
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  150 (  150),  selected  147 , name T0364TS168_2-D1
# Molecule2: number of CA atoms  147 ( 1178),  selected  147 , name T0364_D1.pdb
# PARAMETERS: T0364TS168_2-D1.T0364_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   138         1 - 141         4.97     9.37
  LCS_AVERAGE:     89.83

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    31        12 - 42          1.97    11.27
  LCS_AVERAGE:     12.01

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        22 - 42          0.94    10.86
  LCS_AVERAGE:      5.97

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3    5  138     5   15   23   31   43   72   81   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     P       2     P       2      4    6  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A       3     A       3      4    6  138     3    9   21   37   51   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L       4     L       4      4    7  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     I       5     I       5      4    7  138     3    8   21   36   48   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T       6     T       6      5    8  138     3    7   13   35   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Y       7     Y       7      6    8  138     3   13   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     R       8     R       8      6    8  138     3    7   17   28   42   62   84   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T       9     T       9      6    8  138     3    5   12   17   37   55   74   92  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T      10     T      10      6    8  138     3    5    6    9   29   45   60   76   89  104  113  117  118  121  124  126  128  130  131  132 
LCS_GDT     V      11     V      11      6    8  138     3   13   23   36   49   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q      12     Q      12      6   31  138     3   10   19   38   53   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E      13     E      13      6   31  138     4   11   26   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      14     D      14      6   31  138     3   15   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     W      15     W      15      6   31  138     3    5   21   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V      16     V      16      6   31  138     4    7   21   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      17     D      17      6   31  138     4    6   13   20   30   58   79   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Y      18     Y      18      5   31  138     4   10   17   27   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     N      19     N      19      5   31  138     4   10   22   31   49   71   84   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     G      20     G      20      5   31  138     3    4    6   18   19   39   50   57   78   96  108  113  118  121  124  126  128  130  131  132 
LCS_GDT     H      21     H      21      7   31  138     3    7   18   31   43   63   80   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      22     L      22     21   31  138     3    7   21   31   54   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     R      23     R      23     21   31  138     5   13   23   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      24     D      24     21   31  138     5   20   23   36   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A      25     A      25     21   31  138    14   20   23   31   54   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     F      26     F      26     21   31  138    13   20   23   31   53   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Y      27     Y      27     21   31  138    15   20   23   31   51   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      28     L      28     21   31  138    15   20   23   31   53   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      29     L      29     21   31  138    15   20   23   32   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     I      30     I      30     21   31  138    15   20   23   31   54   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     F      31     F      31     21   31  138    15   20   23   31   51   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     S      32     S      32     21   31  138    15   20   23   32   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Y      33     Y      33     21   31  138    15   20   23   32   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A      34     A      34     21   31  138    15   20   23   31   53   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T      35     T      35     21   31  138    15   20   23   31   46   71   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      36     D      36     21   31  138    15   20   23   31   50   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A      37     A      37     21   31  138    15   20   23   32   54   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      38     L      38     21   31  138    15   20   23   31   44   72   85   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     M      39     M      39     21   31  138    15   20   23   31   37   60   81   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      40     D      40     21   31  138    15   20   23   31   46   71   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     R      41     R      41     21   31  138    15   20   23   31   50   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     I      42     I      42     21   31  138    15   20   23   31   37   46   79   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     G      43     G      43     20   27  138     3    4    6   18   26   34   46   65   85   97  104  111  118  122  124  126  128  130  131  132 
