
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS599_4-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS599_4-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    53       357 - 409         4.94    23.74
  LONGEST_CONTINUOUS_SEGMENT:    53       358 - 410         5.00    23.61
  LCS_AVERAGE:     29.38

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17       374 - 390         1.68    22.68
  LONGEST_CONTINUOUS_SEGMENT:    17       376 - 392         1.87    23.61
  LONGEST_CONTINUOUS_SEGMENT:    17       408 - 424         1.98    20.31
  LCS_AVERAGE:     10.29

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       376 - 388         0.84    22.12
  LONGEST_CONTINUOUS_SEGMENT:    13       409 - 421         0.88    21.33
  LCS_AVERAGE:      6.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348      8   11   19     4    5    8    9   11   12   15   15   21   22   25   27   29   32   34   35   38   39   41   43 
LCS_GDT     P     349     P     349      8   11   19     4    5    8    9   11   13   15   15   16   19   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     E     350     E     350      8   13   19     5    7    8    9   12   13   15   15   16   18   18   19   20   21   24   32   38   39   41   43 
LCS_GDT     I     351     I     351      8   13   19     5    7    8    9   12   13   15   15   16   18   18   19   28   31   34   35   38   39   41   43 
LCS_GDT     V     352     V     352      8   13   19     5    7    8    9   12   13   15   15   16   18   18   19   26   28   33   35   38   39   41   43 
LCS_GDT     D     353     D     353      8   13   19     5    7    8    9   12   13   15   15   17   18   21   23   26   27   29   30   33   39   41   42 
LCS_GDT     F     354     F     354      8   13   19     3    7    8    9   12   13   15   15   17   18   20   23   24   25   28   30   33   34   35   38 
LCS_GDT     Y     355     Y     355      8   13   47     5    7    8    9   12   13   15   15   16   18   18   19   21   21   24   26   29   32   33   43 
LCS_GDT     L     356     L     356      7   13   52     3    7    8    9   12   13   15   15   16   18   18   20   30   32   42   46   48   51   52   55 
LCS_GDT     P     357     P     357      7   13   53     3    6    8    9   12   14   19   23   28   31   37   41   44   46   48   50   53   54   56   57 
LCS_GDT     P     358     P     358      7   13   53     3   13   15   17   18   21   24   28   32   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     E     359     E     359      7   13   53     3    6    8    9   12   13   15   19   27   32   35   41   44   47   48   50   53   54   56   57 
LCS_GDT     G     360     G     360      7   14   53     3    6   10   13   16   18   22   27   32   36   39   44   46   48   49   51   53   54   56   57 
LCS_GDT     C     361     C     361      7   14   53     3    6    8    9   12   17   22   28   32   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     S     362     S     362     10   14   53     3    4    8   12   14   17   23   28   32   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     Y     363     Y     363     10   14   53     3    4   10   11   16   19   24   28   32   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     R     364     R     364     10   14   53     3    8   10   11   14   17   24   28   32   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     L     365     L     365     10   14   53     4    8   10   12   19   21   25   28   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     A     366     A     366     10   14   53     4    8   10   13   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     V     367     V     367     10   14   53     4    8   10   15   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     V     368     V     368     10   14   53     4    8   10   12   17   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     T     369     T     369     10   14   53     4    8   10   12   15   20   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     I     370     I     370     10   14   53     4    8   10   12   14   17   24   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     K     371     K     371     10   14   53     3    8   10   11   14   17   24   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     K     372     K     372     10   14   53     3    8   10   12   14   17   22   28   32   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     Q     373     Q     373      8   14   53     3    4    9   11   14   17   23   28   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     Y     374     Y     374      4   17   53     3    4    9   14   17   20   25   29   33   36   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     A     375     A     375      4   17   53     3    4    4   13   16   19   23   28   32   36   39   44   46   48   49   51   53   54   56   57 
