
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  151 (  151),  selected  144 , name T0362TS393_2
# Molecule2: number of CA atoms  144 ( 1169),  selected  144 , name T0362.pdb
# PARAMETERS: T0362TS393_2.T0362.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   144         1 - 144         4.91     4.91
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        16 - 48          1.91     5.92
  LCS_AVERAGE:     14.79

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        25 - 46          0.99     6.30
  LONGEST_CONTINUOUS_SEGMENT:    22        26 - 47          0.95     6.12
  LONGEST_CONTINUOUS_SEGMENT:    22        27 - 48          0.88     6.30
  LCS_AVERAGE:      6.03

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  144
LCS_GDT     M       1     M       1      4    5  144     1    3    4    5   12   34   52   67   79   90   97  113  121  125  127  131  133  136  138  140 
LCS_GDT     N       2     N       2      4    5  144     3    3    5    6   14   19   37   53   68   82   92  102  116  124  126  128  133  135  138  140 
LCS_GDT     P       3     P       3      4    5  144     3    3    4    5    8    9   10   11   17   21   41   45   80   91   99  106  121  130  135  136 
LCS_GDT     E       4     E       4      4    7  144     3    3    5    9   12   30   46   65   78   89  110  117  121  125  127  131  133  136  138  140 
LCS_GDT     N       5     N       5      3   11  144     3    3   15   29   44   69   87   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     W       6     W       6      4   11  144     3    6   16   29   44   69   87   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L       7     L       7      5   11  144     3    4   14   22   35   54   74   90  105  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L       8     L       8      5   11  144     3    4   20   51   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L       9     L       9      5   11  144     4   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      10     R      10      5   11  144     4   16   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      11     R      11      5   11  144     4   10   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     V      12     V      12      5   11  144     4   10   38   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     V      13     V      13      5   11  144     3    6   13   36   63   73   88   96  107  115  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      14     R      14      5   11  144     3    6   21   46   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F      15     F      15      3   11  144     3    3    3    6   18   28   34   64   79   95  103  112  119  125  129  131  133  136  138  140 
LCS_GDT     G      16     G      16      4   33  144     3   13   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     D      17     D      17      4   33  144     8   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     T      18     T      18      5   33  144     6   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     D      19     D      19      5   33  144     3    8   33   56   67   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      20     A      20      5   33  144     3   12   30   52   66   79   89   97  107  115  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      21     A      21      5   33  144     3    6    9   28   43   64   75   90   97  106  115  120  122  125  129  131  133  136  138  140 
LCS_GDT     G      22     G      22      5   33  144     1    6    7   17   25   30   62   80   93  103  110  119  122  125  127  131  133  136  138  140 
LCS_GDT     V      23     V      23      5   33  144     4    5   21   44   66   80   89   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     M      24     M      24     17   33  144     4   12   27   52   67   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H      25     H      25     22   33  144     4   12   36   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F      26     F      26     22   33  144     4   12   30   54   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H      27     H      27     22   33  144     3   18   25   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     Q      28     Q      28     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      29     L      29     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F      30     F      30     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      31     R      31     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     W      32     W      32     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     C      33     C      33     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H      34     H      34     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      35     E      35     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     