
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS599_2-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS599_2-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47       356 - 402         4.85    28.54
  LONGEST_CONTINUOUS_SEGMENT:    47       357 - 403         4.87    28.72
  LCS_AVERAGE:     28.76

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       374 - 391         1.88    29.62
  LCS_AVERAGE:     10.31

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       376 - 389         0.99    28.52
  LCS_AVERAGE:      6.63

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      9   13   19     3    8    9   10   13   16   16   19   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     P     349     P     349      9   13   19     3    8    9   10   13   16   16   18   18   21   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     E     350     E     350      9   13   19     4    8    9   11   13   16   16   18   21   22   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     I     351     I     351      9   13   19     3    8    9   11   13   16   16   18   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     V     352     V     352      9   13   19     4    8    9   11   13   16   16   18   18   19   23   27   29   30   31   33   34   37   38   39 
LCS_GDT     D     353     D     353      9   13   19     4    8    9   11   13   16   16   18   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     F     354     F     354      9   13   19     4    8    9   11   13   16   16   19   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     Y     355     Y     355      9   13   19     4    8    9   11   13   16   16   19   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     L     356     L     356      9   13   47     3    6    9   11   13   16   16   19   21   24   26   27   29   30   39   42   46   49   49   50 
LCS_GDT     P     357     P     357      8   13   47     3    6    8   11   13   16   16   19   21   24   27   31   38   44   46   47   49   49   49   50 
LCS_GDT     P     358     P     358      7   13   47     4    6    8   11   17   23   26   30   33   36   38   40   44   44   46   47   49   51   53   55 
LCS_GDT     E     359     E     359      7   13   47     4    6    9   12   16   21   25   26   31   33   36   40   44   44   46   47   49   49   49   50 
LCS_GDT     G     360     G     360      7   13   47     4    6    7   11   15   22   25   29   33   36   38   40   44   44   46   47   49   51   53   55 
LCS_GDT     C     361     C     361      6   13   47     4    5   10   13   21   22   26   30   33   36   38   40   44   45   47   49   51   54   56   57 
LCS_GDT     S     362     S     362      8   13   47     3    4    7   13   21   23   26   30   33   36   38   40   44   44   47   49   51   53   56   57 
LCS_GDT     Y     363     Y     363      9   13   47     7   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     R     364     R     364      9   13   47     7   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     L     365     L     365      9   13   47     6   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     A     366     A     366      9   13   47     6   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     V     367     V     367      9   13   47     7   13   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     V     368     V     368      9   13   47     6   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     T     369     T     369      9   13   47     7   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     I     370     I     370      9   13   47     3    8   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     K     371     K     371      9   13   47     3    5   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     K     372     K     372      4   13   47     3    5    7   17   19   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     Q     373     Q     373      4   13   47     3    5    7   12   19   22   25   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     Y     374     Y     374      4   18   47     2    4    8   13   18   20   24   28   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     A     375     A     375      4   18   47     3    4    5   13   18   21   24   28   33   36   38   40   44   44   47   49   52   54   56   57 
LCS_GDT     G     376     G     376     14   18   47     5   13   14   17   18   21   25   28   31   34   36   40   44   45   47   49   52   54   56   57 
