
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  116 , name T0360TS168_3
# Molecule2: number of CA atoms  116 (  917),  selected  116 , name T0360.pdb
# PARAMETERS: T0360TS168_3.T0360.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        29 - 70          4.96    18.48
  LONGEST_CONTINUOUS_SEGMENT:    42        34 - 75          4.98    18.14
  LCS_AVERAGE:     30.20

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18        19 - 36          1.86    26.11
  LCS_AVERAGE:     11.13

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16         3 - 18          0.93    42.15
  LCS_AVERAGE:      8.23

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     M       1     M       1      3   17   25     0    3    3    4    7   11   17   17   18   20   21   22   25   28   32   33   36   36   37   39 
LCS_GDT     T       2     T       2      3   17   25     0    3    3    4    6   11   17   17   18   20   21   22   25   28   32   33   34   36   37   38 
LCS_GDT     Q       3     Q       3     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   25   28   30   31   33   35   37   38 
LCS_GDT     E       4     E       4     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   24   25   26   28   30   33   35   36 
LCS_GDT     T       5     T       5     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   24   27   27   28   30   33   35   36 
LCS_GDT     A       6     A       6     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   25   28   32   33   36   36   37   38 
LCS_GDT     L       7     L       7     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   25   28   30   31   33   36   37   38 
LCS_GDT     G       8     G       8     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   24   27   27   28   32   33   35   37 
LCS_GDT     A       9     A       9     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   25   28   32   33   36   36   37   39 
LCS_GDT     A      10     A      10     16   17   25    14   15   15   16   16   16   17   17   18   20   22   23   25   28   32   33   36   36   37   40 
LCS_GDT     L      11     L      11     16   17   25    14   15   15   16   16   16   17   17   18   20   21   22   25   28   29   31   33   36   37   38 
LCS_GDT     K      12     K      12     16   17   27    14   15   15   16   16   16   17   17   18   20   21   22   25   28   32   33   36   36   37   39 
LCS_GDT     S      13     S      13     16   17   28    14   15   15   16   16   16   17   17   19   21   23   23   26   29   32   35   39   41   42   44 
LCS_GDT     A      14     A      14     16   17   28    14   15   15   16   16   16   17   17   18   21   23   23   25   28   32   33   36   36   40   43 
LCS_GDT     V      15     V      15     16   17   28    14   15   15   16   16   16   17   17   18   20   21   22   25   28   32   33   36   36   40   43 
LCS_GDT     Q      16     Q      16     16   17   36    14   15   15   16   16   16   17   18   19   21   23   24   29   31   35   38   39   41   45   47 
LCS_GDT     T      17     T      17     16   17   39     3   15   15   16   16   17   17   18   19   21   23   25   30   34   37   39   42   45   48   51 
LCS_GDT     M      18     M      18     16   17   39     3    3   11   16   16   16   16   17   20   23   26   29   33   35   38   42   46   49   52   55 
LCS_GDT     S      19     S      19     14   18   39     0    3   12   15   16   17   17   21   27   30   32   35   40   44   49   52   58   60   64   67 
LCS_GDT     K      20     K      20     14   18   39    13   13   13   15   16   17   17   22   27   30   32   34   37   39   41   44   44   48   51   53 
LCS_GDT     K      21     K      21     14   18   39    13   13   13   15   16   17   17   22   27   30   32   34   37   40   41   44   47   49   52   57 
LCS_GDT     K      22     K      22     14   18   39    13   13   13   15   16   17   17   22   27   30   32   38   43   50   53   57   59   63   66   67 
LCS_GDT     Q      23     Q      23     14   18   39    13   13   13   15   16   17   17   22   27   30   32   35   42   47   52   57   59   62   66   67 
LCS_GDT     T      24     T      24     14   18   39    13   13   13   15   16   17   17   22   27   30   32   35   37   41   42   46   52   53   64   67 
LCS_GDT     E      25     E      25     14   18   39    13   13   13   15   16   17   17   22   27   30   32   35   41   50   53   57   59   63   66   67 
