
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS393_2-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS393_2-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33       374 - 406         4.90    19.20
  LCS_AVERAGE:     20.53

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       375 - 390         1.75    18.60
  LONGEST_CONTINUOUS_SEGMENT:    16       376 - 391         1.96    18.58
  LONGEST_CONTINUOUS_SEGMENT:    16       377 - 392         2.00    18.64
  LCS_AVERAGE:      8.32

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       376 - 388         0.75    18.40
  LCS_AVERAGE:      5.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      3    5   16     0    3    3    4    4    5    8    9   13   15   17   18   19   32   37   43   46   50   53   57 
LCS_GDT     P     349     P     349      3    9   16     3    3    5    7    8   10   11   13   17   23   29   33   37   39   44   47   50   52   56   58 
LCS_GDT     E     350     E     350      3    9   16     3    3    5    7    8   10   11   12   14   15   17   33   36   37   39   47   50   52   56   58 
LCS_GDT     I     351     I     351      3    9   16     3    3    3    3    5   10   12   13   16   18   30   33   36   41   45   48   50   53   56   58 
LCS_GDT     V     352     V     352      3    9   16     3    3    5    6    8   10   11   17   21   23   30   33   37   41   45   48   51   53   56   58 
LCS_GDT     D     353     D     353      5    9   19     3    4    5    7    8   10   17   17   21   24   26   32   37   39   44   48   51   54   56   58 
LCS_GDT     F     354     F     354      5    9   19     3    4    5    6    8   11   16   19   22   27   29   32   37   40   44   48   51   54   56   58 
LCS_GDT     Y     355     Y     355      5    9   19     1    4    5    7    8   11   13   17   20   27   29   31   35   39   42   46   51   54   56   58 
LCS_GDT     L     356     L     356      5    9   19     3    4    5    7    8   10   11   12   15   19   23   27   32   35   40   44   47   49   56   57 
LCS_GDT     P     357     P     357      5    9   19     3    4    5    7    8   10   10   12   14   17   21   26   29   34   39   42   46   48   51   53 
LCS_GDT     P     358     P     358      5    6   19     3    4    5    5    6    9   10   12   14   17   20   23   29   34   39   42   46   48   51   53 
LCS_GDT     E     359     E     359      5    6   19     3    4    5    5    7    9   10   12   14   17   20   23   29   34   39   42   46   48   50   53 
LCS_GDT     G     360     G     360      5    6   19     3    4    5    5    6    6    8   11   14   17   20   23   25   27   36   42   44   48   50   52 
LCS_GDT     C     361     C     361      3    6   19     3    3    4    5    6    6    7    9   10   13   17   18   20   24   28   31   43   45   48   49 
LCS_GDT     S     362     S     362      3   10   20     3    3    4    5   11   12   12   13   16   19   20   25   28   34   40   44   47   49   56   57 
LCS_GDT     Y     363     Y     363      5   10   20     3    6    6    8   11   12   13   16   18   22   28   30   35   37   41   44   47   49   56   57 
LCS_GDT     R     364     R     364      5   10   20     3    6    6    8   11   12   13   16   20   24   28   30   35   37   41   44   47   49   56   57 
LCS_GDT     L     365     L     365      5   10   20     2    6    6    8   11   12   14   19   21   27   29   31   35   38   42   46   51   54   56   57 
LCS_GDT     A     366     A     366      5   10   20     3    6    6    8   11   12   15   19   24   29   31   33   37   41   45   48   51   54   56   58 
LCS_GDT     V     367     V     367      5   10   20     3    6    7    9   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     V     368     V     368      5   10   26     3    6    6    8   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     T     369     T     369      5   10   26     3    5    5    7   11   12   15   17   20   23   28   32   36   39   41   47   50   50   54   57 
LCS_GDT     I     370     I     370      5   10   26     3    5    6    8   11   12   13   15   19   20   22   25   27   31   36   40   46   47   48   53 
LCS_GDT     K     371     K     371      5   10   26     3    5    6    8   11   12   13   14   17   20   22   25   27   31   36   40   46   47   48   53 
LCS_GDT     K     372     K     372      5    9   26     3    5    6    8   11   12   13   14   17   20   24   27   32   35   40   44   47   48   51   55 
