
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  120 (  120),  selected  120 , name T0356TS599_5-D3
# Molecule2: number of CA atoms  120 (  972),  selected  120 , name T0356_D3.pdb
# PARAMETERS: T0356TS599_5-D3.T0356_D3.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32       390 - 421         4.94    23.38
  LONGEST_CONTINUOUS_SEGMENT:    32       391 - 422         4.99    23.13
  LONGEST_CONTINUOUS_SEGMENT:    32       392 - 423         4.84    22.80
  LONGEST_CONTINUOUS_SEGMENT:    32       393 - 424         4.83    22.43
  LONGEST_CONTINUOUS_SEGMENT:    32       396 - 427         4.87    21.45
  LONGEST_CONTINUOUS_SEGMENT:    32       397 - 428         4.74    21.32
  LONGEST_CONTINUOUS_SEGMENT:    32       398 - 429         4.97    21.37
  LCS_AVERAGE:     21.99

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       375 - 390         2.00    20.95
  LONGEST_CONTINUOUS_SEGMENT:    16       376 - 391         1.41    21.22
  LONGEST_CONTINUOUS_SEGMENT:    16       406 - 421         1.86    23.32
  LONGEST_CONTINUOUS_SEGMENT:    16       407 - 422         1.59    24.06
  LCS_AVERAGE:      9.86

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    14       407 - 420         0.95    25.31
  LCS_AVERAGE:      7.10

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  120
LCS_GDT     F     348     F     348     10   13   21     3    8   10   11   12   12   15   16   18   21   23   24   25   30   33   37   41   44   47   50 
LCS_GDT     P     349     P     349     10   13   21     3    8   10   11   12   12   15   16   18   21   23   24   28   31   34   38   41   44   49   51 
LCS_GDT     E     350     E     350     10   13   21     5    8   10   11   12   12   15   16   18   21   23   24   25   30   33   36   44   46   49   51 
LCS_GDT     I     351     I     351     10   13   21     6    8   10   11   12   12   15   16   18   21   23   24   28   31   36   38   44   46   49   51 
LCS_GDT     V     352     V     352     10   13   21     5    8   10   11   12   12   14   16   17   21   23   24   30   32   36   38   44   46   49   51 
LCS_GDT     D     353     D     353     10   13   21     6    8   10   11   12   12   14   16   17   18   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     F     354     F     354     10   13   21     6    8   10   11   12   12   14   16   17   20   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     Y     355     Y     355     10   13   21     6    8   10   11   12   16   18   19   20   21   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     L     356     L     356     10   13   21     6    8   10   11   13   18   19   19   20   21   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     P     357     P     357     10   13   21     4    8    9   11   12   17   19   19   20   21   23   25   29   32   36   38   44   46   49   51 
LCS_GDT     P     358     P     358      6   13   21     4    5    6   10   12   12   14   16   17   18   20   22   23   29   29   32   39   44   49   51 
LCS_GDT     E     359     E     359      6   13   21     6    8   10   11   12   12   14   16   17   19   20   22   25   29   33   37   44   46   49   51 
LCS_GDT     G     360     G     360      6   13   24     4    8   15   16   16   18   19   19   20   21   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     C     361     C     361      6    8   24     4    4    7    9   11   14   14   18   19   21   22   22   25   33   36   38   42   46   49   51 
LCS_GDT     S     362     S     362      4    9   24     4    4    5    7   10   11   14   16   19   21   25   30   30   33   36   38   41   46   49   51 
LCS_GDT     Y     363     Y     363      4    9   24     4    4    5    7    9   11   13   15   17   19   22   29   30   33   35   38   42   44   47   51 
LCS_GDT     R     364     R     364      7    9   24     4    7    7    8    9   11   18   19   21   24   27   29   33   35   37   40   42   45   48   51 
LCS_GDT     L     365     L     365      7    9   27     5    7    7    8    9   11   14   16   21   24   26   29   33   35   37   40   44   46   49   51 
LCS_GDT     A     366     A     366      7    9   27     5    7    7    8    9   11   13   16   17   18   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     V     367     V     367      7    9   27     5    7    7    8    9   11   13   14   16   20   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     V     368     V     368      7    9   27     5    7    7    8    9   11   13   14   16   20   25   30   30   33   36   38   41   46   49   51 
