
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  116 , name T0360TS393_1
# Molecule2: number of CA atoms  116 (  917),  selected  116 , name T0360.pdb
# PARAMETERS: T0360TS393_1.T0360.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51        61 - 111         4.99    18.71
  LCS_AVERAGE:     33.07

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19         2 - 20          1.85    34.95
  LONGEST_CONTINUOUS_SEGMENT:    19         3 - 21          1.64    34.68
  LCS_AVERAGE:     11.56

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16         3 - 18          0.98    33.77
  LONGEST_CONTINUOUS_SEGMENT:    16        17 - 32          0.95    29.42
  LCS_AVERAGE:      8.31

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     M       1     M       1      3    4   27     3    3    3    4    7   12   16   17   19   20   20   21   22   23   23   24   29   29   29   33 
LCS_GDT     T       2     T       2      3   19   27     3    3    3    4    6   12   16   17   19   20   23   23   24   25   27   28   29   31   33   34 
LCS_GDT     Q       3     Q       3     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   27   28   29   31   31   34 
LCS_GDT     E       4     E       4     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   27   27   29   31   31   33 
LCS_GDT     T       5     T       5     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   27   28   29   31   31   34 
LCS_GDT     A       6     A       6     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   27   28   30   32   34   37 
LCS_GDT     L       7     L       7     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   27   28   30   32   34   37 
LCS_GDT     G       8     G       8     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   27   28   29   32   34   34 
LCS_GDT     A       9     A       9     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   25   28   30   31   32   35   38 
LCS_GDT     A      10     A      10     16   19   27    14   15   15   16   17   18   19   19   20   21   23   24   27   27   29   31   35   38   39   40 
LCS_GDT     L      11     L      11     16   19   27    14   15   15   16   17   18   19   19   20   21   23   23   24   26   29   30   32   35   39   40 
LCS_GDT     K      12     K      12     16   19   27    14   15   15   16   17   18   19   19   20   21   23   24   27   27   29   31   34   38   39   40 
LCS_GDT     S      13     S      13     16   19   27    14   15   15   16   17   18   19   19   20   23   24   25   28   31   32   34   37   39   41   44 
LCS_GDT     A      14     A      14     16   19   27    14   15   15   16   17   18   19   19   22   23   24   25   28   31   32   34   37   39   41   44 
LCS_GDT     V      15     V      15     16   19   27    14   15   15   16   17   18   19   19   22   23   24   25   28   31   32   34   37   40   46   50 
LCS_GDT     Q      16     Q      16     16   19   27    14   15   15   16   17   18   19   19   22   23   24   25   28   31   32   34   37   39   41   50 
LCS_GDT     T      17     T      17     16   19   27     3   15   15   16   17   18   19   19   22   23   24   25   28   31   32   34   37   40   46   50 
LCS_GDT     M      18     M      18     16   19   27     3   12   14   16   17   18   19   19   22   23   24   25   31   37   41   48   54   55   59   62 
LCS_GDT     S      19     S      19     16   19   27     3   14   14   15   17   18   19   19   22   23   24   26   30   35   37   38   42   47   52   55 
LCS_GDT     K      20     K      20     16   19   27    13   14   15   16   17   18   19   19   22   23   24   26   30   35   37   38   42   46   48   51 
LCS_GDT     K      21     K      21     16   19   27    13   14   14   15   16   17   19   19   22   23   24   25   31   35   42   43   46   52   56   62 
LCS_GDT     K      22     K      22     16   17   27    13   14   14   15   16   16   19   22   25   29   32   35   38   44   48   52   56   59   64   67 
LCS_GDT     Q      23     Q      23     16   17   27    13   14   14   15   16   16   18   22   23   26   27   33   36   40   44   48   56   59   62   65 
LCS_GDT     T      24     T      24     16   17   27    13   14   14   15   16   16   18   19   22   23   27   29   34   40   43   47   54   56   61   65 
LCS_GDT     E      25     E      25     16   17   27    13   14   14   15   16   16   18   21   26   30   32   36   42   46   50   54   57   61   64   67 