LCS_GDT     G     376     G     376     13   17   53     4   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     H     377     H     377     13   17   53     4   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     A     378     A     378     13   17   53     6   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     K     379     K     379     13   17   53     6   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     R     380     R     380     13   17   53     6   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     V     381     V     381     13   17   53     6   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     M     382     M     382     13   17   53     6   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     M     383     M     383     13   17   53     6   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     G     384     G     384     13   17   53     4   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     V     385     V     385     13   17   53     4   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     W     386     W     386     13   17   53     4   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     S     387     S     387     13   17   53     4   13   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     F     388     F     388     13   17   53     3    7   15   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     L     389     L     389      9   17   53     3    7   14   17   20   22   25   29   33   36   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     R     390     R     390      4   17   53     3    4   15   17   20   22   25   28   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     Q     391     Q     391      4   17   53     3    4    4    6    8   15   17   24   26   33   35   39   44   47   48   50   53   54   56   57 
LCS_GDT     F     392     F     392      5   17   53     3    4    6   14   16   21   25   28   31   36   39   44   46   48   49   51   53   54   56   57 
LCS_GDT     M     393     M     393      5    7   53     3    4    5    6    9   15   21   23   30   36   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     Y     394     Y     394      5    7   53     3    7   11   17   18   21   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     T     395     T     395      5   11   53     4    7   14   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     K     396     K     396      7   11   53     3    7   14   17   20   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     F     397     F     397      7   11   53     0    7    8    9   20   21   25   28   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     V     398     V     398      7   11   53     3    7    8   12   17   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     I     399     I     399      7   11   53     3    7    8    9   17   22   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     V     400     V     400      7   11   53     3    7    8   12   15   19   25   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     C     401     C     401      7   11   53     3    7    8   11   15   19   24   29   33   37   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     D     402     D     402      7   11   53     4    5    8   11   15   18   24   29   33   37   41   43   46   48   49   51   53   54   56   57 
LCS_GDT     D     403     D     403      5   11   53     4    4    7    9   12   17   20   23   30   31   35   39   45   48   49   51   53   54   56   57 
LCS_GDT     D     404     D     404      5   11   53     4    4    7   11   15   19   24   27   31   36   40   43   46   48   49   51   53   54   56   57 
LCS_GDT     V     405     V     405      5   11   53     4    4    5    9   12   17   25   27   32   36   41   44   46   48   49   51   53   54   56   57 
LCS_GDT     N     406     N     406      5   11   53     3    4    5    8   10   11   16   23   30   31   35   41   45   48   49   51   53   54   56   57 
