
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS599_3-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS599_3-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33       396 - 428         4.87    21.06
  LCS_AVERAGE:     21.22

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18       408 - 425         1.97    22.55
  LONGEST_CONTINUOUS_SEGMENT:    18       409 - 426         1.85    22.55
  LCS_AVERAGE:     10.26

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       407 - 420         0.83    25.66
  LCS_AVERAGE:      6.83

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348     12   15   20     4   10   12   13   14   14   15   18   20   21   21   22   23   25   27   29   33   35   39   42 
LCS_GDT     P     349     P     349     12   15   20     4   10   12   13   14   14   15   18   20   21   21   22   23   25   27   29   33   35   39   41 
LCS_GDT     E     350     E     350     12   15   20     4    8   12   13   14   14   15   18   20   21   21   22   23   25   26   26   28   34   37   38 
LCS_GDT     I     351     I     351     12   15   20     4   10   12   13   14   14   15   18   20   21   21   22   23   25   27   29   33   35   39   42 
LCS_GDT     V     352     V     352     12   15   20     5   10   12   13   14   14   15   18   20   21   21   22   23   25   27   29   33   36   40   48 
LCS_GDT     D     353     D     353     12   15   20     5   10   12   13   14   14   15   18   20   21   21   22   23   25   27   29   38   42   46   48 
LCS_GDT     F     354     F     354     12   15   24     4   10   12   13   14   14   15   18   20   21   21   22   23   27   37   39   40   44   46   48 
LCS_GDT     Y     355     Y     355     12   15   24     4   10   12   13   14   14   15   18   20   21   21   25   31   36   38   39   41   44   46   48 
LCS_GDT     L     356     L     356     12   15   24     5   10   12   13   14   14   15   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     P     357     P     357     12   15   24     5   10   12   13   14   14   15   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     P     358     P     358     12   15   24     3    8   12   13   14   14   15   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     E     359     E     359     12   15   24     5   10   12   13   14   14   15   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     G     360     G     360      9   15   24     3    6   10   13   14   14   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     C     361     C     361      8   15   24     4    6    8   11   14   14   15   18   20   21   25   29   33   36   38   39   41   44   46   48 
LCS_GDT     S     362     S     362      4   15   24     4    4    4    5    9   12   13   18   20   21   23   26   29   34   38   39   41   44   46   48 
LCS_GDT     Y     363     Y     363      4   10   24     4    4    4    5    7   11   13   14   17   18   23   24   28   32   34   36   41   44   46   48 
LCS_GDT     R     364     R     364      8   10   24     4    7    9   10   11   12   15   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     L     365     L     365      8   10   24     4    7    9   10   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     A     366     A     366      8   10   24     4    7    9   10   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     V     367     V     367      8   10   27     4    7    9   10   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     V     368     V     368      8   10   27     4    7    9   10   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     T     369     T     369      8   10   27     4    7    9   10   14   15   17   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     I     370     I     370      8   10   27     4    7    9   10   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     K     371     K     371      8   10   27     4    7    9    9   11   12   13   16   17   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     K     372     K     372      4    9   27     3    3    4    7    9   11   15   18   19   21   23   28   33   36   38   39   41   44   46   48 
LCS_GDT     Q     373     Q     373      4    7   27     3    3    4    6    8   11   15   17   19   21   23   28   33   36   38   39   41   44   46   48 
LCS_GDT     Y     374     Y     374      4    7   27     4    4    4    6    8   11   15   18   19   21   23   28   33   36   38   39   41   44   46   48 