LCS_GDT     L      44     L      44      5   27  138     3   20   23   31   37   48   79   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      45     D      45      5   25  138     3    4    5    7    8   14   23   26   41   57   81   95  105  114  120  126  128  130  131  132 
LCS_GDT     A      46     A      46      5    8  138     3    5    7    8   11   18   19   24   27   34   39   64   67   89  104  110  116  125  128  131 
LCS_GDT     D      47     D      47      3    9  138     3    3    5    8   12   18   19   24   25   30   32   34   48   50   68   95  107  115  122  128 
LCS_GDT     S      48     S      48      5    9  138     4    5   10   19   21   22   23   27   32   34   39   64   68   86   98  108  115  121  126  130 
LCS_GDT     R      49     R      49      5    9  138     4    5    5    5   21   22   25   31   34   48   66   84   94  105  111  122  126  129  131  132 
LCS_GDT     G      50     G      50      5    9  138     4    5    5    5    7   24   39   54   76   94  106  115  118  122  124  126  128  130  131  132 
LCS_GDT     Q      51     Q      51      5    9  138     4    5    6    6    8   18   24   29   39   55   78   90  107  115  122  126  127  130  131  132 
LCS_GDT     S      52     S      52      5    9  138     3    5    6    6    7   10   22   30   32   37   45   50   55   71   85   99  119  128  129  131 
LCS_GDT     G      53     G      53      5    9  138     3    4    6    6    7   10   22   30   32   45   49   70  103  120  122  126  128  130  131  132 
LCS_GDT     N      54     N      54      5    9  138     3    4    6    9   17   26   47   61   84  107  113  117  118  122  124  126  128  130  131  132 
LCS_GDT     S      55     S      55      5   19  138     5   15   26   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      56     L      56      5   19  138     5   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     F      57     F      57      5   19  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T      58     T      58      5   19  138     6   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      59     L      59      5   19  138     4    7   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E      60     E      60      4   19  138     3    5   11   35   48   71   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A      61     A      61      4   19  138     3   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H      62     H      62      4   19  138     3   13   18   29   44   66   85   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     I      63     I      63      5   19  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     N      64     N      64      5   19  138     4   15   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Y      65     Y      65      5   19  138     4   14   25   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      66     L      66      7   19  138     3   13   24   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H      67     H      67      7   19  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E      68     E      68      7   19  138     3    6   13   24   40   57   77   92  103  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V      69     V      69      7   19  138     4   11   21   33   51   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     K      70     K      70      7   19  138     3    6   10   17   26   45   61   88   98  107  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      71     L      71      7   19  138     3    6    8   13   18   29   40   54   78   97  108  112  116  122  123  126  128  130  131  132 
LCS_GDT     G      72     G      72      7   19  138     3   11   21   30   46   66   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T      73     T      73      4   19  138     3    4   13   28   41   54   72   92  103  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E      74     E      74      4   12  138     3    4   10   18   36   68   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V      75     V      75      6   12  138     3    8   21   32   46   65   85   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     W      76     W      76      7   12  138     3   10   21   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V      77     V      77      7   12  138     4   14   25   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q      78     Q      78      7   12  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T      79     T      79      7   12  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q      80     Q      80      7   12  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     I      81     I      81      7   12  138     3   13   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      82     L      82      7   12  138     3    6   13   28   42   66   85   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     G      83     G      83      4   12  138     8   16   26   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     F      84     F      84      4   12  138     4   13   23   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D      85     D      85      4   12  138     3    5   14   32   48   71   84   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     R      86     R      86      6   11  138     3    4   12   18   26   37   59   79   94  101  108  114  118  122  124  126  128  130  131  132 
