
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  116 , name T0360TS393_2
# Molecule2: number of CA atoms  116 (  917),  selected  116 , name T0360.pdb
# PARAMETERS: T0360TS393_2.T0360.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        60 - 106         4.96    14.76
  LONGEST_CONTINUOUS_SEGMENT:    47        61 - 107         4.98    15.04
  LCS_AVERAGE:     35.29

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    18         2 - 19          1.80    47.13
  LCS_AVERAGE:     11.32

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15         3 - 17          0.38    48.13
  LCS_AVERAGE:      8.22

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     M       1     M       1      4    4   28     4    4    4    4    4    4    6    7   13   15   21   23   29   31   35   36   37   39   39   43 
LCS_GDT     T       2     T       2      4   18   28     4    4    4    4    9   15   16   18   18   21   23   26   29   32   35   36   37   39   39   43 
LCS_GDT     Q       3     Q       3     15   18   28    14   15   15   15   16   17   17   18   19   21   23   26   29   31   35   35   36   38   39   42 
LCS_GDT     E       4     E       4     15   18   28    14   15   15   15   16   17   17   18   19   20   23   23   24   26   30   33   33   36   39   39 
LCS_GDT     T       5     T       5     15   18   28    14   15   15   15   16   17   17   18   19   20   20   23   24   26   30   33   34   36   39   41 
LCS_GDT     A       6     A       6     15   18   28    14   15   15   15   16   17   17   18   19   21   23   26   29   32   35   36   37   39   41   43 
LCS_GDT     L       7     L       7     15   18   28    14   15   15   15   16   17   17   18   19   21   23   26   29   32   35   36   37   39   40   43 
LCS_GDT     G       8     G       8     15   18   28    14   15   15   15   16   17   17   18   19   20   23   23   25   29   31   33   36   37   40   43 
LCS_GDT     A       9     A       9     15   18   28    14   15   15   15   16   17   17   18   19   21   23   26   29   32   35   40   44   55   56   59 
LCS_GDT     A      10     A      10     15   18   28    14   15   15   15   16   17   17   18   20   22   25   28   31   38   41   47   52   55   56   59 
LCS_GDT     L      11     L      11     15   18   28    14   15   15   15   16   17   17   18   19   21   24   29   36   39   46   49   52   55   61   63 
LCS_GDT     K      12     K      12     15   18   28    14   15   15   15   16   17   17   18   19   21   23   26   30   38   46   49   52   58   61   63 
LCS_GDT     S      13     S      13     15   18   28    14   15   15   15   16   17   21   23   24   36   38   43   46   51   53   58   60   62   65   67 
LCS_GDT     A      14     A      14     15   18   28    14   15   15   15   16   19   24   27   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     V      15     V      15     15   18   28    14   15   15   15   16   17   17   18   19   24   30   39   43   49   50   58   60   62   65   68 
LCS_GDT     Q      16     Q      16     15   18   42    14   15   15   15   16   17   17   18   20   23   29   37   42   48   52   57   60   62   65   68 
LCS_GDT     T      17     T      17     15   18   42     6   15   15   15   16   17   19   25   29   31   36   43   48   52   55   58   60   62   65   68 
LCS_GDT     M      18     M      18      4   18   42     3    3    4   10   15   17   17   22   26   31   32   35   39   43   47   50   56   59   64   68 
LCS_GDT     S      19     S      19      4   18   42     3    3   12   15   16   17   17   22   26   31   33   35   37   40   45   50   52   57   62   66 
LCS_GDT     K      20     K      20     13   16   42    13   13   14   14   15   17   17   21   26   31   33   35   36   39   41   42   46   50   55   59 
LCS_GDT     K      21     K      21     13   16   42    13   13   14   14   15   17   17   21   26   31   33   35   36   39   41   42   44   47   48   51 
LCS_GDT     K      22     K      22     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   41   44   48   50   53   59 
LCS_GDT     Q      23     Q      23     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   43   49   52   57   62   66 
LCS_GDT     T      24     T      24     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   41   44   48   50   55   59 
LCS_GDT     E      25     E      25     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   41   44   46   47   49   55 
