
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  116 , name T0360TS168_4
# Molecule2: number of CA atoms  116 (  917),  selected  116 , name T0360.pdb
# PARAMETERS: T0360TS168_4.T0360.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        29 - 68          4.99    18.01
  LONGEST_CONTINUOUS_SEGMENT:    40        35 - 74          4.97    17.78
  LONGEST_CONTINUOUS_SEGMENT:    40        36 - 75          4.77    17.84
  LONGEST_CONTINUOUS_SEGMENT:    40        45 - 84          4.97    16.93
  LONGEST_CONTINUOUS_SEGMENT:    40        46 - 85          4.90    17.00
  LONGEST_CONTINUOUS_SEGMENT:    40        47 - 86          4.85    17.08
  LCS_AVERAGE:     29.70

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18         1 - 18          1.96    43.81
  LONGEST_CONTINUOUS_SEGMENT:    18         2 - 19          1.99    39.96
  LONGEST_CONTINUOUS_SEGMENT:    18        58 - 75          1.78    17.41
  LONGEST_CONTINUOUS_SEGMENT:    18        59 - 76          1.82    17.34
  LCS_AVERAGE:     11.24

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16         3 - 18          0.84    39.56
  LCS_AVERAGE:      8.33

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     M       1     M       1      3   18   26     3    3    3    5    7   11   15   17   18   19   23   28   30   34   36   36   40   41   41   43 
LCS_GDT     T       2     T       2      3   18   27     3    3    3    5    9   16   16   17   18   20   24   25   30   32   34   35   40   41   41   43 
LCS_GDT     Q       3     Q       3     16   18   27    14   15   15   16   16   16   17   17   18   20   24   25   29   30   34   35   36   37   39   40 
LCS_GDT     E       4     E       4     16   18   27    14   15   15   16   16   16   17   17   18   20   21   23   25   27   28   31   32   34   37   40 
LCS_GDT     T       5     T       5     16   18   27    14   15   15   16   16   16   17   17   18   18   19   23   24   26   27   31   32   34   38   40 
LCS_GDT     A       6     A       6     16   18   27    14   15   15   16   16   16   17   17   18   20   24   25   30   32   34   36   40   41   41   43 
LCS_GDT     L       7     L       7     16   18   27    14   15   15   16   16   16   17   17   18   20   24   25   29   30   34   35   36   37   40   42 
LCS_GDT     G       8     G       8     16   18   27    14   15   15   16   16   16   17   17   18   20   21   23   25   27   29   31   32   35   38   40 
LCS_GDT     A       9     A       9     16   18   27    14   15   15   16   16   16   17   17   18   20   24   25   29   30   34   36   40   41   41   43 
LCS_GDT     A      10     A      10     16   18   27    14   15   15   16   16   16   17   19   21   23   26   28   30   34   36   37   40   41   41   43 
LCS_GDT     L      11     L      11     16   18   27    14   15   15   16   16   16   17   17   18   20   24   25   28   30   34   35   36   41   41   43 
LCS_GDT     K      12     K      12     16   18   29    14   15   15   16   16   16   17   17   18   20   24   25   29   30   34   35   40   41   41   43 
LCS_GDT     S      13     S      13     16   18   29    14   15   15   16   16   16   17   19   21   23   26   30   31   34   36   38   40   41   43   48 
LCS_GDT     A      14     A      14     16   18   29    14   15   15   16   16   16   17   19   21   23   26   28   30   34   36   37   40   41   42   46 
LCS_GDT     V      15     V      15     16   18   29    14   15   15   16   16   16   17   17   18   20   24   25   30   34   36   37   40   41   42   44 
LCS_GDT     Q      16     Q      16     16   18   39    14   15   15   16   16   16   17   19   21   23   26   30   33   34   36   38   40   42   44   50 
LCS_GDT     T      17     T      17     16   18   39     3   15   15   16   16   17   18   19   21   24   29   31   33   36   37   42   45   48   52   55 
LCS_GDT     M      18     M      18     16   18   39     3    4    7   16   16   17   18   19   21   25   29   31   33   36   39   43   46   50   54   59 
LCS_GDT     S      19     S      19     14   18   39     3   12   15   16   16   17   18   20   24   27   29   31   33   36   42   46   49   53   59   61 
LCS_GDT     K      20     K      20     14   16   39    13   13   15   16   16   17   18   19   24   26   28   31   33   36   37   39   41   47   50   51 
LCS_GDT     K      21     K      21     14   16   39    13   13   15   16   16   17   18   19   21   26   28   30   33   36   37   40   43   48   51   54 
LCS_GDT     K      22     K      22     14   16   39    13   13   15   16   16   17   19   20   24   27   29   35   38   43   50   52   55   58   62   66 