S      36     S      36     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     W      37     W      37     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      38     E      38     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      39     E      39     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     S      40     S      40     22   33  144    12   22   38   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      41     L      41     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      42     E      42     22   33  144    12   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     S      43     S      43     22   33  144    12   22   34   52   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     Y      44     Y      44     22   33  144    12   22   26   49   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     G      45     G      45     22   33  144    11   22   34   49   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      46     L      46     22   33  144     4   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     N      47     N      47     22   33  144     3    3   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     P      48     P      48     22   33  144     5   18   32   55   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      49     A      49      3   28  144     3    3   11   32   53   68   81   95  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     D      50     D      50      4   28  144     3    4   12   25   38   55   74   84   96  110  116  122  123  125  127  131  133  136  138  140 
LCS_GDT     I      51     I      51      4    7  144     3    4    6    7    9    9   35   42   53   75   95  102  114  121  126  128  133  136  138  140 
LCS_GDT     F      52     F      52      4    7  144     3    4    6   10   16   20   23   29   40   51   72   85  101  116  118  130  133  136  138  140 
LCS_GDT     P      53     P      53      4    7  144     3    4    6    7    9   20   22   26   30   33   45   49   60   70   95  100  118  125  128  136 
LCS_GDT     G      54     G      54      4    7  144     3    3    6    9   16   20   23   29   34   47   51   62   72   90  107  120  127  131  137  138 
LCS_GDT     S      55     S      55      4    7  144     3    4    6    7   11   21   30   39   51   83  100  110  119  125  129  131  133  136  138  140 
LCS_GDT     R      56     R      56      4    7  144     3    4    6    7    9   10   26   48   70   75   89  102  115  122  129  131  133  136  138  140 
LCS_GDT     K      57     K      57      4    7  144     3    4    4    5    6   16   28   35   45   75   89   95  107  121  129  130  133  136  138  140 
LCS_GDT     S      58     S      58      4    7  144     3    4    4   13   17   23   30   39   57   85  100  110  119  125  129  131  133  136  138  140 
LCS_GDT     E      59     E      59      3    7  144     3    3    4    7   17   38   51   70   75   88  100  111  119  125  129  131  133  136  138  140 
LCS_GDT     V      60     V      60      3    7  144     3    3    4   15   27   45   61   71   82   95  106  112  121  125  129  131  133  136  138  140 
LCS_GDT     T      61     T      61      4    7  144     3    3   11   28   43   62   78   86   97  104  112  119  122  125  129  131  133  136  138  140 
LCS_GDT     P      62     P      62      4    7  144     3   11   33   52   67   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      63     E      63      5   14  144     3    6   22   34   61   76   88   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     V      64     V      64      5   14  144     3    7   13   29   54   72   86   98  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      65     A      65      5   14  144     3    8   16   25   44   67   80   94  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      66     L      66      5   26  144     3    8   16   21   38   63   79   94  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     P      67     P      67      5   26  144     3   11   22   44   62   77   88   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     I      68     I      68      5   27  144     3   11   22   44   64   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     I      69     I      69      5   27  144     3   11   19   29   58   76   88   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H      70     H      70      5   27  144     3   14   35   55   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     C      71     C      71      5   27  144     2   14   35   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     Q      72     Q      72      9   27  144     3   18   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      73     A      73      9   27  144     3   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     D      74     D      74     10   27  