LCS_GDT     M      26     M      26     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   41   45   51   54   60   65 
LCS_GDT     I      27     I      27     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   37   43   45   50   52   59   64   68 
LCS_GDT     A      28     A      28     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   41   44   48   51   60   64 
LCS_GDT     D      29     D      29     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   36   39   41   45   48   50   58   62 
LCS_GDT     H      30     H      30     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   39   43   45   49   56   59   64   68 
LCS_GDT     I      31     I      31     13   16   42    13   13   14   14   15   17   18   22   26   31   33   35   39   43   49   52   56   60   64   68 
LCS_GDT     Y      32     Y      32     13   16   42    13   13   14   14   15   17   17   22   26   31   33   35   36   39   41   45   51   54   61   65 
LCS_GDT     G      33     G      33      4   16   42     3    4    6    9   14   14   18   22   26   31   33   35   36   39   41   45   51   54   61   65 
LCS_GDT     K      34     K      34      4    8   42     3    4    4    4    6    9   14   19   25   28   33   35   36   39   43   46   52   58   62   68 
LCS_GDT     Y      35     Y      35      7    8   42     6    8    8    8    9   10   10   11   19   24   28   33   36   39   41   44   46   47   51   62 
LCS_GDT     D      36     D      36      7    8   42     6    8    8    8    9   10   14   19   24   27   30   34   36   39   41   44   46   47   49   53 
LCS_GDT     V      37     V      37      7    8   42     6    8    8    9   12   16   17   19   25   31   33   35   36   39   41   44   46   47   49   53 
LCS_GDT     F      38     F      38      7    8   42     6    8    8   12   15   17   18   22   26   31   33   35   36   39   41   44   46   47   55   62 
LCS_GDT     K      39     K      39      7    8   42     6    8    8    8    9   13   18   20   25   31   33   35   36   39   41   44   46   50   56   62 
LCS_GDT     R      40     R      40      7    8   42     6    8    8    9   13   14   18   20   25   31   33   35   36   39   41   44   46   47   55   62 
LCS_GDT     F      41     F      41      7    8   42     6    8    8    8    9   17   17   22   26   31   33   35   36   39   41   44   46   50   56   62 
LCS_GDT     K      42     K      42      4    6   42     3    3    5    6    9   12   17   20   25   29   33   35   36   39   41   44   46   47   49   53 
LCS_GDT     P      43     P      43      4    6   42     3    3    5    5   11   15   17   20   24   27   31   34   36   39   41   44   46   47   49   51 
LCS_GDT     L      44     L      44      4   13   42     3    3    5   12   13   15   18   20   25   31   33   35   36   39   41   44   46   47   49   51 
LCS_GDT     A      45     A      45      3   15   42     3    3   14   14   15   17   18   20   26   31   33   35   36   39   41   44   46   47   49   51 
LCS_GDT     L      46     L      46      3   15   42     3    3    8   12   13   15   17   22   26   31   33   35   36   39   41   44   46   47   49   51 
LCS_GDT     G      47     G      47      3   15   42     3    3    3    4    9   14   16   22   26   31   33   35   36   39   41   44   46   47   52   53 
LCS_GDT     I      48     I      48     12   15   42     8    9   11   12   13   15   17   22   26   31   33   36   40   46   49   52   54   59   64   66 
LCS_GDT     D      49     D      49     12   15   42     8    9   11   12   13   15   17   20   24   28   33   38   42   47   50   56   60   62   65   68 
LCS_GDT     Q      50     Q      50     12   15   42     8    9   11   12   13   15   17   20   25   28   33   38   42   47   50   56   60   62   65   68 
LCS_GDT     D      51     D      51     12   15   42     8    9   11   12   13   15   18   25   29   33   38   41   45   49   53   58   60   62   65   68 
LCS_GDT     L      52     L      52     12   15   42     8    9   11   12   13   15   22   29   33   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     I      53     I      53     12   15   42     8    9   11   12   13   15   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      54     A      54     12   15   42     8    9   11   12   13   17   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      55     A      55     12   15   42     8    9   11   12   15   17   24   27   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     L      56     L      56     12   15   42     3    9   11   12   13   18   23   27   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     P      57     P      57     12   15   42     3    3    7   12   16   18   23   27   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     Q      58     Q      58     12   15   42     3    7   11   12   13   15   17   20   21   23   27   33   36   41   48   52   54   56   59   65 
