
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS393_3-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS393_3-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       356 - 390         4.92    16.48
  LCS_AVERAGE:     21.62

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       375 - 389         1.67    15.37
  LONGEST_CONTINUOUS_SEGMENT:    15       376 - 390         1.75    14.98
  LCS_AVERAGE:      7.74

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       376 - 388         0.75    15.81
  LCS_AVERAGE:      4.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      4    6   17     3    4    6    7    9   11   12   13   18   20   23   28   33   38   42   47   52   61   67   71 
LCS_GDT     P     349     P     349      4    6   17     3    5    6    8    9   11   12   13   18   20   23   28   33   38   40   47   52   61   68   72 
LCS_GDT     E     350     E     350      4   10   17     3    4    6    8    9   11   12   13   18   20   23   28   33   38   40   46   52   61   68   72 
LCS_GDT     I     351     I     351      4   10   17     3    4    6    8    9   11   12   13   18   20   27   31   33   38   46   53   59   62   68   72 
LCS_GDT     V     352     V     352      4   10   17     3    4    4    7    8    9   11   12   13   16   18   22   28   36   40   45   52   59   67   72 
LCS_GDT     D     353     D     353      4   10   17     3    4    6    7    9   11   12   13   16   20   27   31   33   39   44   52   59   62   68   72 
LCS_GDT     F     354     F     354      4   10   17     3    5    6    8    9   12   16   22   26   29   31   34   40   45   50   53   59   62   68   72 
LCS_GDT     Y     355     Y     355      4   10   34     3    5    6   10   11   14   19   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     L     356     L     356      4   10   35     3    5    7   11   14   17   20   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     P     357     P     357      4   10   35     3    5    7   11   14   17   20   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     P     358     P     358      4   10   35     3    4    6    7    9   11   12   20   24   28   32   36   40   45   50   53   57   62   68   72 
LCS_GDT     E     359     E     359      4   10   35     5   13   13   15   16   18   21   24   26   28   32   36   40   44   47   51   57   60   66   71 
LCS_GDT     G     360     G     360      4    8   35     0    3    4   12   14   14   14   22   26   27   30   33   38   42   43   48   54   60   64   68 
LCS_GDT     C     361     C     361      3    6   35     3    3    4    5    9   10   12   15   21   27   30   32   37   42   43   48   51   53   58   59 
LCS_GDT     S     362     S     362      3   10   35     3    3   15   16   17   18   21   24   26   28   32   35   39   42   44   50   54   60   65   69 
LCS_GDT     Y     363     Y     363      5   10   35     3    4   10   16   17   18   21   24   26   28   32   35   39   42   44   50   54   60   65   69 
LCS_GDT     R     364     R     364      5   10   35     3    4    6    8    9   13   16   19   24   27   29   35   39   41   43   48   51   55   60   65 
LCS_GDT     L     365     L     365      5   10   35     3    4    6    8    9   11   17   21   23   26   32   35   39   42   43   48   54   58   65   69 
LCS_GDT     A     366     A     366      5   10   35     2    4    5    8   11   13   17   21   25   28   32   35   40   44   50   53   59   62   68   72 
LCS_GDT     V     367     V     367      5   10   35     2    4    6    8   10   12   15   19   23   27   32   35   40   44   50   53   59   62   68   72 
LCS_GDT     V     368     V     368      4   10   35     1    4    8   11   14   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     T     369     T     369      4   10   35     3    4    5    8    9   13   20   24   25   28   32   35   39   42   47   52   59   62   68   72 
LCS_GDT     I     370     I     370      4   10   35     3    4    6   10   13   18   21   24   25   28   32   35   39   42   45   50   55   60   65   70 
LCS_GDT     K     371     K     371      4   10   35     3    4    6    9   13   16   20   24   25   28   32   35   39   41   44   48   51   55   61   68 
LCS_GDT     K     372     K     372      4    6   35     3    3    4    5   12   17   20   24   25   28   32   35   39   41   45   48   51   55   63   69 