144     4   18   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F      75     F      75     13   27  144     4   14   37   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      76     R      76     13   27  144     5   17   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      77     R      77     13   27  144     3   12   30   55   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     P      78     P      78     13   27  144     8   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     I      79     I      79     13   27  144     8   22   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H      80     H      80     13   27  144    11   22   39   55   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     T      81     T      81     13   27  144     4   14   32   52   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     G      82     G      82     13   27  144     5   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     D      83     D      83     13   27  144     6   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      84     A      84     13   27  144     3   12   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      85     L      85     13   27  144     3   16   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A      86     A      86     13   27  144     8   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     M      87     M      87     13   27  144     8   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      88     E      88      7   27  144     6   19   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      89     L      89      6   27  144     3   13   34   54   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      90     R      90      6   27  144     3   13   30   51   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     P      91     P      91      6   27  144     3   13   34   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E      92     E      92      4   27  144     3    5   16   39   67   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R      93     R      93      4   27  144     3    4    6   17   38   70   87   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L      94     L      94      5   27  144     3    9   32   53   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     N      95     N      95      5   27  144     3    9   18   46   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     P      96     P      96      5   14  144     3    4    7   11   20   48   63   85   99  111  119  122  123  125  129  130  133  136  138  140 
LCS_GDT     N      97     N      97      5   22  144     3   11   23   48   68   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     S      98     S      98      6   24  144     3    9   26   51   67   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F      99     F      99      6   24  144     3    9   22   51   64   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     Q     100     Q     100      6   24  144     3    5   13   29   52   67   82   94  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     V     101     V     101      6   24  144     4   13   38   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H     102     H     102      6   24  144     3    5   14   31   59   70   88   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F     103     F     103      6   24  144     4   13   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E     104     E     104      6   24  144     4   13   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     F     105     F     105      6   24  144     4   11   28   52   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R     106     R     106      6   24  144     2   13   35   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     C     107     C     107      6   24  144     3   11   22   45   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E     108     E     108      6   24  144     3    9   22   51   67   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E     109     E     109      3   24  144     3    4    9   14   33   61   80   97  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     Q     110     Q     110      4   24  144     4   11   36   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     I     111     I     111      4   24  144     3    9   34   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A     112     A     112      4   24  144     8   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A     113     A     113      4   24  144     3   18   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H     114     H     114      4   24  144     3    5   12   25   63   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A     115     A     115      4   24  144     4   18   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L     116     L     116      4   24  