LCS_GDT     H     377     H     377     14   18   47     7   13   14   17   18   21   25   28   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     A     378     A     378     14   18   47     6   13   14   17   19   22   25   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     K     379     K     379     14   18   47     5   13   14   17   19   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     R     380     R     380     14   18   47     7   13   15   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     V     381     V     381     14   18   47     7   13   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     M     382     M     382     14   18   47     7   13   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     M     383     M     383     14   18   47     7   13   14   18   20   23   26   30   33   36   38   40   44   44   46   49   52   54   56   57 
LCS_GDT     G     384     G     384     14   18   47     5   13   14   17   20   22   26   30   33   36   38   40   44   44   46   49   52   53   56   57 
LCS_GDT     V     385     V     385     14   18   47     5   13   14   17   20   22   26   30   33   36   38   40   44   44   46   49   52   54   56   57 
LCS_GDT     W     386     W     386     14   18   47     7   13   14   17   20   22   26   30   33   36   38   40   44   44   46   49   52   52   56   57 
LCS_GDT     S     387     S     387     14   18   47     7   13   14   17   20   22   26   29   33   36   38   40   44   44   46   47   49   49   51   55 
LCS_GDT     F     388     F     388     14   18   47     4    6   14   17   18   21   24   27   31   35   38   40   44   44   46   47   49   49   50   54 
LCS_GDT     L     389     L     389     14   18   47     4    6   14   17   18   19   24   26   29   33   36   40   44   44   46   47   49   49   50   53 
LCS_GDT     R     390     R     390      8   18   47     4    6   10   17   17   19   24   26   29   33   36   40   44   44   46   47   49   49   49   50 
LCS_GDT     Q     391     Q     391      4   18   47     3    3    4    6   11   19   22   24   26   29   32   36   38   41   46   47   49   49   49   51 
LCS_GDT     F     392     F     392      4    6   47     4    4    5    6    7    9   15   25   28   33   36   39   44   44   46   47   49   52   54   55 
LCS_GDT     M     393     M     393      4    6   47     4    4    5    6    7    9    9   13   17   22   27   31   37   42   46   49   52   52   54   56 
LCS_GDT     Y     394     Y     394      4    9   47     4    5    5    9   10   14   17   21   31   35   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     T     395     T     395      4   11   47     4    5    6   11   17   22   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     K     396     K     396      7   11   47     4    5   13   15   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     F     397     F     397      7   11   47     7   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     V     398     V     398      7   11   47     7   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     I     399     I     399      7   11   47     7   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     V     400     V     400      7   11   47     5   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     C     401     C     401      7   11   47     3   12   16   18   21   23   26   30   33   36   38   40   44   45   47   49   52   54   56   57 
LCS_GDT     D     402     D     402      7   11   47     4    5   13   16   21   22   26   28   31   33   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     D     403     D     403      5   11   47     4    5    7   10   14   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     D     404     D     404      5   11   42     4    5    7   10   11   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     V     405     V     405      5   11   34     4    5    7   10   16   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     N     406     N     406      5   16   34     4    5    7   12   17   19   24   26   30   32   33   36   41   44   47   49   52   54   56   57 
LCS_GDT     A     407     A     407      5   16   34     4    5    7   12   14   18   24   25   27   30   33   35   36   40   44   48   51   54   56   57 
LCS_GDT     R     408     R     408     12   16   34     4    6   12   14   14   16   18   25   27   29   31   35   36   39   42   44   47   48   52   54 
LCS_GDT     D     409     D     409     12   16   34     4   11   12   14   17   19   24   26   30   32   33   36   38   44   46   49   52   54   56   57 