LCS_GDT     A     375     A     375      4   16   27     4    4    4    5   10   14   16   18   20   21   23   26   29   32   34   36   41   44   46   48 
LCS_GDT     G     376     G     376     13   17   27     4    9   12   14   14   16   17   18   20   21   23   26   29   32   34   36   40   44   46   47 
LCS_GDT     H     377     H     377     13   17   27     4    9   12   14   14   16   17   18   20   21   25   28   33   36   38   39   41   44   46   48 
LCS_GDT     A     378     A     378     13   17   27     4    9   12   14   14   16   17   18   20   21   22   24   29   32   34   37   40   44   46   47 
LCS_GDT     K     379     K     379     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   24   25   28   29   34   36   40 
LCS_GDT     R     380     R     380     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   24   25   28   30   37   40   42 
LCS_GDT     V     381     V     381     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   24   28   30   33   37   40   42 
LCS_GDT     M     382     M     382     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   24   24   25   29   30   38   42 
LCS_GDT     M     383     M     383     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   24   24   25   29   35   38   42 
LCS_GDT     G     384     G     384     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   25   28   30   33   35   38   42 
LCS_GDT     V     385     V     385     13   17   27     5    8   12   14   14   16   17   18   20   21   22   23   24   24   24   30   32   35   38   42 
LCS_GDT     W     386     W     386     13   17   27     5    8   12   14   14   16   17   18   20   21   22   23   24   24   24   26   29   35   37   40 
LCS_GDT     S     387     S     387     13   17   27     5    9   12   14   14   16   17   18   20   21   22   23   24   24   24   26   32   35   37   40 
LCS_GDT     F     388     F     388     13   17   27     4    6   11   14   14   16   17   18   20   21   22   23   24   24   26   28   32   35   37   40 
LCS_GDT     L     389     L     389      7   17   27     4    6   11   14   14   16   17   18   20   21   22   23   24   24   26   28   32   34   37   40 
LCS_GDT     R     390     R     390      6   17   27     3    5    7    9   14   16   17   18   20   21   22   23   24   24   26   28   32   35   37   40 
LCS_GDT     Q     391     Q     391      6   17   27     3    5    7    9   10   16   17   18   20   21   22   23   24   24   26   28   32   34   35   40 
LCS_GDT     F     392     F     392      6   17   27     0    3    7    9   14   16   17   18   20   21   21   23   24   24   26   28   32   35   37   40 
LCS_GDT     M     393     M     393      5    7   27     4    5    5    6    6    8   11   15   16   19   20   21   24   27   30   32   34   38   41   43 
LCS_GDT     Y     394     Y     394      5   10   24     4    5    5    6    9   12   12   13   14   16   18   20   24   27   30   31   34   38   40   43 
LCS_GDT     T     395     T     395      5   10   24     4    5    5    8   10   12   12   15   16   19   20   21   24   27   30   32   35   38   41   43 
LCS_GDT     K     396     K     396      6   10   33     4    6    7    8   10   12   13   16   19   23   24   25   26   30   32   36   39   41   42   44 
LCS_GDT     F     397     F     397      6   10   33     4    6    7    8   10   12   13   16   18   21   24   25   29   33   35   37   41   44   46   47 
LCS_GDT     V     398     V     398      6   10   33     4    6    9   10   11   12   15   22   23   26   30   32   35   36   38   39   41   44   46   48 
LCS_GDT     I     399     I     399      6   10   33     4    6    7    8   10   12   15   22   23   28   30   33   35   36   38   39   41   44   46   48 
LCS_GDT     V     400     V     400      6   10   33     4    7    8   12   17   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     C     401     C     401      6   10   33     4    7    8   12   17   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     D     402     D     402      5   10   33     3    4    6   13   17   21   24   26   27   30   31   33   35   36   37   38   39   39   41   42 
LCS_GDT     D     403     D     403      4   10   33     3    3    6   12   17   21   24   26   27   30   31   33   35   36   37   38   39   39   41   44 
