
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  141 (  141),  selected  116 , name T0360TS393_5
# Molecule2: number of CA atoms  116 (  917),  selected  116 , name T0360.pdb
# PARAMETERS: T0360TS393_5.T0360.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    48        28 - 75          4.99    17.76
  LCS_AVERAGE:     33.03

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        55 - 74          1.99    17.11
  LONGEST_CONTINUOUS_SEGMENT:    20        56 - 75          1.94    17.17
  LCS_AVERAGE:     11.72

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        59 - 74          0.79    16.64
  LONGEST_CONTINUOUS_SEGMENT:    16        60 - 75          1.00    16.67
  LCS_AVERAGE:      8.35

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  116
LCS_GDT     M       1     M       1      3   17   24     3    3    3    3    4    9   13   15   17   19   19   19   22   25   27   34   37   39   40   42 
LCS_GDT     T       2     T       2      3   17   24     3    3    3    8   13   16   16   16   17   19   20   22   24   25   29   30   30   32   36   38 
LCS_GDT     Q       3     Q       3     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   29   30   30   31   33   37 
LCS_GDT     E       4     E       4     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   28   30   30   31   33   36 
LCS_GDT     T       5     T       5     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   28   30   30   31   33   36 
LCS_GDT     A       6     A       6     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   29   30   35   39   40   41 
LCS_GDT     L       7     L       7     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   29   30   31   34   35   38 
LCS_GDT     G       8     G       8     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   28   30   30   31   33   36 
LCS_GDT     A       9     A       9     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   29   30   35   39   40   41 
LCS_GDT     A      10     A      10     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   31   34   37   37   39   41   43 
LCS_GDT     L      11     L      11     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   29   30   31   36   40   41 
LCS_GDT     K      12     K      12     15   17   24    14   15   15   15   15   16   16   17   18   19   20   22   24   25   29   34   37   39   40   42 
LCS_GDT     S      13     S      13     15   17   27    14   15   15   15   15   16   16   17   18   19   22   29   32   35   38   38   39   42   46   50 
LCS_GDT     A      14     A      14     15   17   27    14   15   15   15   15   16   16   17   18   19   21   23   28   32   35   38   39   41   46   49 
LCS_GDT     V      15     V      15     15   17   27    14   15   15   15   15   16   16   17   18   19   20   22   25   31   35   37   38   41   46   50 
LCS_GDT     Q      16     Q      16     15   17   41    14   15   15   15   15   16   16   17   18   21   26   31   35   37   38   39   42   44   50   55 
LCS_GDT     T      17     T      17     15   17   41     6   15   15   15   15   16   16   17   19   27   30   34   36   38   41   44   51   55   57   62 
LCS_GDT     M      18     M      18      3   17   41     3    3    3    5    9   16   16   18   26   31   34   35   39   47   51   56   61   64   66   70 
LCS_GDT     S      19     S      19     14   17   41     0    3   10   14   14   16   18   23   28   31   34   35   39   47   51   57   61   64   67   70 
LCS_GDT     K      20     K      20     14   16   41    13   13   13   14   14   16   17   21   28   31   34   34   37   41   44   47   53   56   60   67 
LCS_GDT     K      21     K      21     14   16   41    13   13   13   14   14   16   17   21   28   31   34   34   38   41   44   48   53   56   60   63 
LCS_GDT     K      22     K      22     14   16   41    13   13   13   14   14   16   19   24   28   31   34   35   40   50   56   59   62   65   68   70 
LCS_GDT     Q      23     Q      23     14   16   41    13   13   13   14   14   16   19   24   28   31   34   36   45   51   56   59   62   65   68   70 
LCS_GDT     T      24     T      24     14   16   42    13   13   13   14   14   16   19   24   28   31   34   36   39   44   50   54   62   65   68   70 
LCS_GDT     E      25     E      25     14   16   45    13   13   13   14   14   16   18   23   28   31   34   36   40   46   56   59   62   65   68   70 