LCS_GDT     W     410     W     410     12   16   34     4   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     N     411     N     411     12   16   34     6   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     D     412     D     412     12   16   34     6   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     V     413     V     413     12   16   34     5   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     I     414     I     414     12   16   34     6   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     W     415     W     415     12   16   34     5   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     A     416     A     416     12   16   34     6   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     I     417     I     417     12   16   34     5   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     T     418     T     418     12   16   34     6   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     T     419     T     419     12   16   34     6   11   12   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     R     420     R     420     12   16   34     3    9   11   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     M     421     M     421      6   16   34     5    5   10   14   17   19   24   27   30   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     D     422     D     422      6   16   34     5    5    9   13   17   19   24   26   30   32   34   36   42   44   47   49   51   54   56   57 
LCS_GDT     P     423     P     423      6   15   34     5    5    6    7   13   19   24   26   28   32   36   39   43   45   47   49   52   54   56   57 
LCS_GDT     A     424     A     424      6   12   34     5    5    6    8   11   18   24   25   27   32   33   35   36   42   44   48   51   54   56   57 
LCS_GDT     R     425     R     425      6   12   34     5    5    6    7   10   17   24   25   27   29   31   35   36   37   41   44   46   50   53   56 
LCS_GDT     D     426     D     426      8   12   34     4    6    9   10   11   12   15   25   27   29   31   33   36   37   40   42   46   50   53   56 
LCS_GDT     T     427     T     427      8   12   34     4    6    9   10   11   13   18   25   31   33   36   39   40   42   44   48   51   54   56   57 
LCS_GDT     V     428     V     428      8   12   34     4    6    9   10   11   13   17   26   31   36   38   40   44   44   46   47   49   49   49   50 
LCS_GDT     L     429     L     429      8   12   33     4    6    9   10   16   21   24   26   29   33   36   40   44   44   46   47   49   49   49   50 
LCS_GDT     V     430     V     430      8   12   19     3    6    9   10   11   13   14   19   21   24   31   33   35   37   39   41   41   44   48   48 
LCS_GDT     E     431     E     431      8   12   19     4    6    9   10   11   12   14   19   21   24   26   27   29   30   31   33   35   37   40   40 
LCS_GDT     N     432     N     432      8   12   19     3    6    9   10   11   12   14   19   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     T     433     T     433      8   12   19     3    6    9   10   11   13   14   19   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     P     434     P     434      8   12   19     3    6    9    9   11   12   14   19   21   24   26   27   29   30   31   33   35   37   38   39 
LCS_GDT     I     435     I     435      4   12   19     4    4    9   10   11   13   14   19   21   24   26   27   30   32   34   37   38   39   42   44 
LCS_GDT     D     436     D     436      4   12   19     4    4    9   10   11   12   14   19   22   24   26   29   33   33   35   37   38   41   43   46 
LCS_GDT     Y     437     Y     437      4   11   19     4    4    5    7   10   13   14   19   21   24   26   29   33   33   35   37   38   41   43   46 
LCS_GDT     L     438     L     438      4    6   19     4   11   12   14   14   16   16   19   21   24   26   29   33   33   35   37   38   41   43   46 
LCS_GDT     D     439     D     439      4    5   20     3    4    4    4    6    7    7    9   12   15   18   26   29   33   35   37   38   41   43   46 
LCS_GDT     F     440     F     440      4    5   24     3    4    4    5    6    7    7    9   12   15   18   26   29   32   35   37   38   41   43   46 
LCS_GDT     A     441     A     441      4    5   24     3    4    4    5    6    7    7    8    9    9   10   11   23   23   25   25   25   26   43   46 
LCS_GDT     S     442     S     442      4    5   24     3    4    4    5    5    6    7    8    9    9   14   21   23   23   25   28   33   36   43   46 
LCS_GDT     P     443     P     443      5    5   24     3    4    5    5    7   12   14   16   17   18   19   21   23   23   25   25   25   36   43   46 
LCS_GDT     V     444     V     444      5   10   24     3    4    5    8   10   13   14   16   17   18   19   21   23   26   28   34   36   40   43   46 
LCS_GDT     S     445     S     445      5   10   24     3    4    5    8   10   13   14   16   17   18   19   21   23   23   25   25   25   36   39   46 