LCS_GDT     D     404     D     404      5   10   33     3    5    6    6   10   15   21   22   26   28   30   33   35   36   37   38   39   39   40   42 
LCS_GDT     V     405     V     405      5    7   33     3    5    6    6   15   19   24   26   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     N     406     N     406      5   17   33     3    5   10   13   18   21   24   26   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     A     407     A     407     14   17   33     3    9   13   14   15   18   21   23   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     R     408     R     408     14   18   33     3    7   12   14   15   18   21   23   27   30   31   32   34   36   37   38   39   40   45   47 
LCS_GDT     D     409     D     409     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     W     410     W     410     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     N     411     N     411     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     D     412     D     412     14   18   33     8   12   13   14   18   20   24   26   27   30   31   33   35   36   37   38   39   40   45   47 
LCS_GDT     V     413     V     413     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     I     414     I     414     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     W     415     W     415     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     A     416     A     416     14   18   33     8   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     I     417     I     417     14   18   33     6   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     T     418     T     418     14   18   33     4   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     T     419     T     419     14   18   33     4   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     R     420     R     420     14   18   33     3   12   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     M     421     M     421     13   18   33     3    7   13   14   18   21   24   26   27   30   31   33   35   36   37   38   39   41   46   48 
LCS_GDT     D     422     D     422      6   18   33     3    7   10   13   18   21   24   26   27   30   31   33   35   36   38   39   41   44   46   48 
LCS_GDT     P     423     P     423      6   18   33     3    5    9   13   18   21   24   26   27   30   31   33   35   36   38   39   41   44   46   48 
LCS_GDT     A     424     A     424      6   18   33     3    5   10   13   18   21   24   26   27   30   31   33   35   36   38   39   41   44   46   48 
LCS_GDT     R     425     R     425      6   18   33     3    5   10   13   18   21   24   26   27   30   31   33   35   36   38   39   41   44   46   48 
LCS_GDT     D     426     D     426      8   18   33     5    7    9    9   17   20   24   24   27   30   31   33   35   36   38   39   41   44   46   48 
LCS_GDT     T     427     T     427      8   10   33     5    7    9    9   11   15   20   22   27   30   31   33   35   36   38   39   41   44   46   48 
LCS_GDT     V     428     V     428      8   10   33     4    7    9    9   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     L     429     L     429      8   10   32     5    7    9    9   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     V     430     V     430      8   10   26     5    7    9    9   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     E     431     E     431      8   10   19     5    7    9    9   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     N     432     N     432      8   10   19     3    7    9    9   11   13   16   18   20   21   25   29   33   36   38   39   41   44   46   48 
LCS_GDT     T     433     T     433      8   10   19     3    7    9    9   11   13   16   18   20   21   24   28   33   36   38   39   41   44   46   48 
LCS_GDT     P     434     P     434      4   10   19     3    4    5    8   11   13   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     I     435     I     435      4   10   19     3    4    5    8   10   12   16   18   20   21   26   29   33   36   38   39   41   44   46   48 
LCS_GDT     D     436     D     436      4   10   19     1    4    4    7   11   13   14   15   19   20   26   29   31   35   38   39   41   44   46   48 
LCS_GDT     Y     437     Y     437      4    7   19     0    3    4    5   11   13   14   15   19   20   22   23   28   31   34   34   39   40   45   47 