LCS_GDT     A     407     A     407      4    9   53     3    4    5    8   10   10   12   16   22   23   29   39   41   48   49   51   53   54   56   57 
LCS_GDT     R     408     R     408      4   17   53     3    4    7   12   15   17   19   20   22   23   35   39   41   47   49   51   51   54   54   57 
LCS_GDT     D     409     D     409     13   17   53     4   11   12   13   15   17   19   24   31   34   39   44   46   48   49   51   53   54   56   57 
LCS_GDT     W     410     W     410     13   17   53     9   11   12   13   15   17   19   23   28   32   36   41   44   47   48   51   53   54   56   57 
LCS_GDT     N     411     N     411     13   17   24     9   11   12   13   15   17   19   20   28   30   33   36   44   46   48   50   51   52   56   57 
LCS_GDT     D     412     D     412     13   17   24     9   11   12   13   15   21   23   27   29   33   36   40   44   47   48   50   51   52   56   57 
LCS_GDT     V     413     V     413     13   17   24     9   11   12   13   15   17   22   27   28   33   35   40   44   47   48   50   51   52   56   57 
LCS_GDT     I     414     I     414     13   17   24     9   11   12   13   15   17   19   20   22   28   30   34   35   42   46   49   49   52   52   54 
LCS_GDT     W     415     W     415     13   17   24     9   11   12   13   15   17   19   20   22   23   26   27   29   37   39   42   43   48   49   51 
LCS_GDT     A     416     A     416     13   17   24     9   11   12   13   15   17   19   20   22   23   26   27   29   32   34   35   41   42   46   49 
LCS_GDT     I     417     I     417     13   17   24     3   11   12   13   15   17   19   20   22   23   26   27   29   32   34   35   38   42   45   51 
LCS_GDT     T     418     T     418     13   17   24     9   11   12   13   15   17   19   20   22   23   26   27   29   32   34   35   38   42   45   51 
LCS_GDT     T     419     T     419     13   17   24     9   11   12   13   15   17   19   20   22   23   26   27   29   32   34   35   38   41   45   51 
LCS_GDT     R     420     R     420     13   17   24     3   10   12   13   15   17   19   20   22   23   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     M     421     M     421     13   17   24     3   10   12   13   15   17   19   20   22   23   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     D     422     D     422      6   17   24     4    6   12   13   15   17   19   20   22   23   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     P     423     P     423      6   17   24     4    5    6    9   13   17   19   20   22   23   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     A     424     A     424      6   17   24     4    5    7   11   14   17   19   20   22   23   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     R     425     R     425      6   10   24     4    5    6    8   13   15   18   20   22   23   26   27   29   32   33   35   38   39   41   43 
LCS_GDT     D     426     D     426      9   11   24     5    7    9   10   10   12   18   20   22   23   26   27   28   32   33   34   35   39   41   43 
LCS_GDT     T     427     T     427      9   11   24     5    7    9   10   11   12   14   20   22   22   26   27   28   32   33   35   37   39   44   51 
LCS_GDT     V     428     V     428      9   11   24     5    7    9   10   11   12   14   14   16   19   22   25   27   28   31   35   37   42   46   51 
LCS_GDT     L     429     L     429      9   11   24     5    7    9   10   11   12   14   14   15   17   21   23   25   27   29   35   37   42   45   51 
LCS_GDT     V     430     V     430      9   11   24     5    7    9   10   11   12   14   14   15   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     E     431     E     431      9   11   21     4    7    9   10   11   12   14   14   15   17   21   23   25   27   29   35   37   42   45   51 
LCS_GDT     N     432     N     432      9   11   21     4    7    9   10   11   12   14   14   15   17   21   22   25   27   29   35   37   42   45   51 
LCS_GDT     T     433     T     433      9   11   21     4    7    9   10   11   12   14   14   15   17   18   20   25   27   29   35   37   42   45   51 
LCS_GDT     P     434     P     434      9   11   21     4    5    9   10   11   12   14   14   15   17   18   20   21   24   27   30   32   33   38   42 
LCS_GDT     I     435     I     435      5   11   21     3    4    5   10   10   12   14   14   15   17   18   20   21   24   26   28   30   33   38   42 