LCS_GDT     G     446     G     446      5   10   24     3    4    5    7   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     L     447     L     447      5   10   24     3    4    5    8    8   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     G     448     G     448      8   10   24     3    6    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     S     449     S     449      8   10   24     3    6    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     K     450     K     450      8   10   24     3    6    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     M     451     M     451      8   10   24     3    6    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     G     452     G     452      8   10   24     4    6    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     L     453     L     453      8   10   24     4    6    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     D     454     D     454      8   10   24     4    5    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     A     455     A     455      8   10   24     4    5    8    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     T     456     T     456      6   10   24     4    6    6    8   10   13   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     N     457     N     457      6    6   24     4    6    6    6    7    8   10   10   16   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     K     458     K     458      6    6   24     4    6    6    6    8   12   14   16   17   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     W     459     W     459      6    6   24     4    6    6    6    7    8   10   10   11   13   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     P     460     P     460      6    6   24     4    6    6    6    7    7    8   10   11   13   17   21   23   23   25   25   25   26   27   28 
LCS_GDT     G     461     G     461      6    6   24     3    6    6    6    7    8   10   16   17   18   19   20   21   23   25   25   25   26   27   28 
LCS_GDT     E     462     E     462      4    6   24     3    4    4    5    5    6   11   16   17   18   19   20   21   23   25   25   25   26   27   28 
LCS_GDT     T     463     T     463      4    6   24     3    4    4    5    5   10   11   16   16   18   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     Q     464     Q     464      4    6   24     3    4    4    5    7    8   10   10   13   16   19   21   23   23   25   25   25   26   27   28 
LCS_GDT     R     465     R     465      3    6   23     3    3    3    4    6    8   10   10   11   13   13   13   16   17   24   25   25   26   27   28 
LCS_GDT     E     466     E     466      3    6   14     3    3    3    5    6    8   10   10   11   13   13   13   13   14   16   19   22   23   25   26 
LCS_GDT     W     467     W     467      3    6   14     3    3    3    5    5    6   10   10   11   13   13   13   13   14   14   19   19   21   25   26 
LCS_AVERAGE  LCS_A:  15.23  (   6.63   10.31   28.76 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      7     13     16     18     21     23     26     30     33     36     38     40     44     45     47     49     52     54     56     57 
GDT PERCENT_CA   5.83  10.83  13.33  15.00  17.50  19.17  21.67  25.00  27.50  30.00  31.67  33.33  36.67  37.50  39.17  40.83  43.33  45.00  46.67  47.50
GDT RMS_LOCAL    0.32   0.56   0.92   1.11   1.39   1.78   2.00   2.49   2.90   3.16   3.34   3.55   4.10   4.45   4.60   4.81   5.48   5.52   5.72   5.86
GDT RMS_ALL_CA  29.00  28.34  29.18  29.23  29.01  29.11  29.12  29.09  28.93  28.83  28.72  28.66  28.41  27.30  27.07  27.06  27.98  27.20  27.47  27.63

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         34.347
LGA    P     349      P     349         39.634
LGA    E     350      E     350         39.158
LGA    I     351      I     351         34.466
LGA    V     352      V     352         35.678
LGA    D     353      D     353         29.752
LGA    F     354      F     354         24.174
LGA    Y     355      Y     355         18.697
LGA    L     356      L     356         12.151
LGA    P     357      P     357          8.507
LGA    P     358      P     358          2.633
LGA    E     359      E     359          6.571
LGA    G     360      G     360          4.574
LGA    C     361      C     361          3.775
LGA    S     362      S     362          3.979
LGA    Y     363      Y     363          1.525
LGA    R     364      R     364          1.358
LGA    L     365      L     365          0.544
LGA    A     366      A     366          1.066
LGA    V     367      V     367          1.315
LGA    V     368      V     368          1.871
LGA    T     369      T     369          2.162
LGA    I     370      I     370          3.491
LGA    K     371      K     371          2.870
LGA    K     372      K     372          3.115
LGA    Q     373      Q     373          3.765
LGA    Y     374      Y     374          5.498
LGA    A     375      A     375          5.555
LGA    G     376      G     376          6.863
LGA    H     377      H     377          5.374
LGA    A     378      A     378          3.844
LGA    K     379      K     379          3.607
LGA    R     380      R     380          1.776
LGA    V     381      V     381          0.876
LGA    M     382      M     382          1.531
LGA    M     383      M     383          1.976
LGA    G     384      G     384          2.046
LGA    V     385      V     385          3.158