LCS_GDT     K      87     K      87      6   11  138     3    4   11   23   29   46   73   89   99  109  113  117  118  122  124  126  128  130  131  132 
LCS_GDT     R      88     R      88      6   17  138     3   10   23   33   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      89     L      89      6   17  138     3    5   22   35   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H      90     H      90      6   17  138     3    5   22   30   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V      91     V      91      6   19  138     3    4   21   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Y      92     Y      92      5   19  138     4    6   22   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H      93     H      93      6   19  138     4   12   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     S      94     S      94      6   19  138     4   11   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L      95     L      95      6   19  138     4   11   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H      96     H      96      6   19  138     4   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     R      97     R      97      6   19  138     3    9   24   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A      98     A      98      6   19  138     3   10   18   28   50   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     G      99     G      99      6   19  138     3   10   25   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     F     100     F     100      6   19  138     3    3   13   27   50   67   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D     101     D     101      9   19  138     8   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E     102     E     102      9   19  138     5   13   24   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V     103     V     103      9   19  138     4    7   21   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L     104     L     104      9   19  138     4   13   24   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A     105     A     105      9   19  138     4   13   18   31   47   67   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     A     106     A     106      9   19  138     4   13   18   27   47   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     S     107     S     107      9   19  138     4   13   18   24   44   66   85   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E     108     E     108      9   19  138     4   13   18   24   43   66   82   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q     109     Q     109      9   19  138     3    7   16   22   36   44   62   80   98  106  114  115  118  122  124  126  128  130  131  132 
LCS_GDT     M     110     M     110      4   16  138     3    4    8   18   19   23   41   58   70   93  105  112  116  119  124  126  128  130  131  132 
LCS_GDT     L     111     L     111      5    6  138     3    5   15   32   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L     112     L     112      5    6  138     4    7   21   35   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H     113     H     113      5    6  138     4    7   16   24   41   60   81   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V     114     V     114      5    6  138     4   10   22   35   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     D     115     D     115      5    6  138     4   11   21   34   51   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L     116     L     116      3    6  138     3    4    7   12   30   46   68   87   99  109  113  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q     120     Q     120      4    8  138     2    3    4    5    9   18   20   22   23   27   27   33   38   56   73  121  125  128  130  131 
LCS_GDT     S     121     S     121      4    9  138     3    3    6   10   15   18   20   22   24   27   29   49   98  117  119  124  127  129  131  132 
LCS_GDT     A     122     A     122      5   11  138     3    4    6    8   10   16   22   27   49   78   98  112  117  121  124  126  128  130  131  132 
LCS_GDT     P     123     P     123      5   11  138     3    4    6    8   12   26   48   61   89  103  113  117  118  122  124  126  128  130  131  132 
LCS_GDT     F     124     F     124      5   17  138     3    4   17   32   48   59   84   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     G     125     G     125      5   17  138     3   14   26   37   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H     126     H     126     15   17  138    13   15   17   30   47   66   81   93  101  110  114  115  118  121  124  126  128  130  131  132 