LCS_GDT     D     436     D     436      4   11   21     3    4    4    7    9   11   13   14   15   17   18   20   21   24   26   28   30   33   38   42 
LCS_GDT     Y     437     Y     437      4    8   20     3    4    5    7    8    8    9   12   14   16   18   20   21   24   26   28   30   33   38   42 
LCS_GDT     L     438     L     438      4    8   20     3    4    5    7    8    8    9   10   13   16   18   20   23   25   27   30   32   33   38   42 
LCS_GDT     D     439     D     439      6    8   20     3    5    6    7    8    8    9   10   13   15   18   20   23   25   27   30   32   39   42   46 
LCS_GDT     F     440     F     440      6    8   20     3    5    6    7    8    8    9   12   13   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     A     441     A     441      6    8   16     4    5    6    7    9   11   11   12   14   15   18   20   23   26   30   35   37   42   45   51 
LCS_GDT     S     442     S     442      6    8   16     4    5    6    7    8   11   11   12   14   15   18   20   23   26   30   35   37   42   45   51 
LCS_GDT     P     443     P     443      6   10   16     4    5    6    7    8   10   11   12   14   15   18   20   23   26   30   35   37   42   45   51 
LCS_GDT     V     444     V     444      6   10   16     4    5    7    8    9   11   11   12   15   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     S     445     S     445      4   10   16     3    5    7    8    9   11   11   13   15   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     G     446     G     446      4   10   16     3    5    7    8    9   11   11   13   15   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     L     447     L     447      4   10   16     3    4    7    8    9   11   11   13   15   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     G     448     G     448      5   10   16     3    4    6    7    8   10   11   13   15   17   21   23   25   27   30   35   37   42   45   51 
LCS_GDT     S     449     S     449      5   10   16     3    5    7    8    9   11   11   12   14   16   19   23   25   27   30   35   37   42   45   51 
LCS_GDT     K     450     K     450      5   10   17     3    5    7    8    9   11   11   12   15   17   18   20   24   27   30   35   37   42   45   51 
LCS_GDT     M     451     M     451      5   10   17     3    4    7    8    9   11   11   12   14   15   17   19   23   26   29   35   37   42   45   51 
LCS_GDT     G     452     G     452      5   10   17     3    4    7    8    9   11   11   12   14   15   17   20   21   23   26   29   32   38   43   47 
LCS_GDT     L     453     L     453      5   10   17     3    4    6    6    8   11   11   12   14   15   16   18   20   23   25   27   32   33   37   40 
LCS_GDT     D     454     D     454      3    6   17     3    3    4    4    6    9    9   12   15   19   19   20   22   26   28   33   36   38   41   43 
LCS_GDT     A     455     A     455      3    6   17     3    3    6   10   13   15   16   18   21   22   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     T     456     T     456      3    6   17     3    4   12   13   15   17   19   20   22   22   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     N     457     N     457      3    6   17     3    4    5   10   13   17   19   20   22   22   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     K     458     K     458      4    6   17     3    4    5    7   12   15   16   18   20   22   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     W     459     W     459      4    6   17     3    4    5    7   12   15   16   18   20   22   26   27   29   32   34   35   38   39   41   43 
LCS_GDT     P     460     P     460      4    6   17     3    4    5    6   12   15   16   18   20   21   24   27   29   32   34   35   38   39   41   43 
LCS_GDT     G     461     G     461      4    6   17     3    4    6   10   13   14   16   18   20   22   25   27   29   32   34   35   38   39   41   43 
LCS_GDT     E     462     E     462      4    5   17     3    3    5    5    5    5    6    8   10   12   15   20   24   27   31   35   37   38   41   43 
LCS_GDT     T     463     T     463      4    5   17     3    3    5    5    5    6    6    8   10   12   15   16   17   21   24   30   34   37   39   41 
LCS_GDT     Q     464     Q     464      4    5   17     3    3    5    5    5    5    7    9   10   12   15   17   20   22   24   28   30   33   37   40 