LCS_GDT     T     369     T     369      7    9   27     4    7    7    8    9   11   13   14   16   21   25   30   30   33   36   38   41   44   47   50 
LCS_GDT     I     370     I     370      7    9   27     5    7    7    8    9   11   13   14   16   21   25   30   30   33   36   38   41   44   47   50 
LCS_GDT     K     371     K     371      7    9   27     3    3    5    8    9   10   12   14   17   20   21   23   25   29   33   38   41   44   47   50 
LCS_GDT     K     372     K     372      4    9   27     3    3    4    6    8   10   11   14   17   21   25   30   30   33   36   38   41   44   47   50 
LCS_GDT     Q     373     Q     373      4    5   27     3    3    4    5    8   10   14   17   19   21   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     Y     374     Y     374      4    5   27     3    4    4    4    6   10   15   17   19   20   22   25   30   33   36   38   44   46   49   51 
LCS_GDT     A     375     A     375      4   16   27     3    4    4    4    9   11   17   17   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     G     376     G     376     13   16   27     5   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     H     377     H     377     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     A     378     A     378     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     K     379     K     379     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     R     380     R     380     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     V     381     V     381     13   16   27     6   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     M     382     M     382     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     M     383     M     383     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     G     384     G     384     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     V     385     V     385     13   16   27     7   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     W     386     W     386     13   16   27     5   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     S     387     S     387     13   16   27     5   12   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     F     388     F     388     13   16   27     3    9   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     L     389     L     389      6   16   30     3    3    7   10   14   18   19   19   21   22   23   30   30   33   36   38   44   46   49   51 
LCS_GDT     R     390     R     390      3   16   32     3    6   13   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     Q     391     Q     391      3   16   32     3    7   15   16   16   18   19   19   21   22   25   30   30   33   36   38   44   46   49   51 
LCS_GDT     F     392     F     392      3    4   32     3    4    5    5    6    6   10   15   19   22   25   29   30   33   36   38   44   46   49   51 
LCS_GDT     M     393     M     393     12   14   32     5    9   12   13   14   15   17   19   21   24   26   29   30   32   36   38   41   44   47   51 
LCS_GDT     Y     394     Y     394     12   14   32     5    9   12   13   14   15   17   19   21   24   26   29   30   31   33   35   40   43   44   48 
LCS_GDT     T     395     T     395     12   14   32     5    9   12   13   14   15   17   19   21   24   26   29   30   31   33   34   39   41   44   49 
LCS_GDT     K     396     K     396     12   14   32     5    9   12   13   14   15   17   19   21   24   26   29   30   31   32   34   35   38   40   44 
LCS_GDT     F     397     F     397     12   14   32     5    9   12   13   14   15   17   19   21   24   26   29   30   31   32   34   35   38   40   44 
LCS_GDT     V     398     V     398     12   14   32     4    9   12   13   14   15   17   19   21   24   26   29   31   35   37   40   42   45   46   48 
LCS_GDT     I     399     I     399     12   14   32     4    9   12   13   15   17   18   20   22   24   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     V     400     V     400     12   14   32     4    9   12   13   15   17   18   20   22   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     C     401     C     401     12   14   32     3    9   12   13   14   15   17   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     D     402     D     402     12   14   32     3    9   12   13   14   15   17   20   24   26   27   29   30   31   32   34   40   42   46   48 
