    6   16     0    4    5    5    7   10   12   13   13   16   16   17   19   21   24   27   27   29   33   34 
LCS_GDT     G     461     G     461      4    7   16     1    4    4    4    6    7    7    9   12   14   15   17   18   19   22   25   27   29   30   31 
LCS_GDT     E     462     E     462      3    7   16     3    3    4    5    6    7    7    7    7    8   10   10   16   19   22   25   27   29   30   31 
LCS_GDT     T     463     T     463      3    7   12     3    3    4    5    6    7    7    7    7    7   10   10   11   12   13   25   27   29   30   31 
LCS_GDT     Q     464     Q     464      3    7   12     3    3    4    5    6    7    7    7    7    9   10   11   12   14   21   25   27   29   30   31 
LCS_GDT     R     465     R     465      3    7   12     3    3    4    4    6    7    7    7    8    9   10   11   12   18   21   25   27   29   31   31 
LCS_GDT     E     466     E     466      3    7    9     1    3    4    5    6    7    7    7    7    7    8    8   11   15   21   25   27   29   30   31 
LCS_GDT     W     467     W     467      3    7    9     0    3    4    5    6    7    7    7    7    7    8    8    8    9   17   25   27   29   30   31 
LCS_AVERAGE  LCS_A:  10.56  (   4.55    7.67   19.47 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     12     12     14     15     17     17     21     25     29     35     41     42     46     50     55     61     63     66     68 
GDT PERCENT_CA   9.17  10.00  10.00  11.67  12.50  14.17  14.17  17.50  20.83  24.17  29.17  34.17  35.00  38.33  41.67  45.83  50.83  52.50  55.00  56.67
GDT RMS_LOCAL    0.33   0.47   0.47   1.15   1.56   1.85   1.85   2.86   3.16   3.66   4.09   4.41   4.48   4.86   5.21   5.80   6.14   6.25   6.42   6.57
GDT RMS_ALL_CA  22.71  22.70  22.70  21.90  21.88  21.51  21.51  18.96  19.08  18.83  18.70  18.95  18.91  18.41  19.42  18.72  19.02  19.16  18.96  18.80

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         12.343
LGA    P     349      P     349         15.567
LGA    E     350      E     350         12.180
LGA    I     351      I     351         10.984
LGA    V     352      V     352         13.943
LGA    D     353      D     353         13.730
LGA    F     354      F     354          8.761
LGA    Y     355      Y     355          9.591
LGA    L     356      L     356          7.456
LGA    P     357      P     357          3.501
LGA    P     358      P     358          3.994
LGA    E     359      E     359         10.032
LGA    G     360      G     360         12.580
LGA    C     361      C     361         12.584
LGA    S     362      S     362          6.570
LGA    Y     363      Y     363          8.934
LGA    R     364      R     364         10.311
LGA    L     365      L     365         10.564
LGA    A     366      A     366          6.091
LGA    V     367      V     367          5.941
LGA    V     368      V     368          2.279
LGA    T     369      T     369          1.116
LGA    I     370      I     370          3.905
LGA    K     371      K     371          5.142
LGA    K     372      K     372          6.959
LGA    Q     373      Q     373          9.042
LGA    Y     374      Y     374          6.417
LGA    A     375      A     375          3.445
LGA    G     376      G     376          1.591
LGA    H     377      H     377          4.136
LGA    A     378      A     378          4.393
LGA    K     379      K     379          2.240
LGA    R     380      R     380          5.269
LGA    V     381      V     381          6.120
LGA    M     382      M     382          2.036
LGA    M     383      M     383          4.392