LCS_GDT     T     127     T     127     15   17  138    13   15   17   32   50   69   85   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     T     128     T     128     15   17  138    13   15   17   38   54   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V     129     V     129     15   17  138    13   15   20   38   54   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     C     130     C     130     15   17  138    13   15   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     R     131     R     131     15   17  138    13   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L     132     L     132     15   17  138    13   16   26   38   55   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     N     133     N     133     15   17  138    13   15   20   37   51   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     H     134     H     134     15   17  138    13   15   26   37   53   72   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     L     135     L     135     15   17  138    13   15   21   33   48   70   86   94  104  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     V     136     V     136     15   17  138    13   15   17   23   37   54   72   93  103  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E     137     E     137     15   17  138    13   15   17   19   37   53   72   92  103  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q     138     Q     138     15   17  138    13   15   17   22   37   54   64   85  103  110  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     Q     139     Q     139     15   17  138    10   15   17   19   24   41   61   77   92  107  114  117  118  122  124  126  128  130  131  132 
LCS_GDT     E     140     E     140     15   17  138     6   15   17   19   24   31   45   65   92  101  108  115  118  122  124  126  128  130  131  132 
LCS_GDT     G     141     G     141      3   17  138     3    4    5    7   14   20   23   28   32   35   45   54   72   95  113  121  126  128  131  132 
LCS_GDT     A     142     A     142      3    5   91     3    3    5    6    9   11   12   13   17   21   27   29   37   55   66   81   94  108  117  125 
LCS_GDT     Q     143     Q     143      3    7   88     3    3    5    6    9   11   12   13   17   19   23   24   28   33   42   46   71   78   85   96 
LCS_GDT     A     144     A     144      4    7   27     3    4    5    6    6    7   11   13   17   19   23   23   25   25   28   31   37   49   60   65 
LCS_GDT     P     145     P     145      4    7   27     3    4    5    6    9   11   12   13   17   19   23   23   25   25   27   27   27   28   30   31 
LCS_GDT     Q     146     Q     146      4    7   27     3    4    5    6    9   11   12   13   17   19   23   23   25   25   27   27   27   28   30   31 
LCS_GDT     Y     147     Y     147      4    7   27     3    4    5    6    8   10   12   13   17   19   23   23   25   25   27   27   27   28   30   31 
LCS_GDT     M     148     M     148      4    7   27     3    4    5    6    9   11   12   13   17   19   23   23   25   25   27   27   27   28   30   31 
LCS_GDT     G     149     G     149      4    7   27     3    4    4    6    7   11   11   13   17   19   23   23   25   25   27   27   27   28   30   31 
LCS_GDT     R     150     R     150      0    7   27     0    0    3    4    5    7    8    8   13   14   17   20   22   22   27   27   27   28   30   31 
LCS_AVERAGE  LCS_A:  35.94  (   5.97   12.01   89.83 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     20     26     38     55     72     86     94    104    110    114    117    118    122    124    126    128    130    131    132 
GDT PERCENT_CA  10.20  13.61  17.69  25.85  37.41  48.98  58.50  63.95  70.75  74.83  77.55  79.59  80.27  82.99  84.35  85.71  87.07  88.44  89.12  89.80
GDT RMS_LOCAL    0.29   0.47   1.02   1.48   1.88   2.14   2.38   2.53   2.76   2.93   3.07   3.28   3.30   3.59   3.63   3.75   3.89   4.06   4.17   4.26
GDT RMS_ALL_CA  11.70  11.42   9.38   9.56   9.45   9.47   9.50   9.54   9.55   9.51   9.51   9.41   9.43   9.43   9.42   9.41   9.40   9.40   9.39   9.38

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          4.582
LGA    P       2      P       2          1.278
LGA    A       3      A       3          2.803
LGA    L       4      L       4          0.872
LGA    I       5      I       5          3.008
LGA    T       6      T       6          2.639
LGA    Y       7      Y       7          1.563
LGA    R       8      R       8          4.185
LGA    T       9      T       9          5.024
LGA    T      10      T      10          7.259
LGA    V      11      V      11          3.066
LGA    Q      12      Q      12          2.455
LGA    E      13      E      13          2.440
LGA    D      14      D      14          1.246
LGA    W      15      W      15          2.042
LGA    V      16      V      16          1.881
LGA    D      17      D      17          3.786
LGA    Y      18      Y      18          2.477
LGA    N      19      N      19          4.550
LGA    G      20      G      20          7.380
LGA    H      21      H      21          4.583
LGA    L      22      L      22          2.917
LGA    R      23      R      23          1.769
LGA    D      24      D      24          2.148
LGA    A      25      A      25          2.453
LGA    F      26      F      26          2.815
LGA    Y      27      Y      27          2.951
LGA    L      28      L      28          2.752
LGA    L      29      L      29          2.299
LGA    I      30      I      30          2.653
LGA    F      31      F      31          2.995
LGA    S      32      S      32          2.611
LGA    Y      33      Y      33          2.427
LGA    A      34      A      34          2.921
LGA    T      35      T      35          3.527
LGA    D      36      D      36          3.102
LGA    A      37      A      37          2.718
LGA    L      38      L      38          3.690
LGA    M      39      M      39          4.291
LGA    D      40      D      40          3.311
LGA    R      41      R      41          3.211
LGA    I      42      I      42          4.790
LGA    G      43      G      43          8.533
LGA    L      44      L      44          4.725
LGA    D      45      D      45          9.883
LGA    A      46      A      46         14.037
LGA    D      47      D      47         16.823
LGA    S      48      S      48         16.292