LCS_GDT     R     465     R     465      3    5   17     3    3    3    4    4    6    6    8    8   12   14   16   17   18   19   21   28   29   37   40 
LCS_GDT     E     466     E     466      3    5   17     3    3    3    4    4    6    6    8    8   12   14   16   17   18   19   20   22   24   27   28 
LCS_GDT     W     467     W     467      3    5   17     3    3    3    4    4    6    6    8    8   12   14   16   17   18   19   19   22   24   28   31 
LCS_AVERAGE  LCS_A:  15.38  (   6.48   10.29   29.38 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     13     15     17     20     22     25     29     33     37     41     44     46     48     49     51     53     54     56     57 
GDT PERCENT_CA   7.50  10.83  12.50  14.17  16.67  18.33  20.83  24.17  27.50  30.83  34.17  36.67  38.33  40.00  40.83  42.50  44.17  45.00  46.67  47.50
GDT RMS_LOCAL    0.31   0.67   0.90   1.16   1.59   1.92   2.10   2.93   3.18   3.52   3.79   4.07   4.19   4.35   4.44   4.73   4.99   5.08   5.58   5.67
GDT RMS_ALL_CA  21.76  22.22  22.13  22.20  23.40  23.96  23.76  24.94  24.75  24.16  24.06  23.59  23.80  23.91  23.88  23.67  23.58  23.59  23.00  23.04

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         33.681
LGA    P     349      P     349         34.734
LGA    E     350      E     350         34.928
LGA    I     351      I     351         28.851
LGA    V     352      V     352         26.648
LGA    D     353      D     353         21.347
LGA    F     354      F     354         18.037
LGA    Y     355      Y     355         14.241
LGA    L     356      L     356         10.408
LGA    P     357      P     357         10.544
LGA    P     358      P     358         10.708
LGA    E     359      E     359         15.245
LGA    G     360      G     360         11.100
LGA    C     361      C     361          9.139
LGA    S     362      S     362          8.891
LGA    Y     363      Y     363          7.413
LGA    R     364      R     364          7.146
LGA    L     365      L     365          5.098
LGA    A     366      A     366          3.595
LGA    V     367      V     367          2.725
LGA    V     368      V     368          1.866
LGA    T     369      T     369          1.690
LGA    I     370      I     370          3.522
LGA    K     371      K     371          3.993
LGA    K     372      K     372          5.613
LGA    Q     373      Q     373          4.547
LGA    Y     374      Y     374          3.807
LGA    A     375      A     375          5.358
LGA    G     376      G     376          3.068
LGA    H     377      H     377          3.216
LGA    A     378      A     378          3.698
LGA    K     379      K     379          3.071
LGA    R     380      R     380          0.950
LGA    V     381      V     381          2.932
LGA    M     382      M     382          3.437
LGA    M     383      M     383          1.280
LGA    G     384      G     384          2.767
LGA    V     385      V     385          3.304
LGA    W     386      W     386          1.782
LGA    S     387      S     387          1.472
LGA    F     388      F     388          3.117
LGA    L     389      L     389          3.949
LGA    R     390      R     390          4.276
LGA    Q     391      Q     391          8.267
LGA    F     392      F     392          4.777
LGA    M     393      M     393          4.977
LGA    Y     394      Y     394          3.793
LGA    T     395      T     395          0.735
LGA    K     396      K     396          3.915
LGA    F     397      F     397          4.476
LGA    V     398      V     398          2.622
LGA    I     399      I     399          2.519
LGA    V     400      V     400          3.201
LGA    C     401      C     401          3.811
LGA    D     402      D     402          3.987
LGA    D     403      D     403          7.125
LGA    D     404      D     404          5.370
LGA    V     405      V     405          6.054
LGA    N     406      N     406          9.016
LGA    A     407      A     407          9.996
LGA    R     408      R     408         11.724
LGA    D     409      D     409         13.353
LGA    W     410      W     410         16.548
LGA    N     411      N     411         21.032
LGA    D     412      D     412         19.476
LGA    V     413      V     413         17.821
LGA    I     414      I     414         21.690
LGA    W     415      W     415         25.917