LGA    W     386      W     386          3.875
LGA    S     387      S     387          4.460
LGA    F     388      F     388          6.513
LGA    L     389      L     389          9.714
LGA    R     390      R     390         11.634
LGA    Q     391      Q     391         13.589
LGA    F     392      F     392          9.073
LGA    M     393      M     393          9.523
LGA    Y     394      Y     394          5.590
LGA    T     395      T     395          3.736
LGA    K     396      K     396          3.546
LGA    F     397      F     397          1.769
LGA    V     398      V     398          1.060
LGA    I     399      I     399          1.504
LGA    V     400      V     400          2.165
LGA    C     401      C     401          3.025
LGA    D     402      D     402          5.696
LGA    D     403      D     403          9.829
LGA    D     404      D     404         13.184
LGA    V     405      V     405         15.567
LGA    N     406      N     406         21.425
LGA    A     407      A     407         21.400
LGA    R     408      R     408         27.964
LGA    D     409      D     409         25.543
LGA    W     410      W     410         20.432
LGA    N     411      N     411         23.363
LGA    D     412      D     412         22.875
LGA    V     413      V     413         17.126
LGA    I     414      I     414         17.078
LGA    W     415      W     415         21.902
LGA    A     416      A     416         18.435
LGA    I     417      I     417         14.949
LGA    T     418      T     418         19.390
LGA    T     419      T     419         22.489
LGA    R     420      R     420         19.856
LGA    M     421      M     421         18.683
LGA    D     422      D     422         20.117
LGA    P     423      P     423         16.564
LGA    A     424      A     424         16.050
LGA    R     425      R     425         16.194
LGA    D     426      D     426         12.225
LGA    T     427      T     427          6.089
LGA    V     428      V     428          5.517
LGA    L     429      L     429          9.536
LGA    V     430      V     430         15.999
LGA    E     431      E     431         22.056
LGA    N     432      N     432         28.539
LGA    T     433      T     433         26.628
LGA    P     434      P     434         30.981
LGA    I     435      I     435         28.994
LGA    D     436      D     436         32.474
LGA    Y     437      Y     437         35.768
LGA    L     438      L     438         35.887
LGA    D     439      D     439         33.803
LGA    F     440      F     440         35.811
LGA    A     441      A     441         37.218
LGA    S     442      S     442         39.279
LGA    P     443      P     443         44.091
LGA    V     444      V     444         45.116
LGA    S     445      S     445         47.076
LGA    G     446      G     446         47.356
LGA    L     447      L     447         47.340
LGA    G     448      G     448         47.904
LGA    S     449      S     449         46.795
LGA    K     450      K     450         45.232
LGA    M     451      M     451         45.297
LGA    G     452      G     452         45.239
LGA    L     453      L     453         46.499
LGA    D     454      D     454         45.542
LGA    A     455      A     455         46.736
LGA    T     456      T     456         49.517
LGA    N     457      N     457         52.301
LGA    K     458      K     458         55.716
LGA    W     459      W     459         54.862
LGA    P     460      P     460         59.314
LGA    G     461      G     461         58.841
LGA    E     462      E     462         56.970
LGA    T     463      T     463         62.392
LGA    Q     464      Q     464         65.862
LGA    R     465      R     465         62.142
LGA    E     466      E     466         60.338
LGA    W     467      W     467         53.381

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     30    2.49    22.917    20.279     1.159

LGA_LOCAL      RMSD =  2.489  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 28.853  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 21.732  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.479466 * X  +   0.868126 * Y  +  -0.128333 * Z  +  58.460476
  Y_new =   0.380465 * X  +  -0.073857 * Y  +   0.921841 * Z  +  77.567169
  Z_new =   0.790796 * X  +  -0.490818 * Y  +  -0.365704 * Z  +  60.949421 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.211148    0.930445  [ DEG:  -126.6894     53.3106 ]
  Theta =  -0.912109   -2.229484  [ DEG:   -52.2600   -127.7400 ]
  Phi   =   0.670777   -2.470816  [ DEG:    38.4327   -141.5673 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_2-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_2-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   30   2.49  20.279    21.73
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_2-D3