LCS_GDT     M      26     M      26     14   18   39    13   13   13   15   16   17   18   22   28   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     I      27     I      27     14   18   39    13   13   13   15   16   17   17   22   27   30   36   39   43   50   53   57   59   63   66   67 
LCS_GDT     A      28     A      28     14   18   39    13   13   13   15   16   17   17   22   27   30   32   35   41   48   53   57   59   63   66   67 
LCS_GDT     D      29     D      29     14   18   42    13   13   13   15   16   17   17   22   27   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     H      30     H      30     14   18   42    13   13   13   15   17   22   25   26   30   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     I      31     I      31     14   18   42    13   13   13   15   16   17   17   22   28   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     Y      32     Y      32     14   18   42    13   13   13   15   16   17   17   22   27   30   33   37   43   50   53   57   59   63   66   67 
LCS_GDT     G      33     G      33      4   18   42     3    4    4    6   11   16   17   22   27   30   34   40   45   50   53   57   59   63   66   67 
LCS_GDT     K      34     K      34      4   18   42     3    4    5   10   15   16   17   22   28   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     Y      35     Y      35      7   18   42     6    7   10   15   16   17   17   19   29   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     D      36     D      36      7   18   42     6    7    8   13   14   17   17   21   27   30   34   41   45   50   53   57   59   63   66   67 
LCS_GDT     V      37     V      37      7    8   42     6    7    8    9   14   16   17   22   27   30   33   37   43   47   50   55   59   63   66   67 
LCS_GDT     F      38     F      38      7    8   42     6    7    8    9   11   15   17   22   27   30   34   38   45   50   53   57   59   63   66   67 
LCS_GDT     K      39     K      39      7    8   42     6    7    8    9    9   15   17   22   27   30   34   40   45   50   53   57   59   63   66   67 
LCS_GDT     R      40     R      40      7    8   42     6    7    8    9    9   15   17   22   27   30   33   37   43   47   50   57   59   63   66   67 
LCS_GDT     F      41     F      41      7    8   42     6    7    8    9    9   10   13   16   22   28   32   35   41   45   50   52   56   61   64   66 
LCS_GDT     K      42     K      42      3    8   42     3    3    3    7    9    9   13   18   22   28   32   37   43   47   52   57   59   63   66   67 
LCS_GDT     P      43     P      43      3    6   42     3    4    5    7    9   14   17   22   27   30   34   40   45   50   53   57   59   63   66   67 
LCS_GDT     L      44     L      44      3    6   42     3    3    3    5   11   15   17   22   27   30   34   38   43   49   53   57   59   63   66   67 
LCS_GDT     A      45     A      45      3    6   42     3    3    3    4    6    9   15   21   27   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     L      46     L      46      3   11   42     3    3    4    5    9   15   17   21   27   30   33   38   43   49   53   57   59   63   66   67 
LCS_GDT     G      47     G      47      3   11   42     3    6   11   17   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     I      48     I      48      9   11   42     8    8   13   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     D      49     D      49      9   11   42     8    8    8    9    9   14   18   25   30   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     Q      50     Q      50      9   11   42     8    8   16   17   20   23   26   29   31   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     D      51     D      51      9   11   42     8    8    8    9   10   15   18   26   30   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     L      52     L      52      9   11   42     8    8    8    9   15   18   21   24   30   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     I      53     I      53      9   11   42     8    8    8   13   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      54     A      54      9   11   42     8    8    8    9   11   15   18   26   30   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      55     A      55      9   11   42     8    8    8    9    9   10   11   24   27   30   34   38   42   46   52   57   59   63   66   67 
