
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS599_1-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS599_1-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35       422 - 456         4.93    24.17
  LCS_AVERAGE:     24.22

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       374 - 390         1.95    33.89
  LCS_AVERAGE:     10.25

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       376 - 389         0.91    32.83
  LCS_AVERAGE:      6.65

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      8   11   20     4    6    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   22   25   26 
LCS_GDT     P     349     P     349      8   12   20     4    6    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   22   25   26 
LCS_GDT     E     350     E     350      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   21   22   24 
LCS_GDT     I     351     I     351      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   21   22   24 
LCS_GDT     V     352     V     352      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   21   22   24 
LCS_GDT     D     353     D     353      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   21   22   24 
LCS_GDT     F     354     F     354      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   22   25   26 
LCS_GDT     Y     355     Y     355      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   19   19   19   19   22   25   26 
LCS_GDT     L     356     L     356      8   12   20     4    7    9    9   11   12   15   15   16   16   17   18   19   21   23   25   25   25   28   32 
LCS_GDT     P     357     P     357      8   12   24     4    6    7    9   11   12   15   15   16   16   17   18   19   21   24   25   29   34   36   40 
LCS_GDT     P     358     P     358      7   12   24     4    6    7    9   10   12   15   15   16   16   19   21   23   25   28   28   32   34   36   40 
LCS_GDT     E     359     E     359      7   12   24     3    6    7    8   10   12   15   15   16   16   17   18   20   22   24   26   29   34   35   39 
LCS_GDT     G     360     G     360      7   12   24     4    6    7    9   11   12   15   15   16   17   19   21   22   22   24   28   30   34   36   40 
LCS_GDT     C     361     C     361      6   11   24     3    5    5    7    9   11   13   14   16   17   19   21   23   25   28   28   33   35   40   41 
LCS_GDT     S     362     S     362      5   11   24     3    4    5    7    9   12   15   15   16   17   19   21   23   25   28   28   34   38   40   41 
LCS_GDT     Y     363     Y     363      5   11   24     3    4    5    7    9   11   13   14   16   17   19   21   23   25   28   28   32   34   37   41 
LCS_GDT     R     364     R     364      7   11   24     3    6    7    8    9   12   15   15   16   17   19   21   23   25   28   28   32   34   36   41 
LCS_GDT     L     365     L     365      7   11   24     3    6    7    8    9   11   13   14   16   17   19   21   23   25   28   28   32   34   36   40 
LCS_GDT     A     366     A     366      7   11   24     5    6    7    8    9   11   13   14   16   17   19   21   23   25   28   28   32   34   37   40 
LCS_GDT     V     367     V     367      7   11   24     5    6    7    8    9   11   13   14   16   17   19   21   23   25   28   28   32   34   36   40 
LCS_GDT     V     368     V     368      7   11   26     5    6    7    8    9   11   13   14   16   17   19   21   22   23   28   28   32   34   36   40 
LCS_GDT     T     369     T     369      7   11   26     5    6    7    8    9   11   12   14   16   17   19   21   23   23   26   27   32   34   36   40 
LCS_GDT     I     370     I     370      7   11   26     5    6    7    8    9   11   13   16   19   22   22   22   23   24   24   25   29   29   34   40 
LCS_GDT     K     371     K     371      7   11   26     3    6    7    8    9   15   18   20   21   22   22   22   23   24   24   25   26   29   34   36 
LCS_GDT     K     372     K     372      7   10   26     3    6    7    8    9   14   18   20   21   22   22   22   23   24   26   27   29   34   36   40 
LCS_GDT     Q     373     Q     373      4   10   26     3    3    4    5   11   14   18   20   21   22   22   22   23   24   24   25   29   29   36   40 