144     6   20   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     I     117     I     117      4   24  144     4   11   29   52   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R     118     R     118      4   24  144     4    7   22   44   61   76   88   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H     119     H     119      4   24  144     4    5    9   18   44   63   79   94  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L     120     L     120      4   24  144     2    6   16   28   44   67   83   96  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A     121     A     121      4   24  144     3    6   16   19   44   64   79   94  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     I     122     I     122      4   12  144     3    6    9   20   34   61   79   94  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     N     123     N     123      4   12  144     3    3    6    8   15   36   48   70   93  103  115  121  123  124  127  129  132  136  138  140 
LCS_GDT     A     124     A     124      4   12  144     4    8   22   49   64   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     Q     125     Q     125      4   12  144     4    5    9   26   40   61   79   94  107  116  120  122  123  124  127  129  133  136  138  140 
LCS_GDT     T     126     T     126      4   12  144     4    6   11   27   42   69   83   94  107  116  120  122  123  125  127  130  133  136  138  140 
LCS_GDT     R     127     R     127      4   10  144     4   18   30   51   64   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     H     128     H     128      4   10  144     3    7   26   51   62   80   88   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R     129     R     129      4   10  144     5   15   30   51   67   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     C     130     C     130      4   10  144     3   11   35   55   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A     131     A     131      4   10  144     3   18   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L     132     L     132      4   10  144     2    9   37   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     P     133     P     133      4   10  144     3   11   40   56   69   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E     134     E     134      4   10  144     3   11   34   49   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     G     135     G     135      3   10  144     3    3    6   21   29   48   60   75   86   99  109  117  122  125  129  131  133  136  138  140 
LCS_GDT     I     136     I     136      9   10  144     8   13   34   49   66   82   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     D     137     D     137      9    9  144     8    9   22   51   65   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     R     138     R     138      9    9  144     8    8    9   10   12   13   36   59  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     W     139     W     139      9    9  144     8    8   12   19   40   59   78   92  104  113  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     L     140     L     140      9    9  144     8    8    9   10   16   44   76   90  104  114  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     E     141     E     141      9    9  144     8   13   32   51   69   80   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     A     142     A     142      9    9  144     8    8   17   49   64   81   90   99  107  116  120  122  123  125  129  131  133  136  138  140 
LCS_GDT     S     143     S     143      9    9  144     8    8    9   10   12   13   15   29   40   57   73   84  109  125  126  129  133  136  138  140 
LCS_GDT     G     144     G     144      9    9  144     0    3    3   10   12   13   15   19   23   27   32   47   49   73   89  121  128  130  135  137 
LCS_AVERAGE  LCS_A:  40.27  (   6.03   14.79  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     22     40     56     69     82     90     99    107    116    120    122    123    125    129    131    133    136    138    140 
GDT PERCENT_CA   8.33  15.28  27.78  38.89  47.92  56.94  62.50  68.75  74.31  80.56  83.33  84.72  85.42  86.81  89.58  90.97  92.36  94.44  95.83  97.22
GDT RMS_LOCAL    0.21   0.57   1.12   1.39   1.63   1.88   2.12   2.37   2.59   2.93   3.03   3.12   3.17   3.39   3.83   3.93   4.03   4.13   4.27   4.43
GDT RMS_ALL_CA   5.72   6.03   5.51   5.34   5.27   5.25   5.17   5.13   5.08   5.15   5.11   5.11   5.13   5.03   4.96   4.93   4.94   4.95   4.93   4.92

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.819
LGA    N       2      N       2         10.184
LGA    P       3      P       3         13.424
LGA    E       4      E       4          8.390
LGA    N       5      N       5          3.925
LGA    W       6      W       6          4.026
LGA    L       7      L       7          5.341