LCS_GDT     L      56     L      56      9   11   42     3    4    7    9   11   17   21   24   27   31   35   40   43   49   53   56   59   63   66   67 
LCS_GDT     P      57     P      57      4   10   42     3    4    5    7   11   17   21   24   27   31   35   40   43   49   53   56   59   63   66   67 
LCS_GDT     Q      58     Q      58      4    7   42     3    4    5    7    9   14   17   22   25   30   34   40   43   46   49   55   58   61   64   67 
LCS_GDT     Y      59     Y      59      4   16   42     3    4    5    7    9   14   20   26   30   33   37   41   43   49   53   56   58   63   66   67 
LCS_GDT     D      60     D      60     15   17   42     3   10   15   19   21   23   26   29   31   33   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      61     A      61     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      62     A      62     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     L      63     L      63     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     I      64     I      64     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      65     A      65     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     R      66     R      66     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     V      67     V      67     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     L      68     L      68     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      69     A      69     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     N      70     N      70     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     H      71     H      71     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     C      72     C      72     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     R      73     R      73     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     R      74     R      74     15   17   42    14   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     P      75     P      75      9   17   42     9    9    9    9   15   18   21   25   29   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     R      76     R      76      9   17   40     9    9    9    9    9   12   22   24   27   31   36   40   43   49   51   55   58   63   66   67 
LCS_GDT     Y      77     Y      77      9   10   40     9    9    9    9    9   16   20   25   31   33   37   41   44   49   51   54   58   61   66   67 
LCS_GDT     L      78     L      78      9   10   40     9    9    9    9   13   19   25   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     K      79     K      79      9   10   40     9   15   16   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A      80     A      80      9   10   40     9    9    9    9    9   10   16   22   25   33   37   41   43   48   51   54   58   60   63   67 
LCS_GDT     L      81     L      81      9   10   40     9    9    9    9    9   11   14   17   23   31   35   41   43   44   48   51   56   60   63   67 
LCS_GDT     A      82     A      82      9   10   40     9    9    9    9   11   15   20   26   30   33   38   41   44   49   52   56   58   62   66   67 
LCS_GDT     R      83     R      83      3   10   40     3    3    4    7   11   15   20   26   30   33   37   41   44   47   51   54   58   62   64   67 
LCS_GDT     G      84     G      84      5    7   38     3    4    6    7    7    9   15   18   22   24   27   34   42   44   48   51   54   55   60   64 
LCS_GDT     G      85     G      85      5    7   31     3    3    6    7    7    8   18   22   25   31   34   40   43   45   48   51   54   55   58   63 
LCS_GDT     K      86     K      86      5    7   31     3    4    6    7   11   15   18   24   27   33   37   41   43   45   48   51   54   56   61   65 
LCS_GDT     R      87     R      87      5    7   31     3    4    6    7    9   11   16   22   25   31   31   37   40   44   47   50   52   55   58   62 
LCS_GDT     F      88     F      88      5    7   31     3    4    6    7    7    8   14   19   23   27   34   37   39   44   47   48   52   54   58   62 
LCS_GDT     D      89     D      89      4    7   31     3    3    6    7    7    8    8   12   14   24   28   32   37   41   45   47   49   53   58   62 
LCS_GDT     L      90     L      90      3    5   26     0    3    4    7    8   14   15   20   24   28   29   35   38   42   45   47   52   54   58   62 
LCS_GDT     N      91     N      91      3    6   26     1    3    4    7   10   14   16   20   24   26   29   35   38   42   45   47   52   54   58   62 