LCS_GDT     Y      59     Y      59     12   15   44     3    9   11   12   13   15   16   20   21   22   24   26   36   45   48   52   54   59   61   66 
LCS_GDT     D      60     D      60      3   16   47     3    3    4    9   12   18   24   27   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      61     A      61     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      62     A      62     14   16   47    14   15   15   16   17   19   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     L      63     L      63     14   16   47    14   15   15   16   17   19   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     I      64     I      64     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      65     A      65     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     R      66     R      66     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     V      67     V      67     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     L      68     L      68     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      69     A      69     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     N      70     N      70     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     H      71     H      71     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     C      72     C      72     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     R      73     R      73     14   16   47    14   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     R      74     R      74     14   16   47    14   15   15   16   17   19   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     P      75     P      75      9   16   47     9    9    9    9   10   15   18   20   22   29   33   38   47   52   55   58   60   62   65   68 
LCS_GDT     R      76     R      76      9   16   47     9    9    9    9    9   10   14   19   21   30   36   44   48   52   55   58   60   62   65   68 
LCS_GDT     Y      77     Y      77      9   10   47     9    9    9   12   13   17   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     L      78     L      78      9   10   47     9    9    9   10   15   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     K      79     K      79      9   10   47     9   15   15   16   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A      80     A      80      9   10   47     9    9    9   12   13   14   15   19   26   31   36   43   47   52   55   58   60   62   65   68 
LCS_GDT     L      81     L      81      9   10   47     9    9    9    9    9   10   10   11   12   20   23   35   40   45   48   54   60   62   65   68 
LCS_GDT     A      82     A      82      9   10   47     9    9    9    9   14   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     R      83     R      83      4   10   47     3    5   11   15   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     G      84     G      84      4    6   47     3    4    5    9   14   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     G      85     G      85      4    6   47     3    4    5    6    7   18   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     K      86     K      86      4    6   47     3    4    6   11   14   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     R      87     R      87      4    6   47     3    4    6   11   14   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     F      88     F      88      4    6   47     3    4    5    9   13   18   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     D      89     D      89      4    6   47     3    4    5    5    6   13   17   23   26   27   33   39   42   47   51   56   60   62   65   68 
LCS_GDT     L      90     L      90      3    7   47     0    3    4    6    7   10   14   18   24   27   32   37   41   47   51   54   58   60   65   68 
LCS_GDT     N      91     N      91      3    7   47     3    4    4    6    8   12   14   18   25   30   35   39   44   51   53   56   59   61   65   68 