LGA    L       8      L       8          3.357
LGA    L       9      L       9          1.838
LGA    R      10      R      10          2.794
LGA    R      11      R      11          2.902
LGA    V      12      V      12          3.237
LGA    V      13      V      13          4.579
LGA    R      14      R      14          3.767
LGA    F      15      F      15          8.094
LGA    G      16      G      16          2.566
LGA    D      17      D      17          1.681
LGA    T      18      T      18          1.982
LGA    D      19      D      19          2.826
LGA    A      20      A      20          4.409
LGA    A      21      A      21          6.501
LGA    G      22      G      22          7.364
LGA    V      23      V      23          3.664
LGA    M      24      M      24          3.423
LGA    H      25      H      25          2.685
LGA    F      26      F      26          2.821
LGA    H      27      H      27          1.749
LGA    Q      28      Q      28          0.834
LGA    L      29      L      29          1.306
LGA    F      30      F      30          1.420
LGA    R      31      R      31          1.010
LGA    W      32      W      32          1.195
LGA    C      33      C      33          1.426
LGA    H      34      H      34          1.227
LGA    E      35      E      35          1.085
LGA    S      36      S      36          1.696
LGA    W      37      W      37          1.823
LGA    E      38      E      38          1.594
LGA    E      39      E      39          1.763
LGA    S      40      S      40          2.311
LGA    L      41      L      41          2.554
LGA    E      42      E      42          2.356
LGA    S      43      S      43          3.110
LGA    Y      44      Y      44          3.850
LGA    G      45      G      45          3.962
LGA    L      46      L      46          3.365
LGA    N      47      N      47          3.886
LGA    P      48      P      48          0.685
LGA    A      49      A      49          4.975
LGA    D      50      D      50          6.966
LGA    I      51      I      51         10.088
LGA    F      52      F      52         12.080
LGA    P      53      P      53         16.613
LGA    G      54      G      54         15.526
LGA    S      55      S      55         11.219
LGA    R      56      R      56         11.203
LGA    K      57      K      57         11.372
LGA    S      58      S      58         11.486
LGA    E      59      E      59         11.095
LGA    V      60      V      60         10.400
LGA    T      61      T      61          8.137
LGA    P      62      P      62          3.434
LGA    E      63      E      63          3.925
LGA    V      64      V      64          4.358
LGA    A      65      A      65          5.326
LGA    L      66      L      66          5.796
LGA    P      67      P      67          3.388
LGA    I      68      I      68          3.062
LGA    I      69      I      69          3.887
LGA    H      70      H      70          1.065
LGA    C      71      C      71          0.888
LGA    Q      72      Q      72          2.027
LGA    A      73      A      73          1.511
LGA    D      74      D      74          1.772
LGA    F      75      F      75          1.709
LGA    R      76      R      76          1.665
LGA    R      77      R      77          1.802
LGA    P      78      P      78          0.793
LGA    I      79      I      79          0.782
LGA    H      80      H      80          1.142
LGA    T      81      T      81          1.455
LGA    G      82      G      82          0.768
LGA    D      83      D      83          1.195
LGA    A      84      A      84          2.571
LGA    L      85      L      85          2.141
LGA    A      86      A      86          2.025
LGA    M      87      M      87          1.465
LGA    E      88      E      88          1.313
LGA    L      89      L      89          2.342
LGA    R      90      R      90          3.139
LGA    P      91      P      91          2.123
LGA    E      92      E      92          2.698
LGA    R      93      R      93          4.292
LGA    L      94      L      94          2.114
LGA    N      95      N      95          2.535
LGA    P      96      P      96          6.183
LGA    N      97      N      97          2.536
LGA    S      98      S      98          2.405
LGA    F      99      F      99          3.251
LGA    Q     100      Q     100          4.759
LGA    V     101      V     101          1.196
LGA    H     102      H     102          3.952
LGA    F     103      F     103          1.550
LGA    E     104      E     104          1.553
LGA    F     105      F     105          2.178
LGA    R     106      R     106          2.037
LGA    C     107      C     107          2.530
LGA    E     108      E     108          2.258
LGA    E     109      E     109          4.369
LGA    Q     110      Q     110          1.753
LGA    I     111      I     111          1.914