LCS_GDT     Q     373     Q     373      4    9   29     3    4    4    8   11   12   13   14   17   22   24   29   32   35   40   44   47   48   51   55 
LCS_GDT     Y     374     Y     374      4    6   33     3    4    4    6    7    7    8   13   18   22   24   29   32   34   38   44   47   48   51   55 
LCS_GDT     A     375     A     375      4   16   33     3    4    4    6   12   17   18   21   22   24   26   29   31   34   37   39   43   47   51   55 
LCS_GDT     G     376     G     376     13   16   33     5   13   15   15   17   18   19   21   24   27   28   30   36   39   42   48   51   54   56   58 
LCS_GDT     H     377     H     377     13   16   33    11   13   15   15   17   18   19   22   24   27   27   34   38   41   45   48   51   54   56   58 
LCS_GDT     A     378     A     378     13   16   33    11   13   15   15   17   18   19   22   25   29   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     K     379     K     379     13   16   33    11   13   15   15   17   18   19   21   24   29   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     R     380     R     380     13   16   33    11   13   15   15   17   18   19   22   24   29   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     V     381     V     381     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     M     382     M     382     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     M     383     M     383     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     G     384     G     384     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     V     385     V     385     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     W     386     W     386     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     S     387     S     387     13   16   33    11   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     F     388     F     388     13   16   33     5    7   13   15   17   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     L     389     L     389      6   16   33     3    8   12   15   17   18   19   22   24   28   32   35   38   41   45   48   51   54   56   58 
LCS_GDT     R     390     R     390      6   16   33     3    4    6   11   15   17   19   22   24   27   32   35   37   41   45   48   51   54   56   58 
LCS_GDT     Q     391     Q     391      6   16   33     3    4    6    8   10   14   16   18   20   27   29   33   34   40   44   48   50   52   56   58 
LCS_GDT     F     392     F     392      5   16   33     3    4    6    7   11   17   18   19   24   27   32   35   37   40   45   48   51   54   56   58 
LCS_GDT     M     393     M     393      4    8   33     3    5   15   15   17   18   19   22   26   30   32   35   38   41   45   48   51   54   56   58 
LCS_GDT     Y     394     Y     394      4    9   33     3    3    5    8   15   17   19   21   22   27   29   33   36   39   44   48   51   54   56   58 
LCS_GDT     T     395     T     395      5    9   33     3    3    6    8   14   17   19   21   22   27   29   32   35   38   42   46   51   54   56   58 
LCS_GDT     K     396     K     396      5    9   33     3    5    6    7    9   11   14   15   16   19   22   24   30   32   38   44   47   48   53   56 
LCS_GDT     F     397     F     397      5    9   33     3    5    6    7    9   12   14   20   21   22   23   27   32   35   40   44   48   53   56   57 
LCS_GDT     V     398     V     398      5    9   33     3    4    5    7   11   17   19   20   22   22   28   30   35   37   42   46   51   54   56   58 
LCS_GDT     I     399     I     399      5    9   33     3    5    6    8   12   17   19   20   22   27   30   33   37   41   45   48   51   54   56   58 
LCS_GDT     V     400     V     400      4    9   33     3    5    7   11   16   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     C     401     C     401      4    9   33     3   12   15   15   17   19   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     D     402     D     402      4    9   33     3    4    5    7    9   11   18   21   25   28   32   35   37   39   42   47   50   53   55   58 
LCS_GDT     D     403     D     403      4    8   33     3    5    5    6    8   17   18   22   27   30   32   35   39   41   45   48   51   53   56   58 
LCS_GDT     D     404     D     404      4    8   33     6   13   15   15   17   20   23   26   28   30   32   35   39   41   45   48   51   53   56   58 