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM    348  CA  PHE   348      37.899  51.423  73.477  1.00  0.00              
ATOM    349  CA  PRO   349      34.839  50.236  75.234  1.00  0.00              
ATOM    350  CA  GLU   350      36.848  48.269  78.163  1.00  0.00              
ATOM    351  CA  ILE   351      39.153  50.698  78.854  1.00  0.00              
ATOM    352  CA  VAL   352      39.433  52.225  82.422  1.00  0.00              
ATOM    353  CA  ASP   353      42.449  54.927  82.410  1.00  0.00              
ATOM    354  CA  PHE   354      44.774  55.786  79.847  1.00  0.00              
ATOM    355  CA  TYR   355      47.407  58.756  80.580  1.00  0.00              
ATOM    356  CA  LEU   356      49.142  60.712  78.218  1.00  0.00              
ATOM    357  CA  PRO   357      52.025  63.037  78.907  1.00  0.00              
ATOM    358  CA  PRO   358      52.090  65.887  76.624  1.00  0.00              
ATOM    359  CA  GLU   359      55.170  65.525  75.006  1.00  0.00              
ATOM    360  CA  GLY   360      54.483  61.817  74.483  1.00  0.00              
ATOM    361  CA  CYS   361      51.440  62.233  72.617  1.00  0.00              
ATOM    362  CA  SER   362      53.085  64.490  69.900  1.00  0.00              
ATOM    363  CA  TYR   363      56.091  62.263  69.308  1.00  0.00              
ATOM    364  CA  ARG   364      54.186  59.235  68.712  1.00  0.00              
ATOM    365  CA  LEU   365      51.138  60.612  66.748  1.00  0.00              
ATOM    366  CA  ALA   366      52.011  62.905  63.680  1.00  0.00              
ATOM    367  CA  VAL   367      49.403  65.176  61.822  1.00  0.00              
ATOM    368  CA  VAL   368      49.845  65.776  58.581  1.00  0.00              
ATOM    369  CA  THR   369      47.283  68.508  56.731  1.00  0.00              
ATOM    370  CA  ILE   370      46.884  68.227  53.489  1.00  0.00              
ATOM    371  CA  LYS   371      45.516  71.107  51.947  1.00  0.00              
ATOM    372  CA  LYS   372      43.611  71.002  48.742  1.00  0.00              
ATOM    373  CA  GLN   373      45.037  73.340  47.023  1.00  0.00              
ATOM    374  CA  TYR   374      48.302  71.384  47.108  1.00  0.00              
ATOM    375  CA  ALA   375      47.317  68.326  46.799  1.00  0.00              
ATOM    376  CA  GLY   376      50.596  66.714  45.231  1.00  0.00              
ATOM    377  CA  HIS   377      52.606  67.815  48.074  1.00  0.00              
ATOM    378  CA  ALA   378      49.909  65.990  50.300  1.00  0.00              
ATOM    379  CA  LYS   379      50.201  62.861  49.283  1.00  0.00              
ATOM    380  CA  ARG   380      54.214  62.745  49.521  1.00  0.00              
ATOM    381  CA  VAL   381      53.841  63.660  52.795  1.00  0.00              
ATOM    382  CA  MET   382      51.966  60.739  53.812  1.00  0.00              
ATOM    383  CA  MET   383      54.317  58.426  52.166  1.00  0.00              
ATOM    384  CA  GLY   384      57.612  59.819  53.522  1.00  0.00              
ATOM    385  CA  VAL   385      55.945  58.823  56.947  1.00  0.00              
ATOM    386  CA  TRP   386      55.080  56.011  56.468  1.00  0.00              
ATOM    387  CA  SER   387      58.086  55.093  55.591  1.00  0.00              
ATOM    388  CA  PHE   388      60.764  55.771  58.116  1.00  0.00              
ATOM    389  CA  LEU   389      58.650  54.287  61.095  1.00  0.00              
ATOM    390  CA  ARG   390      57.621  50.789  60.556  1.00  0.00              
ATOM    391  CA  GLN   391      57.580  48.667  63.843  1.00  0.00              
ATOM    392  CA  PHE   392      58.794  51.482  66.247  1.00  0.00              
ATOM    393  CA  MET   393      58.130  51.158  69.865  1.00  0.00              
ATOM    394  CA  TYR   394      55.717  54.252  70.035  1.00  0.00              
ATOM    395  CA  THR   395      53.999  54.044  66.874  1.00  0.00              
ATOM    396  CA  LYS   396      54.506  57.421  65.875  1.00  0.00              
ATOM    397  CA  PHE   397      51.550  57.244  63.398  1.00  0.00              
ATOM    398  CA  VAL   398      50.466  59.400  61.097  1.00  0.00              
ATOM    399  CA  ILE   399      47.510  61.068  60.136  1.00  0.00              
ATOM    400  CA  VAL   400      46.436  62.305  57.197  1.00  0.00              
ATOM    401  CA  CYS   401      44.022  64.601  56.647  1.00  0.00              
ATOM    402  CA  ASP   402      42.811  65.756  53.001  1.00  0.00              
ATOM    403  CA  ASP   403      39.631  67.246  52.327  1.00  0.00              
ATOM    404  CA  ASP   404      38.765  65.394  49.261  1.00  0.00              
ATOM    405  CA  VAL   405      38.154  61.980  50.620  1.00  0.00              
ATOM    406  CA  ASN   406      35.182  60.673  49.497  1.00  0.00              
ATOM    407  CA  ALA   407      33.691  58.554  52.358  1.00  0.00              