LCS_GDT     M      26     M      26     16   17   27    13   14   14   15   16   16   20   25   28   34   36   41   47   50   55   58   60   61   64   67 
LCS_GDT     I      27     I      27     16   17   27    13   14   14   15   16   16   19   23   26   31   34   38   44   48   51   56   60   61   64   67 
LCS_GDT     A      28     A      28     16   17   27    13   14   14   15   16   16   18   19   22   30   30   36   41   47   50   54   57   61   64   67 
LCS_GDT     D      29     D      29     16   17   25    13   14   14   15   16   16   18   24   28   32   34   39   45   50   55   58   60   61   64   67 
LCS_GDT     H      30     H      30     16   17   25    13   14   14   15   16   19   21   25   32   34   38   41   47   50   55   58   60   61   64   67 
LCS_GDT     I      31     I      31     16   17   25    13   14   14   15   16   16   19   25   28   32   34   41   46   50   55   58   60   61   64   67 
LCS_GDT     Y      32     Y      32     16   17   25    13   14   14   15   16   16   18   19   22   23   25   29   34   41   44   46   53   60   63   66 
LCS_GDT     G      33     G      33      4   17   25     3    3    5    8    8   10   11   13   17   24   27   34   41   44   45   50   54   61   63   67 
LCS_GDT     K      34     K      34      4    8   25     3    3    4    6    8   10   11   12   21   28   34   39   41   44   50   54   57   61   63   67 
LCS_GDT     Y      35     Y      35      7    8   25     6    7    7    7    7    9   11   14   16   17   19   21   23   25   30   39   45   48   50   55 
LCS_GDT     D      36     D      36      7    8   25     6    7    7    7    8   10   11   12   15   17   22   25   28   31   32   34   37   39   41   44 
LCS_GDT     V      37     V      37      7    8   31     6    7    7    7    8   10   11   12   15   17   18   23   27   31   32   34   37   39   41   44 
LCS_GDT     F      38     F      38      7    8   31     6    7    7    7   11   11   13   16   18   21   23   25   28   31   32   34   37   39   41   44 
LCS_GDT     K      39     K      39      7    8   31     6    7    7   10   11   11   12   16   18   21   23   25   28   31   32   34   37   39   41   44 
LCS_GDT     R      40     R      40      7    8   31     6    7    7    7    9   11   16   17   19   21   23   25   28   31   32   34   37   39   41   44 
LCS_GDT     F      41     F      41      7    8   31     6    7    7    7    9   12   16   18   19   21   23   25   26   31   32   34   37   39   41   44 
LCS_GDT     K      42     K      42      4    8   31     3    4    4    7    9   12   16   18   19   21   23   25   28   31   32   34   37   39   41   44 
LCS_GDT     P      43     P      43      4    8   31     3    4    4    7    9   12   16   18   19   21   23   25   28   31   32   34   37   39   41   44 
LCS_GDT     L      44     L      44      4    8   31     3    3    4    6    9   12   16   18   19   21   23   25   28   31   32   34   43   45   50   53 
LCS_GDT     A      45     A      45      4    8   31     3    3    4    5    9   11   16   18   19   21   23   25   28   31   37   40   45   48   55   61 
LCS_GDT     L      46     L      46      3   11   31     3    3    4    7    9   11   14   16   18   21   23   25   34   38   44   51   55   61   63   67 
LCS_GDT     G      47     G      47      3   12   31     3    3    4   11   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     I      48     I      48      9   14   31    15   16   18   20   21   23   27   31   35   37   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     D      49     D      49      9   14   31     8    9   10   11   21   26   28   32   35   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     Q      50     Q      50      9   14   34     8    9   10   11   13   14   22   24   33   36   42   43   46   48   52   57   60   61   64   67 
LCS_GDT     D      51     D      51      9   14   34     8    9   10   11   13   14   14   18   21   25   30   36   40   45   51   51   55   60   63   65 
LCS_GDT     L      52     L      52      9   14   34     8    9   10   12   15   16   19   21   24   27   31   36   43   48   51   51   55   60   63   65 
LCS_GDT     I      53     I      53      9   14   34     8    9   10   14   15   17   19   24   27   32   37   41   46   48   51   54   56   60   63   66 
LCS_GDT     A      54     A      54      9   14   34     8    9   10   11   13   14   14   16   18   21   23   29   30   32   36   44   50   54   57   59 