LCS_GDT     N      92     N      92      3   11   26     0    4    8    8   12   14   16   19   23   24   28   31   34   39   41   47   52   53   58   62 
LCS_GDT     R      93     R      93      4   11   26     3    4    8    8   12   14   16   20   23   26   29   33   36   41   42   47   52   53   57   62 
LCS_GDT     F      94     F      94      4   11   26     3    4    6    7    9   14   16   20   23   26   29   33   38   43   48   51   55   59   62   65 
LCS_GDT     K      95     K      95      4   11   26     3    4    8    8   12   14   16   20   23   26   29   33   38   42   45   47   49   54   58   62 
LCS_GDT     G      96     G      96      4   11   26     3    4    8    8   12   14   16   20   23   26   29   34   38   42   45   47   50   54   58   62 
LCS_GDT     E      97     E      97      4   11   26     3    4    8    8   12   14   16   20   24   28   32   36   42   46   50   52   57   60   64   67 
LCS_GDT     V      98     V      98      4   11   26     3    4    8    8   12   14   19   23   30   33   38   41   44   49   52   56   58   62   66   67 
LCS_GDT     T      99     T      99      9   11   26     4    9    9   12   14   14   20   24   29   32   37   41   43   47   50   53   57   62   64   67 
LCS_GDT     P     100     P     100      9   11   26     8    9    9   12   14   17   22   27   30   35   38   41   44   49   53   56   58   63   66   67 
LCS_GDT     E     101     E     101      9   11   26     8    9    9   12   14   22   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     E     102     E     102      9   11   26     8    9    9   12   14   16   22   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     Q     103     Q     103      9   10   26     8    9    9   12   15   21   25   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A     104     A     104      9   10   26     8    9   13   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     I     105     I     105      9   10   26     8    9    9   12   19   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     A     106     A     106      9   10   26     8    9   13   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     Q     107     Q     107      9   10   26     8    9    9   12   16   20   22   24   27   33   37   40   44   49   51   54   58   63   66   67 
LCS_GDT     N     108     N     108      3   10   26     3    3   13   19   21   23   26   29   31   35   38   41   45   50   53   57   59   63   66   67 
LCS_GDT     H     109     H     109      3    6   26     3    4   13   19   21   23   26   29   31   35   38   41   44   50   53   57   59   63   66   67 
LCS_GDT     P     110     P     110      4    7   26     4    4    7   13   20   23   26   29   31   33   38   41   44   49   51   54   58   61   64   67 
LCS_GDT     F     111     F     111      4    7   26     4    4    7    7   10   12   19   22   26   33   37   41   42   45   50   51   55   57   60   63 
LCS_GDT     V     112     V     112      5    7   26     4    5    7    7    7    8    9   10   12   18   22   25   27   33   41   47   51   54   57   62 
LCS_GDT     Q     113     Q     113      5    7   26     4    5    8   12   14   14   16   18   21   28   31   34   38   42   45   50   53   56   59   62 
LCS_GDT     Q     114     Q     114      5    7   25     4    5    7    7    7    8    9   10   18   19   21   27   33   37   42   45   48   50   54   57 
LCS_GDT     A     115     A     115      5    7   19     4    5    7    7    7    8    9   10   12   15   15   16   17   18   18   18   35   35   41   45 
LCS_GDT     L     116     L     116      5    7   19     3    5    7    7    7    8    9   11   12   15   15   16   17   18   21   32   35   35   41   45 
LCS_AVERAGE  LCS_A:  16.52  (   8.23   11.13   30.20 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     19     21     23     26     29     31     35     38     41     45     50     53     57     59     63     66     67 
GDT PERCENT_CA  12.07  12.93  13.79  16.38  18.10  19.83  22.41  25.00  26.72  30.17  32.76  35.34  38.79  43.10  45.69  49.14  50.86  54.31  56.90  57.76
GDT RMS_LOCAL    0.24   0.38   0.61   1.40   1.52   1.71   2.02   2.39   2.63   3.57   3.76   3.72   4.48   4.90   5.03   5.47   5.57   5.83   6.04   6.14
GDT RMS_ALL_CA  17.05  42.41  16.85  16.93  16.94  16.97  16.94  17.01  17.00  17.52  17.60  17.24  17.71  17.71  17.84  17.77  17.85  17.84  17.78  17.71