LCS_GDT     D     403     D     403     12   14   32     4    8   12   13   14   15   17   19   24   26   27   29   30   31   32   34   35   38   40   44 
LCS_GDT     D     404     D     404     12   14   32     4    6   12   13   14   15   17   19   21   24   25   29   30   31   32   34   35   38   40   41 
LCS_GDT     V     405     V     405      8   14   32     4    6   10   13   14   15   16   19   24   26   27   29   30   31   36   40   42   45   46   48 
LCS_GDT     N     406     N     406      8   16   32     4    6    8    8   11   14   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     A     407     A     407     14   16   32     3    6   12   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     R     408     R     408     14   16   32     4   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     D     409     D     409     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   50 
LCS_GDT     W     410     W     410     14   16   32     3   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   50 
LCS_GDT     N     411     N     411     14   16   32     8   12   14   15   17   17   18   20   22   25   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     D     412     D     412     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     V     413     V     413     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     I     414     I     414     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     W     415     W     415     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     A     416     A     416     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     I     417     I     417     14   16   32     6   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     T     418     T     418     14   16   32     8   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     T     419     T     419     14   16   32     3   12   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     R     420     R     420     14   16   32     3    8   14   15   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     M     421     M     421      6   16   32     3    6   12   14   17   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     D     422     D     422      6   16   32     4    5    9   12   15   17   18   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     P     423     P     423      6   11   32     4    5    6    7   11   14   17   20   24   26   27   29   32   35   37   40   42   45   46   48 
LCS_GDT     A     424     A     424      6    9   32     4    5    6    8   11   13   17   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     R     425     R     425      6   12   32     4    5    6    6   11   13   17   20   24   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     D     426     D     426      9   12   32     4    7    9    9   11   12   14   20   24   26   27   28   33   35   37   40   42   45   46   48 
LCS_GDT     T     427     T     427      9   12   32     4    7    9    9   11   11   12   19   23   26   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     V     428     V     428      9   12   32     4    7    9    9   11   11   12   13   14   16   20   24   27   29   30   32   39   45   46   48 
LCS_GDT     L     429     L     429      9   12   32     4    7    9    9   11   11   12   13   14   17   20   22   23   29   29   30   31   33   36   39 
LCS_GDT     V     430     V     430      9   12   19     3    7    9    9   11   11   12   13   14   14   19   22   23   29   29   30   31   33   33   37 
LCS_GDT     E     431     E     431      9   12   19     3    7    9    9   11   11   12   13   14   18   20   22   23   29   29   30   31   31   33   35 
LCS_GDT     N     432     N     432      9   12   19     3    7    9    9   11   11   12   13   14   18   20   22   23   29   29   30   31   31   33   35 
LCS_GDT     T     433     T     433      9   12   19     4    7    9    9   11   11   12   13   14   18   20   22   23   29   29   30   31   33   34   37 
LCS_GDT     P     434     P     434      9   12   19     4    4    9    9   11   11   12   13   14   17   20   23   24   29   29   30   33   34   37   41 
LCS_GDT     I     435     I     435      4   12   19     4    4    7    8   11   11   12   13   18   20   22   25   28   33   35   38   39   42   46   48 