LCS_GDT     Y     374     Y     374      4   17   26     3    4    7   10   13   16   18   20   21   22   22   22   23   24   24   27   32   34   36   40 
LCS_GDT     A     375     A     375      4   17   26     3    4    4    6   12   16   16   20   21   22   22   22   23   25   28   28   32   34   36   40 
LCS_GDT     G     376     G     376     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   26   28   32   34   35   40 
LCS_GDT     H     377     H     377     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   28   28   32   34   36   40 
LCS_GDT     A     378     A     378     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   28   28   32   34   36   40 
LCS_GDT     K     379     K     379     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   26   28   32   34   36   40 
LCS_GDT     R     380     R     380     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   28   28   32   34   36   40 
LCS_GDT     V     381     V     381     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   28   28   32   34   36   40 
LCS_GDT     M     382     M     382     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   24   24   25   27   34   35   40 
LCS_GDT     M     383     M     383     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   24   24   25   27   29   29   39 
LCS_GDT     G     384     G     384     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   25   28   28   32   34   36   40 
LCS_GDT     V     385     V     385     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   24   24   25   26   29   29   34 
LCS_GDT     W     386     W     386     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   24   24   25   26   28   30   34 
LCS_GDT     S     387     S     387     14   17   26     8   13   13   14   15   16   18   20   21   22   22   22   23   24   27   29   30   30   32   34 
LCS_GDT     F     388     F     388     14   17   26     4   13   13   14   15   16   18   20   21   22   22   22   23   24   27   29   30   34   35   40 
LCS_GDT     L     389     L     389     14   17   26     4    4    8   14   15   16   18   20   21   22   22   22   23   24   24   25   26   29   32   34 
LCS_GDT     R     390     R     390      5   17   26     4    4    8   14   15   15   17   20   21   22   22   22   23   24   24   25   26   26   28   31 
LCS_GDT     Q     391     Q     391      4   16   26     3    3    4    5    6   13   16   20   21   22   22   22   23   24   24   25   26   26   28   30 
LCS_GDT     F     392     F     392      4    6   26     3    3    4    5    6    7    8    9   11   15   19   21   23   24   24   25   27   29   32   34 
LCS_GDT     M     393     M     393      3   11   26     3    4    4    5    8   11   11   14   17   18   19   22   23   25   27   29   30   30   32   34 
LCS_GDT     Y     394     Y     394      9   11   31     5    9    9    9    9   11   11   12   15   17   20   21   22   25   27   29   30   30   32   34 
LCS_GDT     T     395     T     395      9   11   33     5    9    9    9    9   11   11   14   15   19   21   21   24   26   27   29   31   31   33   34 
LCS_GDT     K     396     K     396      9   11   33     5    9    9    9   12   14   17   20   25   25   26   28   30   30   32   33   35   35   35   35 
LCS_GDT     F     397     F     397      9   11   33     5    9    9    9   12   15   23   25   26   28   28   29   31   34   34   34   35   37   39   40 
LCS_GDT     V     398     V     398      9   11   33     4    9    9    9   12   15   23   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     I     399     I     399      9   11   33     4    9    9   11   16   19   23   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     V     400     V     400      9   11   33     4    9    9   12   16   19   24   25   26   28   28   29   31   34   34   34   35   36   38   40 
LCS_GDT     C     401     C     401      9   11   33     3    9    9   10   13   19   24   25   26   28   28   29   31   34   34   34   35   35   35   37 
LCS_GDT     D     402     D     402      9   11   33     3    9    9   10   15   19   24   25   26   28   28   29   31   34   34   34   35   35   35   37 
LCS_GDT     D     403     D     403      5   11   33     3    5    7   10   14   19   24   25   26   28   28   29   31   34   34   34   35   35   35   37 