LCS_GDT     A      55     A      55      9   14   34     8    9   10   11   13   14   19   21   24   25   27   29   30   32   34   37   40   46   50   53 
LCS_GDT     L      56     L      56      9   14   34     3    9   10   11   13   14   19   21   24   25   27   28   30   32   32   37   40   46   50   53 
LCS_GDT     P      57     P      57      4   14   34     3    3    4   10   10   13   19   21   24   25   27   29   30   34   40   43   49   54   57   58 
LCS_GDT     Q      58     Q      58      4   14   34     3    5   10   11   13   14   16   18   19   24   26   27   30   32   37   42   47   53   57   58 
LCS_GDT     Y      59     Y      59      4   14   34     3    4    6   11   13   14   19   21   24   31   33   39   46   48   51   51   55   60   62   64 
LCS_GDT     D      60     D      60      4   16   34     3    4    5    9   15   20   24   32   35   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A      61     A      61     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A      62     A      62     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     L      63     L      63     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     I      64     I      64     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A      65     A      65     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     R      66     R      66     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     V      67     V      67     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     L      68     L      68     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A      69     A      69     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     N      70     N      70     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     H      71     H      71     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     C      72     C      72     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     R      73     R      73     14   16   51    15   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     R      74     R      74     14   16   51    15   16   18   20   24   26   28   32   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     P      75     P      75      9   16   51     9    9    9    9   11   18   22   25   28   33   38   41   47   50   55   58   60   61   64   67 
LCS_GDT     R      76     R      76      9   16   51     9    9    9    9    9   11   19   23   25   27   35   41   47   50   55   58   60   61   64   67 
LCS_GDT     Y      77     Y      77      9   10   51     9    9    9    9   12   23   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     L      78     L      78      9   10   51     9    9    9    9   12   16   25   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     K      79     K      79      9   10   51     9   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A      80     A      80      9   10   51     9    9    9    9   10   13   13   20   25   28   39   43   47   50   55   58   60   61   64   67 
LCS_GDT     L      81     L      81      9   10   51     9    9    9    9    9   10   10   12   12   24   31   38   40   49   54   58   59   60   64   67 
LCS_GDT     A      82     A      82      9   10   51     9    9    9    9   11   19   26   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     R      83     R      83      4   10   51     3    7   14   19   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     G      84     G      84      4    6   51     3    3    4    6   14   20   28   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     G      85     G      85      5    6   51     3    4    5    8   13   15   27   33   36   39   42   43   46   49   55   58   60   61   64   67 
LCS_GDT     K      86     K      86      5    6   51     3    4    8   14   20   25   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     R      87     R      87      5    6   51     3    4    5    8   16   22   28   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     F      88     F      88      5    6   51     0    3    5    8   14   20   27   33   36   39   41   43   47   50   55   58   60   61   64   67 
LCS_GDT     D      89     D      89      5    6   51     3    4    9   12   13   15   18   23   26   31   34   39   47   50   55   58   60   61   64   67 
LCS_GDT     L      90     L      90      3    7   51     3    3    5   10   14   16   20   25   28   32   36   41   47   50   55   58   60   61   64   67 