LCS_GDT     Q      23     Q      23     14   16   39    13   13   15   16   16   17   18   20   24   27   29   35   38   40   49   52   55   58   62   66 
LCS_GDT     T      24     T      24     14   16   39    13   13   15   16   16   17   19   20   24   27   29   35   38   41   44   46   49   54   60   66 
LCS_GDT     E      25     E      25     14   16   39    13   13   15   16   16   17   18   20   25   27   32   35   38   47   50   53   56   59   65   67 
LCS_GDT     M      26     M      26     14   16   39    13   13   15   16   16   17   18   25   31   35   38   42   45   49   53   55   58   61   65   68 
LCS_GDT     I      27     I      27     14   16   39    13   13   15   16   16   17   18   24   30   34   38   42   45   49   53   55   58   61   65   68 
LCS_GDT     A      28     A      28     14   16   39    13   13   15   16   16   17   18   20   24   30   32   39   44   48   51   55   58   61   65   68 
LCS_GDT     D      29     D      29     14   16   40    13   13   15   16   16   17   18   25   31   35   38   43   46   49   53   55   58   61   65   68 
LCS_GDT     H      30     H      30     14   16   40    13   13   15   18   21   23   26   30   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     I      31     I      31     14   16   40    13   13   15   16   16   17   21   29   32   35   38   43   46   49   53   55   58   61   65   68 
LCS_GDT     Y      32     Y      32     14   16   40    13   13   15   16   16   17   18   20   24   28   33   39   45   49   51   54   57   61   65   68 
LCS_GDT     G      33     G      33      4   15   40     3    5    6    8   11   14   17   20   24   31   38   41   45   49   51   55   58   61   65   68 
LCS_GDT     K      34     K      34      4    8   40     3    3    4    5    5   11   21   29   32   35   38   43   46   49   53   55   58   61   65   68 
LCS_GDT     Y      35     Y      35      7    8   40     6    7    7    7    8   11   13   17   31   35   38   43   46   49   53   55   58   61   65   68 
LCS_GDT     D      36     D      36      7    8   40     6    7    7    9   13   14   16   18   22   28   34   39   45   49   51   54   58   61   65   68 
LCS_GDT     V      37     V      37      7    8   40     6    7    7   16   16   17   18   19   24   27   32   37   41   46   49   52   57   61   65   68 
LCS_GDT     F      38     F      38      7    8   40     6    7    7    9   14   17   18   20   24   28   34   39   45   49   51   54   58   61   65   68 
LCS_GDT     K      39     K      39      7    8   40     6    7    7    7    9   11   13   18   24   27   33   38   43   47   50   54   57   61   65   68 
LCS_GDT     R      40     R      40      7    8   40     6    7    7    7   10   16   19   21   24   28   31   36   41   43   47   51   54   59   61   64 
LCS_GDT     F      41     F      41      7    8   40     6    7    7    7   11   16   19   21   24   27   29   32   37   42   47   48   53   56   58   63 
LCS_GDT     K      42     K      42      5    5   40     4    5    5    9   11   16   19   21   24   28   33   38   42   47   50   53   57   61   65   68 
LCS_GDT     P      43     P      43      5    5   40     4    5    5    8   10   16   19   21   24   28   34   39   43   47   50   54   57   61   65   68 
LCS_GDT     L      44     L      44      5    5   40     0    5   11   12   13   13   19   21   24   28   34   39   43   47   50   54   57   61   65   68 
LCS_GDT     A      45     A      45      3    5   40     3    3    5    6    9   13   17   21   24   28   33   38   42   46   49   53   57   61   65   68 
LCS_GDT     L      46     L      46      3    6   40     3    3    3    5    7    9   13   18   22   26   31   36   41   46   49   52   56   60   64   68 
LCS_GDT     G      47     G      47      3   13   40     3    3    3    6   11   17   23   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     I      48     I      48      8   14   40     8   14   18   20   21   23   26   30   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     D      49     D      49      8   14   40     8    8   11   16   20   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     Q      50     Q      50      8   14   40     8    8   11   12   13   16   19   26   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     D      51     D      51      8   14   40     8    8   11   15   19   23   25   28   31   34   37   40   45   49   51   55   58   61   65   68 