LGA    A     416      A     416         25.306
LGA    I     417      I     417         25.356
LGA    T     418      T     418         29.759
LGA    T     419      T     419         33.788
LGA    R     420      R     420         32.704
LGA    M     421      M     421         31.750
LGA    D     422      D     422         35.059
LGA    P     423      P     423         32.937
LGA    A     424      A     424         32.178
LGA    R     425      R     425         29.751
LGA    D     426      D     426         22.928
LGA    T     427      T     427         21.539
LGA    V     428      V     428         18.802
LGA    L     429      L     429         21.349
LGA    V     430      V     430         23.290
LGA    E     431      E     431         26.830
LGA    N     432      N     432         31.714
LGA    T     433      T     433         30.308
LGA    P     434      P     434         33.711
LGA    I     435      I     435         32.572
LGA    D     436      D     436         33.197
LGA    Y     437      Y     437         36.857
LGA    L     438      L     438         33.578
LGA    D     439      D     439         33.921
LGA    F     440      F     440         34.441
LGA    A     441      A     441         35.568
LGA    S     442      S     442         37.557
LGA    P     443      P     443         39.659
LGA    V     444      V     444         39.480
LGA    S     445      S     445         35.603
LGA    G     446      G     446         33.238
LGA    L     447      L     447         34.320
LGA    G     448      G     448         29.657
LGA    S     449      S     449         30.763
LGA    K     450      K     450         26.499
LGA    M     451      M     451         27.634
LGA    G     452      G     452         25.650
LGA    L     453      L     453         28.539
LGA    D     454      D     454         26.855
LGA    A     455      A     455         24.060
LGA    T     456      T     456         26.783
LGA    N     457      N     457         32.587
LGA    K     458      K     458         35.884
LGA    W     459      W     459         40.711
LGA    P     460      P     460         47.983
LGA    G     461      G     461         50.107
LGA    E     462      E     462         50.701
LGA    T     463      T     463         54.022
LGA    Q     464      Q     464         57.097
LGA    R     465      R     465         57.189
LGA    E     466      E     466         55.289
LGA    W     467      W     467         48.606

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     29    2.93    22.917    20.402     0.956

LGA_LOCAL      RMSD =  2.934  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.145  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 18.620  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.140518 * X  +   0.912426 * Y  +  -0.384361 * Z  +  41.207520
  Y_new =   0.155113 * X  +  -0.403707 * Y  +  -0.901643 * Z  +  46.825718
  Z_new =  -0.977852 * X  +   0.067078 * Y  +  -0.198257 * Z  +  51.047699 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.815343   -0.326249  [ DEG:   161.3073    -18.6927 ]
  Theta =   1.359940    1.781653  [ DEG:    77.9188    102.0812 ]
  Phi   =   0.834724   -2.306868  [ DEG:    47.8262   -132.1738 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_4-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_4-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   29   2.93  20.402    18.62
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_4-D3
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM    348  CA  PHE   348      43.999  65.786  82.479  1.00  0.00              
ATOM    349  CA  PRO   349      41.070  68.152  81.906  1.00  0.00              
ATOM    350  CA  GLU   350      41.744  70.862  84.499  1.00  0.00              
ATOM    351  CA  ILE   351      45.001  71.126  82.825  1.00  0.00              
ATOM    352  CA  VAL   352      46.732  75.001  83.313  1.00  0.00              
ATOM    353  CA  ASP   353      49.531  74.260  81.791  1.00  0.00              
ATOM    354  CA  PHE   354      52.154  72.405  79.845  1.00  0.00              
ATOM    355  CA  TYR   355      55.510  71.819  79.182  1.00  0.00              
ATOM    356  CA  LEU   356      57.223  70.617  76.060  1.00  0.00              
ATOM    357  CA  PRO   357      60.095  69.069  74.622  1.00  0.00              
ATOM    358  CA  PRO   358      61.102  70.259  71.533  1.00  0.00              