LCS_GDT     V     405     V     405      4    8   33     3    5   10   13   16   17   19   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     N     406     N     406      4    8   33     3    5    6    6   10   14   16   21   25   29   31   33   37   41   45   48   51   54   56   58 
LCS_GDT     A     407     A     407      3   14   25     3    3   12   13   13   14   15   16   20   23   28   32   35   38   42   46   51   54   56   58 
LCS_GDT     R     408     R     408     12   14   25     3    9   11   12   13   14   14   15   17   19   24   27   30   33   39   44   47   48   56   57 
LCS_GDT     D     409     D     409     12   14   25     3   11   12   13   13   14   15   16   19   22   28   29   35   36   41   44   47   51   56   57 
LCS_GDT     W     410     W     410     12   14   25     8   11   12   13   13   14   15   16   20   23   28   32   37   41   43   48   51   54   56   58 
LCS_GDT     N     411     N     411     12   14   25     8   11   12   13   13   14   19   22   26   29   31   35   39   41   45   48   51   54   56   58 
LCS_GDT     D     412     D     412     12   14   25     8   11   12   13   13   14   15   20   26   29   31   35   39   41   45   48   51   54   56   58 
LCS_GDT     V     413     V     413     12   14   25     8   11   12   13   13   14   19   22   27   29   31   35   39   41   45   48   51   54   56   58 
LCS_GDT     I     414     I     414     12   14   25     8   11   12   13   13   18   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     W     415     W     415     12   14   25     8   11   12   13   13   18   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     A     416     A     416     12   14   25     8   11   12   13   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     I     417     I     417     12   14   25     8   11   12   13   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     T     418     T     418     12   14   25     8   11   12   13   13   19   23   25   28   30   32   35   38   41   45   48   51   54   56   58 
LCS_GDT     T     419     T     419     12   14   25     4   11   12   13   13   14   15   16   19   28   32   35   37   41   45   48   51   54   56   58 
LCS_GDT     R     420     R     420     12   14   25     3    7    9   13   13   14   15   19   21   28   32   35   38   41   45   48   51   54   56   58 
LCS_GDT     M     421     M     421      4    5   25     3    4    4    8   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     D     422     D     422      4    5   25     4    6    6    8   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     P     423     P     423      4    5   25     3    4    6    8   10   16   22   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     A     424     A     424      4    7   25     4    6    6    8   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     R     425     R     425      4    7   25     3    5    7   10   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     D     426     D     426      4    7   25     3    4    4    5    9   17   22   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     T     427     T     427      4    8   25     3    4    4    5    7   10   13   22   27   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     V     428     V     428      4    8   25     3    5    7   10   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     L     429     L     429      4    8   25     2    5    7   10   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     V     430     V     430      4    8   25     3    4    5   10   14   18   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     E     431     E     431      4    8   23     3    6    6    8   13   20   23   26   28   30   32   35   39   41   45   48   51   54   56   58 
LCS_GDT     N     432     N     432      4    8   23     4    4    5    7    8   10   11   15   20   29   32   35   39   41   45   48   50   53   56   58 
LCS_GDT     T     433     T     433      4    8   22     4    4    5    7    7   10   11   13   18   24   28   32   37   37   41   45   48   50   55   58 
LCS_GDT     P     434     P     434      5    8   21     4    4    6    7    7   10   11   11   15   16   19   24   26   30   35   40   44   49   54   56 