LCS_GDT     L      52     L      52      8   14   40     8    8   11   17   20   23   25   28   33   35   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     I      53     I      53      8   14   40     8   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A      54     A      54      8   14   40     8    8   11   12   13   16   19   25   31   34   36   40   45   49   51   54   57   61   65   68 
LCS_GDT     A      55     A      55      8   14   40     8    8   11   13   19   22   25   27   31   34   36   39   43   47   49   54   57   61   65   68 
LCS_GDT     L      56     L      56      5   14   40     4    4    6   12   15   20   22   25   29   31   35   38   41   46   49   52   57   61   65   68 
LCS_GDT     P      57     P      57      5   14   40     4    4    6   10   15   20   22   25   30   34   36   39   42   47   49   52   57   61   65   68 
LCS_GDT     Q      58     Q      58      5   18   40     4    6   11   12   19   22   25   28   33   35   38   40   45   49   51   54   57   61   65   68 
LCS_GDT     Y      59     Y      59      5   18   40     4    5   11   14   20   23   25   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     D      60     D      60     15   18   40     3    4   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A      61     A      61     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A      62     A      62     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     L      63     L      63     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     I      64     I      64     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A      65     A      65     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     R      66     R      66     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     V      67     V      67     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     L      68     L      68     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A      69     A      69     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     N      70     N      70     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     H      71     H      71     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     C      72     C      72     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     R      73     R      73     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     R      74     R      74     15   18   40    14   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     P      75     P      75     10   18   40     9    9    9   10   19   22   25   27   30   35   38   43   46   49   53   55   58   61   65   68 
LCS_GDT     R      76     R      76     10   18   40     9    9    9   10   10   10   15   26   29   33   37   42   47   49   53   55   58   61   65   68 
LCS_GDT     Y      77     Y      77     10   11   40     9    9   11   12   14   18   25   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     L      78     L      78     10   11   40     9    9    9   11   17   22   26   30   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     K      79     K      79     10   11   40     9   16   18   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A      80     A      80     10   11   40     9    9   11   13   14   14   18   24   31   35   39   42   47   48   53   55   58   61   64   68 
LCS_GDT     L      81     L      81     10   11   40     9    9    9   10   10   10   11   12   13   15   34   39   42   46   51   54   57   60   64   68 
LCS_GDT     A      82     A      82     10   11   40     9    9    9   10   11   17   22   30   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     R      83     R      83     10   11   40     3    4    8   13   19   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     G      84     G      84      3    6   40     3    3    4    8   14   18   25   30   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     G      85     G      85      3    6   40     3    3    4    5    6   13   18   23   31   35   38   42   47   47   51   54   57   61   64   68 
LCS_GDT     K      86     K      86      3    6   40     3    3    4    5    9   14   18   23   30   34   36   41   42   47   51   54   57   60   64   66 
LCS_GDT     R      87     R      87      3    6   32     3    3    4    5    9   11   15   20   25   31   35   39   40   45   47   51   54   58   64   66 
LCS_GDT     F      88     F      88      3    6   32     3    3    4    5    6   11   16   20   26   31   35   39   40   45   48   52   57   60   64   66 