LCS_GDT     D     404     D     404      7   11   33     5    7    7   10   12   15   24   25   26   28   28   29   31   34   34   34   35   35   35   37 
LCS_GDT     V     405     V     405      7   11   33     5    7    7   10   12   19   24   25   26   28   28   29   31   34   34   34   35   35   35   37 
LCS_GDT     N     406     N     406      7   16   33     4    7    7   11   15   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     A     407     A     407      7   16   33     5    7    7    9   12   16   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     R     408     R     408      9   16   33     5    7    7   12   14   18   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     D     409     D     409     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     W     410     W     410     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     N     411     N     411     12   16   33     8   11   12   13   16   19   23   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     D     412     D     412     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     V     413     V     413     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     I     414     I     414     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     W     415     W     415     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     A     416     A     416     12   16   33     8   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     I     417     I     417     12   16   33     4   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   36   38   40 
LCS_GDT     T     418     T     418     12   16   33     4   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   36   38   40 
LCS_GDT     T     419     T     419     12   16   33     4   11   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   36   38   40 
LCS_GDT     R     420     R     420     12   16   33     4    7   12   13   16   19   24   25   26   28   28   29   31   34   34   34   35   35   36   38 
LCS_GDT     M     421     M     421      8   16   33     3    6   10   13   16   19   24   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     D     422     D     422      6   15   35     4    6    9   12   16   19   24   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     P     423     P     423      5   15   35     3    5    5    7   13   19   24   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     A     424     A     424      5    9   35     3    5    5    8   11   17   24   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     R     425     R     425      5   10   35     3    5    7   13   15   15   21   25   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     D     426     D     426      8   11   35     3    6    9   10   13   15   17   21   26   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     T     427     T     427      8   11   35     3    6    9   10   11   14   17   19   23   27   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     V     428     V     428      8   11   35     3    6    9   10   11   14   17   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     L     429     L     429      8   11   35     3    6    9   10   11   14   17   18   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     V     430     V     430      8   11   35     3    6    9   10   11   14   17   18   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     E     431     E     431      8   11   35     4    6    9   10   11   14   17   17   19   21   27   29   31   32   33   35   38   38   40   41 
LCS_GDT     N     432     N     432      8   11   35     4    6    9   10   11   14   17   17   19   22   27   29   31   32   34   35   38   38   40   41 
LCS_GDT     T     433     T     433      8   11   35     4    5    9   10   11   14   17   18   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     P     434     P     434      8   11   35     4    5    9   10   11   14   17   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     I     435     I     435      6   11   35     3    5    8   10   11   12   17   18   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     D     436     D     436      6   11   35     2    4    6   10   11   12   13   18   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     Y     437     Y     437      3   11   35     3    3    5    7    9   11   12   14   15   22   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     L     438     L     438      5   11   35     4    5    6    9   11   12   14   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     D     439     D     439      5   10   35     4    5    9   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     F     440     F     440      5   10   35     4    5    7   12   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     A     441     A     441      5   10   35     4    5    6    7   11   15   15   16   18   21   25   27   31   32   34   35   38   38   40   41 