LCS_GDT     I     435     I     435      5    7   21     4    4    6    7    7    8   11   13   16   18   26   32   34   37   41   45   47   50   54   56 
LCS_GDT     D     436     D     436      5    7   14     3    4    6    6    7    7    8    9   10   17   17   24   26   28   33   38   43   47   54   56 
LCS_GDT     Y     437     Y     437      5    7   14     3    4    6    6    7   10   11   11   13   13   18   20   24   26   36   45   47   50   54   57 
LCS_GDT     L     438     L     438      5    7   17     3    4    6    6    7    9   12   13   15   18   20   22   24   26   42   45   48   50   54   57 
LCS_GDT     D     439     D     439      4    7   19     3    4    4    4    6   10   13   19   23   26   31   35   39   41   45   48   50   53   56   58 
LCS_GDT     F     440     F     440      4    7   19     3    4    6    6    7    9   13   19   23   26   31   35   38   41   45   48   50   53   55   58 
LCS_GDT     A     441     A     441      4    7   19     3    4    4    5    7    8   14   16   18   25   31   35   39   41   45   48   50   53   56   58 
LCS_GDT     S     442     S     442      3    5   19     3    3    4    5    6    7    7    8    8   15   21   23   30   33   37   39   46   52   54   57 
LCS_GDT     P     443     P     443      3    5   20     3    3    4    5    6    7    7   13   15   19   21   26   27   29   33   37   44   48   50   53 
LCS_GDT     V     444     V     444      3    5   21     3    3    4    5    6    7    9   12   15   19   21   26   27   29   33   36   40   42   45   49 
LCS_GDT     S     445     S     445      3    9   21     3    3    3    4    7    9   11   12   15   19   21   26   27   29   32   36   40   42   45   49 
LCS_GDT     G     446     G     446      4   10   21     4    5    5    8    8   11   13   13   15   17   20   23   27   29   32   35   36   42   45   49 
LCS_GDT     L     447     L     447      4   10   21     4    5    5    8   10   11   13   14   15   18   20   26   27   29   32   36   40   42   45   48 
LCS_GDT     G     448     G     448      5   10   21     4    5    6    8   10   11   13   14   16   18   20   25   27   29   32   36   40   43   47   52 
LCS_GDT     S     449     S     449      5   10   21     4    5    6    8   10   11   12   15   16   18   20   22   24   28   31   35   40   45   49   52 
LCS_GDT     K     450     K     450      5   10   21     4    4    6    8   10   11   14   15   16   18   20   22   24   32   36   38   40   45   48   50 
LCS_GDT     M     451     M     451      5   10   21     3    4    6    8   10   11   13   14   15   18   20   22   24   26   30   36   41   45   49   53 
LCS_GDT     G     452     G     452      5   10   21     3    4    6    8    8   10   12   14   15   16   18   19   24   26   28   29   31   36   48   50 
LCS_GDT     L     453     L     453      3   10   21     3    4    6    8   10   11   13   14   15   18   20   22   24   31   36   40   46   48   51   53 
LCS_GDT     D     454     D     454      3   10   21     4    4    5    6    8   10   12   14   15   19   21   23   27   30   34   40   46   47   48   53 
LCS_GDT     A     455     A     455      3   10   21     3    4    5    8   10   11   13   14   15   18   21   23   27   29   33   35   40   43   48   50 
LCS_GDT     T     456     T     456      3    8   21     1    4    6    8   10   11   13   14   15   18   20   22   24   26   29   31   35   39   44   47 
LCS_GDT     N     457     N     457      4    8   21     0    4    6    8   10   11   13   14   15   18   20   22   24   26   27   29   34   36   41   42 
LCS_GDT     K     458     K     458      4    7   21     0    3    4    7   10   11   13   14   15   18   20   22   24   26   27   29   34   38   41   43 
LCS_GDT     W     459     W     459      4    7   21     0    3    4    6   10   11   13   14   15   18   20   22   24   26   27   29   32   35   38   40 
LCS_GDT     P     460     P     460      4    7   21     1    3    6    8   10   11   13   14   15   18   20   22   24   26   27   29   32   35   38   40 
LCS_GDT     G     461     G     461      3    7   21     1    3    6    7   10   11   12   14   15   18   20   22   24   26   27   29   31   32   35   39 
LCS_GDT     E     462     E     462      3    7   21     3    3    4    6    6    7    8   10   12   13   15   17   24   25   27   29   31   32   35   39 
LCS_GDT     T     463     T     463      3    7   21     3    3    4    6    6    7    8   10   12   13   14   17   19   24   26   27   30   32   34   39 