LCS_GDT     D     436     D     436      4   12   19     4    4    5    8   17   17   17   19   21   23   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     Y     437     Y     437      4    8   19     3    4    5    7    7    8   11   18   20   23   27   29   32   35   37   40   42   45   46   48 
LCS_GDT     L     438     L     438      6    8   19     4   11   14   15   17   17   17   19   21   24   27   29   33   35   37   40   42   45   46   48 
LCS_GDT     D     439     D     439      6    7   19     3    4    6    6    7    8    9   18   21   24   26   29   33   35   37   40   42   45   46   48 
LCS_GDT     F     440     F     440      6    7   19     3    4    6    6    7    8    9   10   13   15   19   22   30   34   37   39   42   45   46   48 
LCS_GDT     A     441     A     441      6    7   18     3    4    6    6    7   10   11   12   14   15   17   18   19   25   29   35   40   45   46   48 
LCS_GDT     S     442     S     442      6    7   17     3    4    6    6    7   10   11   13   14   15   17   18   19   20   23   34   40   43   46   48 
LCS_GDT     P     443     P     443      6    9   17     2    4    6    6    8    9   11   12   14   15   17   18   19   20   22   26   29   42   46   47 
LCS_GDT     V     444     V     444      5    9   24     3    5    6    6    8   10   11   13   14   17   26   29   33   35   37   40   42   45   46   48 
LCS_GDT     S     445     S     445      5    9   24     3    5    6    7    8   10   11   13   14   15   18   20   27   30   37   40   42   45   46   48 
LCS_GDT     G     446     G     446      5   10   24     3    5    6    7    9   11   13   16   18   21   23   24   29   34   37   40   42   45   46   50 
LCS_GDT     L     447     L     447      5   10   24     3    5    6    7   10   12   15   16   18   21   26   29   33   35   37   40   44   46   49   51 
LCS_GDT     G     448     G     448      5   10   24     3    5    6    8   10   12   15   16   18   24   26   29   33   35   37   40   44   46   49   51 
LCS_GDT     S     449     S     449      7   10   24     3    5    7    8    9   12   15   16   18   21   23   29   33   35   37   40   44   46   49   51 
LCS_GDT     K     450     K     450      7   10   24     4    5    7   10   13   14   17   18   21   22   23   24   30   35   37   40   44   46   49   51 
LCS_GDT     M     451     M     451      7   10   24     4    5    7    8   12   14   17   18   21   22   23   24   26   28   33   33   44   46   49   51 
LCS_GDT     G     452     G     452      7   10   24     4    5    7    8   10   12   15   17   21   22   23   24   26   28   33   37   44   46   49   51 
LCS_GDT     L     453     L     453      7   10   24     3    5    7    8    9   11   12   17   21   22   23   24   26   28   31   36   44   46   49   51 
LCS_GDT     D     454     D     454      7   10   24     4    5    7    8    9   11   15   16   18   21   23   24   26   28   29   31   44   46   49   51 
LCS_GDT     A     455     A     455      7   10   24     3    5    7    8    9   11   13   15   18   19   22   24   26   28   31   35   44   46   49   51 
LCS_GDT     T     456     T     456      3    9   24     3    3    5    7    8   11   12   15   18   19   19   21   25   29   32   37   44   46   49   51 
LCS_GDT     N     457     N     457      3    6   24     3    3    4    5    6    7   10   11   12   13   15   16   20   27   30   34   44   46   49   51 
LCS_GDT     K     458     K     458      4    6   24     3    3    4    5    6   11   12   15   18   19   23   24   25   27   29   30   33   38   41   49 
LCS_GDT     W     459     W     459      4    6   24     3    3    4    5    6   11   12   15   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     P     460     P     460      4    6   24     3    5    5    5    6   11   12   15   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     G     461     G     461      4    6   24     4    5    5    7   10   12   15   16   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     E     462     E     462      4    5   24     4    5    5    5    6    7   13   16   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     T     463     T     463      4    5   24     4    5    5    5    6    9   13   16   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     Q     464     Q     464      4    5   24     3    4    5    7   10   12   15   16   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     R     465     R     465      4    5   24     3    4    4    4    5    8   15   16   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_GDT     E     466     E     466      4    5   24     3    4    4    4    5    7   10   11   13   15   19   22   24   26   29   30   32   35   41   44 