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         45.937
LGA    T       2      T       2         46.183
LGA    Q       3      Q       3         44.782
LGA    E       4      E       4         43.579
LGA    T       5      T       5         41.710
LGA    A       6      A       6         38.105
LGA    L       7      L       7         36.294
LGA    G       8      G       8         35.469
LGA    A       9      A       9         33.306
LGA    A      10      A      10         30.645
LGA    L      11      L      11         29.826
LGA    K      12      K      12         29.765
LGA    S      13      S      13         27.662
LGA    A      14      A      14         26.657
LGA    V      15      V      15         26.732
LGA    Q      16      Q      16         27.302
LGA    T      17      T      17         25.903
LGA    M      18      M      18         24.998
LGA    S      19      S      19         22.448
LGA    K      20      K      20         24.672
LGA    K      21      K      21         24.447
LGA    K      22      K      22         18.791
LGA    Q      23      Q      23         16.834
LGA    T      24      T      24         19.132
LGA    E      25      E      25         17.629
LGA    M      26      M      26         11.946
LGA    I      27      I      27         12.299
LGA    A      28      A      28         15.077
LGA    D      29      D      29         13.042
LGA    H      30      H      30          8.675
LGA    I      31      I      31         10.353
LGA    Y      32      Y      32         14.568
LGA    G      33      G      33         16.224
LGA    K      34      K      34         12.850
LGA    Y      35      Y      35         10.402
LGA    D      36      D      36         13.973
LGA    V      37      V      37         14.824
LGA    F      38      F      38         14.003
LGA    K      39      K      39         16.916
LGA    R      40      R      40         19.742
LGA    F      41      F      41         18.778
LGA    K      42      K      42         14.628
LGA    P      43      P      43         10.913
LGA    L      44      L      44         11.130
LGA    A      45      A      45          8.287
LGA    L      46      L      46          7.213
LGA    G      47      G      47          2.187
LGA    I      48      I      48          3.492
LGA    D      49      D      49          5.274
LGA    Q      50      Q      50          3.153
LGA    D      51      D      51          5.686
LGA    L      52      L      52          7.414
LGA    I      53      I      53          3.615
LGA    A      54      A      54          5.170
LGA    A      55      A      55         10.776
LGA    L      56      L      56          9.604
LGA    P      57      P      57          9.881
LGA    Q      58      Q      58          9.904
LGA    Y      59      Y      59          6.740
LGA    D      60      D      60          2.574
LGA    A      61      A      61          3.198
LGA    A      62      A      62          2.043
LGA    L      63      L      63          1.995
LGA    I      64      I      64          2.198
LGA    A      65      A      65          1.774
LGA    R      66      R      66          0.953
LGA    V      67      V      67          0.911
LGA    L      68      L      68          1.363
LGA    A      69      A      69          1.933
LGA    N      70      N      70          1.886
LGA    H      71      H      71          1.628
LGA    C      72      C      72          2.582
LGA    R      73      R      73          2.889
LGA    R      74      R      74          2.774
LGA    P      75      P      75          6.933
LGA    R      76      R      76          7.032
LGA    Y      77      Y      77          4.383
LGA    L      78      L      78          3.990
LGA    K      79      K      79          2.814
LGA    A      80      A      80          6.248
LGA    L      81      L      81          8.289
LGA    A      82      A      82          5.671
LGA    R      83      R      83          5.716
LGA    G      84      G      84         10.668
LGA    G      85      G      85          9.366
LGA    K      86      K      86          7.693
LGA    R      87      R      87         11.249
LGA    F      88      F      88         11.416
LGA    D      89      D      89         15.743
LGA    L      90      L      90         16.957
LGA    N      91      N      91         17.770
LGA    N      92      N      92         16.880
LGA    R      93      R      93         16.892
LGA    F      94      F      94         12.399