LCS_GDT     N      92     N      92      4    8   47     3    4    4    6    8   10   11   14   17   19   26   30   39   43   48   53   59   59   64   67 
LCS_GDT     R      93     R      93      4    8   47     3    5    5    6    8   10   13   27   29   34   40   44   48   52   55   58   60   62   65   68 
LCS_GDT     F      94     F      94      4    8   47     3    4   15   16   17   19   23   27   31   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     K      95     K      95      4    8   47     3    5    5    6    8   12   21   27   31   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     G      96     G      96      4    8   47     3    5    5    6    8   12   14   27   31   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     E      97     E      97      4    8   47     3    5    5    6   14   19   23   27   31   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     V      98     V      98      4   13   47     3    5    5    8   17   19   23   27   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     T      99     T      99     10   13   47     9    9   10   14   17   19   24   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     P     100     P     100     10   13   47     9    9   10   12   13   19   22   27   32   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     E     101     E     101     10   13   47     9    9   10   12   13   14   18   23   28   33   38   44   48   52   55   58   60   62   65   68 
LCS_GDT     E     102     E     102     10   13   47     9    9   10   12   15   19   23   29   34   36   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     Q     103     Q     103     10   13   47     9    9   10   16   17   19   22   27   32   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     A     104     A     104     10   13   47     9    9   10   12   13   14   18   23   28   33   36   43   46   52   55   58   60   62   65   68 
LCS_GDT     I     105     I     105     10   13   47     9    9   10   12   13   14   18   23   28   33   36   43   48   52   55   58   60   62   65   68 
LCS_GDT     A     106     A     106     10   13   47     9    9   10   12   17   18   22   27   32   35   41   44   48   52   55   58   60   62   65   68 
LCS_GDT     Q     107     Q     107     10   13   47     9    9   10   12   13   14   15   23   28   33   36   43   46   51   55   58   60   62   65   68 
LCS_GDT     N     108     N     108     10   13   29     3    5    9   12   13   14   18   23   28   33   36   43   46   51   55   58   60   62   65   68 
LCS_GDT     H     109     H     109      6   13   29     3    6   10   12   13   17   22   27   32   35   39   44   48   52   55   58   60   62   65   68 
LCS_GDT     P     110     P     110      6   13   29     4    5   10   12   12   15   19   25   29   33   38   44   47   52   55   58   60   62   65   68 
LCS_GDT     F     111     F     111      4   13   26     4    4    7   11   12   14   15   15   18   28   34   43   46   50   55   58   60   62   65   66 
LCS_GDT     V     112     V     112      5    7   23     4    5    7    7    7    8    9   10   12   13   14   24   28   34   39   43   51   55   57   63 
LCS_GDT     Q     113     Q     113      5    7   23     4    5    7    7    7   10   12   16   19   21   26   32   37   42   45   48   52   56   60   66 
LCS_GDT     Q     114     Q     114      5    7   23     4    5    7    7    7    8   12   13   18   21   26   30   37   40   45   48   52   55   60   66 
LCS_GDT     A     115     A     115      5    7   22     4    5    7    7    7    8    9    9   11   13   14   16   17   20   23   26   48   50   54   55 
LCS_GDT     L     116     L     116      5    7   18     3    5    7    7    7    8    9   10   12   12   14   16   17   18   18   18   18   18   25   30 
LCS_AVERAGE  LCS_A:  18.27  (   8.22   11.32   35.29 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     15     16     17     19     24     29     34     36     41     44     48     52     55     58     60     62     65     68 
GDT PERCENT_CA  12.07  12.93  12.93  13.79  14.66  16.38  20.69  25.00  29.31  31.03  35.34  37.93  41.38  44.83  47.41  50.00  51.72  53.45  56.03  58.62
GDT RMS_LOCAL    0.24   0.38   0.38   0.64   1.05   1.52   2.75   2.75   3.23   3.35   3.77   3.99   4.37   4.67   4.95   5.12   5.34   5.45   5.72   6.31
GDT RMS_ALL_CA  14.84  48.13  48.13  14.90  14.50  14.46  14.32  14.62  14.29  14.28  14.22  14.26  14.25  14.34  14.44  14.35  14.56  14.43  14.48  14.45