LCS_GDT     M      26     M      26     14   16   47    13   13   13   14   14   16   18   23   28   31   38   44   49   52   56   59   62   65   68   70 
LCS_GDT     I      27     I      27     14   16   47    13   13   13   14   14   16   18   23   28   32   36   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      28     A      28     14   16   48    13   13   13   14   14   16   18   23   28   31   34   37   41   50   56   59   62   65   68   70 
LCS_GDT     D      29     D      29     14   16   48    13   13   13   14   14   16   18   23   28   31   36   44   49   52   56   59   62   65   68   70 
LCS_GDT     H      30     H      30     14   16   48    13   13   13   14   14   16   18   23   31   37   40   44   49   52   56   59   62   65   68   70 
LCS_GDT     I      31     I      31     14   16   48    13   13   13   14   14   16   18   23   28   31   39   44   49   52   56   59   62   65   68   70 
LCS_GDT     Y      32     Y      32     14   16   48    13   13   13   14   14   16   18   21   26   31   34   37   41   46   52   55   60   65   68   70 
LCS_GDT     G      33     G      33      4   15   48     3    5    7    9   11   14   17   23   28   31   39   44   49   52   56   59   62   65   68   70 
LCS_GDT     K      34     K      34      4    8   48     3    4    4    6   10   15   23   27   32   37   40   44   49   52   56   59   62   65   68   70 
LCS_GDT     Y      35     Y      35      7    8   48     6    7    7    7    8   11   20   23   31   37   40   42   49   52   56   59   62   65   68   70 
LCS_GDT     D      36     D      36      7    8   48     6    7    7    7   10   13   15   18   27   35   40   44   49   52   56   59   62   65   68   70 
LCS_GDT     V      37     V      37      7    8   48     6    7    7    7    7   12   21   26   29   33   36   41   46   51   55   59   62   65   68   70 
LCS_GDT     F      38     F      38      7    8   48     6    7    7    9   11   14   20   27   32   35   40   44   49   52   56   59   62   65   68   70 
LCS_GDT     K      39     K      39      7    8   48     6    7    7    7    9   12   14   19   28   31   39   44   49   52   56   59   62   65   68   70 
LCS_GDT     R      40     R      40      7    8   48     6    7    7    7    8   14   18   24   29   31   36   40   44   50   52   57   61   65   68   69 
LCS_GDT     F      41     F      41      7    8   48     6    7    7    7    7    9   12   14   27   30   33   36   40   47   52   55   59   64   67   69 
LCS_GDT     K      42     K      42      5    5   48     3    4    7    9   11   14   19   27   30   34   38   44   46   51   56   59   62   65   68   70 
LCS_GDT     P      43     P      43      5    5   48     3    5    7    9   11   15   23   29   32   35   39   44   49   52   56   59   62   65   68   70 
LCS_GDT     L      44     L      44      5    8   48     3    4    5    5    9   12   19   27   32   35   39   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      45     A      45      3   11   48     1    3    6    9    9   16   23   29   32   35   39   44   47   52   56   59   62   65   68   70 
LCS_GDT     L      46     L      46      3   11   48     1    3    4    7    9   12   18   27   32   35   39   43   46   51   55   59   62   65   68   70 
LCS_GDT     G      47     G      47      9   12   48     0    3    6   18   20   23   29   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     I      48     I      48      9   13   48     8   11   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     D      49     D      49      9   13   48     8    8   10   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     Q      50     Q      50      9   13   48     8    8   10   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     D      51     D      51      9   13   48     8    8   15   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     L      52     L      52      9   13   48     8    8   11   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     I      53     I      53      9   13   48     8    8   10   16   23   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      54     A      54      9   13   48     8    8   10   16   22   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      55     A      55      9   20   48     8    8   10   15   19   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     L      56     L      56      3   20   48     3    3    6   16   22   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     P      57     P      57      3   20   48     3    3    8   14   22   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     Q      58     Q      58      3   20   48     3    3    9   16   21   26   31   36   40   42   43   44   47   50   55   58   61   65   68   70 