ATOM    359  CA  GLU   359      62.881  67.423  70.243  1.00  0.00              
ATOM    360  CA  GLY   360      60.754  64.800  71.102  1.00  0.00              
ATOM    361  CA  CYS   361      57.913  66.169  68.984  1.00  0.00              
ATOM    362  CA  SER   362      59.947  67.015  66.007  1.00  0.00              
ATOM    363  CA  TYR   363      61.973  63.767  65.711  1.00  0.00              
ATOM    364  CA  ARG   364      58.960  61.863  65.973  1.00  0.00              
ATOM    365  CA  LEU   365      55.295  62.808  65.274  1.00  0.00              
ATOM    366  CA  ALA   366      53.890  64.311  62.158  1.00  0.00              
ATOM    367  CA  VAL   367      51.076  66.356  61.363  1.00  0.00              
ATOM    368  CA  VAL   368      50.346  67.002  57.948  1.00  0.00              
ATOM    369  CA  THR   369      47.589  69.615  56.524  1.00  0.00              
ATOM    370  CA  ILE   370      46.255  68.922  53.444  1.00  0.00              
ATOM    371  CA  LYS   371      44.070  71.393  51.334  1.00  0.00              
ATOM    372  CA  LYS   372      41.072  68.591  50.176  1.00  0.00              
ATOM    373  CA  GLN   373      42.802  70.168  46.628  1.00  0.00              
ATOM    374  CA  TYR   374      46.382  69.369  47.236  1.00  0.00              
ATOM    375  CA  ALA   375      45.976  66.107  49.446  1.00  0.00              
ATOM    376  CA  GLY   376      48.426  63.536  47.850  1.00  0.00              
ATOM    377  CA  HIS   377      51.358  65.839  48.745  1.00  0.00              
ATOM    378  CA  ALA   378      50.665  65.554  51.996  1.00  0.00              
ATOM    379  CA  LYS   379      50.947  62.351  52.592  1.00  0.00              
ATOM    380  CA  ARG   380      53.775  62.017  50.693  1.00  0.00              
ATOM    381  CA  VAL   381      55.933  64.317  52.435  1.00  0.00              
ATOM    382  CA  MET   382      54.943  62.667  55.717  1.00  0.00              
ATOM    383  CA  MET   383      56.004  59.380  54.385  1.00  0.00              
ATOM    384  CA  GLY   384      59.572  60.319  53.573  1.00  0.00              
ATOM    385  CA  VAL   385      59.730  61.806  56.584  1.00  0.00              
ATOM    386  CA  TRP   386      58.701  59.451  58.686  1.00  0.00              
ATOM    387  CA  SER   387      60.877  56.910  56.897  1.00  0.00              
ATOM    388  CA  PHE   388      63.898  59.283  57.330  1.00  0.00              
ATOM    389  CA  LEU   389      64.909  58.863  60.913  1.00  0.00              
ATOM    390  CA  ARG   390      66.903  55.950  61.736  1.00  0.00              
ATOM    391  CA  GLN   391      63.887  53.413  62.242  1.00  0.00              
ATOM    392  CA  PHE   392      61.104  55.546  63.947  1.00  0.00              
ATOM    393  CA  MET   393      60.608  56.127  67.304  1.00  0.00              
ATOM    394  CA  TYR   394      57.520  57.461  68.039  1.00  0.00              
ATOM    395  CA  THR   395      56.047  57.550  65.145  1.00  0.00              
ATOM    396  CA  LYS   396      52.804  58.595  64.958  1.00  0.00              
ATOM    397  CA  PHE   397      50.867  60.828  61.534  1.00  0.00              
ATOM    398  CA  VAL   398      48.247  62.190  61.850  1.00  0.00              
ATOM    399  CA  ILE   399      46.585  63.098  58.307  1.00  0.00              
ATOM    400  CA  VAL   400      44.128  65.965  58.084  1.00  0.00              
ATOM    401  CA  CYS   401      41.905  66.636  54.888  1.00  0.00              
ATOM    402  CA  ASP   402      40.498  69.397  54.421  1.00  0.00              
ATOM    403  CA  ASP   403      40.148  72.367  51.792  1.00  0.00              
ATOM    404  CA  ASP   404      37.942  74.649  53.968  1.00  0.00              
ATOM    405  CA  VAL   405      40.846  75.561  55.688  1.00  0.00              
ATOM    406  CA  ASN   406      41.682  79.123  57.470  1.00  0.00              
ATOM    407  CA  ALA   407      44.529  79.236  59.807  1.00  0.00              
ATOM    408  CA  ARG   408      45.263  81.502  62.208  1.00  0.00              
ATOM    409  CA  ASP   409      48.633  82.161  62.714  1.00  0.00              
ATOM    410  CA  TRP   410      50.253  79.433  60.689  1.00  0.00              
ATOM    411  CA  ASN   411      52.912  81.113  58.685  1.00  0.00              
ATOM    412  CA  ASP   412      54.631  82.437  61.749  1.00  0.00              
ATOM    413  CA  VAL   413      54.422  79.431  63.835  1.00  0.00              