LCS_GDT     N      91     N      91      3    7   51     3    3    5    8   12   16   20   25   28   32   36   41   47   50   55   58   60   61   64   67 
LCS_GDT     N      92     N      92      3   12   51     3    5    8    9   12   14   19   24   27   32   34   36   45   49   53   57   60   61   64   67 
LCS_GDT     R      93     R      93      4   12   51     3    5    8    9   12   14   19   25   28   32   34   40   46   50   55   58   60   61   64   67 
LCS_GDT     F      94     F      94      4   12   51     3    4    7    7   11   14   19   25   32   35   38   41   47   50   55   58   60   61   64   67 
LCS_GDT     K      95     K      95      4   12   51     3    5    8    9   12   14   19   25   28   32   34   37   42   49   55   58   60   61   64   67 
LCS_GDT     G      96     G      96      4   12   51     3    5    8    9   12   14   19   25   28   32   34   41   47   50   55   58   60   61   64   67 
LCS_GDT     E      97     E      97      4   12   51     3    5    8    9   12   16   20   27   34   37   39   41   47   50   55   58   60   61   64   67 
LCS_GDT     V      98     V      98      4   12   51     3    5    8    9   12   16   28   31   35   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     T      99     T      99      9   13   51     3    9    9   15   18   25   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     P     100     P     100      9   13   51     8    9   14   19   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     E     101     E     101      9   13   51     8    9   10   18   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     E     102     E     102      9   13   51     8    9   10   17   22   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     Q     103     Q     103      9   13   51     8    9   16   19   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A     104     A     104      9   13   51     8    9   16   20   24   26   29   32   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     I     105     I     105      9   13   51     8    9    9   12   17   17   28   32   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     A     106     A     106      9   13   51     8    9   16   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     Q     107     Q     107      9   13   51     8    9    9   18   20   23   27   32   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     N     108     N     108      4   13   51     3   13   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     H     109     H     109      4   13   51     3   16   18   20   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     P     110     P     110      4   13   51     4    4   12   19   24   26   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     F     111     F     111      4   13   51     4    4    7   14   18   24   29   33   36   39   42   43   47   50   55   58   60   61   64   67 
LCS_GDT     V     112     V     112      5    7   27     4    5    7    7    7    7    8    9   11   12   13   15   30   43   46   47   56   60   62   65 
LCS_GDT     Q     113     Q     113      5    7   26     4    5    7    7    7    7    9   14   22   28   34   36   45   49   50   54   57   60   63   66 
LCS_GDT     Q     114     Q     114      5    7   26     4    5    7    7    7    7    8   10   17   23   27   32   37   47   49   53   57   60   62   65 
LCS_GDT     A     115     A     115      5    7   20     4    5    7    7    7    7    8    9   10   13   13   17   21   27   29   40   41   45   53   56 
LCS_GDT     L     116     L     116      5    7   17     3    5    7    7    7    7    8    9    9   11   13   14   16   16   21   23   33   34   36   38 
LCS_AVERAGE  LCS_A:  17.65  (   8.31   11.56   33.07 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     18     20     24     26     29     33     36     39     42     43     47     50     55     58     60     61     64     67 
GDT PERCENT_CA  12.93  13.79  15.52  17.24  20.69  22.41  25.00  28.45  31.03  33.62  36.21  37.07  40.52  43.10  47.41  50.00  51.72  52.59  55.17  57.76
GDT RMS_LOCAL    0.24   0.44   0.60   1.00   1.65   1.79   2.10   2.59   2.71   2.93   3.22   3.30   4.21   4.41   4.89   5.16   5.32   5.40   5.79   6.06
GDT RMS_ALL_CA  18.63  18.70  18.68  18.56  18.35  18.38  18.40  18.58  18.49  18.47  18.68  18.66  18.74  18.70  18.84  19.02  18.96  19.03  19.07  19.19

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         52.926