LGA    G     384      G     384          7.730
LGA    V     385      V     385          5.975
LGA    W     386      W     386          2.913
LGA    S     387      S     387          8.285
LGA    F     388      F     388         10.009
LGA    L     389      L     389         12.722
LGA    R     390      R     390         13.139
LGA    Q     391      Q     391         15.292
LGA    F     392      F     392          9.186
LGA    M     393      M     393          7.945
LGA    Y     394      Y     394          0.767
LGA    T     395      T     395          6.980
LGA    K     396      K     396          9.774
LGA    F     397      F     397         12.271
LGA    V     398      V     398         11.471
LGA    I     399      I     399         11.351
LGA    V     400      V     400         10.628
LGA    C     401      C     401         11.524
LGA    D     402      D     402         13.366
LGA    D     403      D     403         16.321
LGA    D     404      D     404         18.600
LGA    V     405      V     405         18.249
LGA    N     406      N     406         14.681
LGA    A     407      A     407         10.279
LGA    R     408      R     408         10.032
LGA    D     409      D     409          5.613
LGA    W     410      W     410          3.092
LGA    N     411      N     411          3.999
LGA    D     412      D     412          3.245
LGA    V     413      V     413          1.703
LGA    I     414      I     414          3.159
LGA    W     415      W     415          6.403
LGA    A     416      A     416          6.880
LGA    I     417      I     417          8.060
LGA    T     418      T     418          9.711
LGA    T     419      T     419         12.791
LGA    R     420      R     420          7.413
LGA    M     421      M     421          2.431
LGA    D     422      D     422          3.395
LGA    P     423      P     423          2.306
LGA    A     424      A     424          2.815
LGA    R     425      R     425          5.615
LGA    D     426      D     426          6.978
LGA    T     427      T     427          4.152
LGA    V     428      V     428          3.823
LGA    L     429      L     429          7.921
LGA    V     430      V     430          7.008
LGA    E     431      E     431         10.009
LGA    N     432      N     432         12.953
LGA    T     433      T     433         14.091
LGA    P     434      P     434         20.291
LGA    I     435      I     435         23.987
LGA    D     436      D     436         26.726
LGA    Y     437      Y     437         25.462
LGA    L     438      L     438         27.582
LGA    D     439      D     439         28.489
LGA    F     440      F     440         29.450
LGA    A     441      A     441         32.409
LGA    S     442      S     442         30.768
LGA    P     443      P     443         31.158
LGA    V     444      V     444         31.716
LGA    S     445      S     445         30.376
LGA    G     446      G     446         26.519
LGA    L     447      L     447         24.111
LGA    G     448      G     448         25.279
LGA    S     449      S     449         24.626
LGA    K     450      K     450         19.643
LGA    M     451      M     451         21.359
LGA    G     452      G     452         21.491
LGA    L     453      L     453         24.953
LGA    D     454      D     454         23.282
LGA    A     455      A     455         28.126
LGA    T     456      T     456         26.688
LGA    N     457      N     457         31.740
LGA    K     458      K     458         33.969
LGA    W     459      W     459         36.061
LGA    P     460      P     460         40.308