LGA    A     112      A     112          1.545
LGA    A     113      A     113          2.205
LGA    H     114      H     114          2.805
LGA    A     115      A     115          1.189
LGA    L     116      L     116          1.246
LGA    I     117      I     117          2.015
LGA    R     118      R     118          3.630
LGA    H     119      H     119          5.354
LGA    L     120      L     120          4.731
LGA    A     121      A     121          5.465
LGA    I     122      I     122          5.387
LGA    N     123      N     123          7.546
LGA    A     124      A     124          3.226
LGA    Q     125      Q     125          6.138
LGA    T     126      T     126          5.561
LGA    R     127      R     127          2.385
LGA    H     128      H     128          3.399
LGA    R     129      R     129          1.961
LGA    C     130      C     130          1.275
LGA    A     131      A     131          2.079
LGA    L     132      L     132          2.118
LGA    P     133      P     133          1.758
LGA    E     134      E     134          4.049
LGA    G     135      G     135          8.086
LGA    I     136      I     136          3.653
LGA    D     137      D     137          2.867
LGA    R     138      R     138          4.916
LGA    W     139      W     139          5.485
LGA    L     140      L     140          5.062
LGA    E     141      E     141          3.286
LGA    A     142      A     142          3.168
LGA    S     143      S     143          8.795
LGA    G     144      G     144         10.762

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  151  144    4.0     99    2.37    53.472    47.845     4.001

LGA_LOCAL      RMSD =  2.374  Number of atoms =   99  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.057  Number of atoms =  144 
Std_ALL_ATOMS  RMSD =  4.911  (standard rmsd on all 144 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.199318 * X  +  -0.785316 * Y  +  -0.586133 * Z  +  39.771828
  Y_new =  -0.758648 * X  +   0.254934 * Y  +  -0.599551 * Z  +  45.492527
  Z_new =   0.620262 * X  +   0.564170 * Y  +  -0.544966 * Z  +  12.634754 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.338881   -0.802711  [ DEG:   134.0080    -45.9920 ]
  Theta =  -0.669077   -2.472516  [ DEG:   -38.3353   -141.6647 ]
  Phi   =  -1.313875    1.827718  [ DEG:   -75.2795    104.7205 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0362TS393_2                                  
REMARK     2: T0362.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0362TS393_2.T0362.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  151  144   4.0   99   2.37  47.845     4.91
REMARK  ---------------------------------------------------------- 
MOLECULE T0362TS393_2
PFRMAT TS
TARGET T0362
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      44.024  44.549  37.056  1.00 25.00           C
ATOM      2  CA  ASN     2      45.847  46.566  34.400  1.00 25.00           C
ATOM      3  CA  PRO     3      46.781  49.893  32.842  1.00 25.00           C
ATOM      4  CA  GLU     4      43.391  50.298  31.187  1.00 25.00           C
ATOM      5  CA  ASN     5      40.433  48.908  29.311  1.00 25.00           C
ATOM      6  CA  TRP     6      40.153  48.018  25.635  1.00 25.00           C
ATOM      7  CA  LEU     7      39.408  51.627  24.497  1.00 25.00           C
ATOM      8  CA  LEU     8      42.710  51.251  22.588  1.00 25.00           C
ATOM      9  CA  LEU     9      43.076  50.602  18.894  1.00 25.00           C
ATOM     10  CA  ARG    10      46.103  52.685  17.873  1.00 25.00           C
ATOM     11  CA  ARG    11      48.453  53.659  15.055  1.00 25.00           C
ATOM     12  CA  VAL    12      49.822  56.593  13.015  1.00 25.00           C
ATOM     13  CA  VAL    13      47.598  56.354  10.017  1.00 25.00           C
ATOM     14  CA  ARG    14      50.468  57.904   8.159  1.00 25.00           C
ATOM     15  CA  PHE    15      51.117  55.294   5.492  1.00 25.00           C
ATOM     16  CA  GLY    16      53.179  57.731   3.428  1.00 25.00           C
ATOM     17  CA  ASP    17      49.923  59.719   3.367  1.00 25.00           C
ATOM     18  CA  THR    18      48.975  63.000   1.732  1.00 25.00           C
ATOM     19  CA  ASP    19      50.414  61.601  -1.499  1.00 25.00           C
ATOM     20  CA  ALA    20      49.195  64.108  -4.035  1.00 25.00           C
ATOM     21  CA  ALA    21      45.637  63.004  -3.349  1.00 25.00           C
ATOM     22  CA  GLY    22      44.011  64.183  -0.153  1.00 25.00           C
ATOM     23  CA  VAL    23      44.247  63.450   3.608  1.00 25.00           C
ATOM     24  CA  MET    24      44.546  59.608   3.402  1.00 25.00           C
ATOM     25  CA  HIS    25      44.455  59.086  -0.405  1.00 25.00           C
ATOM     26  CA  PHE    26      41.376  56.810  -0.233  1.00 25.00           C
ATOM     27  CA  HIS    27      44.108  54.135  -0.454  1.00 25.00           C