LGA    T       2      T       2         49.500
LGA    Q       3      Q       3         48.884
LGA    E       4      E       4         44.766
LGA    T       5      T       5         45.110
LGA    A       6      A       6         43.562
LGA    L       7      L       7         38.594
LGA    G       8      G       8         36.658
LGA    A       9      A       9         37.577
LGA    A      10      A      10         33.808
LGA    L      11      L      11         29.758
LGA    K      12      K      12         30.889
LGA    S      13      S      13         30.285
LGA    A      14      A      14         25.738
LGA    V      15      V      15         24.688
LGA    Q      16      Q      16         27.057
LGA    T      17      T      17         23.715
LGA    M      18      M      18         21.320
LGA    S      19      S      19         25.908
LGA    K      20      K      20         27.539
LGA    K      21      K      21         26.178
LGA    K      22      K      22         19.920
LGA    Q      23      Q      23         19.256
LGA    T      24      T      24         21.235
LGA    E      25      E      25         18.684
LGA    M      26      M      26         13.590
LGA    I      27      I      27         14.699
LGA    A      28      A      28         16.945
LGA    D      29      D      29         14.732
LGA    H      30      H      30         11.814
LGA    I      31      I      31         13.269
LGA    Y      32      Y      32         17.147
LGA    G      33      G      33         17.753
LGA    K      34      K      34         12.365
LGA    Y      35      Y      35         17.097
LGA    D      36      D      36         20.619
LGA    V      37      V      37         18.840
LGA    F      38      F      38         20.290
LGA    K      39      K      39         25.871
LGA    R      40      R      40         27.050
LGA    F      41      F      41         25.203
LGA    K      42      K      42         25.359
LGA    P      43      P      43         21.063
LGA    L      44      L      44         15.907
LGA    A      45      A      45         14.103
LGA    L      46      L      46         10.907
LGA    G      47      G      47          3.829
LGA    I      48      I      48          6.435
LGA    D      49      D      49          5.080
LGA    Q      50      Q      50          5.993
LGA    D      51      D      51         11.545
LGA    L      52      L      52         12.458
LGA    I      53      I      53          9.226
LGA    A      54      A      54         15.027
LGA    A      55      A      55         19.764
LGA    L      56      L      56         19.487
LGA    P      57      P      57         18.460
LGA    Q      58      Q      58         17.582
LGA    Y      59      Y      59         11.183
LGA    D      60      D      60          4.722
LGA    A      61      A      61          3.075
LGA    A      62      A      62          3.738
LGA    L      63      L      63          2.422
LGA    I      64      I      64          0.991
LGA    A      65      A      65          2.109
LGA    R      66      R      66          1.881
LGA    V      67      V      67          1.464
LGA    L      68      L      68          1.560
LGA    A      69      A      69          0.847
LGA    N      70      N      70          2.218
LGA    H      71      H      71          2.841
LGA    C      72      C      72          1.787
LGA    R      73      R      73          1.673
LGA    R      74      R      74          4.002
LGA    P      75      P      75          7.954
LGA    R      76      R      76          7.027
LGA    Y      77      Y      77          3.248
LGA    L      78      L      78          3.727
LGA    K      79      K      79          3.453
LGA    A      80      A      80          6.552
LGA    L      81      L      81          7.493
LGA    A      82      A      82          3.694
LGA    R      83      R      83          1.891
LGA    G      84      G      84          3.635
LGA    G      85      G      85          3.864
LGA    K      86      K      86          1.819
LGA    R      87      R      87          3.865
LGA    F      88      F      88          4.635
LGA    D      89      D      89          8.505
LGA    L      90      L      90         10.925
LGA    N      91      N      91         12.440
LGA    N      92      N      92         15.382
LGA    R      93      R      93         14.427
LGA    F      94      F      94         11.504
LGA    K      95      K      95         12.644