LCS_GDT     W     467     W     467      3    5   24     4    5    5    6   10   12   15   16   18   21   23   24   25   27   29   30   33   38   41   44 
LCS_AVERAGE  LCS_A:  12.98  (   7.10    9.86   21.99 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      8     12     15     16     17     18     19     20     24     26     27     30     33     35     37     40     44     46     49     51 
GDT PERCENT_CA   6.67  10.00  12.50  13.33  14.17  15.00  15.83  16.67  20.00  21.67  22.50  25.00  27.50  29.17  30.83  33.33  36.67  38.33  40.83  42.50
GDT RMS_LOCAL    0.33   0.53   1.03   1.13   1.28   1.59   1.74   2.38   3.28   3.47   3.58   4.67   4.52   4.63   4.84   5.23   6.68   6.79   7.02   7.13
GDT RMS_ALL_CA  26.18  20.64  21.06  21.14  25.20  21.44  21.48  22.16  21.84  21.62  21.44  22.00  23.35  23.59  23.41  23.24  19.05  19.27  19.47  19.58

#      Molecule1      Molecule2       DISTANCE
LGA    F     348      F     348         32.183
LGA    P     349      P     349         37.234
LGA    E     350      E     350         35.400
LGA    I     351      I     351         28.805
LGA    V     352      V     352         28.035
LGA    D     353      D     353         22.233
LGA    F     354      F     354         18.920
LGA    Y     355      Y     355         15.859
LGA    L     356      L     356         14.367
LGA    P     357      P     357         17.183
LGA    P     358      P     358         20.981
LGA    E     359      E     359         21.928
LGA    G     360      G     360         15.049
LGA    C     361      C     361         15.397
LGA    S     362      S     362         16.928
LGA    Y     363      Y     363         14.181
LGA    R     364      R     364         11.420
LGA    L     365      L     365         10.196
LGA    A     366      A     366          9.723
LGA    V     367      V     367         14.950
LGA    V     368      V     368         19.372
LGA    T     369      T     369         25.707
LGA    I     370      I     370         30.742
LGA    K     371      K     371         36.028
LGA    K     372      K     372         40.464
LGA    Q     373      Q     373         42.283
LGA    Y     374      Y     374         40.430
LGA    A     375      A     375         40.223
LGA    G     376      G     376         38.875
LGA    H     377      H     377         36.579
LGA    A     378      A     378         31.021
LGA    K     379      K     379         28.672
LGA    R     380      R     380         29.854
LGA    V     381      V     381         27.094
LGA    M     382      M     382         22.193
LGA    M     383      M     383         21.221
LGA    G     384      G     384         24.137
LGA    V     385      V     385         20.271
LGA    W     386      W     386         16.198
LGA    S     387      S     387         18.526
LGA    F     388      F     388         22.588
LGA    L     389      L     389         21.311
LGA    R     390      R     390         21.686
LGA    Q     391      Q     391         22.213
LGA    F     392      F     392         19.196
LGA    M     393      M     393         13.752
LGA    Y     394      Y     394         15.192
LGA    T     395      T     395         12.215
LGA    K     396      K     396         12.215
LGA    F     397      F     397          9.830
LGA    V     398      V     398          6.523
LGA    I     399      I     399          2.993
LGA    V     400      V     400          2.292
LGA    C     401      C     401          4.867
LGA    D     402      D     402          8.036
LGA    D     403      D     403          9.214
LGA    D     404      D     404         10.929
LGA    V     405      V     405          7.217
LGA    N     406      N     406          3.908
LGA    A     407      A     407          2.838
LGA    R     408      R     408          3.906
LGA    D     409      D     409          1.760
LGA    W     410      W     410          1.764
LGA    N     411      N     411          3.474
LGA    D     412      D     412          2.308
LGA    V     413      V     413          0.640
LGA    I     414      I     414          2.429
LGA    W     415      W     415          2.163
LGA    A     416      A     416          0.931
LGA    I     417      I     417          3.480
LGA    T     418      T     418          2.797
LGA    T     419      T     419          1.344