LGA    K      95      K      95         16.309
LGA    G      96      G      96         14.463
LGA    E      97      E      97          9.545
LGA    V      98      V      98          6.213
LGA    T      99      T      99          8.026
LGA    P     100      P     100          5.143
LGA    E     101      E     101          2.917
LGA    E     102      E     102          4.302
LGA    Q     103      Q     103          3.839
LGA    A     104      A     104          2.654
LGA    I     105      I     105          3.295
LGA    A     106      A     106          1.787
LGA    Q     107      Q     107          6.509
LGA    N     108      N     108          2.590
LGA    H     109      H     109          1.714
LGA    P     110      P     110          2.462
LGA    F     111      F     111          7.120
LGA    V     112      V     112         12.536
LGA    Q     113      Q     113         11.110
LGA    Q     114      Q     114         15.071
LGA    A     115      A     115         20.028
LGA    L     116      L     116         20.767

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  116    4.0     29    2.39    25.862    21.715     1.162

LGA_LOCAL      RMSD =  2.395  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.157  Number of atoms =  116 
Std_ALL_ATOMS  RMSD = 15.480  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.315611 * X  +  -0.779672 * Y  +   0.540834 * Z  + -72.544609
  Y_new =   0.260923 * X  +   0.476684 * Y  +   0.839459 * Z  +   3.895600
  Z_new =  -0.912310 * X  +   0.406058 * Y  +   0.052988 * Z  + -17.487816 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.441036   -1.700557  [ DEG:    82.5653    -97.4347 ]
  Theta =   1.148889    1.992703  [ DEG:    65.8265    114.1735 ]
  Phi   =   2.450767   -0.690826  [ DEG:   140.4186    -39.5814 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS168_3                                  
REMARK     2: T0360.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0360TS168_3.T0360.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  116   4.0   29   2.39  21.715    15.48
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS168_3
PFRMAT TS
TARGET T0360
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1     -81.462  16.417   2.762  1.00 25.00           C
ATOM      2  CA  THR     2     -77.691  15.783   2.856  1.00 25.00           C
ATOM      3  CA  GLN     3     -78.314  13.612   5.966  1.00 25.00           C
ATOM      4  CA  GLU     4     -75.260  12.224   7.813  1.00 25.00           C
ATOM      5  CA  THR     5     -77.251   9.109   8.814  1.00 25.00           C
ATOM      6  CA  ALA     6     -78.361   8.621   5.183  1.00 25.00           C
ATOM      7  CA  LEU     7     -74.732   8.945   4.004  1.00 25.00           C
ATOM      8  CA  GLY     8     -73.629   6.361   6.608  1.00 25.00           C
ATOM      9  CA  ALA     9     -76.389   3.974   5.443  1.00 25.00           C
ATOM     10  CA  ALA    10     -75.280   4.427   1.806  1.00 25.00           C
ATOM     11  CA  LEU    11     -71.653   3.698   2.795  1.00 25.00           C
ATOM     12  CA  LYS    12     -72.769   0.539   4.650  1.00 25.00           C
ATOM     13  CA  SER    13     -74.756  -0.594   1.579  1.00 25.00           C
ATOM     14  CA  ALA    14     -71.697  -0.002  -0.649  1.00 25.00           C
ATOM     15  CA  VAL    15     -69.519  -2.034   1.759  1.00 25.00           C
ATOM     16  CA  GLN    16     -72.082  -4.880   1.712  1.00 25.00           C
ATOM     17  CA  THR    17     -72.117  -4.818  -2.117  1.00 25.00           C
ATOM     18  CA  MET    18     -70.952  -8.448  -1.702  1.00 25.00           C
ATOM     19  CA  SER    19     -74.575  -9.448  -2.139  1.00 25.00           C
ATOM     20  CA  LYS    20     -73.234 -12.035  -4.592  1.00 25.00           C
ATOM     21  CA  LYS    21     -74.352 -15.400  -6.041  1.00 25.00           C
ATOM     22  CA  LYS    22     -77.765 -13.911  -6.933  1.00 25.00           C
ATOM     23  CA  GLN    23     -76.052 -10.944  -8.643  1.00 25.00           C
ATOM     24  CA  THR    24     -73.822 -13.344 -10.627  1.00 25.00           C
ATOM     25  CA  GLU    25     -76.899 -15.357 -11.696  1.00 25.00           C
ATOM     26  CA  MET    26     -78.648 -12.138 -12.811  1.00 25.00           C
ATOM     27  CA  ILE    27     -75.553 -11.123 -14.824  1.00 25.00           C
ATOM     28  CA  ALA    28     -75.467 -14.576 -16.480  1.00 25.00           C
ATOM     29  CA  ASP    29     -79.182 -14.272 -17.361  1.00 25.00           C