LCS_GDT     Y      59     Y      59     16   20   48     3    4   14   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     D      60     D      60     16   20   48     8   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      61     A      61     16   20   48    14   15   17   20   24   27   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      62     A      62     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     L      63     L      63     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     I      64     I      64     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      65     A      65     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     R      66     R      66     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     V      67     V      67     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     L      68     L      68     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      69     A      69     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     N      70     N      70     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     H      71     H      71     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     C      72     C      72     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     R      73     R      73     16   20   48    14   15   17   20   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     R      74     R      74     16   20   48    14   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     P      75     P      75     16   20   48     9    9    9    9   18   25   31   34   38   40   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     R      76     R      76      9   18   47     9    9    9    9   10   11   21   26   29   36   41   44   46   49   52   57   61   65   68   70 
LCS_GDT     Y      77     Y      77      9   10   46     9    9    9    9   10   17   23   28   34   42   43   44   47   50   52   58   61   64   68   70 
LCS_GDT     L      78     L      78      9   10   46     9    9    9   13   18   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     K      79     K      79      9   10   46     9   15   17   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A      80     A      80      9   10   43     9    9    9    9   11   13   21   24   30   34   39   43   47   50   51   55   60   64   65   70 
LCS_GDT     L      81     L      81      9   10   43     9    9    9    9   10   11   13   14   17   23   35   41   45   50   51   54   57   60   65   70 
LCS_GDT     A      82     A      82      9   10   43     9    9    9    9   10   15   23   31   38   42   43   44   49   50   52   58   61   64   68   70 
LCS_GDT     R      83     R      83      4   10   43     3    5    7   13   20   28   30   36   40   42   43   44   49   50   53   58   61   64   68   70 
LCS_GDT     G      84     G      84      5    7   43     3    3    5    6    9   15   20   25   29   35   41   43   47   50   51   54   57   60   65   70 
LCS_GDT     G      85     G      85      5    7   43     3    4    5    6    7    7    9   21   25   36   39   43   47   50   51   54   56   59   63   67 
LCS_GDT     K      86     K      86      5    7   43     3    4    5    6    7   15   20   25   26   31   39   43   47   50   51   54   56   58   61   63 
LCS_GDT     R      87     R      87      5    7   42     3    4    5    6    7    8   12   15   20   24   29   35   39   42   46   48   53   57   60   62 
LCS_GDT     F      88     F      88      5    7   42     3    4    5    6    7    8   10   16   20   25   31   36   39   43   46   48   53   57   60   62 
LCS_GDT     D      89     D      89      3    7   32     0    3    4    5    7    7    9   10   19   23   26   29   34   38   42   48   49   53   55   59 
LCS_GDT     L      90     L      90      3    5   25     3    3    8    9   12   16   19   24   26   28   34   36   38   39   44   48   50   53   56   59 
LCS_GDT     N      91     N      91      3    5   25     3    4    6   12   14   16   19   24   26   29   34   36   38   39   44   48   50   54   57   59 
LCS_GDT     N      92     N      92      4   11   25     3    4    6    9   13   16   19   21   26   29   34   36   38   39   44   48   52   57   61   65 