LCS_GDT     Q     373     Q     373      4    6   35     3    3    4    5    6    9   12   19   21   26   28   33   34   39   43   48   51   55   59   64 
LCS_GDT     Y     374     Y     374      3    5   35     3    3    4    4    5    6    6   13   17   27   30   33   39   41   45   48   51   55   60   64 
LCS_GDT     A     375     A     375      3   15   35     3    3    4    9   12   17   21   24   26   28   32   35   39   42   45   48   54   60   65   69 
LCS_GDT     G     376     G     376     13   15   35     5   13   15   16   17   18   21   24   26   28   32   35   39   43   47   51   57   60   65   69 
LCS_GDT     H     377     H     377     13   15   35    11   13   15   16   17   18   21   24   26   28   32   36   40   44   47   52   57   62   66   71 
LCS_GDT     A     378     A     378     13   15   35    11   13   15   16   17   18   21   24   26   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     K     379     K     379     13   15   35    11   13   15   16   17   18   21   24   26   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     R     380     R     380     13   15   35    11   13   15   16   17   18   21   24   26   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     V     381     V     381     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     M     382     M     382     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     M     383     M     383     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     G     384     G     384     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     V     385     V     385     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     W     386     W     386     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     S     387     S     387     13   15   35    11   13   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     F     388     F     388     13   15   35     5    6   12   15   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     L     389     L     389      5   15   35     3    4    7   11   16   17   19   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     R     390     R     390      5   15   35     3    4    5   10   12   16   17   23   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     Q     391     Q     391      3    5   33     0    3    3    6    6    8   12   14   18   21   29   32   36   41   48   53   59   62   68   72 
LCS_GDT     F     392     F     392      4    7   31     4    4    5    6    6    9   14   18   21   23   27   32   35   41   45   49   59   62   65   71 
LCS_GDT     M     393     M     393      4    7   29     4    4    5    9   10   13   16   18   21   23   27   32   34   39   45   53   59   62   66   72 
LCS_GDT     Y     394     Y     394      4   10   27     4    4    5    8   11   13   15   18   20   22   27   31   33   39   45   53   59   62   66   72 
LCS_GDT     T     395     T     395      4   10   27     4    4    5    8   11   13   16   18   21   23   27   32   35   41   48   53   59   62   68   72 
LCS_GDT     K     396     K     396      4   10   26     3    4    5    9   11   13   16   19   22   27   30   32   35   41   45   49   55   62   66   71 
LCS_GDT     F     397     F     397      6   10   26     3    6    6    9   11   13   17   21   23   27   30   33   35   41   45   48   51   56   63   68 
LCS_GDT     V     398     V     398      6   10   26     3    6    6    9   11   13   17   21   23   27   30   33   39   41   45   49   55   62   68   72 
LCS_GDT     I     399     I     399      6   10   26     3    6    6    9   11   13   17   21   23   27   30   33   39   41   46   53   59   62   68   72 
LCS_GDT     V     400     V     400      6   10   26     3    6    6    9   11   15   16   18   21   23   29   32   35   41   49   53   59   62   68   72 
LCS_GDT     C     401     C     401      6   10   28     3    6    6    9   11   15   16   18   21   23   29   32   35   41   48   53   59   62   68   72 
LCS_GDT     D     402     D     402      6   10   28     3    6    6    9   11   14   16   18   21   23   29   32   35   41   48   53   59   62   68   72 
LCS_GDT     D     403     D     403      6   10   28     3    5    6    9   11   13   17   22   25   27   30   34   39   45   50   53   59   62   68   72 
LCS_GDT     D     404     D     404      6    7   28     3    5    6   10   11   14   17   22   25   27   30   34   39   45   50   53   59   62   68   72 