ATOM     30  CA  HIS    30     -78.567 -10.805 -18.868  1.00 25.00           C
ATOM     31  CA  ILE    31     -75.654 -12.193 -20.933  1.00 25.00           C
ATOM     32  CA  TYR    32     -77.870 -15.058 -22.178  1.00 25.00           C
ATOM     33  CA  GLY    33     -76.430 -17.391 -24.849  1.00 25.00           C
ATOM     34  CA  LYS    34     -76.644 -14.131 -26.788  1.00 25.00           C
ATOM     35  CA  TYR    35     -73.155 -13.481 -25.348  1.00 25.00           C
ATOM     36  CA  ASP    36     -71.590 -14.132 -28.782  1.00 25.00           C
ATOM     37  CA  VAL    37     -74.074 -11.708 -30.402  1.00 25.00           C
ATOM     38  CA  PHE    38     -73.227  -9.050 -27.778  1.00 25.00           C
ATOM     39  CA  LYS    39     -69.489  -9.549 -28.443  1.00 25.00           C
ATOM     40  CA  ARG    40     -70.085  -9.186 -32.208  1.00 25.00           C
ATOM     41  CA  PHE    41     -72.067  -5.964 -31.608  1.00 25.00           C
ATOM     42  CA  LYS    42     -74.200  -4.099 -29.014  1.00 25.00           C
ATOM     43  CA  PRO    43     -71.828  -1.114 -28.808  1.00 25.00           C
ATOM     44  CA  LEU    44     -71.401  -1.079 -32.585  1.00 25.00           C
ATOM     45  CA  ALA    45     -71.272   2.588 -33.390  1.00 25.00           C
ATOM     46  CA  LEU    46     -74.962   2.514 -32.637  1.00 25.00           C
ATOM     47  CA  GLY    47     -75.290   3.517 -28.981  1.00 25.00           C
ATOM     48  CA  ILE    48     -77.133   3.044 -25.686  1.00 25.00           C
ATOM     49  CA  ASP    49     -79.161   0.535 -27.750  1.00 25.00           C
ATOM     50  CA  GLN    50     -80.322  -1.204 -24.541  1.00 25.00           C
ATOM     51  CA  ASP    51     -81.362   2.172 -23.060  1.00 25.00           C
ATOM     52  CA  LEU    52     -83.310   3.001 -26.250  1.00 25.00           C
ATOM     53  CA  ILE    53     -85.065  -0.400 -26.091  1.00 25.00           C
ATOM     54  CA  ALA    54     -85.977   0.215 -22.423  1.00 25.00           C
ATOM     55  CA  ALA    55     -87.376   3.664 -23.323  1.00 25.00           C
ATOM     56  CA  LEU    56     -90.738   1.993 -23.421  1.00 25.00           C
ATOM     57  CA  PRO    57     -93.794   4.240 -22.782  1.00 25.00           C
ATOM     58  CA  GLN    58     -94.533   4.831 -19.071  1.00 25.00           C
ATOM     59  CA  TYR    59     -90.721   5.277 -18.810  1.00 25.00           C
ATOM     60  CA  ASP    60     -89.713   3.764 -15.500  1.00 25.00           C
ATOM     61  CA  ALA    61     -86.622   2.591 -17.492  1.00 25.00           C
ATOM     62  CA  ALA    62     -85.351   6.101 -16.637  1.00 25.00           C
ATOM     63  CA  LEU    63     -83.979   4.819 -13.300  1.00 25.00           C
ATOM     64  CA  ILE    64     -82.216   1.936 -15.103  1.00 25.00           C
ATOM     65  CA  ALA    65     -80.690   4.404 -17.605  1.00 25.00           C
ATOM     66  CA  ARG    66     -79.473   6.611 -14.722  1.00 25.00           C
ATOM     67  CA  VAL    67     -77.912   3.562 -13.012  1.00 25.00           C
ATOM     68  CA  LEU    68     -76.161   2.596 -16.279  1.00 25.00           C
ATOM     69  CA  ALA    69     -74.821   6.164 -16.644  1.00 25.00           C
ATOM     70  CA  ASN    70     -73.527   6.074 -13.040  1.00 25.00           C
ATOM     71  CA  HIS    71     -71.807   2.720 -13.717  1.00 25.00           C
ATOM     72  CA  CYS    72     -70.188   4.159 -16.876  1.00 25.00           C
ATOM     73  CA  ARG    73     -68.960   7.197 -14.892  1.00 25.00           C
ATOM     74  CA  ARG    74     -67.495   4.885 -12.213  1.00 25.00           C
ATOM     75  CA  PRO    75     -65.723   2.833 -14.917  1.00 25.00           C
ATOM     76  CA  ARG    76     -64.293   6.040 -16.447  1.00 25.00           C
ATOM     77  CA  TYR    77     -63.053   7.162 -13.002  1.00 25.00           C
ATOM     78  CA  LEU    78     -61.403   3.749 -12.457  1.00 25.00           C
ATOM     79  CA  LYS    79     -59.706   3.996 -15.883  1.00 25.00           C
ATOM     80  CA  ALA    80     -58.436   7.506 -15.027  1.00 25.00           C
ATOM     81  CA  LEU    81     -57.064   6.224 -11.690  1.00 25.00           C
ATOM     82  CA  ALA    82     -55.301   3.342 -13.494  1.00 25.00           C
ATOM     83  CA  ARG    83     -53.145   0.226 -14.092  1.00 25.00           C
ATOM     84  CA  GLY    84     -55.519  -1.845 -12.063  1.00 25.00           C
ATOM     85  CA  GLY    85     -57.927  -2.659 -14.951  1.00 25.00           C