ATOM    414  CA  ILE   414      55.917  77.312  61.484  1.00  0.00              
ATOM    415  CA  TRP   415      58.666  79.614  60.869  1.00  0.00              
ATOM    416  CA  ALA   416      59.676  79.226  64.385  1.00  0.00              
ATOM    417  CA  ILE   417      59.878  75.776  65.192  1.00  0.00              
ATOM    418  CA  THR   418      61.878  74.825  61.718  1.00  0.00              
ATOM    419  CA  THR   419      64.602  77.505  62.374  1.00  0.00              
ATOM    420  CA  ARG   420      64.829  76.070  65.867  1.00  0.00              
ATOM    421  CA  MET   421      65.093  72.683  64.803  1.00  0.00              
ATOM    422  CA  ASP   422      67.319  70.757  62.546  1.00  0.00              
ATOM    423  CA  PRO   423      66.213  70.909  59.038  1.00  0.00              
ATOM    424  CA  ALA   424      66.388  66.761  58.943  1.00  0.00              
ATOM    425  CA  ARG   425      63.851  66.614  62.062  1.00  0.00              
ATOM    426  CA  ASP   426      60.361  66.956  60.469  1.00  0.00              
ATOM    427  CA  THR   427      57.867  69.789  60.410  1.00  0.00              
ATOM    428  CA  VAL   428      54.205  69.495  61.367  1.00  0.00              
ATOM    429  CA  LEU   429      51.529  71.397  59.361  1.00  0.00              
ATOM    430  CA  VAL   430      48.244  71.901  61.209  1.00  0.00              
ATOM    431  CA  GLU   431      44.921  71.980  59.313  1.00  0.00              
ATOM    432  CA  ASN   432      42.182  73.518  60.937  1.00  0.00              
ATOM    433  CA  THR   433      44.304  75.474  63.418  1.00  0.00              
ATOM    434  CA  PRO   434      43.362  78.111  65.674  1.00  0.00              
ATOM    435  CA  ILE   435      46.401  80.065  66.269  1.00  0.00              
ATOM    436  CA  ASP   436      46.252  80.897  70.166  1.00  0.00              
ATOM    437  CA  TYR   437      47.902  81.845  72.917  1.00  0.00              
ATOM    438  CA  LEU   438      46.954  79.647  75.878  1.00  0.00              
ATOM    439  CA  ASP   439      48.361  81.589  78.732  1.00  0.00              
ATOM    440  CA  PHE   440      49.240  79.297  81.781  1.00  0.00              
ATOM    441  CA  ALA   441      46.130  80.223  83.969  1.00  0.00              
ATOM    442  CA  SER   442      43.220  79.427  82.152  1.00  0.00              
ATOM    443  CA  PRO   443      40.848  76.746  82.770  1.00  0.00              
ATOM    444  CA  VAL   444      40.185  75.487  79.480  1.00  0.00              
ATOM    445  CA  SER   445      40.746  72.048  79.793  1.00  0.00              
ATOM    446  CA  GLY   446      41.103  71.142  76.034  1.00  0.00              
ATOM    447  CA  LEU   447      42.470  73.874  74.388  1.00  0.00              
ATOM    448  CA  GLY   448      44.509  73.332  71.610  1.00  0.00              
ATOM    449  CA  SER   449      45.955  76.924  71.459  1.00  0.00              
ATOM    450  CA  LYS   450      48.484  77.098  69.188  1.00  0.00              
ATOM    451  CA  MET   451      51.303  79.645  69.567  1.00  0.00              
ATOM    452  CA  GLY   452      54.577  79.624  67.762  1.00  0.00              
ATOM    453  CA  LEU   453      57.417  80.742  70.358  1.00  0.00              
ATOM    454  CA  ASP   454      55.388  79.099  72.648  1.00  0.00              
ATOM    455  CA  ALA   455      55.965  76.031  71.145  1.00  0.00              
ATOM    456  CA  THR   456      59.856  76.259  70.715  1.00  0.00              
ATOM    457  CA  ASN   457      60.468  77.278  73.988  1.00  0.00              
ATOM    458  CA  LYS   458      58.523  75.488  76.691  1.00  0.00              
ATOM    459  CA  TRP   459      59.871  74.027  79.358  1.00  0.00              
ATOM    460  CA  PRO   460      61.951  76.158  81.738  1.00  0.00              
ATOM    461  CA  GLY   461      64.565  73.734  82.784  1.00  0.00              
ATOM    462  CA  GLU   462      66.326  75.318  85.629  1.00  0.00              
ATOM    463  CA  THR   463      64.422  77.003  88.053  1.00  0.00              
ATOM    464  CA  GLN   464      61.846  74.835  90.096  1.00  0.00              
ATOM    465  CA  ARG   465      64.651  72.243  90.319  1.00  0.00              
ATOM    466  CA  GLU   466      63.010  68.828  90.091  1.00  0.00              
ATOM    467  CA  TRP   467      59.575  69.220  88.880  1.00  0.00              
TER                                                                             
END