LCS_GDT     R      93     R      93      4   11   25     3    4    5    9   14   16   19   23   26   29   34   36   38   39   44   48   52   56   61   65 
LCS_GDT     F      94     F      94      5   11   25     3    4    6    7    9   14   19   21   26   29   34   36   38   43   50   51   56   59   63   67 
LCS_GDT     K      95     K      95      5   11   25     3    4    7    8   12   16   19   21   25   28   34   36   38   39   44   48   50   53   57   60 
LCS_GDT     G      96     G      96      5   11   25     3    5    7    9   13   16   19   24   26   29   34   36   38   39   44   48   52   58   61   65 
LCS_GDT     E      97     E      97      5   11   25     3    4    7   12   14   16   19   24   26   30   34   40   44   47   51   54   57   61   65   70 
LCS_GDT     V      98     V      98      5   12   25     3    5    7   12   14   16   19   24   28   35   39   43   47   50   51   55   60   64   68   70 
LCS_GDT     T      99     T      99      9   12   25     9    9    9   10   12   17   22   28   32   36   41   43   47   50   51   55   60   64   68   70 
LCS_GDT     P     100     P     100      9   12   25     9    9    9   15   24   28   31   36   40   42   43   44   49   52   55   59   62   65   68   70 
LCS_GDT     E     101     E     101      9   12   25     9    9   11   18   23   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     E     102     E     102      9   12   25     9    9    9   14   22   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     Q     103     Q     103      9   12   25     9    9    9   18   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A     104     A     104      9   12   25     9    9    9   12   24   26   31   35   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     I     105     I     105      9   12   25     9    9    9   12   14   17   31   34   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     A     106     A     106      9   12   25     9    9   14   21   24   28   31   36   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     Q     107     Q     107      9   12   25     9    9    9   10   16   17   21   31   34   37   43   44   47   49   55   59   62   65   68   70 
LCS_GDT     N     108     N     108      3   12   25     1    4    5   10   16   25   27   32   40   42   43   44   49   52   56   59   62   65   68   70 
LCS_GDT     H     109     H     109      3   12   25     3    4    6   10   18   25   29   35   40   42   43   44   47   50   55   58   62   65   68   70 
LCS_GDT     P     110     P     110      4   12   25     4    4    7    9   12   19   23   26   32   37   43   44   47   50   52   55   58   64   65   68 
LCS_GDT     F     111     F     111      4    7   25     4    4    7    8   11   16   21   24   32   36   39   43   47   48   50   53   56   59   63   66 
LCS_GDT     V     112     V     112      5    7   25     4    5    7    7    7    7    7    9   12   13   15   16   17   19   35   39   45   49   54   57 
LCS_GDT     Q     113     Q     113      5    7   25     4    5    7   10   11   12   15   17   22   23   27   30   35   39   43   48   50   53   56   59 
LCS_GDT     Q     114     Q     114      5    7   25     4    5    7    7    7    7    7    9   12   14   15   24   31   35   40   44   50   53   54   57 
LCS_GDT     A     115     A     115      5    7   18     4    5    7    7    7    7    7    9   12   13   14   16   16   17   18   22   24   31   35   37 
LCS_GDT     L     116     L     116      5    7   18     3    5    7    7    7    7    7    9   12   13   15   16   17   17   18   18   18   18   28   37 
LCS_AVERAGE  LCS_A:  17.70  (   8.35   11.72   33.03 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     17     21     24     28     31     36     40     42     43     44     49     52     56     59     62     65     68     70 
GDT PERCENT_CA  12.07  12.93  14.66  18.10  20.69  24.14  26.72  31.03  34.48  36.21  37.07  37.93  42.24  44.83  48.28  50.86  53.45  56.03  58.62  60.34
GDT RMS_LOCAL    0.24   0.31   0.81   1.42   1.53   2.05   2.21   2.58   2.88   3.09   3.18   3.30   4.49   4.67   5.27   5.38   5.57   5.74   5.97   6.13
GDT RMS_ALL_CA  16.52  16.58  16.44  16.74  16.72  16.94  16.88  17.00  17.00  16.98  16.97  16.95  17.39  17.40  17.47  17.50  17.51  17.57  17.53  17.46

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         44.182
LGA    T       2      T       2         45.477