ATOM     28  CA  GLN    28      45.659  55.416   2.804  1.00 25.00           C
ATOM     29  CA  LEU    29      42.233  55.298   4.512  1.00 25.00           C
ATOM     30  CA  PHE    30      41.716  51.709   3.279  1.00 25.00           C
ATOM     31  CA  ARG    31      45.166  50.725   4.618  1.00 25.00           C
ATOM     32  CA  TRP    32      44.330  52.307   8.004  1.00 25.00           C
ATOM     33  CA  CYS    33      41.015  50.393   8.107  1.00 25.00           C
ATOM     34  CA  HIS    34      42.847  47.126   7.304  1.00 25.00           C
ATOM     35  CA  GLU    35      45.371  47.827  10.098  1.00 25.00           C
ATOM     36  CA  SER    36      42.507  48.500  12.550  1.00 25.00           C
ATOM     37  CA  TRP    37      40.823  45.218  11.522  1.00 25.00           C
ATOM     38  CA  GLU    38      44.116  43.335  12.046  1.00 25.00           C
ATOM     39  CA  GLU    39      44.501  44.923  15.510  1.00 25.00           C
ATOM     40  CA  SER    40      40.919  43.906  16.402  1.00 25.00           C
ATOM     41  CA  LEU    41      41.622  40.322  15.246  1.00 25.00           C
ATOM     42  CA  GLU    42      44.806  40.236  17.375  1.00 25.00           C
ATOM     43  CA  SER    43      42.841  41.500  20.409  1.00 25.00           C
ATOM     44  CA  TYR    44      40.185  38.799  19.846  1.00 25.00           C
ATOM     45  CA  GLY    45      42.842  36.107  19.763  1.00 25.00           C
ATOM     46  CA  LEU    46      43.951  34.674  16.413  1.00 25.00           C
ATOM     47  CA  ASN    47      46.837  32.943  14.586  1.00 25.00           C
ATOM     48  CA  PRO    48      48.409  36.396  14.780  1.00 25.00           C
ATOM     49  CA  ALA    49      51.708  36.033  16.690  1.00 25.00           C
ATOM     50  CA  ASP    50      50.013  33.716  19.225  1.00 25.00           C
ATOM     51  CA  ILE    51      46.973  32.596  21.289  1.00 25.00           C
ATOM     52  CA  PHE    52      44.112  30.661  19.662  1.00 25.00           C
ATOM     53  CA  PRO    53      45.134  27.318  21.156  1.00 25.00           C
ATOM     54  CA  GLY    54      48.462  28.060  19.577  1.00 25.00           C
ATOM     55  CA  SER    55      46.782  27.878  16.210  1.00 25.00           C
ATOM     56  CA  ARG    56      48.000  26.335  12.951  1.00 25.00           C
ATOM     57  CA  LYS    57      46.880  23.007  14.419  1.00 25.00           C
ATOM     58  CA  SER    58      44.418  22.617  17.229  1.00 25.00           C
ATOM     59  CA  GLU    59      42.063  25.018  15.363  1.00 25.00           C
ATOM     60  CA  VAL    60      41.265  22.369  12.712  1.00 25.00           C
ATOM     61  CA  THR    61      42.435  24.730   9.910  1.00 25.00           C
ATOM     62  CA  PRO    62      42.635  28.393   9.013  1.00 25.00           C
ATOM     63  CA  GLU    63      45.330  30.288   7.002  1.00 25.00           C
ATOM     64  CA  VAL    64      42.966  33.233   7.667  1.00 25.00           C
ATOM     65  CA  ALA    65      44.054  36.706   6.776  1.00 25.00           C
ATOM     66  CA  LEU    66      43.068  40.344   6.002  1.00 25.00           C
ATOM     67  CA  PRO    67      41.118  40.654   2.754  1.00 25.00           C
ATOM     68  CA  ILE    68      39.097  43.816   3.382  1.00 25.00           C
ATOM     69  CA  ILE    69      37.450  44.131   0.032  1.00 25.00           C
ATOM     70  CA  HIS    70      34.059  45.450   1.075  1.00 25.00           C
ATOM     71  CA  CYS    71      35.407  48.944   1.878  1.00 25.00           C
ATOM     72  CA  GLN    72      32.353  51.000   2.904  1.00 25.00           C
ATOM     73  CA  ALA    73      33.379  54.591   3.886  1.00 25.00           C
ATOM     74  CA  ASP    74      33.198  57.907   5.757  1.00 25.00           C
ATOM     75  CA  PHE    75      36.214  60.229   5.721  1.00 25.00           C
ATOM     76  CA  ARG    76      34.184  62.902   7.466  1.00 25.00           C
ATOM     77  CA  ARG    77      36.964  65.394   6.665  1.00 25.00           C
ATOM     78  CA  PRO    78      40.540  66.458   7.328  1.00 25.00           C
ATOM     79  CA  ILE    79      43.261  64.072   8.552  1.00 25.00           C
ATOM     80  CA  HIS    80      46.145  66.376   9.653  1.00 25.00           C
ATOM     81  CA  THR    81      49.890  66.005  10.408  1.00 25.00           C
ATOM     82  CA  GLY    82      50.681  63.930  13.509  1.00 25.00           C
ATOM     83  CA  ASP    83      46.899  63.287  13.739  1.00 25.00           C
ATOM     84  CA  ALA    84      46.865  59.913  15.495  1.00 25.00           C
ATOM     85  CA  LEU    85      43.592  58.102  14.763  1.00 25.00           C
ATOM     86  CA  ALA    86      42.572  56.428  17.988  1.00 25.00           C
ATOM     87  CA  MET    87      40.818  53.918  15.800  1.00 25.00           C
ATOM     88  CA  GLU    88      38.078  52.883  18.205  1.00 25.00           C
ATOM     89  CA  LEU    89      38.319  49.384  16.820  1.00 25.00           C