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         39.973
LGA    T       2      T       2         37.001
LGA    Q       3      Q       3         34.922
LGA    E       4      E       4         32.929
LGA    T       5      T       5         29.586
LGA    A       6      A       6         25.658
LGA    L       7      L       7         23.521
LGA    G       8      G       8         22.015
LGA    A       9      A       9         17.626
LGA    A      10      A      10         15.059
LGA    L      11      L      11         13.611
LGA    K      12      K      12         12.558
LGA    S      13      S      13          7.243
LGA    A      14      A      14          6.229
LGA    V      15      V      15          8.843
LGA    Q      16      Q      16         10.020
LGA    T      17      T      17          9.993
LGA    M      18      M      18         16.698
LGA    S      19      S      19         18.933
LGA    K      20      K      20         22.314
LGA    K      21      K      21         27.072
LGA    K      22      K      22         25.404
LGA    Q      23      Q      23         18.822
LGA    T      24      T      24         20.715
LGA    E      25      E      25         24.422
LGA    M      26      M      26         20.083
LGA    I      27      I      27         15.058
LGA    A      28      A      28         19.293
LGA    D      29      D      29         21.053
LGA    H      30      H      30         15.071
LGA    I      31      I      31         12.532
LGA    Y      32      Y      32         18.034
LGA    G      33      G      33         19.259
LGA    K      34      K      34         14.531
LGA    Y      35      Y      35         15.676
LGA    D      36      D      36         17.461
LGA    V      37      V      37         17.214
LGA    F      38      F      38         16.437
LGA    K      39      K      39         17.055
LGA    R      40      R      40         17.544
LGA    F      41      F      41         17.046
LGA    K      42      K      42         18.029
LGA    P      43      P      43         21.840
LGA    L      44      L      44         18.841
LGA    A      45      A      45         20.011
LGA    L      46      L      46         19.375
LGA    G      47      G      47         16.878
LGA    I      48      I      48          9.428
LGA    D      49      D      49          7.138
LGA    Q      50      Q      50          7.344
LGA    D      51      D      51          5.484
LGA    L      52      L      52          3.622
LGA    I      53      I      53          3.995
LGA    A      54      A      54          3.571
LGA    A      55      A      55          4.400
LGA    L      56      L      56          6.603
LGA    P      57      P      57          7.496
LGA    Q      58      Q      58         12.857
LGA    Y      59      Y      59         10.937
LGA    D      60      D      60          6.291
LGA    A      61      A      61          2.052
LGA    A      62      A      62          2.373
LGA    L      63      L      63          1.614
LGA    I      64      I      64          1.241
LGA    A      65      A      65          1.646
LGA    R      66      R      66          1.099
LGA    V      67      V      67          1.888
LGA    L      68      L      68          2.184
LGA    A      69      A      69          0.913
LGA    N      70      N      70          2.118
LGA    H      71      H      71          3.145
LGA    C      72      C      72          2.374
LGA    R      73      R      73          1.730
LGA    R      74      R      74          3.833
LGA    P      75      P      75          7.992
LGA    R      76      R      76          7.546
LGA    Y      77      Y      77          3.557
LGA    L      78      L      78          3.143
LGA    K      79      K      79          3.487
LGA    A      80      A      80          7.038
LGA    L      81      L      81          7.675
LGA    A      82      A      82          3.686
LGA    R      83      R      83          1.832
LGA    G      84      G      84          2.826
LGA    G      85      G      85          3.545
LGA    K      86      K      86          2.700
LGA    R      87      R      87          2.922
LGA    F      88      F      88          3.704
LGA    D      89      D      89          7.703
LGA    L      90      L      90         10.605
LGA    N      91      N      91         10.612
LGA    N      92      N      92         13.406
LGA    R      93      R      93          9.478
LGA    F      94      F      94          8.495