LCS_GDT     V     405     V     405      6    7   28     3    5    6   10   11   15   17   22   25   27   30   34   39   45   50   53   59   62   68   72 
LCS_GDT     N     406     N     406      6    7   28     3    5    6    6   10   15   16   16   20   26   30   33   39   45   50   53   59   62   68   72 
LCS_GDT     A     407     A     407      3    7   28     3    3    4    5    6   10   12   13   16   18   24   33   39   45   47   53   57   62   68   72 
LCS_GDT     R     408     R     408      4   13   28     3    4    8   12   14   14   14   15   17   18   24   29   32   38   46   50   55   59   64   69 
LCS_GDT     D     409     D     409     11   13   28     3    4   10   12   14   14   14   15   17   19   24   31   38   45   47   52   57   60   66   72 
LCS_GDT     W     410     W     410     11   13   28     3   10   10   12   14   14   21   23   26   28   32   36   40   45   50   53   57   62   68   72 
LCS_GDT     N     411     N     411     11   13   28     8   10   13   15   16   18   21   24   26   29   32   36   40   45   50   53   57   62   68   72 
LCS_GDT     D     412     D     412     11   13   28     8   10   10   12   14   14   14   15   26   28   32   36   40   45   50   53   57   62   68   72 
LCS_GDT     V     413     V     413     11   13   28     8   10   10   12   14   14   14   20   23   28   32   36   40   45   50   53   57   62   68   72 
LCS_GDT     I     414     I     414     11   13   28     8   10   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     W     415     W     415     11   13   28     8   12   15   16   17   18   21   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     A     416     A     416     11   13   28     8   10   10   12   14   16   19   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     I     417     I     417     11   13   28     8   10   10   12   14   14   14   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     T     418     T     418     11   13   28     8   10   10   12   14   14   19   24   26   29   32   34   40   45   50   53   59   62   68   72 
LCS_GDT     T     419     T     419     11   13   28     8   10   10   12   14   16   19   24   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     R     420     R     420      4   13   28     3    3    4    7   11   13   18   23   26   29   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     M     421     M     421      4    5   28     3    3    4    4    6   10   17   22   25   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     D     422     D     422      4    5   28     3    3    5    5    9    9   13   20   24   27   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     P     423     P     423      4    5   28     3    3    4    5    6    7   10   12   15   21   27   33   37   42   46   51   57   62   66   72 
LCS_GDT     A     424     A     424      4    5   28     3    3    4    5    6    7    9   12   15   21   28   33   37   42   46   53   57   62   68   72 
LCS_GDT     R     425     R     425      4    7   28     3    3    5    6    9    9   13   20   24   27   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     D     426     D     426      3    7   28     3    3    5    6    9    9   14   20   25   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     T     427     T     427      4    7   28     4    4    5    6    9   10   14   20   24   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     V     428     V     428      4    7   28     4    4    5    6    9    9   13   20   23   25   28   35   40   44   47   51   57   62   68   72 
LCS_GDT     L     429     L     429      4    7   28     4    4    5    6    9    9   12   19   23   28   32   36   40   45   50   53   59   62   68   72 
LCS_GDT     V     430     V     430      5    7   28     4    5    5    6    9   10   14   19   23   25   28   33   40   43   47   50   57   60   65   71 
LCS_GDT     E     431     E     431      5    7   28     3    5    5    6    7    9   12   20   23   25   28   31   36   39   44   49   52   59   62   68 
LCS_GDT     N     432     N     432      5    7   28     3    5    6    6    7    8   13   19   23   23   27   31   36   39   44   47   49   59   60   67 
LCS_GDT     T     433     T     433      5    7   27     3    5    6    6    7    8    8   12   13   14   21   28   34   37   39   43   47   49   55   58 
LCS_GDT     P     434     P     434      5    7   15     3    5    6    6    7    8    8   12   13   14   15   17   18   21   26   37   45   48   51   55 