LCS_GDT     D      89     D      89      3    6   32     3    3    3    5    6   11   15   19   24   27   31   35   38   42   47   51   55   58   62   66 
LCS_GDT     L      90     L      90      5    7   28     1    4    5    6    9   14   19   21   26   30   32   35   38   44   48   52   56   58   64   66 
LCS_GDT     N      91     N      91      5    7   25     0    4    5    7   10   15   19   21   25   30   32   35   38   44   48   52   56   60   64   66 
LCS_GDT     N      92     N      92      5   11   25     3    4    5    7   10   14   17   19   23   27   29   35   38   44   47   51   54   56   60   66 
LCS_GDT     R      93     R      93      5   11   25     3    5    7    8   11   14   17   19   23   27   29   35   38   44   48   52   56   60   64   66 
LCS_GDT     F      94     F      94      5   11   25     3    4    5    7    9   11   15   18   23   27   31   36   43   46   53   55   58   61   64   67 
LCS_GDT     K      95     K      95      5   11   25     3    4    7    8   11   14   17   19   23   27   29   35   38   44   48   52   56   60   64   66 
LCS_GDT     G      96     G      96      5   11   25     3    5    7    8   11   15   19   22   26   30   32   35   41   47   51   54   57   61   64   67 
LCS_GDT     E      97     E      97      5   11   25     3    5    7    8   11   15   19   22   26   30   37   42   47   48   53   55   58   61   64   68 
LCS_GDT     V      98     V      98      5   11   25     3    5    7    8   11   15   19   27   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     T      99     T      99      9   11   25     3    4   10   13   14   15   20   26   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     P     100     P     100      9   11   25     8    9   11   13   18   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     E     101     E     101      9   11   25     8    9   11   15   18   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     E     102     E     102      9   11   25     8    9   11   13   18   22   26   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     Q     103     Q     103      9   10   25     8    9   11   19   20   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A     104     A     104      9   10   25     8    9   11   20   21   23   27   31   32   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     I     105     I     105      9   10   25     8    9   11   13   14   15   21   25   30   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     A     106     A     106      9   10   25     8    9   11   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     Q     107     Q     107      9   10   25     8    9   11   13   14   20   23   27   29   33   37   42   47   49   53   55   58   61   64   68 
LCS_GDT     N     108     N     108      3   10   25     3    7   12   17   21   23   27   31   32   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     H     109     H     109      3    6   25     3    3    7   20   21   23   27   31   33   36   39   43   47   49   53   55   58   61   65   68 
LCS_GDT     P     110     P     110      4    7   25     4    4    7   11   13   19   27   31   32   36   39   43   47   49   53   55   58   61   64   68 
LCS_GDT     F     111     F     111      4    7   25     4    4    7   11   12   13   18   22   26   33   37   42   47   47   50   54   57   59   64   66 
LCS_GDT     V     112     V     112      5    7   25     4    5    7    7    7    9    9   10   13   15   18   21   33   36   39   44   50   53   57   61 
LCS_GDT     Q     113     Q     113      5    7   25     8    9   11   12   14   14   15   18   22   25   29   35   38   40   45   49   53   56   58   64 
LCS_GDT     Q     114     Q     114      5    7   21     4    5    7    7    7    9    9   10   12   17   19   23   29   35   40   44   47   53   55   59 
LCS_GDT     A     115     A     115      5    7   19     4    5    7    7    7    9    9   10   12   15   15   16   16   17   18   19   20   24   37   45 
LCS_GDT     L     116     L     116      5    7   19     3    5    7    7    7    9    9   10   13   15   16   16   16   17   18   22   29   35   38   45 
LCS_AVERAGE  LCS_A:  16.43  (   8.33   11.24   29.70 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     16     18     20     21     23     27     31     33     36     39     43     47     49     53     55     58     61     65     68 
GDT PERCENT_CA  12.07  13.79  15.52  17.24  18.10  19.83  23.28  26.72  28.45  31.03  33.62  37.07  40.52  42.24  45.69  47.41  50.00  52.59  56.03  58.62