LGA    G      96      G      96         10.769
LGA    E      97      E      97          7.927
LGA    V      98      V      98          5.302
LGA    T      99      T      99          1.964
LGA    P     100      P     100          2.664
LGA    E     101      E     101          3.158
LGA    E     102      E     102          1.645
LGA    Q     103      Q     103          2.325
LGA    A     104      A     104          4.910
LGA    I     105      I     105          4.958
LGA    A     106      A     106          2.921
LGA    Q     107      Q     107          5.664
LGA    N     108      N     108          3.557
LGA    H     109      H     109          1.688
LGA    P     110      P     110          1.726
LGA    F     111      F     111          3.257
LGA    V     112      V     112         10.468
LGA    Q     113      Q     113         11.238
LGA    Q     114      Q     114         12.500
LGA    A     115      A     115         16.094
LGA    L     116      L     116         20.602

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  116    4.0     33    2.59    27.371    23.386     1.228

LGA_LOCAL      RMSD =  2.588  Number of atoms =   33  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.754  Number of atoms =  116 
Std_ALL_ATOMS  RMSD = 16.940  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.957848 * X  +  -0.201136 * Y  +   0.205111 * Z  + -74.578529
  Y_new =   0.273552 * X  +  -0.420574 * Y  +   0.865036 * Z  +   1.697399
  Z_new =  -0.087726 * X  +   0.884682 * Y  +   0.457867 * Z  + -15.255579 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.093208   -2.048385  [ DEG:    62.6362   -117.3638 ]
  Theta =   0.087839    3.053754  [ DEG:     5.0328    174.9672 ]
  Phi   =   2.863408   -0.278185  [ DEG:   164.0612    -15.9388 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS393_1                                  
REMARK     2: T0360.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0360TS393_1.T0360.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  116   4.0   33   2.59  23.386    16.94
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS393_1
PFRMAT TS
TARGET T0360
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1     -67.115   2.531  12.076  1.00 25.00           C
ATOM      2  CA  THR     2     -64.914   1.612   9.095  1.00 25.00           C
ATOM      3  CA  GLN     3     -61.599  -0.254   9.303  1.00 25.00           C
ATOM      4  CA  GLU     4     -59.793  -2.085   6.465  1.00 25.00           C
ATOM      5  CA  THR     5     -61.427  -5.385   7.521  1.00 25.00           C
ATOM      6  CA  ALA     6     -64.864  -3.696   7.563  1.00 25.00           C
ATOM      7  CA  LEU     7     -64.237  -2.273   4.063  1.00 25.00           C
ATOM      8  CA  GLY     8     -63.216  -5.744   2.808  1.00 25.00           C
ATOM      9  CA  ALA     9     -66.397  -7.251   4.315  1.00 25.00           C
ATOM     10  CA  ALA    10     -68.512  -4.546   2.619  1.00 25.00           C
ATOM     11  CA  LEU    11     -66.795  -5.268  -0.727  1.00 25.00           C
ATOM     12  CA  LYS    12     -67.477  -9.012  -0.298  1.00 25.00           C
ATOM     13  CA  SER    13     -71.156  -8.279   0.470  1.00 25.00           C
ATOM     14  CA  ALA    14     -71.396  -6.079  -2.655  1.00 25.00           C
ATOM     15  CA  VAL    15     -69.832  -8.866  -4.766  1.00 25.00           C
ATOM     16  CA  GLN    16     -72.335 -11.387  -3.336  1.00 25.00           C
ATOM     17  CA  THR    17     -75.228  -9.014  -4.150  1.00 25.00           C
ATOM     18  CA  MET    18     -76.623 -11.995  -6.104  1.00 25.00           C
ATOM     19  CA  SER    19     -73.769 -14.195  -7.306  1.00 25.00           C
ATOM     20  CA  LYS    20     -73.276 -16.193 -10.549  1.00 25.00           C
ATOM     21  CA  LYS    21     -76.416 -17.663 -12.175  1.00 25.00           C
ATOM     22  CA  LYS    22     -78.107 -14.228 -12.073  1.00 25.00           C
ATOM     23  CA  GLN    23     -75.020 -12.634 -13.685  1.00 25.00           C
ATOM     24  CA  THR    24     -75.042 -15.306 -16.429  1.00 25.00           C
ATOM     25  CA  GLU    25     -78.762 -14.655 -17.066  1.00 25.00           C
ATOM     26  CA  MET    26     -78.089 -10.892 -17.303  1.00 25.00           C
ATOM     27  CA  ILE    27     -75.243 -11.533 -19.785  1.00 25.00           C
ATOM     28  CA  ALA    28     -77.545 -13.756 -21.888  1.00 25.00           C
ATOM     29  CA  ASP    29     -80.232 -11.026 -21.878  1.00 25.00           C