LCS_GDT     I     435     I     435      5    7   15     3    4    6    6    7    8    8   12   13   14   15   17   18   21   26   37   41   46   53   56 
LCS_GDT     D     436     D     436      5    7   15     3    4    6    6    7    8    8   12   13   14   15   17   20   21   26   27   30   31   34   38 
LCS_GDT     Y     437     Y     437      4    7   15     3    4    6    6    7    8    8    9   10   12   16   17   20   21   26   27   30   31   34   38 
LCS_GDT     L     438     L     438      4    7   17     3    3    5    6    7    8   10   11   12   14   16   16   19   21   24   31   36   41   45   49 
LCS_GDT     D     439     D     439      4    7   18     3    3    4    6    7    8    9   12   20   22   24   28   33   37   43   49   57   62   65   71 
LCS_GDT     F     440     F     440      4    7   18     3    3    4    6    7    8   11   17   20   22   24   28   32   37   40   43   52   62   65   68 
LCS_GDT     A     441     A     441      4    7   18     3    3    4    6    7   11   12   16   20   22   24   28   32   37   43   49   57   62   65   71 
LCS_GDT     S     442     S     442      3    7   18     2    3    3    5    7    8   10   11   12   16   23   25   32   37   41   49   57   62   65   71 
LCS_GDT     P     443     P     443      4    7   18     2    3    4    5    7    8   11   16   23   25   29   34   39   42   48   53   59   62   68   72 
LCS_GDT     V     444     V     444      4    8   18     3    3    4    6   10   15   17   24   26   29   32   34   39   45   50   53   59   62   68   72 
LCS_GDT     S     445     S     445      4    8   18     3    3    4    6   10   15   19   24   26   29   32   34   39   45   50   53   59   62   68   72 
LCS_GDT     G     446     G     446      4    8   18     3    4    4    6   12   15   19   24   26   29   32   34   40   45   50   53   59   62   68   72 
LCS_GDT     L     447     L     447      4    8   18     3    4    7   11   13   16   19   24   26   29   32   35   40   45   50   53   59   62   68   72 
LCS_GDT     G     448     G     448      4    8   18     3    4    4    6   10   15   18   22   26   29   32   34   39   45   50   53   59   62   68   72 
LCS_GDT     S     449     S     449      5    8   18     3    4    5    7   10   15   16   18   21   24   29   34   39   45   50   53   59   62   68   72 
LCS_GDT     K     450     K     450      5    8   18     3    4    6    8   12   15   19   24   26   29   32   34   40   45   50   53   59   62   68   72 
LCS_GDT     M     451     M     451      5    8   18     3    4    6    8   10   15   16   18   22   27   32   34   39   42   49   53   59   62   68   72 
LCS_GDT     G     452     G     452      5    8   18     3    3    6   10   13   18   21   24   26   28   32   35   39   45   50   53   59   62   68   72 
LCS_GDT     L     453     L     453      5    6   18     3    4    5    6    8   13   16   18   23   28   32   35   39   42   45   50   57   62   68   71 
LCS_GDT     D     454     D     454      4    6   18     3    4    5    8   10   12   16   18   21   23   27   32   35   41   45   48   51   55   63   69 
LCS_GDT     A     455     A     455      4    7   18     3    3    5    7    7    9   12   13   21   26   30   33   35   41   45   48   51   55   60   64 
LCS_GDT     T     456     T     456      4    7   18     0    3    5    7    7    9   10   12   15   18   26   28   32   34   36   40   43   45   50   54 
LCS_GDT     N     457     N     457      4    7   15     3    3    5    7    7    9   10   12   14   17   26   28   32   34   36   36   39   45   48   48 
LCS_GDT     K     458     K     458      4    7   15     3    3    4    5    6    9   10   12   14   17   26   28   32   34   36   36   39   41   43   48 
LCS_GDT     W     459     W     459      4    7   15     3    3    5    7    7    9   10   12   14   16   26   28   32   34   36   36   39   40   43   48 
LCS_GDT     P     460     P     460      4    7   15     1    3    5    7    7    9   10   12   13   16   20   20   32   34   36   37   39   41   43   48 
LCS_GDT     G     461     G     461      3    7   15     0    3    5    7    7    9   10   11   12   13   17   19   26   27   30   32   36   39   43   48 
LCS_GDT     E     462     E     462      4    5   14     0    4    4    4    5    5    6    9   10   12   12   14   16   19   24   28   35   39   43   48 