LGA    R     420      R     420          1.041
LGA    M     421      M     421          1.213
LGA    D     422      D     422          0.702
LGA    P     423      P     423          3.824
LGA    A     424      A     424          4.875
LGA    R     425      R     425          5.673
LGA    D     426      D     426          7.111
LGA    T     427      T     427          6.241
LGA    V     428      V     428          9.894
LGA    L     429      L     429         14.488
LGA    V     430      V     430         17.429
LGA    E     431      E     431         23.470
LGA    N     432      N     432         26.435
LGA    T     433      T     433         20.244
LGA    P     434      P     434         19.617
LGA    I     435      I     435         16.341
LGA    D     436      D     436         16.671
LGA    Y     437      Y     437         17.247
LGA    L     438      L     438         17.630
LGA    D     439      D     439         18.087
LGA    F     440      F     440         22.486
LGA    A     441      A     441         22.808
LGA    S     442      S     442         22.519
LGA    P     443      P     443         24.842
LGA    V     444      V     444         20.030
LGA    S     445      S     445         21.411
LGA    G     446      G     446         17.503
LGA    L     447      L     447         13.878
LGA    G     448      G     448         14.192
LGA    S     449      S     449         11.010
LGA    K     450      K     450         10.081
LGA    M     451      M     451         12.545
LGA    G     452      G     452         13.394
LGA    L     453      L     453         19.314
LGA    D     454      D     454         21.144
LGA    A     455      A     455         26.388
LGA    T     456      T     456         29.608
LGA    N     457      N     457         31.028
LGA    K     458      K     458         31.284
LGA    W     459      W     459         36.885
LGA    P     460      P     460         38.779
LGA    G     461      G     461         40.641
LGA    E     462      E     462         37.462
LGA    T     463      T     463         39.118
LGA    Q     464      Q     464         40.260
LGA    R     465      R     465         36.590
LGA    E     466      E     466         34.005
LGA    W     467      W     467         29.518

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  120  120    4.0     20    2.38    18.333    16.307     0.807

LGA_LOCAL      RMSD =  2.379  Number of atoms =   20  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.800  Number of atoms =  120 
Std_ALL_ATOMS  RMSD = 15.300  (standard rmsd on all 120 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.577270 * X  +   0.780464 * Y  +   0.240073 * Z  +  56.477947
  Y_new =   0.488372 * X  +  -0.094373 * Y  +  -0.867518 * Z  +  42.706028
  Z_new =  -0.654410 * X  +   0.618036 * Y  +  -0.435635 * Z  +  47.940277 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.184783   -0.956809  [ DEG:   125.1789    -54.8211 ]
  Theta =   0.713402    2.428190  [ DEG:    40.8749    139.1251 ]
  Phi   =   0.702169   -2.439424  [ DEG:    40.2313   -139.7687 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0356TS599_5-D3                               
REMARK     2: T0356_D3.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0356TS599_5-D3.T0356_D3.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  120  120   4.0   20   2.38  16.307    15.30
REMARK  ---------------------------------------------------------- 
MOLECULE T0356TS599_5-D3
PFRMAT TS                                                                       
TARGET T0356                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM    348  CA  PHE   348      64.796  51.877  77.813  1.00  0.00              
ATOM    349  CA  PRO   349      63.012  51.739  80.953  1.00  0.00              
ATOM    350  CA  GLU   350      61.166  54.561  81.112  1.00  0.00              
ATOM    351  CA  ILE   351      59.612  54.423  77.531  1.00  0.00              
ATOM    352  CA  VAL   352      56.326  55.585  77.521  1.00  0.00              
ATOM    353  CA  ASP   353      55.084  55.117  73.639  1.00  0.00              
ATOM    354  CA  PHE   354      56.842  53.220  70.729  1.00  0.00              
ATOM    355  CA  TYR   355      55.959  53.386  67.464  1.00  0.00              
ATOM    356  CA  LEU   356      56.994  52.493  63.933  1.00  0.00              
ATOM    357  CA  PRO   357      55.525  52.616  60.928  1.00  0.00              
ATOM    358  CA  PRO   358      57.500  52.903  57.727  1.00  0.00              