LGA    G     461      G     461         42.141
LGA    E     462      E     462         44.440
LGA    T     463      T     463         49.017
LGA    Q     464      Q     464         50.915
LGA    R     465      R     465         47.947
LGA    E     466      E     466         47.751
LGA    W     467      W     467         44.521

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     21    2.86    21.250    17.279     0.710

LGA_LOCAL      RMSD =  2.856  Number of atoms =   21  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.078  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 15.247  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.863282 * X  +   0.318543 * Y  +  -0.391503 * Z  +  62.970318
  Y_new =  -0.355644 * X  +  -0.166490 * Y  +  -0.919673 * Z  +  70.740608
  Z_new =  -0.358137 * X  +   0.933173 * Y  +  -0.030440 * Z  +  52.867180 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.603405   -1.538188  [ DEG:    91.8683    -88.1317 ]
  Theta =   0.366272    2.775321  [ DEG:    20.9858    159.0142 ]
  Phi   =  -0.390780    2.750812  [ DEG:   -22.3901    157.6099 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS393_1-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS393_1-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   21   2.86  17.279    15.25
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS393_1-D3
PFRMAT TS
TARGET T0356
MODEL 1
PARENT N/A
ATOM    348  CA  PHE   348      48.520  64.878  58.902  1.00 25.00           C
ATOM    349  CA  PRO   349      49.365  61.214  58.240  1.00 25.00           C
ATOM    350  CA  GLU   350      53.072  61.298  57.320  1.00 25.00           C
ATOM    351  CA  ILE   351      56.607  61.524  58.528  1.00 25.00           C
ATOM    352  CA  VAL   352      57.480  62.603  62.099  1.00 25.00           C
ATOM    353  CA  ASP   353      56.582  60.837  65.316  1.00 25.00           C
ATOM    354  CA  PHE   354      56.426  63.782  67.795  1.00 25.00           C
ATOM    355  CA  TYR   355      57.299  62.774  71.361  1.00 25.00           C
ATOM    356  CA  LEU   356      57.177  65.405  74.070  1.00 25.00           C
ATOM    357  CA  PRO   357      53.485  65.628  73.169  1.00 25.00           C
ATOM    358  CA  PRO   358      51.626  68.660  74.344  1.00 25.00           C
ATOM    359  CA  GLU   359      50.859  72.378  73.904  1.00 25.00           C
ATOM    360  CA  GLY   360      49.915  72.750  70.274  1.00 25.00           C
ATOM    361  CA  CYS   361      53.142  71.292  68.926  1.00 25.00           C
ATOM    362  CA  SER   362      55.888  69.035  70.402  1.00 25.00           C
ATOM    363  CA  TYR   363      59.493  68.776  71.677  1.00 25.00           C
ATOM    364  CA  ARG   364      60.087  66.110  69.016  1.00 25.00           C
ATOM    365  CA  LEU   365      59.907  66.033  65.186  1.00 25.00           C
ATOM    366  CA  ALA   366      56.450  66.652  63.733  1.00 25.00           C
ATOM    367  CA  VAL   367      53.631  69.266  63.972  1.00 25.00           C
ATOM    368  CA  VAL   368      50.705  68.208  61.741  1.00 25.00           C
ATOM    369  CA  THR   369      48.584  69.805  59.105  1.00 25.00           C
ATOM    370  CA  ILE   370      45.883  71.025  56.683  1.00 25.00           C
ATOM    371  CA  LYS   371      43.457  71.429  53.828  1.00 25.00           C
ATOM    372  CA  LYS   372      42.807  67.826  54.875  1.00 25.00           C
ATOM    373  CA  GLN   373      42.248  65.964  51.648  1.00 25.00           C
ATOM    374  CA  TYR   374      45.652  67.118  50.440  1.00 25.00           C
ATOM    375  CA  ALA   375      46.427  65.663  47.060  1.00 25.00           C