ATOM    408  CA  ARG   408      31.964  55.866  50.324  1.00  0.00              
ATOM    409  CA  ASP   409      33.158  53.730  53.402  1.00  0.00              
ATOM    410  CA  TRP   410      35.998  54.106  55.290  1.00  0.00              
ATOM    411  CA  ASN   411      37.265  50.735  54.747  1.00  0.00              
ATOM    412  CA  ASP   412      37.737  52.444  51.194  1.00  0.00              
ATOM    413  CA  VAL   413      40.328  55.082  52.387  1.00  0.00              
ATOM    414  CA  ILE   414      42.270  52.604  54.421  1.00  0.00              
ATOM    415  CA  TRP   415      42.940  50.546  50.987  1.00  0.00              
ATOM    416  CA  ALA   416      44.116  52.872  49.368  1.00  0.00              
ATOM    417  CA  ILE   417      46.756  54.558  51.569  1.00  0.00              
ATOM    418  CA  THR   418      47.704  51.030  52.674  1.00  0.00              
ATOM    419  CA  THR   419      47.928  50.464  48.825  1.00  0.00              
ATOM    420  CA  ARG   420      50.836  53.325  48.540  1.00  0.00              
ATOM    421  CA  MET   421      52.843  52.035  51.352  1.00  0.00              
ATOM    422  CA  ASP   422      54.561  50.016  53.955  1.00  0.00              
ATOM    423  CA  PRO   423      52.432  47.743  55.524  1.00  0.00              
ATOM    424  CA  ALA   424      53.271  48.288  58.843  1.00  0.00              
ATOM    425  CA  ARG   425      53.281  52.178  58.866  1.00  0.00              
ATOM    426  CA  ASP   426      50.064  53.583  61.041  1.00  0.00              
ATOM    427  CA  THR   427      48.375  55.967  58.721  1.00  0.00              
ATOM    428  CA  VAL   428      44.938  56.939  59.152  1.00  0.00              
ATOM    429  CA  LEU   429      43.087  58.785  56.580  1.00  0.00              
ATOM    430  CA  VAL   430      40.491  61.033  57.294  1.00  0.00              
ATOM    431  CA  GLU   431      37.620  62.020  54.865  1.00  0.00              
ATOM    432  CA  ASN   432      35.101  64.174  56.671  1.00  0.00              
ATOM    433  CA  THR   433      36.972  65.301  59.340  1.00  0.00              
ATOM    434  CA  PRO   434      36.924  69.298  59.777  1.00  0.00              
ATOM    435  CA  ILE   435      38.606  70.429  63.169  1.00  0.00              
ATOM    436  CA  ASP   436      37.614  73.394  64.165  1.00  0.00              
ATOM    437  CA  TYR   437      39.536  75.400  66.716  1.00  0.00              
ATOM    438  CA  LEU   438      37.249  76.133  69.500  1.00  0.00              
ATOM    439  CA  ASP   439      38.904  78.089  72.596  1.00  0.00              
ATOM    440  CA  PHE   440      37.383  77.406  75.584  1.00  0.00              
ATOM    441  CA  ALA   441      36.722  80.811  77.097  1.00  0.00              
ATOM    442  CA  SER   442      38.501  80.342  80.152  1.00  0.00              
ATOM    443  CA  PRO   443      41.499  82.773  80.220  1.00  0.00              
ATOM    444  CA  VAL   444      43.811  82.118  82.871  1.00  0.00              
ATOM    445  CA  SER   445      42.577  84.479  85.573  1.00  0.00              
ATOM    446  CA  GLY   446      45.232  86.051  86.982  1.00  0.00              
ATOM    447  CA  LEU   447      48.002  86.854  84.340  1.00  0.00              
ATOM    448  CA  GLY   448      50.408  89.201  85.641  1.00  0.00              
ATOM    449  CA  SER   449      53.376  89.727  83.941  1.00  0.00              
ATOM    450  CA  LYS   450      56.531  90.522  84.553  1.00  0.00              
ATOM    451  CA  MET   451      58.032  92.356  82.096  1.00  0.00              
ATOM    452  CA  GLY   452      61.911  92.835  81.725  1.00  0.00              
ATOM    453  CA  LEU   453      63.375  95.010  79.742  1.00  0.00              
ATOM    454  CA  ASP   454      66.572  94.594  77.497  1.00  0.00              
ATOM    455  CA  ALA   455      68.157  96.795  75.631  1.00  0.00              
ATOM    456  CA  THR   456      68.965  99.894  77.474  1.00  0.00              
ATOM    457  CA  ASN   457      69.823  97.796  80.735  1.00  0.00              
ATOM    458  CA  LYS   458      72.881  95.739  79.864  1.00  0.00              
ATOM    459  CA  TRP   459      71.691  92.432  80.510  1.00  0.00              
ATOM    460  CA  PRO   460      73.961  89.890  81.374  1.00  0.00              
ATOM    461  CA  GLY   461      75.621  89.442  77.808  1.00  0.00              
ATOM    462  CA  GLU   462      78.118  86.481  77.954  1.00  0.00              
ATOM    463  CA  THR   463      79.058  87.123  81.456  1.00  0.00              
ATOM    464  CA  GLN   464      76.806  87.432  84.018  1.00  0.00              
ATOM    465  CA  ARG   465      74.259  84.755  83.700  1.00  0.00              
ATOM    466  CA  GLU   466      71.389  86.720  84.796  1.00  0.00              
ATOM    467  CA  TRP   467      68.497  87.365  82.500  1.00  0.00              
TER                                                                             
END