LCS_GDT     L     438     L     438      6    7   19     0    4    6    6    7   12   14   15   19   20   23   26   28   33   35   37   39   41   45   47 
LCS_GDT     D     439     D     439      6    7   19     3    4    6    6    6    8   11   14   19   20   24   26   29   33   35   37   39   41   45   47 
LCS_GDT     F     440     F     440      6    7   19     3    4    6    6    8    9   10   14   15   19   24   25   28   32   35   37   39   41   45   47 
LCS_GDT     A     441     A     441      6    7   19     3    4    6    6    6    6    7    9   12   15   19   21   28   29   31   35   37   41   42   44 
LCS_GDT     S     442     S     442      6    7   15     3    4    6    6    6    6    7   10   15   18   24   26   28   31   34   37   39   41   45   47 
LCS_GDT     P     443     P     443      6    7   15     3    4    9   10   12   16   17   21   22   23   24   26   30   32   35   37   39   41   45   47 
LCS_GDT     V     444     V     444      4    7   15     3    4    5    8   11   13   16   21   22   23   27   33   33   35   37   38   39   41   45   47 
LCS_GDT     S     445     S     445      4    5   15     3    4    4    4    5    9   12   15   18   23   27   33   33   36   37   38   39   41   45   47 
LCS_GDT     G     446     G     446      4    7   20     3    4    4    8   12   15   21   23   27   29   30   33   35   36   37   38   39   41   42   46 
LCS_GDT     L     447     L     447      4    9   20     3    4    4    6   18   20   24   26   27   30   31   33   35   36   37   38   39   41   42   46 
LCS_GDT     G     448     G     448      8    9   20     3    5    8   11   18   20   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     S     449     S     449      8    9   20     3    7    8   12   18   20   24   26   27   30   31   33   35   36   37   38   39   41   45   47 
LCS_GDT     K     450     K     450      8    9   20     5    7    8   11   18   19   24   26   27   30   31   33   35   36   37   38   39   44   46   47 
LCS_GDT     M     451     M     451      8    9   20     5    7    8    8   11   13   14   18   23   28   30   33   35   36   37   38   40   44   46   48 
LCS_GDT     G     452     G     452      8    9   20     5    7    8    8    9   10   12   14   23   28   30   33   35   36   38   39   41   44   46   48 
LCS_GDT     L     453     L     453      8    9   20     5    7    8    8    9   10   12   14   16   16   16   17   18   19   27   31   39   42   46   48 
LCS_GDT     D     454     D     454      8    9   20     5    7    8    8    9   10   11   14   16   16   16   17   18   19   27   32   36   39   46   48 
LCS_GDT     A     455     A     455      8    9   20     5    7    8    8    9   10   12   14   16   16   16   17   18   19   20   24   26   28   35   38 
LCS_GDT     T     456     T     456      3    8   20     3    3    5    6    9   10   12   14   16   16   16   17   18   19   20   24   26   27   35   38 
LCS_GDT     N     457     N     457      3    8   20     3    3    4    5    7    8    9    9   10   14   16   17   19   20   22   24   26   27   35   38 
LCS_GDT     K     458     K     458      3    8   20     3    3    5    6    9   10   12   14   16   16   16   17   19   20   22   24   26   27   31   32 
LCS_GDT     W     459     W     459      3    8   20     3    4    5    6    9   10   12   14   16   16   16   17   19   20   22   24   26   27   31   32 
LCS_GDT     P     460     P     460      3    8   20     3    4    5    6    9   10   12   14   16   16   16   17   19   20   22   24   26   31   34   39 
LCS_GDT     G     461     G     461      3    8   20     3    4    4    5    9   10   12   14   16   16   16   17   19   20   22   24   26   27   34   39 
LCS_GDT     E     462     E     462      3    7   20     3    3    3    5    6    7    7   11   16   16   16   17   19   20   22   24   26   27   31   32 
LCS_GDT     T     463     T     463      3    7   20     3    4    4    5    7   10   12   14   16   16   16   17   19   20   22   24   26   29   34   39 
LCS_GDT     Q     464     Q     464      3    7   20     3    3    4    5    7    7    8   11   13   14   16   17   20   22   25   27   36   38   38   39 
LCS_GDT     R     465     R     465      3    7   20     3    3    3    5    7    7    8    9   10   12   12   13   14   17   17   21   23   29   34   37 