LGA    Q       3      Q       3         44.477
LGA    E       4      E       4         43.384
LGA    T       5      T       5         42.361
LGA    A       6      A       6         38.210
LGA    L       7      L       7         35.316
LGA    G       8      G       8         35.201
LGA    A       9      A       9         33.640
LGA    A      10      A      10         29.507
LGA    L      11      L      11         28.337
LGA    K      12      K      12         29.323
LGA    S      13      S      13         26.904
LGA    A      14      A      14         24.144
LGA    V      15      V      15         24.781
LGA    Q      16      Q      16         26.304
LGA    T      17      T      17         23.463
LGA    M      18      M      18         20.281
LGA    S      19      S      19         22.830
LGA    K      20      K      20         23.789
LGA    K      21      K      21         24.553
LGA    K      22      K      22         21.374
LGA    Q      23      Q      23         17.892
LGA    T      24      T      24         18.782
LGA    E      25      E      25         19.105
LGA    M      26      M      26         14.794
LGA    I      27      I      27         13.027
LGA    A      28      A      28         15.514
LGA    D      29      D      29         14.821
LGA    H      30      H      30         10.293
LGA    I      31      I      31         10.896
LGA    Y      32      Y      32         14.908
LGA    G      33      G      33         14.559
LGA    K      34      K      34          9.504
LGA    Y      35      Y      35          9.575
LGA    D      36      D      36         10.442
LGA    V      37      V      37         10.121
LGA    F      38      F      38         10.161
LGA    K      39      K      39         14.725
LGA    R      40      R      40         16.455
LGA    F      41      F      41         15.295
LGA    K      42      K      42         13.044
LGA    P      43      P      43          9.591
LGA    L      44      L      44          9.868
LGA    A      45      A      45          8.250
LGA    L      46      L      46          8.011
LGA    G      47      G      47          3.666
LGA    I      48      I      48          0.737
LGA    D      49      D      49          1.629
LGA    Q      50      Q      50          1.929
LGA    D      51      D      51          1.703
LGA    L      52      L      52          1.745
LGA    I      53      I      53          3.030
LGA    A      54      A      54          3.592
LGA    A      55      A      55          3.811
LGA    L      56      L      56          3.831
LGA    P      57      P      57          3.597
LGA    Q      58      Q      58          3.610
LGA    Y      59      Y      59          2.213
LGA    D      60      D      60          2.904
LGA    A      61      A      61          3.891
LGA    A      62      A      62          2.898
LGA    L      63      L      63          2.275
LGA    I      64      I      64          2.665
LGA    A      65      A      65          2.576
LGA    R      66      R      66          1.485
LGA    V      67      V      67          1.191
LGA    L      68      L      68          1.670
LGA    A      69      A      69          1.990
LGA    N      70      N      70          1.551
LGA    H      71      H      71          1.302
LGA    C      72      C      72          1.983
LGA    R      73      R      73          2.217
LGA    R      74      R      74          1.944
LGA    P      75      P      75          5.739
LGA    R      76      R      76          7.152
LGA    Y      77      Y      77          5.596
LGA    L      78      L      78          3.459
LGA    K      79      K      79          2.124
LGA    A      80      A      80          8.075
LGA    L      81      L      81          9.599
LGA    A      82      A      82          5.999
LGA    R      83      R      83          3.946
LGA    G      84      G      84          9.101
LGA    G      85      G      85         10.302
LGA    K      86      K      86         11.249
LGA    R      87      R      87         14.846
LGA    F      88      F      88         15.092
LGA    D      89      D      89         20.756
LGA    L      90      L      90         20.524
LGA    N      91      N      91         20.264
LGA    N      92      N      92         16.450
LGA    R      93      R      93         16.251
LGA    F      94      F      94         12.955
LGA    K      95      K      95         17.166
LGA    G      96      G      96         13.837