LCS_GDT     S     442     S     442      5   10   35     4    5    6    7    9   11   12   16   18   18   22   23   27   31   33   35   38   38   40   41 
LCS_GDT     P     443     P     443      4   13   35     4    4    5    6    9   12   13   15   18   18   22   23   28   32   33   35   38   38   40   41 
LCS_GDT     V     444     V     444      8   13   35     4    5    8   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     S     445     S     445      8   13   35     3    5    9   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     G     446     G     446      8   13   35     3    5   10   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     L     447     L     447      8   13   35     3    5   10   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     G     448     G     448      8   13   35     3    5   10   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     S     449     S     449      8   13   35     3    7   10   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     K     450     K     450      8   13   35     4    7   10   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     M     451     M     451      8   13   35     4    7   10   13   15   15   17   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     G     452     G     452      8   13   35     4    7   10   13   15   18   19   20   25   26   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     L     453     L     453      8   13   35     4    7   10   13   15   15   17   22   25   28   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     D     454     D     454      8   13   35     3    7   10   13   15   15   17   19   22   26   28   29   31   34   34   35   38   38   40   41 
LCS_GDT     A     455     A     455      8   13   35     3    7   10   13   15   15   16   19   22   26   28   29   31   32   34   35   38   38   40   41 
LCS_GDT     T     456     T     456      3    8   35     3    6    8    9   10   14   17   17   19   21   24   28   30   31   34   35   38   38   40   41 
LCS_GDT     N     457     N     457      4    5   26     3    3    5    5    8    9    9   10   15   18   21   23   24   27   30   31   33   35   37   40 
LCS_GDT     K     458     K     458      4    5   26     3    3    5    5    8    9    9   10   13   17   19   23   24   27   30   31   33   35   37   40 
LCS_GDT     W     459     W     459      4    5   22     0    3    5    5    5    9    9   12   16   19   21   23   24   27   30   31   33   35   37   40 
LCS_GDT     P     460     P     460      4    5   20     3    3    5    5    8    9    9   12   14   18   20   23   24   27   30   31   33   35   36   40 
LCS_GDT     G     461     G     461      4    6   20     3    3    5    5    7   10   11   12   13   14   17   21   24   27   30   31   33   35   36   37 
LCS_GDT     E     462     E     462      4    6   20     3    4    4    4    6    6    9   11   12   13   15   17   23   26   30   31   33   35   36   40 
LCS_GDT     T     463     T     463      4    6   20     3    4    4    4    6    6    9   11   12   14   16   20   23   26   30   31   33   35   36   40 
LCS_GDT     Q     464     Q     464      4    6   19     3    4    4    4    6    6    9   11   12   14   16   19   22   26   29   30   32   35   36   38 
LCS_GDT     R     465     R     465      4    6   16     3    4    4    5    6    7    9   11   13   14   16   19   22   24   26   28   32   33   36   40 
LCS_GDT     E     466     E     466      3    6   16     0    3    4    5    6    7    9   11   12   13   16   20   24   27   30   31   33   35   36   40 
LCS_GDT     W     467     W     467      3    5   16     2    3    4    5    5    7    8    9    9   13   16   18   24   27   30   31   33   35   36   40 