ATOM     30  CA  HIS    30     -77.637  -8.434 -22.980  1.00 25.00           C
ATOM     31  CA  ILE    31     -76.493 -10.747 -25.810  1.00 25.00           C
ATOM     32  CA  TYR    32     -80.125 -11.219 -26.926  1.00 25.00           C
ATOM     33  CA  GLY    33     -79.803 -15.001 -27.337  1.00 25.00           C
ATOM     34  CA  LYS    34     -82.434 -14.812 -24.601  1.00 25.00           C
ATOM     35  CA  TYR    35     -84.935 -15.327 -27.454  1.00 25.00           C
ATOM     36  CA  ASP    36     -87.843 -14.592 -25.071  1.00 25.00           C
ATOM     37  CA  VAL    37     -86.092 -11.400 -23.882  1.00 25.00           C
ATOM     38  CA  PHE    38     -85.554 -10.312 -27.513  1.00 25.00           C
ATOM     39  CA  LYS    39     -89.252 -10.949 -28.278  1.00 25.00           C
ATOM     40  CA  ARG    40     -90.266  -8.884 -25.217  1.00 25.00           C
ATOM     41  CA  PHE    41     -87.976  -6.031 -26.351  1.00 25.00           C
ATOM     42  CA  LYS    42     -87.072  -5.413 -29.945  1.00 25.00           C
ATOM     43  CA  PRO    43     -83.787  -3.618 -29.522  1.00 25.00           C
ATOM     44  CA  LEU    44     -81.382  -1.346 -31.404  1.00 25.00           C
ATOM     45  CA  ALA    45     -80.771   1.220 -34.147  1.00 25.00           C
ATOM     46  CA  LEU    46     -80.698   3.896 -31.513  1.00 25.00           C
ATOM     47  CA  GLY    47     -77.854   3.851 -28.924  1.00 25.00           C
ATOM     48  CA  ILE    48     -78.102   6.088 -25.825  1.00 25.00           C
ATOM     49  CA  ASP    49     -81.762   4.988 -25.577  1.00 25.00           C
ATOM     50  CA  GLN    50     -81.595   5.210 -21.757  1.00 25.00           C
ATOM     51  CA  ASP    51     -80.095   8.726 -22.003  1.00 25.00           C
ATOM     52  CA  LEU    52     -82.885   9.774 -24.409  1.00 25.00           C
ATOM     53  CA  ILE    53     -85.518   8.388 -21.999  1.00 25.00           C
ATOM     54  CA  ALA    54     -83.917  10.314 -19.102  1.00 25.00           C
ATOM     55  CA  ALA    55     -83.942  13.524 -21.189  1.00 25.00           C
ATOM     56  CA  LEU    56     -87.704  14.320 -21.317  1.00 25.00           C
ATOM     57  CA  PRO    57     -91.451  14.272 -21.777  1.00 25.00           C
ATOM     58  CA  GLN    58     -91.470  13.559 -17.983  1.00 25.00           C
ATOM     59  CA  TYR    59     -90.544   9.999 -19.072  1.00 25.00           C
ATOM     60  CA  ASP    60     -90.212   6.490 -20.347  1.00 25.00           C
ATOM     61  CA  ALA    61     -87.645   5.090 -17.848  1.00 25.00           C
ATOM     62  CA  ALA    62     -86.367   6.927 -14.740  1.00 25.00           C
ATOM     63  CA  LEU    63     -84.832   3.677 -13.419  1.00 25.00           C
ATOM     64  CA  ILE    64     -83.130   3.078 -16.797  1.00 25.00           C
ATOM     65  CA  ALA    65     -81.742   6.647 -16.755  1.00 25.00           C
ATOM     66  CA  ARG    66     -80.412   6.117 -13.204  1.00 25.00           C
ATOM     67  CA  VAL    67     -78.749   2.843 -14.289  1.00 25.00           C
ATOM     68  CA  LEU    68     -77.141   4.621 -17.275  1.00 25.00           C
ATOM     69  CA  ALA    69     -75.849   7.389 -14.964  1.00 25.00           C
ATOM     70  CA  ASN    70     -74.391   4.759 -12.591  1.00 25.00           C
ATOM     71  CA  HIS    71     -72.675   3.016 -15.538  1.00 25.00           C
ATOM     72  CA  CYS    72     -71.215   6.360 -16.698  1.00 25.00           C
ATOM     73  CA  ARG    73     -69.924   7.053 -13.159  1.00 25.00           C
ATOM     74  CA  ARG    74     -68.319   3.577 -13.039  1.00 25.00           C
ATOM     75  CA  PRO    75     -66.653   4.203 -16.431  1.00 25.00           C
ATOM     76  CA  ARG    76     -65.323   7.571 -15.184  1.00 25.00           C
ATOM     77  CA  TYR    77     -63.936   5.887 -12.037  1.00 25.00           C
ATOM     78  CA  LEU    78     -62.234   3.214 -14.188  1.00 25.00           C
ATOM     79  CA  LYS    79     -60.697   5.937 -16.399  1.00 25.00           C
ATOM     80  CA  ALA    80     -59.419   7.775 -13.292  1.00 25.00           C
ATOM     81  CA  LEU    81     -57.885   4.524 -11.970  1.00 25.00           C
ATOM     82  CA  ALA    82     -56.182   3.927 -15.349  1.00 25.00           C
ATOM     83  CA  ARG    83     -56.181   3.833 -19.150  1.00 25.00           C
ATOM     84  CA  GLY    84     -55.793   0.162 -20.070  1.00 25.00           C
ATOM     85  CA  GLY    85     -59.480  -0.446 -20.361  1.00 25.00           C