LGA    K      95      K      95          7.648
LGA    G      96      G      96          7.195
LGA    E      97      E      97          6.324
LGA    V      98      V      98          4.274
LGA    T      99      T      99          1.972
LGA    P     100      P     100          6.079
LGA    E     101      E     101          6.743
LGA    E     102      E     102          3.256
LGA    Q     103      Q     103          6.014
LGA    A     104      A     104          9.615
LGA    I     105      I     105          8.014
LGA    A     106      A     106          5.729
LGA    Q     107      Q     107         11.123
LGA    N     108      N     108         11.208
LGA    H     109      H     109          6.678
LGA    P     110      P     110          8.574
LGA    F     111      F     111         10.814
LGA    V     112      V     112         16.823
LGA    Q     113      Q     113         16.666
LGA    Q     114      Q     114         16.672
LGA    A     115      A     115         21.497
LGA    L     116      L     116         24.936

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  116    4.0     29    2.75    25.431    21.512     1.017

LGA_LOCAL      RMSD =  2.750  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.556  Number of atoms =  116 
Std_ALL_ATOMS  RMSD = 13.659  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.028158 * X  +  -0.981989 * Y  +  -0.186827 * Z  + -79.546631
  Y_new =   0.836629 * X  +  -0.079133 * Y  +   0.542023 * Z  +   0.626237
  Z_new =  -0.547045 * X  +  -0.171567 * Y  +   0.819333 * Z  + -15.361382 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.206416    2.935176  [ DEG:   -11.8268    168.1732 ]
  Theta =   0.578830    2.562762  [ DEG:    33.1645    146.8355 ]
  Phi   =   1.537153   -1.604439  [ DEG:    88.0724    -91.9276 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS393_2                                  
REMARK     2: T0360.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0360TS393_2.T0360.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  116   4.0   29   2.75  21.512    13.66
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS393_2
PFRMAT TS
TARGET T0360
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1     -96.895  18.930  -4.826  1.00 25.00           C
ATOM      2  CA  THR     2     -96.935  15.949  -7.170  1.00 25.00           C
ATOM      3  CA  GLN     3     -99.858  15.330  -9.561  1.00 25.00           C
ATOM      4  CA  GLU     4    -101.032  12.896  -6.848  1.00 25.00           C
ATOM      5  CA  THR     5    -104.062  11.938  -8.986  1.00 25.00           C
ATOM      6  CA  ALA     6    -101.779  11.343 -12.002  1.00 25.00           C
ATOM      7  CA  LEU     7     -99.484   9.146  -9.862  1.00 25.00           C
ATOM      8  CA  GLY     8    -102.508   7.143  -8.634  1.00 25.00           C
ATOM      9  CA  ALA     9    -103.695   6.674 -12.246  1.00 25.00           C
ATOM     10  CA  ALA    10    -100.202   5.478 -13.263  1.00 25.00           C
ATOM     11  CA  LEU    11    -100.171   3.001 -10.344  1.00 25.00           C
ATOM     12  CA  LYS    12    -103.618   1.694 -11.385  1.00 25.00           C
ATOM     13  CA  SER    13    -102.394   1.264 -14.988  1.00 25.00           C
ATOM     14  CA  ALA    14     -99.315  -0.642 -13.741  1.00 25.00           C
ATOM     15  CA  VAL    15    -101.551  -2.912 -11.616  1.00 25.00           C
ATOM     16  CA  GLN    16    -103.796  -3.580 -14.646  1.00 25.00           C
ATOM     17  CA  THR    17    -100.724  -4.439 -16.764  1.00 25.00           C
ATOM     18  CA  MET    18    -102.592  -7.543 -18.007  1.00 25.00           C
ATOM     19  CA  SER    19    -100.379  -9.595 -15.712  1.00 25.00           C
ATOM     20  CA  LYS    20     -98.762 -12.524 -17.502  1.00 25.00           C
ATOM     21  CA  LYS    21     -97.430 -15.905 -18.712  1.00 25.00           C
ATOM     22  CA  LYS    22     -97.166 -14.550 -22.284  1.00 25.00           C
ATOM     23  CA  GLN    23     -95.274 -11.476 -21.006  1.00 25.00           C
ATOM     24  CA  THR    24     -92.879 -13.734 -19.049  1.00 25.00           C
ATOM     25  CA  GLU    25     -92.286 -15.860 -22.178  1.00 25.00           C
ATOM     26  CA  MET    26     -91.572 -12.700 -24.221  1.00 25.00           C
ATOM     27  CA  ILE    27     -89.095 -11.507 -21.553  1.00 25.00           C
ATOM     28  CA  ALA    28     -87.354 -14.917 -21.609  1.00 25.00           C
ATOM     29  CA  ASP    29     -87.118 -14.761 -25.428  1.00 25.00           C