LCS_GDT     Q     464     Q     464      4    7   21     3    4    4    6    6    7    8   10   12   13   14   17   20   24   26   27   30   32   34   39 
LCS_GDT     R     465     R     465      4    7   19     3    4    4    6    6    7    8   10   12   13   14   15   17   20   22   25   29   34   42   46 
LCS_GDT     E     466     E     466      4    7   13     3    4    4    6    6    7    8   10   13   19   21   23   27   29   31   34   39   41   46   48 
LCS_GDT     W     467     W     467      4    7   13     2    4    4    6    6    7    8   10   12   16   20   23   27   29   33   35   40   43   47   49 
LCS_AVERAGE  LCS_A:  11.29  (   5.01    8.32   20.53 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     15     17     20     23     26     28     30     32     35     39     41     45     48     51     54     56     58 
GDT PERCENT_CA   9.17  10.83  12.50  12.50  14.17  16.67  19.17  21.67  23.33  25.00  26.67  29.17  32.50  34.17  37.50  40.00  42.50  45.00  46.67  48.33
GDT RMS_LOCAL    0.33   0.49   0.69   0.69   1.15   2.42   2.53   2.84   2.96   3.14   3.36   3.76   4.37   4.40   4.77   5.14   5.58   5.86   5.98   6.24
GDT RMS_ALL_CA  18.38  18.52  18.52  18.52  18.37  17.61  17.50  17.58  17.56  17.66  17.58  17.56  17.49  17.75  17.78  17.85  18.25  18.36  18.19  17.50

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         10.841
LGA    P     349      P     349         10.374
LGA    E     350      E     350         10.802
LGA    I     351      I     351          8.152
LGA    V     352      V     352          8.699
LGA    D     353      D     353         11.177
LGA    F     354      F     354         11.085
LGA    Y     355      Y     355         14.413
LGA    L     356      L     356         16.155
LGA    P     357      P     357         21.812
LGA    P     358      P     358         27.635
LGA    E     359      E     359         27.891
LGA    G     360      G     360         22.979
LGA    C     361      C     361         22.803
LGA    S     362      S     362         21.500
LGA    Y     363      Y     363         21.151
LGA    R     364      R     364         21.336
LGA    L     365      L     365         15.693
LGA    A     366      A     366          8.853
LGA    V     367      V     367          3.024
LGA    V     368      V     368          2.989
LGA    T     369      T     369         10.436
LGA    I     370      I     370         16.299
LGA    K     371      K     371         23.108
LGA    K     372      K     372         22.304
LGA    Q     373      Q     373         23.682
LGA    Y     374      Y     374         19.620
LGA    A     375      A     375         14.809
LGA    G     376      G     376          9.905
LGA    H     377      H     377          7.434
LGA    A     378      A     378          5.898
LGA    K     379      K     379          6.537
LGA    R     380      R     380          5.491
LGA    V     381      V     381          2.574
LGA    M     382      M     382          2.728
LGA    M     383      M     383          1.891
LGA    G     384      G     384          2.316
LGA    V     385      V     385          2.544
LGA    W     386      W     386          2.430
LGA    S     387      S     387          3.282
LGA    F     388      F     388          3.351
LGA    L     389      L     389          8.999
LGA    R     390      R     390         10.289
LGA    Q     391      Q     391         12.247
LGA    F     392      F     392          9.563
LGA    M     393      M     393          7.316
LGA    Y     394      Y     394         12.499
LGA    T     395      T     395         13.973
LGA    K     396      K     396         17.402
LGA    F     397      F     397         14.874
LGA    V     398      V     398         11.450
LGA    I     399      I     399          7.450
LGA    V     400      V     400          2.199
LGA    C     401      C     401          4.097
LGA    D     402      D     402          7.766
LGA    D     403      D     403          5.269
LGA    D     404      D     404          3.617
LGA    V     405      V     405          5.247
LGA    N     406      N     406          9.766
LGA    A     407      A     407         12.655
LGA    R     408      R     408         18.407
LGA    D     409      D     409         14.932
LGA    W     410      W     410         11.619
LGA    N     411      N     411          8.486