GDT RMS_LOCAL    0.24   0.55   0.72   0.93   1.10   1.41   2.21   2.56   2.85   2.96   3.33   3.79   4.10   4.33   4.65   4.86   5.19   5.46   5.95   6.09
GDT RMS_ALL_CA  16.38  16.45  16.55  16.57  16.53  16.73  16.54  16.66  16.83  16.68  16.78  16.96  16.90  16.94  17.05  17.09  17.21  17.26  17.19  17.13

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         44.793
LGA    T       2      T       2         45.467
LGA    Q       3      Q       3         44.938
LGA    E       4      E       4         43.552
LGA    T       5      T       5         42.557
LGA    A       6      A       6         38.730
LGA    L       7      L       7         35.895
LGA    G       8      G       8         35.580
LGA    A       9      A       9         34.106
LGA    A      10      A      10         30.296
LGA    L      11      L      11         29.044
LGA    K      12      K      12         29.914
LGA    S      13      S      13         27.569
LGA    A      14      A      14         25.105
LGA    V      15      V      15         25.670
LGA    Q      16      Q      16         26.938
LGA    T      17      T      17         24.220
LGA    M      18      M      18         23.777
LGA    S      19      S      19         24.421
LGA    K      20      K      20         25.345
LGA    K      21      K      21         24.933
LGA    K      22      K      22         19.488
LGA    Q      23      Q      23         16.889
LGA    T      24      T      24         18.427
LGA    E      25      E      25         17.066
LGA    M      26      M      26         10.993
LGA    I      27      I      27         10.573
LGA    A      28      A      28         13.490
LGA    D      29      D      29         11.557
LGA    H      30      H      30          6.190
LGA    I      31      I      31          8.085
LGA    Y      32      Y      32         13.429
LGA    G      33      G      33         13.759
LGA    K      34      K      34          9.233
LGA    Y      35      Y      35          9.774
LGA    D      36      D      36         13.608
LGA    V      37      V      37         13.898
LGA    F      38      F      38         12.758
LGA    K      39      K      39         17.637
LGA    R      40      R      40         20.704
LGA    F      41      F      41         19.017
LGA    K      42      K      42         15.562
LGA    P      43      P      43         12.127
LGA    L      44      L      44         11.608
LGA    A      45      A      45         10.826
LGA    L      46      L      46         10.172
LGA    G      47      G      47          3.909
LGA    I      48      I      48          4.202
LGA    D      49      D      49          1.661
LGA    Q      50      Q      50          5.403
LGA    D      51      D      51          8.564
LGA    L      52      L      52          6.705
LGA    I      53      I      53          3.529
LGA    A      54      A      54         10.286
LGA    A      55      A      55         12.600
LGA    L      56      L      56         12.465
LGA    P      57      P      57         12.048
LGA    Q      58      Q      58          8.541
LGA    Y      59      Y      59          3.978
LGA    D      60      D      60          2.392
LGA    A      61      A      61          3.487
LGA    A      62      A      62          3.756
LGA    L      63      L      63          2.863
LGA    I      64      I      64          1.650
LGA    A      65      A      65          1.848
LGA    R      66      R      66          1.946
LGA    V      67      V      67          1.119
LGA    L      68      L      68          0.467
LGA    A      69      A      69          0.973
LGA    N      70      N      70          2.195
LGA    H      71      H      71          2.222
LGA    C      72      C      72          1.635
LGA    R      73      R      73          2.244
LGA    R      74      R      74          3.768
LGA    P      75      P      75          7.681
LGA    R      76      R      76          6.108
LGA    Y      77      Y      77          3.447
LGA    L      78      L      78          5.240
LGA    K      79      K      79          3.038
LGA    A      80      A      80          5.540
LGA    L      81      L      81          8.398
LGA    A      82      A      82          5.904
LGA    R      83      R      83          1.899
LGA    G      84      G      84          4.909
LGA    G      85      G      85          6.117
LGA    K      86      K      86          8.143
LGA    R      87      R      87         10.974
LGA    F      88      F      88         10.439
LGA    D      89      D      89         14.430