LCS_AVERAGE  LCS_A:  13.71  (   6.65   10.25   24.22 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8     13     13     14     16     19     24     25     26     28     28     29     31     34     34     35     38     38     40     41 
GDT PERCENT_CA   6.67  10.83  10.83  11.67  13.33  15.83  20.00  20.83  21.67  23.33  23.33  24.17  25.83  28.33  28.33  29.17  31.67  31.67  33.33  34.17
GDT RMS_LOCAL    0.35   0.57   0.57   0.91   1.67   2.21   2.66   2.70   2.81   3.07   3.07   3.22   3.59   4.05   4.05   4.85   5.27   5.27   5.64   5.81
GDT RMS_ALL_CA  27.33  32.17  32.17  32.83  24.34  25.38  26.61  25.87  26.02  26.52  26.52  26.62  25.16  25.43  25.43  24.36  24.29  24.29  24.40  24.38

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         29.290
LGA    P     349      P     349         31.775
LGA    E     350      E     350         31.571
LGA    I     351      I     351         32.392
LGA    V     352      V     352         34.398
LGA    D     353      D     353         36.082
LGA    F     354      F     354         35.007
LGA    Y     355      Y     355         36.707
LGA    L     356      L     356         36.521
LGA    P     357      P     357         39.117
LGA    P     358      P     358         42.312
LGA    E     359      E     359         40.919
LGA    G     360      G     360         36.072
LGA    C     361      C     361         38.688
LGA    S     362      S     362         36.651
LGA    Y     363      Y     363         29.479
LGA    R     364      R     364         29.801
LGA    L     365      L     365         31.964
LGA    A     366      A     366         30.483
LGA    V     367      V     367         32.646
LGA    V     368      V     368         31.263
LGA    T     369      T     369         33.066
LGA    I     370      I     370         32.548
LGA    K     371      K     371         33.212
LGA    K     372      K     372         33.085
LGA    Q     373      Q     373         30.773
LGA    Y     374      Y     374         26.242
LGA    A     375      A     375         26.199
LGA    G     376      G     376         25.755
LGA    H     377      H     377         24.851
LGA    A     378      A     378         26.471
LGA    K     379      K     379         25.700
LGA    R     380      R     380         24.200
LGA    V     381      V     381         25.344
LGA    M     382      M     382         26.499
LGA    M     383      M     383         25.626
LGA    G     384      G     384         24.844
LGA    V     385      V     385         27.474
LGA    W     386      W     386         29.230
LGA    S     387      S     387         28.929
LGA    F     388      F     388         28.683
LGA    L     389      L     389         32.245
LGA    R     390      R     390         36.298
LGA    Q     391      Q     391         35.773
LGA    F     392      F     392         29.392
LGA    M     393      M     393         24.594
LGA    Y     394      Y     394         21.488
LGA    T     395      T     395         17.648
LGA    K     396      K     396         11.178
LGA    F     397      F     397          7.029
LGA    V     398      V     398          6.508
LGA    I     399      I     399          3.570
LGA    V     400      V     400          2.020
LGA    C     401      C     401          2.818
LGA    D     402      D     402          1.728
LGA    D     403      D     403          2.342
LGA    D     404      D     404          3.615
LGA    V     405      V     405          2.982
LGA    N     406      N     406          2.155
LGA    A     407      A     407          3.952
LGA    R     408      R     408          3.455
LGA    D     409      D     409          0.867
LGA    W     410      W     410          2.547
LGA    N     411      N     411          3.893
LGA    D     412      D     412          2.960
LGA    V     413      V     413          2.390
LGA    I     414      I     414          2.713
LGA    W     415      W     415          2.562
LGA    A     416      A     416          2.037
LGA    I     417      I     417          2.034
LGA    T     418      T     418          1.842
LGA    T     419      T     419          2.062
LGA    R     420      R     420          2.243
LGA    M     421      M     421          2.644
LGA    D     422      D     422          2.126
LGA    P     423      P     423          3.670