LGA    D     412      D     412          8.622
LGA    V     413      V     413          6.353
LGA    I     414      I     414          3.786
LGA    W     415      W     415          3.112
LGA    A     416      A     416          2.396
LGA    I     417      I     417          3.253
LGA    T     418      T     418          5.016
LGA    T     419      T     419          7.855
LGA    R     420      R     420          7.013
LGA    M     421      M     421          2.431
LGA    D     422      D     422          1.880
LGA    P     423      P     423          3.598
LGA    A     424      A     424          1.580
LGA    R     425      R     425          2.214
LGA    D     426      D     426          3.957
LGA    T     427      T     427          5.277
LGA    V     428      V     428          2.360
LGA    L     429      L     429          3.197
LGA    V     430      V     430          2.934
LGA    E     431      E     431          3.134
LGA    N     432      N     432          8.027
LGA    T     433      T     433         12.805
LGA    P     434      P     434         17.963
LGA    I     435      I     435         16.396
LGA    D     436      D     436         17.945
LGA    Y     437      Y     437         15.694
LGA    L     438      L     438         14.583
LGA    D     439      D     439         10.042
LGA    F     440      F     440         11.722
LGA    A     441      A     441         10.321
LGA    S     442      S     442         16.841
LGA    P     443      P     443         21.175
LGA    V     444      V     444         26.192
LGA    S     445      S     445         28.385
LGA    G     446      G     446         27.364
LGA    L     447      L     447         26.422
LGA    G     448      G     448         21.732
LGA    S     449      S     449         20.125
LGA    K     450      K     450         18.938
LGA    M     451      M     451         21.092
LGA    G     452      G     452         21.956
LGA    L     453      L     453         22.267
LGA    D     454      D     454         20.348
LGA    A     455      A     455         20.761
LGA    T     456      T     456         21.773
LGA    N     457      N     457         25.509
LGA    K     458      K     458         30.609
LGA    W     459      W     459         34.997
LGA    P     460      P     460         37.843
LGA    G     461      G     461         38.787
LGA    E     462      E     462         38.022
LGA    T     463      T     463         41.590
LGA    Q     464      Q     464         44.155
LGA    R     465      R     465         42.872
LGA    E     466      E     466         39.364
LGA    W     467      W     467         33.188

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     26    2.84    21.250    17.811     0.884

LGA_LOCAL      RMSD =  2.841  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.545  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 15.851  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.621549 * X  +   0.758520 * Y  +   0.195765 * Z  +  55.468430
  Y_new =   0.539499 * X  +  -0.595662 * Y  +   0.595086 * Z  +  64.116150
  Z_new =   0.567995 * X  +  -0.264260 * Y  +  -0.779454 * Z  +  74.096375 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.814722    0.326871  [ DEG:  -161.2717     18.7283 ]
  Theta =  -0.604068   -2.537525  [ DEG:   -34.6105   -145.3895 ]
  Phi   =   0.714846   -2.426746  [ DEG:    40.9577   -139.0423 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS393_2-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS393_2-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   26   2.84  17.811    15.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS393_2-D3
PFRMAT TS
TARGET T0356
MODEL 2
PARENT N/A
ATOM    348  CA  PHE   348      67.046  71.249  56.806  1.00 25.00           C
ATOM    349  CA  PRO   349      65.075  68.657  54.903  1.00 25.00           C
ATOM    350  CA  GLU   350      63.340  69.261  51.578  1.00 25.00           C
ATOM    351  CA  ILE   351      61.165  71.746  53.402  1.00 25.00           C
ATOM    352  CA  VAL   352      57.789  70.561  52.219  1.00 25.00           C
ATOM    353  CA  ASP   353      54.782  68.794  50.618  1.00 25.00           C
ATOM    354  CA  PHE   354      52.850  65.674  51.742  1.00 25.00           C
ATOM    355  CA  TYR   355      49.608  67.606  51.532  1.00 25.00           C
ATOM    356  CA  LEU   356      46.902  65.409  52.933  1.00 25.00           C