LCS_GDT     T     463     T     463      4    5   11     3    4    4    4    5    5    6    7    8    8    9   12   13   22   26   31   35   42   44   48 
LCS_GDT     Q     464     Q     464      4    5   11     3    4    4    4    4    5    6    7    7    8   11   17   21   29   33   40   43   48   53   57 
LCS_GDT     R     465     R     465      4    5    8     3    4    4    4    5    5    6    7    7   11   13   13   17   22   28   34   42   49   53   59 
LCS_GDT     E     466     E     466      4    5    8     0    3    4    4    5    5    6    7    9   11   13   16   23   27   32   40   46   52   56   60 
LCS_GDT     W     467     W     467      4    4    8     0    3    4    4    4    6    8    8    8    9    9    9   13   19   24   26   28   34   45   53 
LCS_AVERAGE  LCS_A:  11.42  (   4.89    7.74   21.62 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     13     15     16     17     18     21     24     26     29     32     36     40     45     50     53     59     62     68     72 
GDT PERCENT_CA   9.17  10.83  12.50  13.33  14.17  15.00  17.50  20.00  21.67  24.17  26.67  30.00  33.33  37.50  41.67  44.17  49.17  51.67  56.67  60.00
GDT RMS_LOCAL    0.33   0.56   0.80   0.92   1.09   1.32   1.97   2.58   2.57   3.33   3.61   4.13   4.48   4.88   5.21   5.56   6.08   6.16   6.50   6.78
GDT RMS_ALL_CA  15.61  15.86  15.86  15.99  16.01  16.06  15.97  16.47  15.78  14.42  14.55  14.11  14.05  13.65  13.64  13.55  13.32  13.64  13.68  13.71

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         18.753
LGA    P     349      P     349         21.801
LGA    E     350      E     350         19.438
LGA    I     351      I     351         18.073
LGA    V     352      V     352         18.972
LGA    D     353      D     353         18.227
LGA    F     354      F     354         12.236
LGA    Y     355      Y     355         10.725
LGA    L     356      L     356          7.741
LGA    P     357      P     357          6.792
LGA    P     358      P     358          9.119
LGA    E     359      E     359          3.299
LGA    G     360      G     360          5.875
LGA    C     361      C     361          6.534
LGA    S     362      S     362          1.611
LGA    Y     363      Y     363          2.275
LGA    R     364      R     364          7.304
LGA    L     365      L     365          7.493
LGA    A     366      A     366          5.335
LGA    V     367      V     367          6.428
LGA    V     368      V     368          2.536
LGA    T     369      T     369          3.987
LGA    I     370      I     370          1.983
LGA    K     371      K     371          2.470
LGA    K     372      K     372          3.813
LGA    Q     373      Q     373          8.384
LGA    Y     374      Y     374          7.739
LGA    A     375      A     375          3.981
LGA    G     376      G     376          3.903
LGA    H     377      H     377          3.700
LGA    A     378      A     378          3.215
LGA    K     379      K     379          2.287
LGA    R     380      R     380          1.349
LGA    V     381      V     381          1.359
LGA    M     382      M     382          1.168
LGA    M     383      M     383          1.097
LGA    G     384      G     384          1.037
LGA    V     385      V     385          0.736
LGA    W     386      W     386          1.835
LGA    S     387      S     387          1.972
LGA    F     388      F     388          3.851
LGA    L     389      L     389          7.226
LGA    R     390      R     390          8.855
LGA    Q     391      Q     391         14.372
LGA    F     392      F     392         13.896
LGA    M     393      M     393         13.426
LGA    Y     394      Y     394         15.616
LGA    T     395      T     395         12.613
LGA    K     396      K     396          9.039
LGA    F     397      F     397          8.801
LGA    V     398      V     398          7.555
LGA    I     399      I     399          7.655
LGA    V     400      V     400         10.143
LGA    C     401      C     401         12.311
LGA    D     402      D     402         15.592
LGA    D     403      D     403         15.442
LGA    D     404      D     404         12.696
LGA    V     405      V     405         10.730
LGA    N     406      N     406         10.754
LGA    A     407      A     407         11.078
LGA    R     408      R     408          9.872
LGA    D     409      D     409          7.201
LGA    W     410      W     410          5.586