ATOM    359  CA  GLU   359      55.650  54.877  55.666  1.00  0.00              
ATOM    360  CA  GLY   360      54.340  57.051  58.219  1.00  0.00              
ATOM    361  CA  CYS   361      57.877  57.939  59.633  1.00  0.00              
ATOM    362  CA  SER   362      58.455  59.397  56.189  1.00  0.00              
ATOM    363  CA  TYR   363      56.387  61.997  55.270  1.00  0.00              
ATOM    364  CA  ARG   364      55.700  63.488  59.144  1.00  0.00              
ATOM    365  CA  LEU   365      58.869  62.802  60.765  1.00  0.00              
ATOM    366  CA  ALA   366      60.705  60.094  63.131  1.00  0.00              
ATOM    367  CA  VAL   367      63.084  61.101  66.053  1.00  0.00              
ATOM    368  CA  VAL   368      65.853  58.372  66.902  1.00  0.00              
ATOM    369  CA  THR   369      68.536  58.362  68.716  1.00  0.00              
ATOM    370  CA  ILE   370      70.317  55.481  70.606  1.00  0.00              
ATOM    371  CA  LYS   371      73.545  54.543  68.952  1.00  0.00              
ATOM    372  CA  LYS   372      75.460  52.995  71.931  1.00  0.00              
ATOM    373  CA  GLN   373      72.471  51.936  74.020  1.00  0.00              
ATOM    374  CA  TYR   374      70.404  49.816  71.410  1.00  0.00              
ATOM    375  CA  ALA   375      72.790  48.915  69.006  1.00  0.00              
ATOM    376  CA  GLY   376      73.556  44.972  69.180  1.00  0.00              
ATOM    377  CA  HIS   377      70.400  43.773  69.417  1.00  0.00              
ATOM    378  CA  ALA   378      69.021  46.340  67.279  1.00  0.00              
ATOM    379  CA  LYS   379      70.866  45.604  64.526  1.00  0.00              
ATOM    380  CA  ARG   380      70.191  41.643  64.302  1.00  0.00              
ATOM    381  CA  VAL   381      66.614  42.706  64.336  1.00  0.00              
ATOM    382  CA  MET   382      67.106  44.893  61.372  1.00  0.00              
ATOM    383  CA  MET   383      68.231  42.426  59.294  1.00  0.00              
ATOM    384  CA  GLY   384      65.678  39.757  60.060  1.00  0.00              
ATOM    385  CA  VAL   385      63.037  42.398  59.332  1.00  0.00              
ATOM    386  CA  TRP   386      64.585  43.441  56.319  1.00  0.00              
ATOM    387  CA  SER   387      65.144  40.382  54.704  1.00  0.00              
ATOM    388  CA  PHE   388      61.323  39.289  55.706  1.00  0.00              
ATOM    389  CA  LEU   389      59.905  42.387  53.954  1.00  0.00              
ATOM    390  CA  ARG   390      56.752  42.490  51.840  1.00  0.00              
ATOM    391  CA  GLN   391      54.324  43.908  54.029  1.00  0.00              
ATOM    392  CA  PHE   392      51.201  45.374  54.539  1.00  0.00              
ATOM    393  CA  MET   393      50.767  48.382  56.908  1.00  0.00              
ATOM    394  CA  TYR   394      47.152  48.662  57.782  1.00  0.00              
ATOM    395  CA  THR   395      46.872  52.545  58.033  1.00  0.00              
ATOM    396  CA  LYS   396      43.572  53.114  56.511  1.00  0.00              
ATOM    397  CA  PHE   397      43.794  56.633  56.281  1.00  0.00              
ATOM    398  CA  VAL   398      46.201  59.534  55.944  1.00  0.00              
ATOM    399  CA  ILE   399      46.295  62.419  57.706  1.00  0.00              
ATOM    400  CA  VAL   400      48.456  65.102  56.075  1.00  0.00              
ATOM    401  CA  CYS   401      49.386  68.452  57.674  1.00  0.00              
ATOM    402  CA  ASP   402      51.932  70.578  57.322  1.00  0.00              
ATOM    403  CA  ASP   403      53.892  72.745  59.050  1.00  0.00              
ATOM    404  CA  ASP   404      52.334  76.102  59.850  1.00  0.00              
ATOM    405  CA  VAL   405      49.157  74.689  61.022  1.00  0.00              
ATOM    406  CA  ASN   406      47.556  75.685  64.156  1.00  0.00              
ATOM    407  CA  ALA   407      45.813  72.814  65.839  1.00  0.00              
ATOM    408  CA  ARG   408      43.895  73.765  68.351  1.00  0.00              
ATOM    409  CA  ASP   409      42.540  70.847  70.157  1.00  0.00              
ATOM    410  CA  TRP   410      43.366  67.864  68.512  1.00  0.00              
ATOM    411  CA  ASN   411      39.719  66.406  68.742  1.00  0.00              
ATOM    412  CA  ASP   412      38.561  68.836  66.225  1.00  0.00              
ATOM    413  CA  VAL   413      41.254  67.732  63.833  1.00  0.00              