ATOM    357  CA  PRO   357      44.652  66.312  50.017  1.00 25.00           C
ATOM    358  CA  PRO   358      44.761  69.592  48.146  1.00 25.00           C
ATOM    359  CA  GLU   359      43.285  72.615  49.903  1.00 25.00           C
ATOM    360  CA  GLY   360      43.455  70.968  53.348  1.00 25.00           C
ATOM    361  CA  CYS   361      45.977  71.264  56.213  1.00 25.00           C
ATOM    362  CA  SER   362      48.707  73.862  55.394  1.00 25.00           C
ATOM    363  CA  TYR   363      52.084  75.537  54.867  1.00 25.00           C
ATOM    364  CA  ARG   364      55.674  74.810  55.993  1.00 25.00           C
ATOM    365  CA  LEU   365      53.311  73.190  58.492  1.00 25.00           C
ATOM    366  CA  ALA   366      51.002  70.854  60.399  1.00 25.00           C
ATOM    367  CA  VAL   367      49.779  68.464  63.134  1.00 25.00           C
ATOM    368  CA  VAL   368      50.928  65.135  61.831  1.00 25.00           C
ATOM    369  CA  THR   369      52.070  62.512  64.296  1.00 25.00           C
ATOM    370  CA  ILE   370      50.799  59.273  65.896  1.00 25.00           C
ATOM    371  CA  LYS   371      49.489  55.945  67.253  1.00 25.00           C
ATOM    372  CA  LYS   372      46.756  54.264  65.233  1.00 25.00           C
ATOM    373  CA  GLN   373      44.116  54.263  62.556  1.00 25.00           C
ATOM    374  CA  TYR   374      45.026  57.718  61.144  1.00 25.00           C
ATOM    375  CA  ALA   375      42.882  59.964  58.901  1.00 25.00           C
ATOM    376  CA  GLY   376      44.040  58.106  55.758  1.00 25.00           C
ATOM    377  CA  HIS   377      45.432  61.368  54.313  1.00 25.00           C
ATOM    378  CA  ALA   378      47.292  62.055  57.591  1.00 25.00           C
ATOM    379  CA  LYS   379      48.755  58.516  57.529  1.00 25.00           C
ATOM    380  CA  ARG   380      49.889  59.020  53.906  1.00 25.00           C
ATOM    381  CA  VAL   381      51.534  62.346  54.858  1.00 25.00           C
ATOM    382  CA  MET   382      53.330  60.648  57.783  1.00 25.00           C
ATOM    383  CA  MET   383      54.563  57.874  55.447  1.00 25.00           C
ATOM    384  CA  GLY   384      55.839  60.498  52.965  1.00 25.00           C
ATOM    385  CA  VAL   385      57.665  62.322  55.795  1.00 25.00           C
ATOM    386  CA  TRP   386      59.256  59.027  56.926  1.00 25.00           C
ATOM    387  CA  SER   387      60.380  58.309  53.336  1.00 25.00           C
ATOM    388  CA  PHE   388      61.900  61.815  53.084  1.00 25.00           C
ATOM    389  CA  LEU   389      64.978  60.669  51.189  1.00 25.00           C
ATOM    390  CA  ARG   390      65.241  57.030  52.271  1.00 25.00           C
ATOM    391  CA  GLN   391      67.621  56.000  55.064  1.00 25.00           C
ATOM    392  CA  PHE   392      67.182  58.693  57.735  1.00 25.00           C
ATOM    393  CA  MET   393      63.710  59.991  56.806  1.00 25.00           C
ATOM    394  CA  TYR   394      63.294  63.635  57.547  1.00 25.00           C
ATOM    395  CA  THR   395      60.963  66.523  56.601  1.00 25.00           C
ATOM    396  CA  LYS   396      59.211  66.324  53.259  1.00 25.00           C
ATOM    397  CA  PHE   397      56.059  67.470  55.158  1.00 25.00           C
ATOM    398  CA  VAL   398      52.699  69.251  55.326  1.00 25.00           C
ATOM    399  CA  ILE   399      49.566  68.099  57.097  1.00 25.00           C
ATOM    400  CA  VAL   400      46.798  66.171  58.861  1.00 25.00           C
ATOM    401  CA  CYS   401      46.014  69.257  60.835  1.00 25.00           C
ATOM    402  CA  ASP   402      42.939  69.518  63.090  1.00 25.00           C
ATOM    403  CA  ASP   403      42.236  71.590  60.021  1.00 25.00           C
ATOM    404  CA  ASP   404      43.007  75.111  61.189  1.00 25.00           C
ATOM    405  CA  VAL   405      44.153  76.617  57.837  1.00 25.00           C
ATOM    406  CA  ASN   406      41.449  76.378  55.132  1.00 25.00           C
ATOM    407  CA  ALA   407      38.025  75.341  56.453  1.00 25.00           C
ATOM    408  CA  ARG   408      34.580  74.822  54.853  1.00 25.00           C
ATOM    409  CA  ASP   409      33.153  75.090  58.365  1.00 25.00           C
ATOM    410  CA  TRP   410      34.988  73.389  61.295  1.00 25.00           C
ATOM    411  CA  ASN   411      32.831  70.326  62.091  1.00 25.00           C
ATOM    412  CA  ASP   412      33.913  68.680  58.806  1.00 25.00           C