LGA    L      90      L      90         14.853
LGA    N      91      N      91         15.001
LGA    N      92      N      92         15.209
LGA    R      93      R      93         13.345
LGA    F      94      F      94          9.535
LGA    K      95      K      95         12.912
LGA    G      96      G      96          9.585
LGA    E      97      E      97          7.535
LGA    V      98      V      98          5.216
LGA    T      99      T      99          6.187
LGA    P     100      P     100          2.239
LGA    E     101      E     101          3.050
LGA    E     102      E     102          3.747
LGA    Q     103      Q     103          1.646
LGA    A     104      A     104          3.739
LGA    I     105      I     105          5.167
LGA    A     106      A     106          2.410
LGA    Q     107      Q     107          6.373
LGA    N     108      N     108          3.392
LGA    H     109      H     109          1.368
LGA    P     110      P     110          2.715
LGA    F     111      F     111          7.264
LGA    V     112      V     112         12.804
LGA    Q     113      Q     113         12.311
LGA    Q     114      Q     114         16.181
LGA    A     115      A     115         20.664
LGA    L     116      L     116         21.799

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  116    4.0     31    2.56    26.293    22.325     1.165

LGA_LOCAL      RMSD =  2.561  Number of atoms =   31  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 16.900  Number of atoms =  116 
Std_ALL_ATOMS  RMSD = 15.018  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.621913 * X  +   0.059821 * Y  +   0.780798 * Z  + -73.716431
  Y_new =   0.607689 * X  +   0.665736 * Y  +   0.433024 * Z  +   4.209404
  Z_new =  -0.493901 * X  +   0.743786 * Y  +  -0.450382 * Z  + -17.511398 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.115270   -1.026323  [ DEG:   121.1960    -58.8040 ]
  Theta =   0.516571    2.625022  [ DEG:    29.5973    150.4027 ]
  Phi   =   2.367761   -0.773831  [ DEG:   135.6627    -44.3373 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS168_4                                  
REMARK     2: T0360.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0360TS168_4.T0360.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  116   4.0   31   2.56  22.325    15.02
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS168_4
PFRMAT TS
TARGET T0360
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1     -84.168  17.504   1.264  1.00 25.00           C
ATOM      2  CA  THR     2     -80.411  17.540   1.218  1.00 25.00           C
ATOM      3  CA  GLN     3     -78.829  15.688   4.194  1.00 25.00           C
ATOM      4  CA  GLU     4     -75.376  14.679   5.510  1.00 25.00           C
ATOM      5  CA  THR     5     -76.986  12.064   7.799  1.00 25.00           C
ATOM      6  CA  ALA     6     -78.993  10.679   4.847  1.00 25.00           C
ATOM      7  CA  LEU     7     -75.801  10.472   2.742  1.00 25.00           C
ATOM      8  CA  GLY     8     -74.015   8.627   5.584  1.00 25.00           C
ATOM      9  CA  ALA     9     -76.942   6.172   5.860  1.00 25.00           C
ATOM     10  CA  ALA    10     -76.824   5.568   2.081  1.00 25.00           C
ATOM     11  CA  LEU    11     -73.053   4.931   2.275  1.00 25.00           C
ATOM     12  CA  LYS    12     -73.594   2.454   5.146  1.00 25.00           C
ATOM     13  CA  SER    13     -76.292   0.650   3.113  1.00 25.00           C
ATOM     14  CA  ALA    14     -73.927   0.450   0.107  1.00 25.00           C
ATOM     15  CA  VAL    15     -71.165  -0.977   2.341  1.00 25.00           C
ATOM     16  CA  GLN    16     -73.602  -3.585   3.730  1.00 25.00           C
ATOM     17  CA  THR    17     -74.632  -4.554   0.171  1.00 25.00           C
ATOM     18  CA  MET    18     -72.935  -7.822   1.118  1.00 25.00           C
ATOM     19  CA  SER    19     -73.500 -10.948  -0.977  1.00 25.00           C
ATOM     20  CA  LYS    20     -72.190 -11.930  -4.347  1.00 25.00           C
ATOM     21  CA  LYS    21     -73.190 -15.253  -5.966  1.00 25.00           C
ATOM     22  CA  LYS    22     -76.879 -14.226  -5.853  1.00 25.00           C
ATOM     23  CA  GLN    23     -76.017 -10.864  -7.470  1.00 25.00           C
ATOM     24  CA  THR    24     -74.048 -12.662 -10.219  1.00 25.00           C
ATOM     25  CA  GLU    25     -77.013 -15.005 -10.844  1.00 25.00           C
ATOM     26  CA  MET    26     -79.372 -11.997 -11.076  1.00 25.00           C
ATOM     27  CA  ILE    27     -77.009 -10.303 -13.569  1.00 25.00           C