LGA    E      97      E      97          9.876
LGA    V      98      V      98          7.445
LGA    T      99      T      99          7.296
LGA    P     100      P     100          3.562
LGA    E     101      E     101          1.384
LGA    E     102      E     102          2.925
LGA    Q     103      Q     103          3.636
LGA    A     104      A     104          4.682
LGA    I     105      I     105          4.424
LGA    A     106      A     106          2.233
LGA    Q     107      Q     107          7.528
LGA    N     108      N     108          5.942
LGA    H     109      H     109          4.840
LGA    P     110      P     110          7.663
LGA    F     111      F     111         10.399
LGA    V     112      V     112         17.005
LGA    Q     113      Q     113         17.268
LGA    Q     114      Q     114         19.253
LGA    A     115      A     115         23.550
LGA    L     116      L     116         26.462

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  141  116    4.0     36    2.58    28.233    24.240     1.345

LGA_LOCAL      RMSD =  2.577  Number of atoms =   36  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 17.067  Number of atoms =  116 
Std_ALL_ATOMS  RMSD = 15.283  (standard rmsd on all 116 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.422380 * X  +  -0.139315 * Y  +   0.895649 * Z  + -73.702667
  Y_new =   0.084446 * X  +   0.977772 * Y  +   0.191913 * Z  +   3.359502
  Z_new =  -0.902477 * X  +   0.156694 * Y  +  -0.401227 * Z  + -15.844748 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.769271   -0.372322  [ DEG:   158.6675    -21.3325 ]
  Theta =   1.125485    2.016108  [ DEG:    64.4855    115.5145 ]
  Phi   =   2.944266   -0.197326  [ DEG:   168.6940    -11.3060 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS393_5                                  
REMARK     2: T0360.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0360TS393_5.T0360.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  141  116   4.0   36   2.58  24.240    15.28
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS393_5
PFRMAT TS
TARGET T0360
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1     -89.299  16.383   3.307  1.00 25.00           C
ATOM      2  CA  THR     2     -85.561  16.756   4.191  1.00 25.00           C
ATOM      3  CA  GLN     3     -82.833  14.982   6.231  1.00 25.00           C
ATOM      4  CA  GLU     4     -79.156  14.567   7.219  1.00 25.00           C
ATOM      5  CA  THR     5     -80.043  11.493   9.325  1.00 25.00           C
ATOM      6  CA  ALA     6     -81.980  10.002   6.376  1.00 25.00           C
ATOM      7  CA  LEU     7     -78.989  10.621   4.066  1.00 25.00           C
ATOM      8  CA  GLY     8     -76.659   8.924   6.587  1.00 25.00           C
ATOM      9  CA  ALA     9     -79.028   5.922   6.794  1.00 25.00           C
ATOM     10  CA  ALA    10     -79.103   5.688   2.972  1.00 25.00           C
ATOM     11  CA  LEU    11     -75.277   5.799   2.865  1.00 25.00           C
ATOM     12  CA  LYS    12     -75.099   3.021   5.496  1.00 25.00           C
ATOM     13  CA  SER    13     -77.557   0.902   3.460  1.00 25.00           C
ATOM     14  CA  ALA    14     -75.449   1.443   0.307  1.00 25.00           C
ATOM     15  CA  VAL    15     -72.293   0.400   2.209  1.00 25.00           C
ATOM     16  CA  GLN    16     -74.064  -2.751   3.473  1.00 25.00           C
ATOM     17  CA  THR    17     -75.175  -3.588  -0.096  1.00 25.00           C
ATOM     18  CA  MET    18     -76.740  -6.652   1.557  1.00 25.00           C
ATOM     19  CA  SER    19     -73.897  -8.473  -0.189  1.00 25.00           C
ATOM     20  CA  LYS    20     -72.383  -9.568  -3.449  1.00 25.00           C
ATOM     21  CA  LYS    21     -70.711 -12.838  -4.537  1.00 25.00           C
ATOM     22  CA  LYS    22     -74.135 -14.534  -4.787  1.00 25.00           C
ATOM     23  CA  GLN    23     -75.451 -11.624  -6.899  1.00 25.00           C
ATOM     24  CA  THR    24     -72.404 -11.884  -9.203  1.00 25.00           C
ATOM     25  CA  GLU    25     -72.978 -15.652  -9.578  1.00 25.00           C
ATOM     26  CA  MET    26     -76.660 -15.031 -10.431  1.00 25.00           C
ATOM     27  CA  ILE    27     -75.639 -12.425 -13.047  1.00 25.00           C
ATOM     28  CA  ALA    28     -73.145 -14.900 -14.573  1.00 25.00           C
ATOM     29  CA  ASP    29     -75.865 -17.593 -14.715  1.00 25.00           C