ATOM    413  CA  VAL   413      37.586  69.386  59.635  1.00 25.00           C
ATOM    414  CA  ILE   414      37.120  67.857  63.114  1.00 25.00           C
ATOM    415  CA  TRP   415      35.502  64.753  61.562  1.00 25.00           C
ATOM    416  CA  ALA   416      38.422  64.429  59.104  1.00 25.00           C
ATOM    417  CA  ILE   417      40.918  64.716  61.994  1.00 25.00           C
ATOM    418  CA  THR   418      39.024  62.010  63.932  1.00 25.00           C
ATOM    419  CA  THR   419      39.078  59.734  60.852  1.00 25.00           C
ATOM    420  CA  ARG   420      38.304  58.051  57.500  1.00 25.00           C
ATOM    421  CA  MET   421      35.271  60.238  57.600  1.00 25.00           C
ATOM    422  CA  ASP   422      35.279  58.731  54.081  1.00 25.00           C
ATOM    423  CA  PRO   423      34.460  55.465  55.774  1.00 25.00           C
ATOM    424  CA  ALA   424      36.778  52.669  54.633  1.00 25.00           C
ATOM    425  CA  ARG   425      40.232  53.006  53.166  1.00 25.00           C
ATOM    426  CA  ASP   426      43.331  54.462  51.537  1.00 25.00           C
ATOM    427  CA  THR   427      46.978  54.554  52.450  1.00 25.00           C
ATOM    428  CA  VAL   428      48.820  53.624  55.611  1.00 25.00           C
ATOM    429  CA  LEU   429      50.952  50.958  57.278  1.00 25.00           C
ATOM    430  CA  VAL   430      52.503  47.804  58.721  1.00 25.00           C
ATOM    431  CA  GLU   431      50.309  45.515  56.547  1.00 25.00           C
ATOM    432  CA  ASN   432      48.814  42.205  57.635  1.00 25.00           C
ATOM    433  CA  THR   433      47.919  40.047  60.623  1.00 25.00           C
ATOM    434  CA  PRO   434      44.453  40.519  62.142  1.00 25.00           C
ATOM    435  CA  ILE   435      44.345  42.722  65.274  1.00 25.00           C
ATOM    436  CA  ASP   436      43.412  46.428  65.606  1.00 25.00           C
ATOM    437  CA  TYR   437      46.467  46.458  67.793  1.00 25.00           C
ATOM    438  CA  LEU   438      45.884  49.320  70.166  1.00 25.00           C
ATOM    439  CA  ASP   439      46.565  47.317  73.308  1.00 25.00           C
ATOM    440  CA  PHE   440      43.311  48.560  74.862  1.00 25.00           C
ATOM    441  CA  ALA   441      42.921  46.571  78.067  1.00 25.00           C
ATOM    442  CA  SER   442      41.616  45.796  81.527  1.00 25.00           C
ATOM    443  CA  PRO   443      39.156  48.476  82.695  1.00 25.00           C
ATOM    444  CA  VAL   444      37.184  51.719  82.363  1.00 25.00           C
ATOM    445  CA  SER   445      37.998  54.651  84.614  1.00 25.00           C
ATOM    446  CA  GLY   446      39.840  55.991  81.569  1.00 25.00           C
ATOM    447  CA  LEU   447      42.819  58.442  81.324  1.00 25.00           C
ATOM    448  CA  GLY   448      45.752  59.570  79.131  1.00 25.00           C
ATOM    449  CA  SER   449      47.189  61.617  76.281  1.00 25.00           C
ATOM    450  CA  LYS   450      49.668  64.423  75.504  1.00 25.00           C
ATOM    451  CA  MET   451      51.627  67.586  76.085  1.00 25.00           C
ATOM    452  CA  GLY   452      53.905  70.202  74.616  1.00 25.00           C
ATOM    453  CA  LEU   453      55.025  72.540  71.813  1.00 25.00           C
ATOM    454  CA  ASP   454      55.286  73.289  68.082  1.00 25.00           C
ATOM    455  CA  ALA   455      53.779  76.600  66.965  1.00 25.00           C
ATOM    456  CA  THR   456      52.679  80.174  66.165  1.00 25.00           C
ATOM    457  CA  ASN   457      52.300  83.847  65.603  1.00 25.00           C
ATOM    458  CA  LYS   458      50.211  87.018  66.157  1.00 25.00           C
ATOM    459  CA  TRP   459      50.222  90.576  67.407  1.00 25.00           C
ATOM    460  CA  PRO   460      46.503  90.491  68.127  1.00 25.00           C
ATOM    461  CA  GLY   461      43.259  88.673  68.520  1.00 25.00           C
ATOM    462  CA  GLU   462      39.767  89.559  69.822  1.00 25.00           C
ATOM    463  CA  THR   463      39.100  91.585  73.016  1.00 25.00           C
ATOM    464  CA  GLN   464      37.320  90.031  75.937  1.00 25.00           C
ATOM    465  CA  ARG   465      37.210  88.270  79.367  1.00 25.00           C
ATOM    466  CA  GLU   466      39.523  85.260  79.183  1.00 25.00           C
ATOM    467  CA  TRP   467      39.213  81.629  78.014  1.00 25.00           C
TER
END