ATOM    376  CA  GLY   376      45.201  62.072  47.580  1.00 25.00           C
ATOM    377  CA  HIS   377      48.404  60.720  45.972  1.00 25.00           C
ATOM    378  CA  ALA   378      50.521  62.951  48.255  1.00 25.00           C
ATOM    379  CA  LYS   379      48.587  61.699  51.314  1.00 25.00           C
ATOM    380  CA  ARG   380      49.145  58.073  50.213  1.00 25.00           C
ATOM    381  CA  VAL   381      52.889  58.756  49.781  1.00 25.00           C
ATOM    382  CA  MET   382      53.034  60.314  53.276  1.00 25.00           C
ATOM    383  CA  MET   383      51.243  57.261  54.739  1.00 25.00           C
ATOM    384  CA  GLY   384      53.724  54.932  52.979  1.00 25.00           C
ATOM    385  CA  VAL   385      56.657  56.965  54.371  1.00 25.00           C
ATOM    386  CA  TRP   386      55.161  56.758  57.891  1.00 25.00           C
ATOM    387  CA  SER   387      54.751  52.968  57.520  1.00 25.00           C
ATOM    388  CA  PHE   388      58.393  52.662  56.374  1.00 25.00           C
ATOM    389  CA  LEU   389      58.327  50.967  59.747  1.00 25.00           C
ATOM    390  CA  ARG   390      55.339  50.707  62.079  1.00 25.00           C
ATOM    391  CA  GLN   391      51.929  50.567  63.746  1.00 25.00           C
ATOM    392  CA  PHE   392      52.554  54.329  64.230  1.00 25.00           C
ATOM    393  CA  MET   393      54.653  54.387  67.388  1.00 25.00           C
ATOM    394  CA  TYR   394      57.955  54.957  65.612  1.00 25.00           C
ATOM    395  CA  THR   395      60.510  52.335  64.548  1.00 25.00           C
ATOM    396  CA  LYS   396      61.259  51.927  68.282  1.00 25.00           C
ATOM    397  CA  PHE   397      60.517  55.366  69.812  1.00 25.00           C
ATOM    398  CA  VAL   398      57.545  57.635  69.438  1.00 25.00           C
ATOM    399  CA  ILE   399      54.241  59.233  68.607  1.00 25.00           C
ATOM    400  CA  VAL   400      52.192  61.389  66.264  1.00 25.00           C
ATOM    401  CA  CYS   401      51.714  65.173  66.218  1.00 25.00           C
ATOM    402  CA  ASP   402      50.028  68.405  67.263  1.00 25.00           C
ATOM    403  CA  ASP   403      49.032  66.351  70.276  1.00 25.00           C
ATOM    404  CA  ASP   404      48.716  62.580  69.764  1.00 25.00           C
ATOM    405  CA  VAL   405      49.404  61.680  73.403  1.00 25.00           C
ATOM    406  CA  ASN   406      45.672  62.305  73.406  1.00 25.00           C
ATOM    407  CA  ALA   407      43.012  63.981  71.267  1.00 25.00           C
ATOM    408  CA  ARG   408      40.788  66.031  73.673  1.00 25.00           C
ATOM    409  CA  ASP   409      39.429  69.248  72.095  1.00 25.00           C
ATOM    410  CA  TRP   410      38.936  69.148  68.337  1.00 25.00           C
ATOM    411  CA  ASN   411      37.200  66.890  65.779  1.00 25.00           C
ATOM    412  CA  ASP   412      39.701  67.972  63.089  1.00 25.00           C
ATOM    413  CA  VAL   413      42.614  67.218  65.458  1.00 25.00           C
ATOM    414  CA  ILE   414      41.145  63.760  66.203  1.00 25.00           C
ATOM    415  CA  TRP   415      40.786  63.077  62.451  1.00 25.00           C
ATOM    416  CA  ALA   416      44.424  64.134  61.886  1.00 25.00           C
ATOM    417  CA  ILE   417      45.563  61.813  64.710  1.00 25.00           C
ATOM    418  CA  THR   418      43.574  58.924  63.171  1.00 25.00           C
ATOM    419  CA  THR   419      45.171  59.612  59.758  1.00 25.00           C
ATOM    420  CA  ARG   420      42.227  60.923  57.700  1.00 25.00           C
ATOM    421  CA  MET   421      39.172  61.856  55.705  1.00 25.00           C