ATOM     30  CA  HIS    30     -78.248 -15.131 -16.426  1.00 25.00           C
ATOM     31  CA  ILE    31     -75.533 -14.241 -18.977  1.00 25.00           C
ATOM     32  CA  TYR    32     -74.927 -17.959 -19.667  1.00 25.00           C
ATOM     33  CA  GLY    33     -71.401 -18.302 -20.946  1.00 25.00           C
ATOM     34  CA  LYS    34     -70.421 -14.988 -19.351  1.00 25.00           C
ATOM     35  CA  TYR    35     -67.121 -13.479 -20.576  1.00 25.00           C
ATOM     36  CA  ASP    36     -67.769 -14.854 -24.091  1.00 25.00           C
ATOM     37  CA  VAL    37     -71.293 -13.357 -24.055  1.00 25.00           C
ATOM     38  CA  PHE    38     -69.871  -9.974 -22.961  1.00 25.00           C
ATOM     39  CA  LYS    39     -67.290 -10.118 -25.786  1.00 25.00           C
ATOM     40  CA  ARG    40     -70.058 -10.922 -28.308  1.00 25.00           C
ATOM     41  CA  PHE    41     -72.128  -7.971 -27.015  1.00 25.00           C
ATOM     42  CA  LYS    42     -69.852  -5.997 -29.340  1.00 25.00           C
ATOM     43  CA  PRO    43     -70.090  -2.509 -27.971  1.00 25.00           C
ATOM     44  CA  LEU    44     -70.410  -1.016 -31.502  1.00 25.00           C
ATOM     45  CA  ALA    45     -73.617  -3.042 -32.027  1.00 25.00           C
ATOM     46  CA  LEU    46     -75.605   0.242 -32.294  1.00 25.00           C
ATOM     47  CA  GLY    47     -75.232   0.217 -28.537  1.00 25.00           C
ATOM     48  CA  ILE    48     -74.587   0.230 -24.731  1.00 25.00           C
ATOM     49  CA  ASP    49     -76.469   3.040 -22.933  1.00 25.00           C
ATOM     50  CA  GLN    50     -79.046   3.158 -25.763  1.00 25.00           C
ATOM     51  CA  ASP    51     -79.499  -0.638 -25.543  1.00 25.00           C
ATOM     52  CA  LEU    52     -79.993  -0.384 -21.753  1.00 25.00           C
ATOM     53  CA  ILE    53     -82.598   2.379 -22.254  1.00 25.00           C
ATOM     54  CA  ALA    54     -84.429   0.219 -24.833  1.00 25.00           C
ATOM     55  CA  ALA    55     -84.418  -2.740 -22.401  1.00 25.00           C
ATOM     56  CA  LEU    56     -88.089  -3.149 -21.372  1.00 25.00           C
ATOM     57  CA  PRO    57     -91.807  -3.051 -21.835  1.00 25.00           C
ATOM     58  CA  GLN    58     -92.452  -1.287 -18.478  1.00 25.00           C
ATOM     59  CA  TYR    59     -89.436  -2.505 -16.508  1.00 25.00           C
ATOM     60  CA  ASP    60     -88.811   1.097 -15.455  1.00 25.00           C
ATOM     61  CA  ALA    61     -86.051   0.926 -17.982  1.00 25.00           C
ATOM     62  CA  ALA    62     -85.296   4.598 -17.196  1.00 25.00           C
ATOM     63  CA  LEU    63     -83.990   3.614 -13.733  1.00 25.00           C
ATOM     64  CA  ILE    64     -81.761   0.928 -15.310  1.00 25.00           C
ATOM     65  CA  ALA    65     -80.404   3.489 -17.814  1.00 25.00           C
ATOM     66  CA  ARG    66     -79.668   5.930 -14.956  1.00 25.00           C
ATOM     67  CA  VAL    67     -77.843   3.167 -13.034  1.00 25.00           C
ATOM     68  CA  LEU    68     -75.777   2.331 -16.148  1.00 25.00           C
ATOM     69  CA  ALA    69     -74.883   6.030 -16.578  1.00 25.00           C
ATOM     70  CA  ASN    70     -73.822   6.226 -12.903  1.00 25.00           C
ATOM     71  CA  HIS    71     -71.648   3.103 -13.339  1.00 25.00           C
ATOM     72  CA  CYS    72     -70.026   4.637 -16.451  1.00 25.00           C
ATOM     73  CA  ARG    73     -69.327   7.871 -14.523  1.00 25.00           C
ATOM     74  CA  ARG    74     -67.754   5.860 -11.669  1.00 25.00           C
ATOM     75  CA  PRO    75     -65.563   3.969 -14.177  1.00 25.00           C
ATOM     76  CA  ARG    76     -64.460   7.282 -15.749  1.00 25.00           C
ATOM     77  CA  TYR    77     -63.598   8.667 -12.284  1.00 25.00           C
ATOM     78  CA  LEU    78     -61.563   5.518 -11.503  1.00 25.00           C
ATOM     79  CA  LYS    79     -59.695   5.871 -14.828  1.00 25.00           C
ATOM     80  CA  ALA    80     -58.942   9.543 -14.042  1.00 25.00           C
ATOM     81  CA  LEU    81     -57.635   8.560 -10.580  1.00 25.00           C
ATOM     82  CA  ALA    82     -55.405   5.875 -12.157  1.00 25.00           C
ATOM     83  CA  ARG    83     -54.125   4.101 -15.246  1.00 25.00           C
ATOM     84  CA  GLY    84     -53.882   0.670 -13.559  1.00 25.00           C
ATOM     85  CA  GLY    85     -57.696   0.846 -13.718  1.00 25.00           C