ATOM     28  CA  ALA    28     -76.891 -13.503 -15.668  1.00 25.00           C
ATOM     29  CA  ASP    29     -80.716 -13.690 -15.644  1.00 25.00           C
ATOM     30  CA  HIS    30     -80.926 -10.029 -16.750  1.00 25.00           C
ATOM     31  CA  ILE    31     -78.447 -10.718 -19.587  1.00 25.00           C
ATOM     32  CA  TYR    32     -80.518 -13.744 -20.694  1.00 25.00           C
ATOM     33  CA  GLY    33     -79.289 -17.193 -21.658  1.00 25.00           C
ATOM     34  CA  LYS    34     -75.918 -15.407 -22.011  1.00 25.00           C
ATOM     35  CA  TYR    35     -72.730 -14.413 -23.886  1.00 25.00           C
ATOM     36  CA  ASP    36     -74.432 -15.171 -27.232  1.00 25.00           C
ATOM     37  CA  VAL    37     -77.448 -13.045 -26.209  1.00 25.00           C
ATOM     38  CA  PHE    38     -75.117 -10.167 -25.232  1.00 25.00           C
ATOM     39  CA  LYS    39     -73.329 -10.436 -28.608  1.00 25.00           C
ATOM     40  CA  ARG    40     -76.700 -10.362 -30.426  1.00 25.00           C
ATOM     41  CA  PHE    41     -77.736  -7.261 -28.432  1.00 25.00           C
ATOM     42  CA  LYS    42     -74.540  -5.569 -29.667  1.00 25.00           C
ATOM     43  CA  PRO    43     -73.927  -1.974 -28.397  1.00 25.00           C
ATOM     44  CA  LEU    44     -73.999  -1.148 -32.119  1.00 25.00           C
ATOM     45  CA  ALA    45     -77.692  -2.018 -32.427  1.00 25.00           C
ATOM     46  CA  LEU    46     -78.416   1.590 -33.304  1.00 25.00           C
ATOM     47  CA  GLY    47     -76.940   2.718 -29.967  1.00 25.00           C
ATOM     48  CA  ILE    48     -77.249   3.590 -26.293  1.00 25.00           C
ATOM     49  CA  ASP    49     -78.753   1.261 -23.651  1.00 25.00           C
ATOM     50  CA  GLN    50     -79.759   4.283 -21.524  1.00 25.00           C
ATOM     51  CA  ASP    51     -81.393   5.920 -24.577  1.00 25.00           C
ATOM     52  CA  LEU    52     -83.307   2.686 -25.316  1.00 25.00           C
ATOM     53  CA  ILE    53     -84.496   2.529 -21.680  1.00 25.00           C
ATOM     54  CA  ALA    54     -85.656   6.173 -21.875  1.00 25.00           C
ATOM     55  CA  ALA    55     -87.552   5.421 -25.117  1.00 25.00           C
ATOM     56  CA  LEU    56     -90.622   5.820 -22.877  1.00 25.00           C
ATOM     57  CA  PRO    57     -92.913   7.088 -20.052  1.00 25.00           C
ATOM     58  CA  GLN    58     -94.052   3.429 -19.827  1.00 25.00           C
ATOM     59  CA  TYR    59     -90.860   1.424 -19.247  1.00 25.00           C
ATOM     60  CA  ASP    60     -90.238   3.384 -16.000  1.00 25.00           C
ATOM     61  CA  ALA    61     -86.964   5.022 -17.033  1.00 25.00           C
ATOM     62  CA  ALA    62     -85.428   7.515 -14.565  1.00 25.00           C
ATOM     63  CA  LEU    63     -84.137   4.624 -12.410  1.00 25.00           C
ATOM     64  CA  ILE    64     -82.605   2.969 -15.505  1.00 25.00           C
ATOM     65  CA  ALA    65     -80.914   6.268 -16.464  1.00 25.00           C
ATOM     66  CA  ARG    66     -79.518   6.613 -12.915  1.00 25.00           C
ATOM     67  CA  VAL    67     -78.179   3.028 -13.067  1.00 25.00           C
ATOM     68  CA  LEU    68     -76.525   3.763 -16.442  1.00 25.00           C
ATOM     69  CA  ALA    69     -74.923   6.926 -14.995  1.00 25.00           C
ATOM     70  CA  ASN    70     -73.618   4.927 -12.002  1.00 25.00           C
ATOM     71  CA  HIS    71     -72.159   2.292 -14.367  1.00 25.00           C
ATOM     72  CA  CYS    72     -70.455   5.041 -16.418  1.00 25.00           C
ATOM     73  CA  ARG    73     -68.991   6.555 -13.220  1.00 25.00           C
ATOM     74  CA  ARG    74     -67.688   3.114 -12.158  1.00 25.00           C
ATOM     75  CA  PRO    75     -66.090   2.629 -15.603  1.00 25.00           C
ATOM     76  CA  ARG    76     -64.434   6.072 -15.347  1.00 25.00           C
ATOM     77  CA  TYR    77     -63.092   5.196 -11.869  1.00 25.00           C
ATOM     78  CA  LEU    78     -61.700   1.891 -13.212  1.00 25.00           C
ATOM     79  CA  LYS    79     -60.009   3.750 -16.102  1.00 25.00           C
ATOM     80  CA  ALA    80     -58.475   6.243 -13.635  1.00 25.00           C
ATOM     81  CA  LEU    81     -57.182   3.352 -11.479  1.00 25.00           C
ATOM     82  CA  ALA    82     -55.651   1.697 -14.575  1.00 25.00           C
ATOM     83  CA  ARG    83     -54.947   3.156 -18.025  1.00 25.00           C
ATOM     84  CA  GLY    84     -54.777  -0.364 -19.378  1.00 25.00           C