ATOM     90  CA  ARG    90      35.339  46.975  17.114  1.00 25.00           C
ATOM     91  CA  PRO    91      32.944  43.996  16.762  1.00 25.00           C
ATOM     92  CA  GLU    92      30.137  45.283  14.539  1.00 25.00           C
ATOM     93  CA  ARG    93      27.481  43.259  12.660  1.00 25.00           C
ATOM     94  CA  LEU    94      28.148  39.818  11.165  1.00 25.00           C
ATOM     95  CA  ASN    95      26.427  37.678   8.573  1.00 25.00           C
ATOM     96  CA  PRO    96      27.110  35.621   5.387  1.00 25.00           C
ATOM     97  CA  ASN    97      30.688  35.282   6.614  1.00 25.00           C
ATOM     98  CA  SER    98      32.762  37.776   8.608  1.00 25.00           C
ATOM     99  CA  PHE    99      34.493  40.589  10.596  1.00 25.00           C
ATOM    100  CA  GLN   100      35.654  43.785  12.316  1.00 25.00           C
ATOM    101  CA  VAL   101      34.059  47.160  11.685  1.00 25.00           C
ATOM    102  CA  HIS   102      37.005  49.529  11.954  1.00 25.00           C
ATOM    103  CA  PHE   103      35.635  52.684  13.549  1.00 25.00           C
ATOM    104  CA  GLU   104      35.185  56.188  14.900  1.00 25.00           C
ATOM    105  CA  PHE   105      38.227  58.375  15.609  1.00 25.00           C
ATOM    106  CA  ARG   106      40.041  61.482  16.756  1.00 25.00           C
ATOM    107  CA  CYS   107      40.614  64.854  18.527  1.00 25.00           C
ATOM    108  CA  GLU   108      40.435  68.000  20.635  1.00 25.00           C
ATOM    109  CA  GLU   109      36.938  69.134  19.518  1.00 25.00           C
ATOM    110  CA  GLN   110      35.524  65.938  17.913  1.00 25.00           C
ATOM    111  CA  ILE   111      35.470  64.108  14.616  1.00 25.00           C
ATOM    112  CA  ALA   112      36.951  61.968  11.805  1.00 25.00           C
ATOM    113  CA  ALA   113      35.418  58.782  10.495  1.00 25.00           C
ATOM    114  CA  HIS   114      37.401  56.224   8.530  1.00 25.00           C
ATOM    115  CA  ALA   115      35.302  53.039   8.329  1.00 25.00           C
ATOM    116  CA  LEU   116      32.703  50.256   7.865  1.00 25.00           C
ATOM    117  CA  ILE   117      35.811  48.252   6.872  1.00 25.00           C
ATOM    118  CA  ARG   118      36.023  44.472   7.275  1.00 25.00           C
ATOM    119  CA  HIS   119      38.739  41.990   8.306  1.00 25.00           C
ATOM    120  CA  LEU   120      36.981  39.510   5.925  1.00 25.00           C
ATOM    121  CA  ALA   121      38.951  36.756   7.695  1.00 25.00           C
ATOM    122  CA  ILE   122      39.251  35.267   4.187  1.00 25.00           C
ATOM    123  CA  ASN   123      42.565  34.181   2.669  1.00 25.00           C
ATOM    124  CA  ALA   124      43.934  31.344   0.536  1.00 25.00           C
ATOM    125  CA  GLN   125      45.702  31.016  -2.782  1.00 25.00           C
ATOM    126  CA  THR   126      43.086  28.735  -4.227  1.00 25.00           C
ATOM    127  CA  ARG   127      40.017  28.373  -1.928  1.00 25.00           C
ATOM    128  CA  HIS   128      37.427  27.032   0.449  1.00 25.00           C
ATOM    129  CA  ARG   129      34.086  28.519   1.476  1.00 25.00           C
ATOM    130  CA  CYS   130      33.306  29.454   5.096  1.00 25.00           C
ATOM    131  CA  ALA   131      31.091  28.125   7.795  1.00 25.00           C
ATOM    132  CA  LEU   132      33.353  30.087  10.102  1.00 25.00           C
ATOM    133  CA  PRO   133      35.870  30.598  12.878  1.00 25.00           C
ATOM    134  CA  GLU   134      33.097  29.356  15.219  1.00 25.00           C
ATOM    135  CA  GLY   135      31.689  32.812  14.544  1.00 25.00           C
ATOM    136  CA  ILE   136      34.047  35.745  13.990  1.00 25.00           C
ATOM    137  CA  ASP   137      36.407  35.830  17.006  1.00 25.00           C
ATOM    138  CA  ARG   138      34.773  39.073  18.223  1.00 25.00           C
ATOM    139  CA  TRP   139      31.304  37.492  17.858  1.00 25.00           C
ATOM    140  CA  LEU   140      32.466  34.428  19.842  1.00 25.00           C
ATOM    141  CA  GLU   141      33.855  36.704  22.592  1.00 25.00           C
ATOM    142  CA  ALA   142      30.534  38.607  22.727  1.00 25.00           C
ATOM    143  CA  SER   143      28.621  35.301  23.004  1.00 25.00           C
ATOM    144  CA  GLY   144      27.043  32.800  25.309  1.00 25.00           C
ATOM    145  CA  VAL   145      24.210  31.948  27.623  1.00 25.00           C
ATOM    146  CA  GLY   146      25.915  33.709  30.529  1.00 25.00           C
ATOM    147  CA  LYS   147      28.538  32.535  33.016  1.00 25.00           C
ATOM    148  CA  ILE   148      30.062  35.576  34.742  1.00 25.00           C
ATOM    149  CA  GLY   149      27.312  37.998  35.529  1.00 25.00           C
ATOM    150  CA  SER   150      25.191  40.974  36.551  1.00 25.00           C
ATOM    151  CA  ILE   151      25.333  44.243  34.609  1.00 25.00           C
TER
END