LCS_GDT     E     466     E     466      3    5   16     3    3    4    4    6    7    7    8   10   12   12   13   16   19   20   23   29   31   35   38 
LCS_GDT     W     467     W     467      3    5   15     3    3    4    4    6    7    7    9    9   10   11   13   19   22   23   29   32   42   46   48 
LCS_AVERAGE  LCS_A:  12.77  (   6.83   10.26   21.22 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8     12     13     14     18     21     24     26     27     30     31     33     35     36     38     39     41     44     46     48 
GDT PERCENT_CA   6.67  10.00  10.83  11.67  15.00  17.50  20.00  21.67  22.50  25.00  25.83  27.50  29.17  30.00  31.67  32.50  34.17  36.67  38.33  40.00
GDT RMS_LOCAL    0.25   0.57   0.69   0.83   1.76   2.04   2.24   2.47   2.57   2.94   3.08   3.40   3.66   3.76   5.14   5.31   5.57   5.91   6.15   6.62
GDT RMS_ALL_CA  25.63  25.42  25.49  25.66  22.20  21.63  21.80  21.38  21.38  21.53  21.64  21.13  21.02  21.31  20.46  20.40  20.42  20.30  20.22  20.16

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         27.394
LGA    P     349      P     349         32.056
LGA    E     350      E     350         32.126
LGA    I     351      I     351         30.353
LGA    V     352      V     352         33.901
LGA    D     353      D     353         32.493
LGA    F     354      F     354         27.892
LGA    Y     355      Y     355         28.997
LGA    L     356      L     356         26.647
LGA    P     357      P     357         28.849
LGA    P     358      P     358         29.456
LGA    E     359      E     359         29.797
LGA    G     360      G     360         26.942
LGA    C     361      C     361         26.629
LGA    S     362      S     362         23.211
LGA    Y     363      Y     363         19.378
LGA    R     364      R     364         17.509
LGA    L     365      L     365         16.643
LGA    A     366      A     366         14.720
LGA    V     367      V     367         18.329
LGA    V     368      V     368         19.653
LGA    T     369      T     369         25.023
LGA    I     370      I     370         27.518
LGA    K     371      K     371         33.052
LGA    K     372      K     372         32.025
LGA    Q     373      Q     373         31.023
LGA    Y     374      Y     374         30.338
LGA    A     375      A     375         30.830
LGA    G     376      G     376         28.853
LGA    H     377      H     377         27.412
LGA    A     378      A     378         24.530
LGA    K     379      K     379         24.878
LGA    R     380      R     380         27.595
LGA    V     381      V     381         25.719
LGA    M     382      M     382         24.451
LGA    M     383      M     383         26.932
LGA    G     384      G     384         30.864
LGA    V     385      V     385         29.402
LGA    W     386      W     386         29.478
LGA    S     387      S     387         34.515
LGA    F     388      F     388         38.739
LGA    L     389      L     389         40.936
LGA    R     390      R     390         40.127
LGA    Q     391      Q     391         37.993
LGA    F     392      F     392         31.237
LGA    M     393      M     393         25.723
LGA    Y     394      Y     394         22.726
LGA    T     395      T     395         20.252
LGA    K     396      K     396         13.415
LGA    F     397      F     397         11.775
LGA    V     398      V     398          7.586
LGA    I     399      I     399          6.537
LGA    V     400      V     400          2.437
LGA    C     401      C     401          3.094
LGA    D     402      D     402          4.271
LGA    D     403      D     403          3.485
LGA    D     404      D     404          6.288
LGA    V     405      V     405          3.960
LGA    N     406      N     406          1.580
LGA    A     407      A     407          5.717
LGA    R     408      R     408          6.586
LGA    D     409      D     409          3.932
LGA    W     410      W     410          1.716
LGA    N     411      N     411          2.279
LGA    D     412      D     412          2.998
LGA    V     413      V     413          2.212
LGA    I     414      I     414          0.949
LGA    W     415      W     415          2.071
LGA    A     416      A     416          1.144
LGA    I     417      I     417          1.711
LGA    T     418      T     418          2.178
LGA    T     419      T     419          1.282