ATOM    422  CA  ASP   422      36.355  59.867  57.219  1.00 25.00           C
ATOM    423  CA  PRO   423      35.763  56.105  56.929  1.00 25.00           C
ATOM    424  CA  ALA   424      36.130  52.309  57.032  1.00 25.00           C
ATOM    425  CA  ARG   425      39.917  51.941  57.106  1.00 25.00           C
ATOM    426  CA  ASP   426      43.605  51.123  56.511  1.00 25.00           C
ATOM    427  CA  THR   427      46.723  52.885  55.451  1.00 25.00           C
ATOM    428  CA  VAL   428      49.009  52.583  52.383  1.00 25.00           C
ATOM    429  CA  LEU   429      51.303  50.855  49.939  1.00 25.00           C
ATOM    430  CA  VAL   430      54.364  48.638  50.192  1.00 25.00           C
ATOM    431  CA  GLU   431      53.930  45.319  48.525  1.00 25.00           C
ATOM    432  CA  ASN   432      57.128  44.160  46.763  1.00 25.00           C
ATOM    433  CA  THR   433      59.504  47.105  46.104  1.00 25.00           C
ATOM    434  CA  PRO   434      59.157  47.617  42.398  1.00 25.00           C
ATOM    435  CA  ILE   435      58.539  51.415  42.153  1.00 25.00           C
ATOM    436  CA  ASP   436      58.709  55.052  43.248  1.00 25.00           C
ATOM    437  CA  TYR   437      59.541  54.996  46.982  1.00 25.00           C
ATOM    438  CA  LEU   438      62.521  57.047  48.257  1.00 25.00           C
ATOM    439  CA  ASP   439      64.914  54.942  46.219  1.00 25.00           C
ATOM    440  CA  PHE   440      66.831  52.277  48.217  1.00 25.00           C
ATOM    441  CA  ALA   441      70.214  52.661  46.570  1.00 25.00           C
ATOM    442  CA  SER   442      72.820  49.975  46.022  1.00 25.00           C
ATOM    443  CA  PRO   443      75.821  49.796  48.328  1.00 25.00           C
ATOM    444  CA  VAL   444      78.872  52.044  48.202  1.00 25.00           C
ATOM    445  CA  SER   445      78.027  55.631  49.061  1.00 25.00           C
ATOM    446  CA  GLY   446      77.107  58.875  50.786  1.00 25.00           C
ATOM    447  CA  LEU   447      74.552  59.119  53.643  1.00 25.00           C
ATOM    448  CA  GLY   448      73.866  61.361  56.669  1.00 25.00           C
ATOM    449  CA  SER   449      70.833  63.678  56.230  1.00 25.00           C
ATOM    450  CA  LYS   450      67.266  63.317  57.481  1.00 25.00           C
ATOM    451  CA  MET   451      65.217  66.261  56.364  1.00 25.00           C
ATOM    452  CA  GLY   452      65.421  68.092  53.062  1.00 25.00           C
ATOM    453  CA  LEU   453      64.741  71.613  51.838  1.00 25.00           C
ATOM    454  CA  ASP   454      62.597  74.490  50.544  1.00 25.00           C
ATOM    455  CA  ALA   455      65.578  76.684  51.240  1.00 25.00           C
ATOM    456  CA  THR   456      64.211  79.807  49.508  1.00 25.00           C
ATOM    457  CA  ASN   457      66.548  82.641  48.399  1.00 25.00           C
ATOM    458  CA  LYS   458      67.279  82.350  44.722  1.00 25.00           C
ATOM    459  CA  TRP   459      70.429  83.444  42.867  1.00 25.00           C
ATOM    460  CA  PRO   460      70.693  87.078  43.946  1.00 25.00           C
ATOM    461  CA  GLY   461      68.977  90.464  43.700  1.00 25.00           C
ATOM    462  CA  GLU   462      68.633  93.806  45.477  1.00 25.00           C
ATOM    463  CA  THR   463      67.893  97.473  45.765  1.00 25.00           C
ATOM    464  CA  GLN   464      65.932  98.881  48.728  1.00 25.00           C
ATOM    465  CA  ARG   465      62.932  98.107  46.556  1.00 25.00           C
ATOM    466  CA  GLU   466      62.408 101.586  45.027  1.00 25.00           C
ATOM    467  CA  TRP   467      62.442  99.452  41.852  1.00 25.00           C
TER
END