ATOM     86  CA  LYS    86     -58.415  -3.972 -18.486  1.00 25.00           C
ATOM     87  CA  ARG    87     -59.427  -7.258 -16.858  1.00 25.00           C
ATOM     88  CA  PHE    88     -59.257 -10.252 -19.104  1.00 25.00           C
ATOM     89  CA  ASP    89     -57.583 -12.882 -21.251  1.00 25.00           C
ATOM     90  CA  LEU    90     -56.937 -10.157 -23.865  1.00 25.00           C
ATOM     91  CA  ASN    91     -54.610 -10.945 -26.791  1.00 25.00           C
ATOM     92  CA  ASN    92     -53.314  -9.252 -30.010  1.00 25.00           C
ATOM     93  CA  ARG    93     -51.411  -6.353 -31.594  1.00 25.00           C
ATOM     94  CA  PHE    94     -53.798  -3.418 -32.008  1.00 25.00           C
ATOM     95  CA  LYS    95     -51.334  -0.586 -32.471  1.00 25.00           C
ATOM     96  CA  GLY    96     -51.089   3.186 -31.920  1.00 25.00           C
ATOM     97  CA  GLU    97     -53.353   4.101 -29.022  1.00 25.00           C
ATOM     98  CA  VAL    98     -55.451   4.953 -25.944  1.00 25.00           C
ATOM     99  CA  THR    99     -53.434   6.428 -23.014  1.00 25.00           C
ATOM    100  CA  PRO   100     -53.925  10.208 -22.556  1.00 25.00           C
ATOM    101  CA  GLU   101     -57.284   9.825 -24.355  1.00 25.00           C
ATOM    102  CA  GLU   102     -58.759   8.077 -21.283  1.00 25.00           C
ATOM    103  CA  GLN   103     -57.482  10.901 -19.033  1.00 25.00           C
ATOM    104  CA  ALA   104     -59.045  13.502 -21.369  1.00 25.00           C
ATOM    105  CA  ILE   105     -62.374  11.610 -21.291  1.00 25.00           C
ATOM    106  CA  ALA   106     -62.249  11.500 -17.464  1.00 25.00           C
ATOM    107  CA  GLN   107     -61.558  15.265 -17.354  1.00 25.00           C
ATOM    108  CA  ASN   108     -59.527  15.569 -14.140  1.00 25.00           C
ATOM    109  CA  HIS   109     -60.850  13.393 -11.263  1.00 25.00           C
ATOM    110  CA  PRO   110     -61.019  14.937  -7.790  1.00 25.00           C
ATOM    111  CA  PHE   111     -64.330  15.792  -6.067  1.00 25.00           C
ATOM    112  CA  VAL   112     -64.401  19.190  -7.831  1.00 25.00           C
ATOM    113  CA  GLN   113     -63.748  17.483 -11.197  1.00 25.00           C
ATOM    114  CA  GLN   114     -66.589  15.005 -10.519  1.00 25.00           C
ATOM    115  CA  ALA   115     -68.938  17.900  -9.644  1.00 25.00           C
ATOM    116  CA  LEU   116     -67.965  19.700 -12.881  1.00 25.00           C
ATOM    117  CA  GLN   117     -68.638  16.508 -14.887  1.00 25.00           C
ATOM    118  CA  GLN   118     -72.060  16.144 -13.208  1.00 25.00           C
ATOM    119  CA  GLN   119     -72.884  19.790 -14.041  1.00 25.00           C
ATOM    120  CA  SER   120     -71.859  19.216 -17.686  1.00 25.00           C
ATOM    121  CA  ALA   121     -74.076  16.097 -17.843  1.00 25.00           C
ATOM    122  CA  GLN   122     -77.015  18.083 -16.398  1.00 25.00           C
ATOM    123  CA  ALA   123     -76.461  20.840 -18.998  1.00 25.00           C
ATOM    124  CA  ALA   124     -76.399  18.223 -21.795  1.00 25.00           C
ATOM    125  CA  ALA   125     -79.658  16.704 -20.479  1.00 25.00           C
ATOM    126  CA  GLU   126     -81.272  20.175 -20.394  1.00 25.00           C
ATOM    127  CA  THR   127     -80.136  20.818 -23.995  1.00 25.00           C
ATOM    128  CA  LEU   128     -81.601  17.451 -25.084  1.00 25.00           C
ATOM    129  CA  SER   129     -84.913  18.305 -23.361  1.00 25.00           C
ATOM    130  CA  VAL   130     -84.982  21.704 -25.126  1.00 25.00           C
ATOM    131  CA  GLU   131     -84.330  19.997 -28.491  1.00 25.00           C
ATOM    132  CA  ALA   132     -87.170  17.519 -27.812  1.00 25.00           C
ATOM    133  CA  GLU   133     -89.520  20.414 -26.938  1.00 25.00           C
ATOM    134  CA  ALA   134     -88.547  22.214 -30.175  1.00 25.00           C
ATOM    135  CA  ALA   135     -89.220  19.021 -32.181  1.00 25.00           C
ATOM    136  CA  GLU   136     -92.643  18.658 -30.502  1.00 25.00           C
ATOM    137  CA  SER   137     -92.367  14.993 -31.508  1.00 25.00           C
ATOM    138  CA  SER   138     -90.447  13.098 -34.150  1.00 25.00           C
ATOM    139  CA  ALA   139     -88.465  10.710 -36.278  1.00 25.00           C
ATOM    140  CA  ALA   140     -85.462   8.539 -37.077  1.00 25.00           C
ATOM    141  CA  GLU   141     -81.974   7.174 -37.291  1.00 25.00           C
TER
END