LGA    R     420      R     420          1.081
LGA    M     421      M     421          1.128
LGA    D     422      D     422          0.885
LGA    P     423      P     423          1.984
LGA    A     424      A     424          2.378
LGA    R     425      R     425          3.308
LGA    D     426      D     426          5.165
LGA    T     427      T     427          5.310
LGA    V     428      V     428          9.510
LGA    L     429      L     429         14.950
LGA    V     430      V     430         18.690
LGA    E     431      E     431         24.856
LGA    N     432      N     432         28.000
LGA    T     433      T     433         23.025
LGA    P     434      P     434         21.185
LGA    I     435      I     435         21.502
LGA    D     436      D     436         21.268
LGA    Y     437      Y     437         24.362
LGA    L     438      L     438         23.376
LGA    D     439      D     439         22.900
LGA    F     440      F     440         25.982
LGA    A     441      A     441         25.851
LGA    S     442      S     442         20.232
LGA    P     443      P     443         17.903
LGA    V     444      V     444         14.141
LGA    S     445      S     445         12.135
LGA    G     446      G     446          6.125
LGA    L     447      L     447          2.946
LGA    G     448      G     448          2.722
LGA    S     449      S     449          2.976
LGA    K     450      K     450          3.416
LGA    M     451      M     451          7.021
LGA    G     452      G     452          6.658
LGA    L     453      L     453         12.254
LGA    D     454      D     454         11.627
LGA    A     455      A     455         17.524
LGA    T     456      T     456         18.133
LGA    N     457      N     457         22.002
LGA    K     458      K     458         20.737
LGA    W     459      W     459         23.349
LGA    P     460      P     460         22.508
LGA    G     461      G     461         21.873
LGA    E     462      E     462         21.334
LGA    T     463      T     463         21.574
LGA    Q     464      Q     464         19.632
LGA    R     465      R     465         23.304
LGA    E     466      E     466         25.667
LGA    W     467      W     467         27.049

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     26    2.47    18.958    17.380     1.014

LGA_LOCAL      RMSD =  2.465  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.375  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 16.844  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.953678 * X  +   0.202271 * Y  +  -0.222678 * Z  +  58.897224
  Y_new =   0.094493 * X  +   0.904161 * Y  +   0.416609 * Z  +  37.977158
  Z_new =   0.285604 * X  +   0.376269 * Y  +  -0.881392 * Z  +  57.545757 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.738111   -0.403482  [ DEG:   156.8822    -23.1178 ]
  Theta =  -0.289637   -2.851956  [ DEG:   -16.5950   -163.4050 ]
  Phi   =   3.042832   -0.098761  [ DEG:   174.3414     -5.6586 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_3-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_3-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   26   2.47  17.380    16.84
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_3-D3
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM    348  CA  PHE   348      66.262  48.429  36.673  1.00  0.00              
ATOM    349  CA  PRO   349      66.487  48.623  33.088  1.00  0.00              
ATOM    350  CA  GLU   350      62.714  48.137  32.215  1.00  0.00              
ATOM    351  CA  ILE   351      61.461  51.060  34.218  1.00  0.00              
ATOM    352  CA  VAL   352      59.105  52.721  32.022  1.00  0.00              
ATOM    353  CA  ASP   353      58.446  55.703  33.813  1.00  0.00              
ATOM    354  CA  PHE   354      57.956  57.289  37.490  1.00  0.00              
ATOM    355  CA  TYR   355      56.338  59.996  38.237  1.00  0.00              
ATOM    356  CA  LEU   356      56.566  61.735  41.759  1.00  0.00              
ATOM    357  CA  PRO   357      54.197  64.083  42.343  1.00  0.00              
ATOM    358  CA  PRO   358      54.807  66.641  44.980  1.00  0.00              
ATOM    359  CA  GLU   359      51.144  66.904  45.786  1.00  0.00              
ATOM    360  CA  GLY   360      49.674  63.457  45.679  1.00  0.00              