LGA    N     411      N     411          3.694
LGA    D     412      D     412          6.720
LGA    V     413      V     413          9.135
LGA    I     414      I     414          8.625
LGA    W     415      W     415          8.936
LGA    A     416      A     416         12.244
LGA    I     417      I     417         13.607
LGA    T     418      T     418         13.692
LGA    T     419      T     419         15.251
LGA    R     420      R     420         13.701
LGA    M     421      M     421         13.927
LGA    D     422      D     422         20.285
LGA    P     423      P     423         25.231
LGA    A     424      A     424         27.622
LGA    R     425      R     425         21.505
LGA    D     426      D     426         16.533
LGA    T     427      T     427         16.079
LGA    V     428      V     428         15.238
LGA    L     429      L     429         15.327
LGA    V     430      V     430         15.750
LGA    E     431      E     431         20.632
LGA    N     432      N     432         26.425
LGA    T     433      T     433         28.399
LGA    P     434      P     434         32.836
LGA    I     435      I     435         30.954
LGA    D     436      D     436         33.465
LGA    Y     437      Y     437         33.412
LGA    L     438      L     438         31.422
LGA    D     439      D     439         27.769
LGA    F     440      F     440         32.893
LGA    A     441      A     441         30.153
LGA    S     442      S     442         30.947
LGA    P     443      P     443         29.823
LGA    V     444      V     444         28.141
LGA    S     445      S     445         27.982
LGA    G     446      G     446         23.180
LGA    L     447      L     447         18.074
LGA    G     448      G     448         14.090
LGA    S     449      S     449         10.441
LGA    K     450      K     450          9.515
LGA    M     451      M     451          5.414
LGA    G     452      G     452          3.212
LGA    L     453      L     453          6.413
LGA    D     454      D     454          9.684
LGA    A     455      A     455          9.324
LGA    T     456      T     456         14.602
LGA    N     457      N     457         18.922
LGA    K     458      K     458         22.418
LGA    W     459      W     459         26.200
LGA    P     460      P     460         28.820
LGA    G     461      G     461         29.411
LGA    E     462      E     462         29.515
LGA    T     463      T     463         27.573
LGA    Q     464      Q     464         30.398
LGA    R     465      R     465         28.464
LGA    E     466      E     466         27.408
LGA    W     467      W     467         28.066

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     24    2.58    22.083    17.819     0.896

LGA_LOCAL      RMSD =  2.577  Number of atoms =   24  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.895  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 12.206  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.393711 * X  +   0.732810 * Y  +   0.554960 * Z  +  52.130974
  Y_new =  -0.678533 * X  +   0.175612 * Y  +  -0.713269 * Z  +  76.536125
  Z_new =  -0.620149 * X  +  -0.657381 * Y  +   0.428096 * Z  +  59.636478 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.993568    2.148025  [ DEG:   -56.9272    123.0728 ]
  Theta =   0.668932    2.472661  [ DEG:    38.3270    141.6730 ]
  Phi   =  -2.096558    1.045034  [ DEG:  -120.1239     59.8761 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS393_3-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS393_3-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   24   2.58  17.819    12.21
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS393_3-D3
PFRMAT TS
TARGET T0356
MODEL 3
PARENT N/A
ATOM    348  CA  PHE   348      66.582  56.376  61.779  1.00 25.00           C
ATOM    349  CA  PRO   349      68.374  59.383  63.227  1.00 25.00           C
ATOM    350  CA  GLU   350      66.170  61.740  61.259  1.00 25.00           C
ATOM    351  CA  ILE   351      64.657  61.217  64.742  1.00 25.00           C
ATOM    352  CA  VAL   352      61.415  59.465  63.892  1.00 25.00           C
ATOM    353  CA  ASP   353      59.625  57.458  66.560  1.00 25.00           C
ATOM    354  CA  PHE   354      56.175  58.880  67.098  1.00 25.00           C
ATOM    355  CA  TYR   355      53.199  58.761  69.456  1.00 25.00           C