ATOM     86  CA  LYS    86     -60.147  -1.250 -24.000  1.00 25.00           C
ATOM     87  CA  ARG    87     -62.547  -4.236 -23.984  1.00 25.00           C
ATOM     88  CA  PHE    88     -64.480  -7.395 -24.928  1.00 25.00           C
ATOM     89  CA  ASP    89     -63.996  -8.869 -28.464  1.00 25.00           C
ATOM     90  CA  LEU    90     -65.674  -5.935 -30.228  1.00 25.00           C
ATOM     91  CA  ASN    91     -64.668  -7.796 -33.392  1.00 25.00           C
ATOM     92  CA  ASN    92     -63.385  -6.607 -36.746  1.00 25.00           C
ATOM     93  CA  ARG    93     -62.056  -3.470 -38.471  1.00 25.00           C
ATOM     94  CA  PHE    94     -63.782  -0.232 -37.528  1.00 25.00           C
ATOM     95  CA  LYS    95     -61.780   2.664 -39.014  1.00 25.00           C
ATOM     96  CA  GLY    96     -60.797   6.109 -37.601  1.00 25.00           C
ATOM     97  CA  GLU    97     -60.729   6.090 -33.763  1.00 25.00           C
ATOM     98  CA  VAL    98     -61.663   5.980 -30.067  1.00 25.00           C
ATOM     99  CA  THR    99     -58.517   7.446 -28.417  1.00 25.00           C
ATOM    100  CA  PRO   100     -58.314  10.842 -26.715  1.00 25.00           C
ATOM    101  CA  GLU   101     -61.979  11.947 -26.804  1.00 25.00           C
ATOM    102  CA  GLU   102     -62.881   9.251 -24.238  1.00 25.00           C
ATOM    103  CA  GLN   103     -60.017  10.412 -21.977  1.00 25.00           C
ATOM    104  CA  ALA   104     -61.225  14.035 -22.264  1.00 25.00           C
ATOM    105  CA  ILE   105     -64.784  12.945 -21.362  1.00 25.00           C
ATOM    106  CA  ALA   106     -63.455  11.030 -18.324  1.00 25.00           C
ATOM    107  CA  GLN   107     -61.472  14.115 -17.217  1.00 25.00           C
ATOM    108  CA  ASN   108     -60.346  16.325 -14.325  1.00 25.00           C
ATOM    109  CA  HIS   109     -61.473  13.823 -11.733  1.00 25.00           C
ATOM    110  CA  PRO   110     -59.886  15.405  -8.710  1.00 25.00           C
ATOM    111  CA  PHE   111     -60.614  12.827  -5.973  1.00 25.00           C
ATOM    112  CA  VAL   112     -62.707  15.407  -4.067  1.00 25.00           C
ATOM    113  CA  GLN   113     -64.658  16.220  -7.261  1.00 25.00           C
ATOM    114  CA  GLN   114     -65.293  12.490  -7.852  1.00 25.00           C
ATOM    115  CA  ALA   115     -66.528  12.103  -4.247  1.00 25.00           C
ATOM    116  CA  LEU   116     -68.869  15.099  -4.703  1.00 25.00           C
ATOM    117  CA  GLN   117     -70.228  13.578  -7.944  1.00 25.00           C
ATOM    118  CA  GLN   118     -70.820  10.242  -6.157  1.00 25.00           C
ATOM    119  CA  GLN   119     -72.662  12.054  -3.331  1.00 25.00           C
ATOM    120  CA  SER   120     -74.836  13.891  -5.893  1.00 25.00           C
ATOM    121  CA  ALA   121     -75.645  10.573  -7.624  1.00 25.00           C
ATOM    122  CA  GLN   122     -76.596   9.019  -4.256  1.00 25.00           C
ATOM    123  CA  ALA   123     -78.863  12.009  -3.488  1.00 25.00           C
ATOM    124  CA  ALA   124     -80.531  11.656  -6.918  1.00 25.00           C
ATOM    125  CA  ALA   125     -81.090   7.920  -6.288  1.00 25.00           C
ATOM    126  CA  GLU   126     -82.634   8.702  -2.872  1.00 25.00           C
ATOM    127  CA  THR   127     -84.944  11.298  -4.483  1.00 25.00           C
ATOM    128  CA  LEU   128     -86.004   8.745  -7.134  1.00 25.00           C
ATOM    129  CA  SER   129     -86.733   6.168  -4.397  1.00 25.00           C
ATOM    130  CA  VAL   130     -88.825   8.747  -2.490  1.00 25.00           C
ATOM    131  CA  GLU   131     -90.776   9.561  -5.685  1.00 25.00           C
ATOM    132  CA  ALA   132     -91.411   5.830  -6.276  1.00 25.00           C
ATOM    133  CA  GLU   133     -92.646   5.444  -2.671  1.00 25.00           C
ATOM    134  CA  ALA   134     -94.987   8.440  -3.126  1.00 25.00           C
ATOM    135  CA  ALA   135     -96.346   6.917  -6.368  1.00 25.00           C
ATOM    136  CA  GLU   136     -96.938   3.581  -4.581  1.00 25.00           C
ATOM    137  CA  SER   137     -98.069   1.688  -7.664  1.00 25.00           C
ATOM    138  CA  SER   138     -97.252   0.607 -11.182  1.00 25.00           C
ATOM    139  CA  ALA   139     -97.371  -2.895 -12.763  1.00 25.00           C
ATOM    140  CA  ALA   140     -97.301  -3.698 -16.515  1.00 25.00           C
ATOM    141  CA  GLU   141     -93.523  -3.062 -16.448  1.00 25.00           C
TER
END