ATOM    361  CA  CYS   361      52.135  63.462  48.029  1.00  0.00              
ATOM    362  CA  SER   362      51.411  66.578  49.992  1.00  0.00              
ATOM    363  CA  TYR   363      48.521  65.447  52.275  1.00  0.00              
ATOM    364  CA  ARG   364      49.731  61.983  52.392  1.00  0.00              
ATOM    365  CA  LEU   365      48.401  58.903  50.746  1.00  0.00              
ATOM    366  CA  ALA   366      49.883  55.543  52.121  1.00  0.00              
ATOM    367  CA  VAL   367      49.091  52.303  50.355  1.00  0.00              
ATOM    368  CA  VAL   368      50.845  49.250  51.761  1.00  0.00              
ATOM    369  CA  THR   369      50.264  46.186  50.463  1.00  0.00              
ATOM    370  CA  ILE   370      52.556  43.619  51.539  1.00  0.00              
ATOM    371  CA  LYS   371      52.596  40.023  51.651  1.00  0.00              
ATOM    372  CA  LYS   372      56.051  39.361  50.387  1.00  0.00              
ATOM    373  CA  GLN   373      57.471  41.989  51.979  1.00  0.00              
ATOM    374  CA  TYR   374      56.026  40.848  55.329  1.00  0.00              
ATOM    375  CA  ALA   375      55.971  37.614  55.774  1.00  0.00              
ATOM    376  CA  GLY   376      54.087  36.492  58.981  1.00  0.00              
ATOM    377  CA  HIS   377      51.426  39.139  59.042  1.00  0.00              
ATOM    378  CA  ALA   378      51.007  38.965  55.318  1.00  0.00              
ATOM    379  CA  LYS   379      50.530  35.257  54.973  1.00  0.00              
ATOM    380  CA  ARG   380      47.829  35.608  57.820  1.00  0.00              
ATOM    381  CA  VAL   381      46.250  39.045  56.240  1.00  0.00              
ATOM    382  CA  MET   382      46.055  36.861  53.091  1.00  0.00              
ATOM    383  CA  MET   383      44.204  33.917  54.537  1.00  0.00              
ATOM    384  CA  GLY   384      41.738  35.096  56.727  1.00  0.00              
ATOM    385  CA  VAL   385      40.038  37.730  54.634  1.00  0.00              
ATOM    386  CA  TRP   386      39.800  35.599  51.645  1.00  0.00              
ATOM    387  CA  SER   387      38.324  32.507  53.333  1.00  0.00              
ATOM    388  CA  PHE   388      35.601  33.873  55.249  1.00  0.00              
ATOM    389  CA  LEU   389      34.103  35.390  51.878  1.00  0.00              
ATOM    390  CA  ARG   390      35.650  35.799  48.694  1.00  0.00              
ATOM    391  CA  GLN   391      36.547  39.109  48.923  1.00  0.00              
ATOM    392  CA  PHE   392      39.869  40.229  49.744  1.00  0.00              
ATOM    393  CA  MET   393      42.502  42.981  49.811  1.00  0.00              
ATOM    394  CA  TYR   394      45.666  43.747  50.532  1.00  0.00              
ATOM    395  CA  THR   395      45.259  47.399  50.853  1.00  0.00              
ATOM    396  CA  LYS   396      46.749  48.886  53.952  1.00  0.00              
ATOM    397  CA  PHE   397      46.770  52.662  53.573  1.00  0.00              
ATOM    398  CA  VAL   398      46.884  55.119  56.390  1.00  0.00              
ATOM    399  CA  ILE   399      45.458  58.755  55.263  1.00  0.00              
ATOM    400  CA  VAL   400      46.976  62.061  56.870  1.00  0.00              
ATOM    401  CA  CYS   401      45.661  64.647  56.661  1.00  0.00              
ATOM    402  CA  ASP   402      47.384  68.295  56.798  1.00  0.00              
ATOM    403  CA  ASP   403      46.294  71.315  54.945  1.00  0.00              
ATOM    404  CA  ASP   404      47.764  73.540  57.525  1.00  0.00              
ATOM    405  CA  VAL   405      45.704  74.363  59.955  1.00  0.00              
ATOM    406  CA  ASN   406      44.409  74.941  63.354  1.00  0.00              
ATOM    407  CA  ALA   407      41.779  73.393  64.969  1.00  0.00              
ATOM    408  CA  ARG   408      41.238  74.597  67.960  1.00  0.00              
ATOM    409  CA  ASP   409      39.809  72.571  70.145  1.00  0.00              
ATOM    410  CA  TRP   410      40.369  68.797  69.849  1.00  0.00              
ATOM    411  CA  ASN   411      36.933  68.120  69.569  1.00  0.00              
ATOM    412  CA  ASP   412      37.147  69.818  66.674  1.00  0.00              
ATOM    413  CA  VAL   413      39.825  68.720  65.102  1.00  0.00              
ATOM    414  CA  ILE   414      39.270  65.107  65.787  1.00  0.00              