ATOM    356  CA  LEU   356      50.108  58.600  67.301  1.00 25.00           C
ATOM    357  CA  PRO   357      47.863  59.676  70.129  1.00 25.00           C
ATOM    358  CA  PRO   358      44.560  61.519  70.782  1.00 25.00           C
ATOM    359  CA  GLU   359      46.289  62.868  73.930  1.00 25.00           C
ATOM    360  CA  GLY   360      48.836  65.632  74.320  1.00 25.00           C
ATOM    361  CA  CYS   361      52.391  66.232  73.266  1.00 25.00           C
ATOM    362  CA  SER   362      55.657  64.310  73.125  1.00 25.00           C
ATOM    363  CA  TYR   363      55.914  62.988  69.594  1.00 25.00           C
ATOM    364  CA  ARG   364      59.426  62.523  68.229  1.00 25.00           C
ATOM    365  CA  LEU   365      57.868  62.970  64.768  1.00 25.00           C
ATOM    366  CA  ALA   366      55.900  63.483  61.524  1.00 25.00           C
ATOM    367  CA  VAL   367      53.206  62.943  58.819  1.00 25.00           C
ATOM    368  CA  VAL   368      50.659  64.924  60.840  1.00 25.00           C
ATOM    369  CA  THR   369      49.748  66.324  57.390  1.00 25.00           C
ATOM    370  CA  ILE   370      49.209  68.783  54.540  1.00 25.00           C
ATOM    371  CA  LYS   371      47.147  70.378  51.780  1.00 25.00           C
ATOM    372  CA  LYS   372      43.380  70.921  51.325  1.00 25.00           C
ATOM    373  CA  GLN   373      41.373  67.767  50.980  1.00 25.00           C
ATOM    374  CA  TYR   374      44.619  65.905  51.488  1.00 25.00           C
ATOM    375  CA  ALA   375      46.009  65.866  47.920  1.00 25.00           C
ATOM    376  CA  GLY   376      49.019  64.329  46.122  1.00 25.00           C
ATOM    377  CA  HIS   377      51.381  66.668  48.024  1.00 25.00           C
ATOM    378  CA  ALA   378      49.729  65.685  51.336  1.00 25.00           C
ATOM    379  CA  LYS   379      50.121  61.978  50.458  1.00 25.00           C
ATOM    380  CA  ARG   380      53.816  62.541  49.626  1.00 25.00           C
ATOM    381  CA  VAL   381      54.319  64.343  52.967  1.00 25.00           C
ATOM    382  CA  MET   382      52.628  61.445  54.813  1.00 25.00           C
ATOM    383  CA  MET   383      54.891  58.940  53.005  1.00 25.00           C
ATOM    384  CA  GLY   384      57.976  60.999  53.961  1.00 25.00           C
ATOM    385  CA  VAL   385      56.821  61.081  57.612  1.00 25.00           C
ATOM    386  CA  TRP   386      56.317  57.284  57.563  1.00 25.00           C
ATOM    387  CA  SER   387      59.826  56.812  56.103  1.00 25.00           C
ATOM    388  CA  PHE   388      61.291  59.064  58.834  1.00 25.00           C
ATOM    389  CA  LEU   389      62.052  55.459  59.862  1.00 25.00           C
ATOM    390  CA  ARG   390      62.413  52.974  57.019  1.00 25.00           C
ATOM    391  CA  GLN   391      62.238  53.067  53.266  1.00 25.00           C
ATOM    392  CA  PHE   392      62.223  55.769  50.536  1.00 25.00           C
ATOM    393  CA  MET   393      60.492  58.882  49.128  1.00 25.00           C
ATOM    394  CA  TYR   394      57.286  57.024  49.930  1.00 25.00           C
ATOM    395  CA  THR   395      57.195  54.883  53.076  1.00 25.00           C
ATOM    396  CA  LYS   396      57.298  53.819  56.736  1.00 25.00           C
ATOM    397  CA  PHE   397      57.584  54.960  60.368  1.00 25.00           C
ATOM    398  CA  VAL   398      57.022  58.331  62.077  1.00 25.00           C
ATOM    399  CA  ILE   399      53.624  59.733  62.783  1.00 25.00           C
ATOM    400  CA  VAL   400      52.876  62.348  65.482  1.00 25.00           C
ATOM    401  CA  CYS   401      50.157  63.669  67.748  1.00 25.00           C
ATOM    402  CA  ASP   402      49.682  67.019  69.590  1.00 25.00           C
ATOM    403  CA  ASP   403      49.643  70.615  70.840  1.00 25.00           C
ATOM    404  CA  ASP   404      46.420  70.982  68.904  1.00 25.00           C
ATOM    405  CA  VAL   405      44.655  67.821  70.081  1.00 25.00           C
ATOM    406  CA  ASN   406      41.834  67.392  72.508  1.00 25.00           C
ATOM    407  CA  ALA   407      43.734  69.636  74.949  1.00 25.00           C
ATOM    408  CA  ARG   408      43.508  72.701  77.130  1.00 25.00           C
ATOM    409  CA  ASP   409      40.794  74.139  74.912  1.00 25.00           C
ATOM    410  CA  TRP   410      42.220  73.049  71.507  1.00 25.00           C
ATOM    411  CA  ASN   411      39.392  73.094  68.926  1.00 25.00           C