ATOM     30  CA  HIS    30     -85.626 -11.241 -25.217  1.00 25.00           C
ATOM     31  CA  ILE    31     -83.063 -12.456 -22.643  1.00 25.00           C
ATOM     32  CA  TYR    32     -82.130 -15.390 -24.919  1.00 25.00           C
ATOM     33  CA  GLY    33     -82.492 -18.842 -26.391  1.00 25.00           C
ATOM     34  CA  LYS    34     -80.958 -20.748 -23.492  1.00 25.00           C
ATOM     35  CA  TYR    35     -83.192 -20.311 -20.411  1.00 25.00           C
ATOM     36  CA  ASP    36     -80.859 -22.561 -18.371  1.00 25.00           C
ATOM     37  CA  VAL    37     -77.835 -20.515 -19.526  1.00 25.00           C
ATOM     38  CA  PHE    38     -79.617 -17.274 -18.531  1.00 25.00           C
ATOM     39  CA  LYS    39     -80.421 -18.745 -15.088  1.00 25.00           C
ATOM     40  CA  ARG    40     -76.759 -19.773 -14.644  1.00 25.00           C
ATOM     41  CA  PHE    41     -75.626 -16.245 -15.607  1.00 25.00           C
ATOM     42  CA  LYS    42     -77.870 -14.368 -13.094  1.00 25.00           C
ATOM     43  CA  PRO    43     -80.241 -12.503 -10.729  1.00 25.00           C
ATOM     44  CA  LEU    44     -77.438 -10.623  -9.052  1.00 25.00           C
ATOM     45  CA  ALA    45     -73.638 -10.305  -9.109  1.00 25.00           C
ATOM     46  CA  LEU    46     -72.339  -9.380 -12.555  1.00 25.00           C
ATOM     47  CA  GLY    47     -75.141  -7.022 -13.662  1.00 25.00           C
ATOM     48  CA  ILE    48     -75.511  -4.638 -16.521  1.00 25.00           C
ATOM     49  CA  ASP    49     -75.602  -0.897 -17.338  1.00 25.00           C
ATOM     50  CA  GLN    50     -75.650  -1.692 -21.084  1.00 25.00           C
ATOM     51  CA  ASP    51     -78.526  -4.163 -20.548  1.00 25.00           C
ATOM     52  CA  LEU    52     -80.464  -1.516 -18.570  1.00 25.00           C
ATOM     53  CA  ILE    53     -79.899   1.029 -21.376  1.00 25.00           C
ATOM     54  CA  ALA    54     -81.142  -1.508 -23.961  1.00 25.00           C
ATOM     55  CA  ALA    55     -84.259  -2.179 -21.841  1.00 25.00           C
ATOM     56  CA  LEU    56     -85.618   1.281 -22.363  1.00 25.00           C
ATOM     57  CA  PRO    57     -87.345   2.491 -25.508  1.00 25.00           C
ATOM     58  CA  GLN    58     -86.532   6.203 -25.412  1.00 25.00           C
ATOM     59  CA  TYR    59     -84.809   8.107 -22.590  1.00 25.00           C
ATOM     60  CA  ASP    60     -88.293   8.223 -21.111  1.00 25.00           C
ATOM     61  CA  ALA    61     -87.655   4.919 -19.339  1.00 25.00           C
ATOM     62  CA  ALA    62     -86.599   7.038 -16.328  1.00 25.00           C
ATOM     63  CA  LEU    63     -85.124   3.937 -14.632  1.00 25.00           C
ATOM     64  CA  ILE    64     -83.199   3.074 -17.828  1.00 25.00           C
ATOM     65  CA  ALA    65     -81.849   6.653 -18.011  1.00 25.00           C
ATOM     66  CA  ARG    66     -80.750   6.452 -14.348  1.00 25.00           C
ATOM     67  CA  VAL    67     -78.988   3.122 -15.034  1.00 25.00           C
ATOM     68  CA  LEU    68     -77.206   4.659 -18.056  1.00 25.00           C
ATOM     69  CA  ALA    69     -76.094   7.634 -15.916  1.00 25.00           C
ATOM     70  CA  ASN    70     -74.770   5.244 -13.234  1.00 25.00           C
ATOM     71  CA  HIS    71     -72.848   3.277 -15.901  1.00 25.00           C
ATOM     72  CA  CYS    72     -71.348   6.531 -17.254  1.00 25.00           C
ATOM     73  CA  ARG    73     -70.296   7.546 -13.713  1.00 25.00           C
ATOM     74  CA  ARG    74     -68.669   4.119 -13.187  1.00 25.00           C
ATOM     75  CA  PRO    75     -66.792   4.473 -16.506  1.00 25.00           C
ATOM     76  CA  ARG    76     -65.578   7.956 -15.477  1.00 25.00           C
ATOM     77  CA  TYR    77     -64.384   6.571 -12.112  1.00 25.00           C
ATOM     78  CA  LEU    78     -62.520   3.749 -13.907  1.00 25.00           C
ATOM     79  CA  LYS    79     -60.868   6.293 -16.245  1.00 25.00           C
ATOM     80  CA  ALA    80     -59.812   8.411 -13.234  1.00 25.00           C
ATOM     81  CA  LEU    81     -58.337   5.311 -11.538  1.00 25.00           C
ATOM     82  CA  ALA    82     -56.412   4.448 -14.734  1.00 25.00           C
ATOM     83  CA  ARG    83     -56.822   4.346 -18.479  1.00 25.00           C
ATOM     84  CA  GLY    84     -56.328   0.919 -20.015  1.00 25.00           C
ATOM     85  CA  GLY    85     -59.761  -0.422 -20.833  1.00 25.00           C