ATOM     86  CA  LYS    86     -58.784  -2.794 -14.403  1.00 25.00           C
ATOM     87  CA  ARG    87     -55.902  -5.088 -13.420  1.00 25.00           C
ATOM     88  CA  PHE    88     -57.400  -8.577 -13.685  1.00 25.00           C
ATOM     89  CA  ASP    89     -54.133 -10.482 -13.779  1.00 25.00           C
ATOM     90  CA  LEU    90     -53.791  -9.386 -17.421  1.00 25.00           C
ATOM     91  CA  ASN    91     -52.132 -11.254 -20.269  1.00 25.00           C
ATOM     92  CA  ASN    92     -52.057  -9.924 -23.851  1.00 25.00           C
ATOM     93  CA  ARG    93     -51.092  -6.542 -25.423  1.00 25.00           C
ATOM     94  CA  PHE    94     -52.257  -4.789 -28.633  1.00 25.00           C
ATOM     95  CA  LYS    95     -50.029  -2.791 -30.997  1.00 25.00           C
ATOM     96  CA  GLY    96     -51.217   0.735 -30.034  1.00 25.00           C
ATOM     97  CA  GLU    97     -52.581   2.060 -26.740  1.00 25.00           C
ATOM     98  CA  VAL    98     -54.152   4.678 -24.458  1.00 25.00           C
ATOM     99  CA  THR    99     -54.100   8.364 -23.646  1.00 25.00           C
ATOM    100  CA  PRO   100     -55.884  11.522 -24.648  1.00 25.00           C
ATOM    101  CA  GLU   101     -59.464  10.434 -25.468  1.00 25.00           C
ATOM    102  CA  GLU   102     -59.725   8.660 -22.083  1.00 25.00           C
ATOM    103  CA  GLN   103     -58.458  11.807 -20.308  1.00 25.00           C
ATOM    104  CA  ALA   104     -61.038  13.932 -22.177  1.00 25.00           C
ATOM    105  CA  ILE   105     -63.812  11.490 -21.172  1.00 25.00           C
ATOM    106  CA  ALA   106     -62.670  11.657 -17.520  1.00 25.00           C
ATOM    107  CA  GLN   107     -62.695  15.484 -17.662  1.00 25.00           C
ATOM    108  CA  ASN   108     -62.529  17.474 -14.440  1.00 25.00           C
ATOM    109  CA  HIS   109     -64.102  16.012 -11.340  1.00 25.00           C
ATOM    110  CA  PRO   110     -64.306  19.552  -9.856  1.00 25.00           C
ATOM    111  CA  PHE   111     -67.004  18.175  -7.514  1.00 25.00           C
ATOM    112  CA  VAL   112     -69.064  21.371  -7.966  1.00 25.00           C
ATOM    113  CA  GLN   113     -68.728  21.080 -11.769  1.00 25.00           C
ATOM    114  CA  GLN   114     -69.862  17.425 -11.614  1.00 25.00           C
ATOM    115  CA  ALA   115     -72.882  18.427  -9.482  1.00 25.00           C
ATOM    116  CA  LEU   116     -73.776  21.175 -11.995  1.00 25.00           C
ATOM    117  CA  GLN   117     -73.522  18.659 -14.872  1.00 25.00           C
ATOM    118  CA  GLN   118     -75.793  16.226 -12.978  1.00 25.00           C
ATOM    119  CA  GLN   119     -78.334  19.028 -12.376  1.00 25.00           C
ATOM    120  CA  SER   120     -78.259  19.929 -16.098  1.00 25.00           C
ATOM    121  CA  ALA   121     -78.820  16.256 -17.024  1.00 25.00           C
ATOM    122  CA  GLN   122     -81.778  16.071 -14.599  1.00 25.00           C
ATOM    123  CA  ALA   123     -83.266  19.250 -16.133  1.00 25.00           C
ATOM    124  CA  ALA   124     -82.868  17.771 -19.643  1.00 25.00           C
ATOM    125  CA  ALA   125     -84.596  14.547 -18.508  1.00 25.00           C
ATOM    126  CA  GLU   126     -87.470  16.586 -17.009  1.00 25.00           C
ATOM    127  CA  THR   127     -87.822  18.543 -20.283  1.00 25.00           C
ATOM    128  CA  LEU   128     -87.901  15.266 -22.262  1.00 25.00           C
ATOM    129  CA  SER   129     -90.599  13.888 -19.919  1.00 25.00           C
ATOM    130  CA  VAL   130     -92.659  17.085 -20.371  1.00 25.00           C
ATOM    131  CA  GLU   131     -92.323  16.793 -24.175  1.00 25.00           C
ATOM    132  CA  ALA   132     -93.457  13.139 -24.019  1.00 25.00           C
ATOM    133  CA  GLU   133     -96.477  14.140 -21.887  1.00 25.00           C
ATOM    134  CA  ALA   134     -97.371  16.889 -24.401  1.00 25.00           C
ATOM    135  CA  ALA   135     -97.117  14.373 -27.278  1.00 25.00           C
ATOM    136  CA  GLU   136     -99.389  11.939 -25.383  1.00 25.00           C
ATOM    137  CA  SER   137     -97.512   9.379 -27.540  1.00 25.00           C
ATOM    138  CA  SER   138     -95.075   7.942 -30.083  1.00 25.00           C
ATOM    139  CA  ALA   139     -93.279   7.942 -33.468  1.00 25.00           C
ATOM    140  CA  ALA   140     -90.283   5.732 -34.289  1.00 25.00           C
ATOM    141  CA  GLU   141     -87.301   3.364 -34.676  1.00 25.00           C
TER
END