LGA    A     424      A     424          4.815
LGA    R     425      R     425          5.986
LGA    D     426      D     426          6.819
LGA    T     427      T     427          6.798
LGA    V     428      V     428         11.017
LGA    L     429      L     429         16.515
LGA    V     430      V     430         19.338
LGA    E     431      E     431         25.830
LGA    N     432      N     432         29.303
LGA    T     433      T     433         23.531
LGA    P     434      P     434         25.788
LGA    I     435      I     435         25.952
LGA    D     436      D     436         29.144
LGA    Y     437      Y     437         35.183
LGA    L     438      L     438         39.653
LGA    D     439      D     439         39.541
LGA    F     440      F     440         45.619
LGA    A     441      A     441         44.630
LGA    S     442      S     442         43.951
LGA    P     443      P     443         46.297
LGA    V     444      V     444         45.176
LGA    S     445      S     445         45.298
LGA    G     446      G     446         39.340
LGA    L     447      L     447         36.948
LGA    G     448      G     448         32.196
LGA    S     449      S     449         26.543
LGA    K     450      K     450         19.978
LGA    M     451      M     451         14.699
LGA    G     452      G     452          7.692
LGA    L     453      L     453          6.572
LGA    D     454      D     454          6.631
LGA    A     455      A     455         12.972
LGA    T     456      T     456         14.429
LGA    N     457      N     457         15.833
LGA    K     458      K     458         17.078
LGA    W     459      W     459         20.025
LGA    P     460      P     460         24.536
LGA    G     461      G     461         23.901
LGA    E     462      E     462         24.206
LGA    T     463      T     463         25.121
LGA    Q     464      Q     464         28.933
LGA    R     465      R     465         29.969
LGA    E     466      E     466         33.141
LGA    W     467      W     467         31.385

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     25    2.70    18.125    16.481     0.892

LGA_LOCAL      RMSD =  2.702  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 26.142  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 19.219  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.104089 * X  +   0.524220 * Y  +  -0.845198 * Z  +  72.509941
  Y_new =   0.364767 * X  +  -0.810717 * Y  +  -0.457911 * Z  +  61.507576
  Z_new =  -0.925262 * X  +  -0.260637 * Y  +  -0.275605 * Z  +  31.586674 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.384100    0.757492  [ DEG:  -136.5989     43.4011 ]
  Theta =   1.181727    1.959866  [ DEG:    67.7080    112.2920 ]
  Phi   =   1.292826   -1.848766  [ DEG:    74.0735   -105.9265 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_1-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_1-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   25   2.70  16.481    19.22
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_1-D3
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM    348  CA  PHE   348      63.882  67.904  23.316  1.00  0.00              
ATOM    349  CA  PRO   349      66.061  70.084  21.034  1.00  0.00              
ATOM    350  CA  GLU   350      65.972  73.431  22.721  1.00  0.00              
ATOM    351  CA  ILE   351      67.139  72.710  25.952  1.00  0.00              
ATOM    352  CA  VAL   352      69.619  74.595  27.817  1.00  0.00              
ATOM    353  CA  ASP   353      71.526  72.920  30.353  1.00  0.00              
ATOM    354  CA  PHE   354      70.646  69.246  31.586  1.00  0.00              
ATOM    355  CA  TYR   355      72.477  68.137  34.836  1.00  0.00              
ATOM    356  CA  LEU   356      71.368  64.746  36.287  1.00  0.00              
ATOM    357  CA  PRO   357      73.004  63.154  38.849  1.00  0.00              
ATOM    358  CA  PRO   358      73.045  59.234  37.779  1.00  0.00              
ATOM    359  CA  GLU   359      71.532  58.088  41.134  1.00  0.00              
ATOM    360  CA  GLY   360      68.642  59.866  41.160  1.00  0.00              
ATOM    361  CA  CYS   361      67.075  59.983  37.993  1.00  0.00              
ATOM    362  CA  SER   362      66.529  56.362  38.140  1.00  0.00              