ATOM     86  CA  LYS    86     -58.880  -2.376 -24.018  1.00 25.00           C
ATOM     87  CA  ARG    87     -62.570  -3.029 -24.942  1.00 25.00           C
ATOM     88  CA  PHE    88     -64.683  -6.237 -25.062  1.00 25.00           C
ATOM     89  CA  ASP    89     -64.851  -9.956 -25.973  1.00 25.00           C
ATOM     90  CA  LEU    90     -65.964  -9.353 -29.537  1.00 25.00           C
ATOM     91  CA  ASN    91     -67.117 -10.380 -33.020  1.00 25.00           C
ATOM     92  CA  ASN    92     -68.797  -8.518 -35.913  1.00 25.00           C
ATOM     93  CA  ARG    93     -66.656  -5.527 -34.958  1.00 25.00           C
ATOM     94  CA  PHE    94     -68.334  -2.104 -34.497  1.00 25.00           C
ATOM     95  CA  LYS    95     -66.191   0.871 -35.564  1.00 25.00           C
ATOM     96  CA  GLY    96     -63.951   3.936 -35.744  1.00 25.00           C
ATOM     97  CA  GLU    97     -62.412   5.279 -32.591  1.00 25.00           C
ATOM     98  CA  VAL    98     -61.902   6.009 -28.931  1.00 25.00           C
ATOM     99  CA  THR    99     -60.341   8.398 -26.413  1.00 25.00           C
ATOM    100  CA  PRO   100     -62.056  11.767 -26.846  1.00 25.00           C
ATOM    101  CA  GLU   101     -65.672  10.795 -26.042  1.00 25.00           C
ATOM    102  CA  GLU   102     -64.610   9.641 -22.548  1.00 25.00           C
ATOM    103  CA  GLN   103     -62.771  12.952 -21.986  1.00 25.00           C
ATOM    104  CA  ALA   104     -65.880  14.896 -23.096  1.00 25.00           C
ATOM    105  CA  ILE   105     -68.048  12.848 -20.693  1.00 25.00           C
ATOM    106  CA  ALA   106     -65.595  13.555 -17.838  1.00 25.00           C
ATOM    107  CA  GLN   107     -65.687  17.296 -18.653  1.00 25.00           C
ATOM    108  CA  ASN   108     -67.598  19.234 -16.065  1.00 25.00           C
ATOM    109  CA  HIS   109     -66.018  16.837 -13.504  1.00 25.00           C
ATOM    110  CA  PRO   110     -65.165  19.710 -11.120  1.00 25.00           C
ATOM    111  CA  PHE   111     -65.609  19.658  -7.317  1.00 25.00           C
ATOM    112  CA  VAL   112     -69.202  20.929  -7.694  1.00 25.00           C
ATOM    113  CA  GLN   113     -69.918  18.207 -10.292  1.00 25.00           C
ATOM    114  CA  GLN   114     -68.484  15.548  -7.936  1.00 25.00           C
ATOM    115  CA  ALA   115     -70.674  16.861  -5.082  1.00 25.00           C
ATOM    116  CA  LEU   116     -73.756  16.730  -7.352  1.00 25.00           C
ATOM    117  CA  GLN   117     -72.904  13.130  -8.343  1.00 25.00           C
ATOM    118  CA  GLN   118     -72.526  12.178  -4.654  1.00 25.00           C
ATOM    119  CA  GLN   119     -75.917  13.776  -3.869  1.00 25.00           C
ATOM    120  CA  SER   120     -77.525  11.841  -6.757  1.00 25.00           C
ATOM    121  CA  ALA   121     -75.983   8.582  -5.462  1.00 25.00           C
ATOM    122  CA  GLN   122     -77.319   9.316  -1.949  1.00 25.00           C
ATOM    123  CA  ALA   123     -80.804   9.987  -3.388  1.00 25.00           C
ATOM    124  CA  ALA   124     -80.666   6.686  -5.326  1.00 25.00           C
ATOM    125  CA  ALA   125     -79.636   4.830  -2.139  1.00 25.00           C
ATOM    126  CA  GLU   126     -82.540   6.441  -0.232  1.00 25.00           C
ATOM    127  CA  THR   127     -84.969   5.406  -3.006  1.00 25.00           C
ATOM    128  CA  LEU   128     -83.630   1.820  -2.874  1.00 25.00           C
ATOM    129  CA  SER   129     -84.073   1.768   0.929  1.00 25.00           C
ATOM    130  CA  VAL   130     -87.667   3.039   0.552  1.00 25.00           C
ATOM    131  CA  GLU   131     -88.383   0.317  -2.046  1.00 25.00           C
ATOM    132  CA  ALA   132     -86.949  -2.341   0.310  1.00 25.00           C
ATOM    133  CA  GLU   133     -89.139  -1.029   3.164  1.00 25.00           C
ATOM    134  CA  ALA   134     -92.220  -1.160   0.893  1.00 25.00           C
ATOM    135  CA  ALA   135     -91.368  -4.759  -0.097  1.00 25.00           C
ATOM    136  CA  GLU   136     -90.991  -5.712   3.593  1.00 25.00           C
ATOM    137  CA  SER   137     -89.214  -9.036   2.822  1.00 25.00           C
ATOM    138  CA  SER   138     -88.281  -9.620  -0.790  1.00 25.00           C
ATOM    139  CA  ALA   139     -85.526 -11.643  -2.585  1.00 25.00           C
ATOM    140  CA  ALA   140     -82.253 -12.846  -4.180  1.00 25.00           C
ATOM    141  CA  GLU   141     -78.787 -11.200  -3.894  1.00 25.00           C
TER
END