ATOM    412  CA  ASP   412      40.424  76.613  67.821  1.00 25.00           C
ATOM    413  CA  VAL   413      44.060  75.462  67.467  1.00 25.00           C
ATOM    414  CA  ILE   414      42.931  72.461  65.374  1.00 25.00           C
ATOM    415  CA  TRP   415      40.854  74.771  63.135  1.00 25.00           C
ATOM    416  CA  ALA   416      43.870  77.088  62.685  1.00 25.00           C
ATOM    417  CA  ILE   417      46.066  74.090  61.760  1.00 25.00           C
ATOM    418  CA  THR   418      43.454  72.932  59.211  1.00 25.00           C
ATOM    419  CA  THR   419      43.331  76.450  57.701  1.00 25.00           C
ATOM    420  CA  ARG   420      39.758  77.222  58.851  1.00 25.00           C
ATOM    421  CA  MET   421      37.119  74.531  58.272  1.00 25.00           C
ATOM    422  CA  ASP   422      35.234  77.472  56.691  1.00 25.00           C
ATOM    423  CA  PRO   423      37.548  79.848  54.834  1.00 25.00           C
ATOM    424  CA  ALA   424      37.109  79.233  51.057  1.00 25.00           C
ATOM    425  CA  ARG   425      36.667  75.624  52.255  1.00 25.00           C
ATOM    426  CA  ASP   426      39.131  73.305  53.852  1.00 25.00           C
ATOM    427  CA  THR   427      40.857  70.704  56.068  1.00 25.00           C
ATOM    428  CA  VAL   428      39.726  67.113  56.207  1.00 25.00           C
ATOM    429  CA  LEU   429      40.958  63.974  54.439  1.00 25.00           C
ATOM    430  CA  VAL   430      40.283  60.490  55.700  1.00 25.00           C
ATOM    431  CA  GLU   431      36.811  59.069  55.145  1.00 25.00           C
ATOM    432  CA  ASN   432      33.604  57.666  53.769  1.00 25.00           C
ATOM    433  CA  THR   433      33.386  60.567  51.363  1.00 25.00           C
ATOM    434  CA  PRO   434      33.216  60.166  47.589  1.00 25.00           C
ATOM    435  CA  ILE   435      36.807  61.392  47.752  1.00 25.00           C
ATOM    436  CA  ASP   436      39.882  62.922  46.024  1.00 25.00           C
ATOM    437  CA  TYR   437      42.472  60.358  47.072  1.00 25.00           C
ATOM    438  CA  LEU   438      45.744  58.808  48.201  1.00 25.00           C
ATOM    439  CA  ASP   439      44.278  55.309  48.584  1.00 25.00           C
ATOM    440  CA  PHE   440      43.793  55.429  44.787  1.00 25.00           C
ATOM    441  CA  ALA   441      45.467  52.255  43.429  1.00 25.00           C
ATOM    442  CA  SER   442      45.590  51.080  39.863  1.00 25.00           C
ATOM    443  CA  PRO   443      43.213  48.242  40.538  1.00 25.00           C
ATOM    444  CA  VAL   444      43.828  46.217  43.677  1.00 25.00           C
ATOM    445  CA  SER   445      43.384  44.320  46.956  1.00 25.00           C
ATOM    446  CA  GLY   446      46.052  44.171  49.645  1.00 25.00           C
ATOM    447  CA  LEU   447      47.136  47.610  50.779  1.00 25.00           C
ATOM    448  CA  GLY   448      49.146  50.554  52.149  1.00 25.00           C
ATOM    449  CA  SER   449      51.873  53.127  52.831  1.00 25.00           C
ATOM    450  CA  LYS   450      50.340  56.572  53.148  1.00 25.00           C
ATOM    451  CA  MET   451      51.231  56.507  56.843  1.00 25.00           C
ATOM    452  CA  GLY   452      49.911  59.001  59.485  1.00 25.00           C
ATOM    453  CA  LEU   453      48.579  60.405  62.792  1.00 25.00           C
ATOM    454  CA  ASP   454      45.898  60.586  65.466  1.00 25.00           C
ATOM    455  CA  ALA   455      42.677  58.725  64.580  1.00 25.00           C
ATOM    456  CA  THR   456      39.225  58.314  66.026  1.00 25.00           C
ATOM    457  CA  ASN   457      35.909  57.258  67.468  1.00 25.00           C
ATOM    458  CA  LYS   458      32.462  57.094  69.104  1.00 25.00           C
ATOM    459  CA  TRP   459      29.452  59.423  68.858  1.00 25.00           C
ATOM    460  CA  PRO   460      26.676  62.027  68.872  1.00 25.00           C
ATOM    461  CA  GLY   461      25.139  65.171  67.333  1.00 25.00           C
ATOM    462  CA  GLU   462      23.755  68.022  69.309  1.00 25.00           C
ATOM    463  CA  THR   463      22.647  71.180  67.429  1.00 25.00           C
ATOM    464  CA  GLN   464      24.260  74.071  69.235  1.00 25.00           C
ATOM    465  CA  ARG   465      21.890  76.980  68.714  1.00 25.00           C
ATOM    466  CA  GLU   466      24.343  79.744  69.289  1.00 25.00           C
ATOM    467  CA  TRP   467      25.300  82.842  71.329  1.00 25.00           C
TER
END