ATOM    363  CA  TYR   363      64.979  55.933  41.642  1.00  0.00              
ATOM    364  CA  ARG   364      62.193  57.995  40.367  1.00  0.00              
ATOM    365  CA  LEU   365      61.014  56.593  36.847  1.00  0.00              
ATOM    366  CA  ALA   366      58.009  58.269  35.232  1.00  0.00              
ATOM    367  CA  VAL   367      56.183  55.861  32.684  1.00  0.00              
ATOM    368  CA  VAL   368      53.723  57.347  30.334  1.00  0.00              
ATOM    369  CA  THR   369      50.862  54.982  28.694  1.00  0.00              
ATOM    370  CA  ILE   370      49.511  55.577  25.673  1.00  0.00              
ATOM    371  CA  LYS   371      46.774  53.112  24.678  1.00  0.00              
ATOM    372  CA  LYS   372      47.860  52.038  21.516  1.00  0.00              
ATOM    373  CA  GLN   373      51.033  51.557  21.803  1.00  0.00              
ATOM    374  CA  TYR   374      51.198  49.830  25.079  1.00  0.00              
ATOM    375  CA  ALA   375      48.417  47.386  24.885  1.00  0.00              
ATOM    376  CA  GLY   376      50.209  45.238  27.131  1.00  0.00              
ATOM    377  CA  HIS   377      50.810  47.237  30.175  1.00  0.00              
ATOM    378  CA  ALA   378      47.453  48.872  29.466  1.00  0.00              
ATOM    379  CA  LYS   379      45.597  45.549  30.283  1.00  0.00              
ATOM    380  CA  ARG   380      48.110  45.230  33.133  1.00  0.00              
ATOM    381  CA  VAL   381      46.543  48.053  34.636  1.00  0.00              
ATOM    382  CA  MET   382      43.002  47.699  33.945  1.00  0.00              
ATOM    383  CA  MET   383      43.398  44.417  36.017  1.00  0.00              
ATOM    384  CA  GLY   384      45.036  46.458  38.986  1.00  0.00              
ATOM    385  CA  VAL   385      41.881  48.444  39.157  1.00  0.00              
ATOM    386  CA  TRP   386      39.584  45.423  39.331  1.00  0.00              
ATOM    387  CA  SER   387      41.200  43.520  41.535  1.00  0.00              
ATOM    388  CA  PHE   388      42.067  46.077  43.692  1.00  0.00              
ATOM    389  CA  LEU   389      39.578  48.924  43.383  1.00  0.00              
ATOM    390  CA  ARG   390      36.059  47.903  43.607  1.00  0.00              
ATOM    391  CA  GLN   391      37.095  45.287  46.140  1.00  0.00              
ATOM    392  CA  PHE   392      37.557  46.194  50.022  1.00  0.00              
ATOM    393  CA  MET   393      41.046  47.495  50.173  1.00  0.00              
ATOM    394  CA  TYR   394      41.945  49.333  53.136  1.00  0.00              
ATOM    395  CA  THR   395      43.330  52.664  53.392  1.00  0.00              
ATOM    396  CA  LYS   396      44.786  52.118  57.014  1.00  0.00              
ATOM    397  CA  PHE   397      46.489  55.290  58.130  1.00  0.00              
ATOM    398  CA  VAL   398      45.034  59.095  56.986  1.00  0.00              
ATOM    399  CA  ILE   399      46.663  61.833  57.116  1.00  0.00              
ATOM    400  CA  VAL   400      45.135  65.104  56.817  1.00  0.00              
ATOM    401  CA  CYS   401      47.070  67.949  56.107  1.00  0.00              
ATOM    402  CA  ASP   402      45.657  71.351  55.907  1.00  0.00              
ATOM    403  CA  ASP   403      47.273  75.128  56.087  1.00  0.00              
ATOM    404  CA  ASP   404      45.047  76.215  57.928  1.00  0.00              
ATOM    405  CA  VAL   405      44.789  74.316  60.901  1.00  0.00              
ATOM    406  CA  ASN   406      43.788  75.446  64.811  1.00  0.00              
ATOM    407  CA  ALA   407      46.893  73.869  66.529  1.00  0.00              
ATOM    408  CA  ARG   408      45.202  73.528  70.068  1.00  0.00              
ATOM    409  CA  ASP   409      42.493  71.737  68.535  1.00  0.00              
ATOM    410  CA  TRP   410      43.228  68.482  67.111  1.00  0.00              
ATOM    411  CA  ASN   411      40.409  66.294  68.363  1.00  0.00              
ATOM    412  CA  ASP   412      37.997  68.543  66.560  1.00  0.00              
ATOM    413  CA  VAL   413      39.716  68.821  63.426  1.00  0.00              
ATOM    414  CA  ILE   414      40.186  64.722  63.371  1.00  0.00              
ATOM    415  CA  TRP   415      36.295  64.756  63.804  1.00  0.00              