ATOM    415  CA  TRP   415      35.607  65.333  63.973  1.00  0.00              
ATOM    416  CA  ALA   416      37.480  66.795  61.102  1.00  0.00              
ATOM    417  CA  ILE   417      39.477  64.029  60.223  1.00  0.00              
ATOM    418  CA  THR   418      36.642  62.009  60.406  1.00  0.00              
ATOM    419  CA  THR   419      34.554  64.125  58.079  1.00  0.00              
ATOM    420  CA  ARG   420      36.962  64.302  55.196  1.00  0.00              
ATOM    421  CA  MET   421      37.398  60.419  55.000  1.00  0.00              
ATOM    422  CA  ASP   422      35.206  57.641  55.611  1.00  0.00              
ATOM    423  CA  PRO   423      36.211  55.709  58.580  1.00  0.00              
ATOM    424  CA  ALA   424      37.790  52.830  57.236  1.00  0.00              
ATOM    425  CA  ARG   425      40.380  54.265  54.969  1.00  0.00              
ATOM    426  CA  ASP   426      41.965  55.320  58.403  1.00  0.00              
ATOM    427  CA  THR   427      42.145  59.173  58.819  1.00  0.00              
ATOM    428  CA  VAL   428      44.863  60.890  60.897  1.00  0.00              
ATOM    429  CA  LEU   429      44.786  64.526  61.261  1.00  0.00              
ATOM    430  CA  VAL   430      47.416  66.749  61.929  1.00  0.00              
ATOM    431  CA  GLU   431      47.435  70.064  63.534  1.00  0.00              
ATOM    432  CA  ASN   432      50.180  72.305  61.978  1.00  0.00              
ATOM    433  CA  THR   433      51.547  70.652  59.320  1.00  0.00              
ATOM    434  CA  PRO   434      55.299  69.458  59.525  1.00  0.00              
ATOM    435  CA  ILE   435      56.147  68.745  55.903  1.00  0.00              
ATOM    436  CA  ASP   436      59.540  66.816  55.570  1.00  0.00              
ATOM    437  CA  TYR   437      62.342  65.150  54.280  1.00  0.00              
ATOM    438  CA  LEU   438      62.707  61.603  55.141  1.00  0.00              
ATOM    439  CA  ASP   439      64.178  58.883  53.558  1.00  0.00              
ATOM    440  CA  PHE   440      63.267  55.802  51.804  1.00  0.00              
ATOM    441  CA  ALA   441      66.463  53.777  52.452  1.00  0.00              
ATOM    442  CA  SER   442      66.488  53.227  56.106  1.00  0.00              
ATOM    443  CA  PRO   443      63.223  51.827  57.129  1.00  0.00              
ATOM    444  CA  VAL   444      63.383  48.108  57.719  1.00  0.00              
ATOM    445  CA  SER   445      59.692  47.769  58.479  1.00  0.00              
ATOM    446  CA  GLY   446      59.215  46.294  61.466  1.00  0.00              
ATOM    447  CA  LEU   447      56.377  47.051  63.878  1.00  0.00              
ATOM    448  CA  GLY   448      53.458  47.726  62.395  1.00  0.00              
ATOM    449  CA  SER   449      53.078  51.054  61.005  1.00  0.00              
ATOM    450  CA  LYS   450      51.172  52.457  58.030  1.00  0.00              
ATOM    451  CA  MET   451      52.463  53.472  54.772  1.00  0.00              
ATOM    452  CA  GLY   452      50.846  55.760  52.412  1.00  0.00              
ATOM    453  CA  LEU   453      53.002  56.630  49.442  1.00  0.00              
ATOM    454  CA  ASP   454      51.087  58.744  46.935  1.00  0.00              
ATOM    455  CA  ALA   455      53.131  60.177  44.205  1.00  0.00              
ATOM    456  CA  THR   456      55.979  58.415  45.218  1.00  0.00              
ATOM    457  CA  ASN   457      55.462  54.788  43.706  1.00  0.00              
ATOM    458  CA  LYS   458      55.221  55.395  40.412  1.00  0.00              
ATOM    459  CA  TRP   459      57.046  52.736  38.175  1.00  0.00              
ATOM    460  CA  PRO   460      54.755  51.972  35.242  1.00  0.00              
ATOM    461  CA  GLY   461      55.098  48.654  33.736  1.00  0.00              
ATOM    462  CA  GLU   462      51.746  46.887  34.577  1.00  0.00              
ATOM    463  CA  THR   463      51.573  48.199  38.184  1.00  0.00              
ATOM    464  CA  GLN   464      47.788  49.492  38.311  1.00  0.00              
ATOM    465  CA  ARG   465      48.041  48.081  41.988  1.00  0.00              
ATOM    466  CA  GLU   466      44.852  46.107  42.132  1.00  0.00              
ATOM    467  CA  TRP   467      45.183  44.157  45.193  1.00  0.00              
TER                                                                             
END