ATOM    414  CA  ILE   414      40.336  64.561  64.012  1.00  0.00              
ATOM    415  CA  TRP   415      36.652  65.192  63.406  1.00  0.00              
ATOM    416  CA  ALA   416      37.566  67.211  60.341  1.00  0.00              
ATOM    417  CA  ILE   417      39.832  64.970  58.547  1.00  0.00              
ATOM    418  CA  THR   418      36.877  62.037  59.599  1.00  0.00              
ATOM    419  CA  THR   419      34.264  64.192  57.538  1.00  0.00              
ATOM    420  CA  ARG   420      36.466  64.355  54.761  1.00  0.00              
ATOM    421  CA  MET   421      37.091  60.758  54.778  1.00  0.00              
ATOM    422  CA  ASP   422      35.269  57.536  55.430  1.00  0.00              
ATOM    423  CA  PRO   423      34.739  56.789  59.076  1.00  0.00              
ATOM    424  CA  ALA   424      36.779  53.591  59.444  1.00  0.00              
ATOM    425  CA  ARG   425      39.765  55.011  57.635  1.00  0.00              
ATOM    426  CA  ASP   426      41.624  55.594  60.545  1.00  0.00              
ATOM    427  CA  THR   427      43.071  59.416  60.161  1.00  0.00              
ATOM    428  CA  VAL   428      46.052  60.547  62.069  1.00  0.00              
ATOM    429  CA  LEU   429      46.433  64.117  61.807  1.00  0.00              
ATOM    430  CA  VAL   430      49.857  65.743  62.089  1.00  0.00              
ATOM    431  CA  GLU   431      50.325  68.975  64.051  1.00  0.00              
ATOM    432  CA  ASN   432      53.159  71.078  63.084  1.00  0.00              
ATOM    433  CA  THR   433      55.160  68.469  61.669  1.00  0.00              
ATOM    434  CA  PRO   434      58.901  68.644  61.818  1.00  0.00              
ATOM    435  CA  ILE   435      60.479  65.586  61.318  1.00  0.00              
ATOM    436  CA  ASP   436      64.187  64.889  61.472  1.00  0.00              
ATOM    437  CA  TYR   437      65.295  61.569  61.657  1.00  0.00              
ATOM    438  CA  LEU   438      67.906  60.544  64.176  1.00  0.00              
ATOM    439  CA  ASP   439      69.533  57.641  63.654  1.00  0.00              
ATOM    440  CA  PHE   440      72.293  57.034  65.461  1.00  0.00              
ATOM    441  CA  ALA   441      72.416  53.051  65.414  1.00  0.00              
ATOM    442  CA  SER   442      73.287  52.863  62.131  1.00  0.00              
ATOM    443  CA  PRO   443      74.347  51.072  59.209  1.00  0.00              
ATOM    444  CA  VAL   444      72.231  48.539  57.780  1.00  0.00              
ATOM    445  CA  SER   445      74.061  47.703  54.719  1.00  0.00              
ATOM    446  CA  GLY   446      70.805  47.591  52.979  1.00  0.00              
ATOM    447  CA  LEU   447      67.809  47.762  54.873  1.00  0.00              
ATOM    448  CA  GLY   448      65.460  50.348  55.682  1.00  0.00              
ATOM    449  CA  SER   449      62.668  49.675  58.163  1.00  0.00              
ATOM    450  CA  LYS   450      61.476  52.985  59.121  1.00  0.00              
ATOM    451  CA  MET   451      60.762  53.150  62.999  1.00  0.00              
ATOM    452  CA  GLY   452      59.558  55.654  65.025  1.00  0.00              
ATOM    453  CA  LEU   453      60.808  56.384  68.549  1.00  0.00              
ATOM    454  CA  ASP   454      58.753  57.449  70.812  1.00  0.00              
ATOM    455  CA  ALA   455      59.654  57.138  74.579  1.00  0.00              
ATOM    456  CA  THR   456      62.147  60.260  74.638  1.00  0.00              
ATOM    457  CA  ASN   457      62.494  61.287  71.100  1.00  0.00              
ATOM    458  CA  LYS   458      59.746  63.886  71.982  1.00  0.00              
ATOM    459  CA  TRP   459      60.806  65.650  75.141  1.00  0.00              
ATOM    460  CA  PRO   460      59.320  69.192  73.843  1.00  0.00              
ATOM    461  CA  GLY   461      61.878  71.357  73.557  1.00  0.00              
ATOM    462  CA  GLU   462      60.068  74.618  73.160  1.00  0.00              
ATOM    463  CA  THR   463      57.178  74.432  74.961  1.00  0.00              
ATOM    464  CA  GLN   464      54.786  76.492  72.820  1.00  0.00              
ATOM    465  CA  ARG   465      54.939  73.534  70.457  1.00  0.00              
ATOM    466  CA  GLU   466      52.649  70.639  70.821  1.00  0.00              
ATOM    467  CA  TRP   467      49.657  72.204  72.094  1.00  0.00              
TER                                                                             
END