ATOM    416  CA  ALA   416      36.257  66.367  60.883  1.00  0.00              
ATOM    417  CA  ILE   417      38.305  63.716  59.123  1.00  0.00              
ATOM    418  CA  THR   418      35.908  61.347  60.589  1.00  0.00              
ATOM    419  CA  THR   419      32.826  62.883  58.860  1.00  0.00              
ATOM    420  CA  ARG   420      34.301  62.989  55.893  1.00  0.00              
ATOM    421  CA  MET   421      35.108  59.272  54.948  1.00  0.00              
ATOM    422  CA  ASP   422      34.359  55.865  55.759  1.00  0.00              
ATOM    423  CA  PRO   423      34.470  54.782  59.464  1.00  0.00              
ATOM    424  CA  ALA   424      37.456  52.797  59.751  1.00  0.00              
ATOM    425  CA  ARG   425      40.032  54.575  57.944  1.00  0.00              
ATOM    426  CA  ASP   426      42.409  55.942  60.180  1.00  0.00              
ATOM    427  CA  THR   427      41.952  59.782  60.449  1.00  0.00              
ATOM    428  CA  VAL   428      44.478  62.124  61.690  1.00  0.00              
ATOM    429  CA  LEU   429      44.780  66.067  61.672  1.00  0.00              
ATOM    430  CA  VAL   430      47.500  67.543  61.645  1.00  0.00              
ATOM    431  CA  GLU   431      47.628  71.076  63.744  1.00  0.00              
ATOM    432  CA  ASN   432      49.950  73.552  62.431  1.00  0.00              
ATOM    433  CA  THR   433      51.293  71.114  59.599  1.00  0.00              
ATOM    434  CA  PRO   434      52.834  73.080  56.720  1.00  0.00              
ATOM    435  CA  ILE   435      52.251  71.890  53.846  1.00  0.00              
ATOM    436  CA  ASP   436      53.719  71.945  50.610  1.00  0.00              
ATOM    437  CA  TYR   437      53.050  71.770  47.116  1.00  0.00              
ATOM    438  CA  LEU   438      53.671  73.564  44.153  1.00  0.00              
ATOM    439  CA  ASP   439      52.186  72.505  41.148  1.00  0.00              
ATOM    440  CA  PHE   440      53.275  73.483  37.895  1.00  0.00              
ATOM    441  CA  ALA   441      50.737  72.526  35.880  1.00  0.00              
ATOM    442  CA  SER   442      48.469  75.162  37.193  1.00  0.00              
ATOM    443  CA  PRO   443      49.499  77.946  39.064  1.00  0.00              
ATOM    444  CA  VAL   444      47.880  77.386  42.349  1.00  0.00              
ATOM    445  CA  SER   445      50.955  79.370  43.556  1.00  0.00              
ATOM    446  CA  GLY   446      50.708  77.957  46.912  1.00  0.00              
ATOM    447  CA  LEU   447      47.914  76.732  48.818  1.00  0.00              
ATOM    448  CA  GLY   448      47.125  73.098  47.939  1.00  0.00              
ATOM    449  CA  SER   449      45.398  71.088  50.366  1.00  0.00              
ATOM    450  CA  LYS   450      47.779  68.730  51.209  1.00  0.00              
ATOM    451  CA  MET   451      46.661  65.575  52.102  1.00  0.00              
ATOM    452  CA  GLY   452      48.912  61.986  52.853  1.00  0.00              
ATOM    453  CA  LEU   453      47.201  59.162  52.229  1.00  0.00              
ATOM    454  CA  ASP   454      48.483  56.433  54.489  1.00  0.00              
ATOM    455  CA  ALA   455      47.998  52.588  54.753  1.00  0.00              
ATOM    456  CA  THR   456      44.725  51.823  52.194  1.00  0.00              
ATOM    457  CA  ASN   457      47.269  53.734  49.620  1.00  0.00              
ATOM    458  CA  LYS   458      50.617  52.499  50.737  1.00  0.00              
ATOM    459  CA  TRP   459      48.909  49.181  50.618  1.00  0.00              
ATOM    460  CA  PRO   460      52.004  46.688  50.726  1.00  0.00              
ATOM    461  CA  GLY   461      53.957  44.066  49.214  1.00  0.00              
ATOM    462  CA  GLU   462      53.190  41.264  50.504  1.00  0.00              
ATOM    463  CA  THR   463      49.702  40.243  49.056  1.00  0.00              
ATOM    464  CA  GLN   464      48.947  37.359  47.025  1.00  0.00              
ATOM    465  CA  ARG   465      48.164  38.832  43.700  1.00  0.00              
ATOM    466  CA  GLU   466      45.149  37.395  42.539  1.00  0.00              
ATOM    467  CA  TRP   467      42.590  39.012  41.062  1.00  0.00              
TER                                                                             
END