ATOM     85  CA  GLY    85     -58.161  -1.156 -17.936  1.00 25.00           C
ATOM     86  CA  LYS    86     -57.738  -4.864 -18.601  1.00 25.00           C
ATOM     87  CA  ARG    87     -59.831  -7.770 -17.420  1.00 25.00           C
ATOM     88  CA  PHE    88     -61.063 -10.811 -19.422  1.00 25.00           C
ATOM     89  CA  ASP    89     -58.817 -12.628 -21.948  1.00 25.00           C
ATOM     90  CA  LEU    90     -59.269 -10.279 -24.907  1.00 25.00           C
ATOM     91  CA  ASN    91     -57.871 -11.925 -28.073  1.00 25.00           C
ATOM     92  CA  ASN    92     -55.752 -10.490 -30.895  1.00 25.00           C
ATOM     93  CA  ARG    93     -56.492  -8.486 -34.008  1.00 25.00           C
ATOM     94  CA  PHE    94     -58.145  -5.005 -34.083  1.00 25.00           C
ATOM     95  CA  LYS    95     -56.512  -2.570 -36.497  1.00 25.00           C
ATOM     96  CA  GLY    96     -56.183  -0.159 -33.567  1.00 25.00           C
ATOM     97  CA  GLU    97     -55.655   2.436 -30.766  1.00 25.00           C
ATOM     98  CA  VAL    98     -56.918   3.304 -27.276  1.00 25.00           C
ATOM     99  CA  THR    99     -54.311   5.526 -25.661  1.00 25.00           C
ATOM    100  CA  PRO   100     -55.651   8.911 -24.606  1.00 25.00           C
ATOM    101  CA  GLU   101     -59.271   8.653 -25.833  1.00 25.00           C
ATOM    102  CA  GLU   102     -60.266   6.863 -22.596  1.00 25.00           C
ATOM    103  CA  GLN   103     -58.559   9.599 -20.529  1.00 25.00           C
ATOM    104  CA  ALA   104     -60.413  12.294 -22.520  1.00 25.00           C
ATOM    105  CA  ILE   105     -63.734  10.480 -21.931  1.00 25.00           C
ATOM    106  CA  ALA   106     -62.983  10.271 -18.181  1.00 25.00           C
ATOM    107  CA  GLN   107     -62.180  14.015 -18.109  1.00 25.00           C
ATOM    108  CA  ASN   108     -59.658  16.527 -16.801  1.00 25.00           C
ATOM    109  CA  HIS   109     -60.152  14.631 -13.567  1.00 25.00           C
ATOM    110  CA  PRO   110     -61.228  15.463 -10.005  1.00 25.00           C
ATOM    111  CA  PHE   111     -64.373  16.267  -7.972  1.00 25.00           C
ATOM    112  CA  VAL   112     -64.567  19.729  -9.596  1.00 25.00           C
ATOM    113  CA  GLN   113     -64.220  18.149 -13.067  1.00 25.00           C
ATOM    114  CA  GLN   114     -67.011  15.660 -12.240  1.00 25.00           C
ATOM    115  CA  ALA   115     -69.254  18.531 -11.059  1.00 25.00           C
ATOM    116  CA  LEU   116     -68.548  20.448 -14.298  1.00 25.00           C
ATOM    117  CA  GLN   117     -69.415  17.338 -16.357  1.00 25.00           C
ATOM    118  CA  GLN   118     -72.684  16.927 -14.405  1.00 25.00           C
ATOM    119  CA  GLN   119     -73.547  20.606 -15.026  1.00 25.00           C
ATOM    120  CA  SER   120     -72.843  20.165 -18.765  1.00 25.00           C
ATOM    121  CA  ALA   121     -75.089  17.066 -18.847  1.00 25.00           C
ATOM    122  CA  GLN   122     -77.878  19.009 -17.083  1.00 25.00           C
ATOM    123  CA  ALA   123     -77.527  21.860 -19.615  1.00 25.00           C
ATOM    124  CA  ALA   124     -77.726  19.352 -22.504  1.00 25.00           C
ATOM    125  CA  ALA   125     -80.872  17.798 -20.970  1.00 25.00           C
ATOM    126  CA  GLU   126     -82.446  21.271 -20.617  1.00 25.00           C
ATOM    127  CA  THR   127     -81.617  22.045 -24.276  1.00 25.00           C
ATOM    128  CA  LEU   128     -83.196  18.729 -25.360  1.00 25.00           C
ATOM    129  CA  SER   129     -86.340  19.532 -23.327  1.00 25.00           C
ATOM    130  CA  VAL   130     -86.534  22.995 -24.951  1.00 25.00           C
ATOM    131  CA  GLU   131     -86.187  21.415 -28.422  1.00 25.00           C
ATOM    132  CA  ALA   132     -88.979  18.927 -27.596  1.00 25.00           C
ATOM    133  CA  GLU   133     -91.221  21.797 -26.414  1.00 25.00           C
ATOM    134  CA  ALA   134     -90.515  23.715 -29.654  1.00 25.00           C
ATOM    135  CA  ALA   135     -91.382  20.604 -31.713  1.00 25.00           C
ATOM    136  CA  GLU   136     -94.652  20.193 -29.760  1.00 25.00           C
ATOM    137  CA  SER   137     -94.270  16.529 -30.595  1.00 25.00           C
ATOM    138  CA  SER   138     -92.824  13.889 -32.998  1.00 25.00           C
ATOM    139  CA  ALA   139     -90.516  11.648 -35.003  1.00 25.00           C
ATOM    140  CA  ALA   140     -87.977   8.992 -36.121  1.00 25.00           C
ATOM    141  CA  GLU   141     -85.005   6.658 -35.577  1.00 25.00           C
TER
END