LGA    R      49      R      49         13.299
LGA    G      50      G      50          9.561
LGA    Q      51      Q      51         12.333
LGA    S      52      S      52         13.423
LGA    G      53      G      53          9.930
LGA    N      54      N      54          7.907
LGA    S      55      S      55          1.372
LGA    L      56      L      56          1.174
LGA    F      57      F      57          1.517
LGA    T      58      T      58          1.537
LGA    L      59      L      59          1.436
LGA    E      60      E      60          3.403
LGA    A      61      A      61          1.283
LGA    H      62      H      62          3.601
LGA    I      63      I      63          1.394
LGA    N      64      N      64          2.035
LGA    Y      65      Y      65          2.138
LGA    L      66      L      66          2.132
LGA    H      67      H      67          1.285
LGA    E      68      E      68          4.958
LGA    V      69      V      69          2.953
LGA    K      70      K      70          6.171
LGA    L      71      L      71          8.258
LGA    G      72      G      72          3.719
LGA    T      73      T      73          4.944
LGA    E      74      E      74          3.430
LGA    V      75      V      75          3.523
LGA    W      76      W      76          1.838
LGA    V      77      V      77          1.779
LGA    Q      78      Q      78          1.525
LGA    T      79      T      79          1.236
LGA    Q      80      Q      80          0.991
LGA    I      81      I      81          1.870
LGA    L      82      L      82          3.739
LGA    G      83      G      83          1.644
LGA    F      84      F      84          2.691
LGA    D      85      D      85          4.979
LGA    R      86      R      86          9.321
LGA    K      87      K      87          7.333
LGA    R      88      R      88          3.126
LGA    L      89      L      89          2.971
LGA    H      90      H      90          2.800
LGA    V      91      V      91          1.657
LGA    Y      92      Y      92          1.336
LGA    H      93      H      93          1.631
LGA    S      94      S      94          1.705
LGA    L      95      L      95          1.956
LGA    H      96      H      96          0.763
LGA    R      97      R      97          1.725
LGA    A      98      A      98          3.559
LGA    G      99      G      99          1.915
LGA    F     100      F     100          3.542
LGA    D     101      D     101          1.039
LGA    E     102      E     102          2.295
LGA    V     103      V     103          1.730
LGA    L     104      L     104          2.315
LGA    A     105      A     105          3.326
LGA    A     106      A     106          2.964
LGA    S     107      S     107          3.489
LGA    E     108      E     108          3.908
LGA    Q     109      Q     109          5.270
LGA    M     110      M     110          6.862
LGA    L     111      L     111          2.629
LGA    L     112      L     112          2.578
LGA    H     113      H     113          4.640
LGA    V     114      V     114          3.186
LGA    D     115      D     115          3.649
LGA    L     116      L     116          8.041
LGA    Q     120      Q     120         14.334
LGA    S     121      S     121         12.267
LGA    A     122      A     122         10.461
LGA    P     123      P     123          8.133
LGA    F     124      F     124          4.437
LGA    G     125      G     125          2.629
LGA    H     126      H     126          4.642
LGA    T     127      T     127          3.534
LGA    T     128      T     128          2.446
LGA    V     129      V     129          2.232
LGA    C     130      C     130          1.886
LGA    R     131      R     131          0.632
LGA    L     132      L     132          1.371
LGA    N     133      N     133          2.759
LGA    H     134      H     134          2.429
LGA    L     135      L     135          3.360
LGA    V     136      V     136          4.516
LGA    E     137      E     137          4.879
LGA    Q     138      Q     138          5.112
LGA    Q     139      Q     139          5.836
LGA    E     140      E     140          6.926
LGA    G     141      G     141         11.869
LGA    A     142      A     142         16.517
LGA    Q     143      Q     143         20.981
LGA    A     144      A     144         26.018
LGA    P     145      P     145         28.911
LGA    Q     146      Q     146         34.236
LGA    Y     147      Y     147         37.111
LGA    M     148      M     148         38.139
LGA    G     149      G     149         39.698
LGA    R     150      R     150         41.763

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  150  147    4.0     94    2.53    47.279    42.244     3.576

LGA_LOCAL      RMSD =  2.528  Number of atoms =   94  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  9.568  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  8.896  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.858404 * X  +  -0.394248 * Y  +  -0.328194 * Z  +  44.790257
  Y_new =  -0.142484 * X  +  -0.431365 * Y  +   0.890855 * Z  +  11.643620
  Z_new =  -0.492789 * X  +   0.811476 * Y  +   0.314112 * Z  +   6.942658 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.201471   -1.940121  [ DEG:    68.8392   -111.1608 ]
  Theta =   0.515292    2.626301  [ DEG:    29.5241    150.4759 ]
  Phi   =  -2.977105    0.164487  [ DEG:  -170.5756      9.4244 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0364TS168_2-D1                               
REMARK     2: T0364_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0364TS168_2-D1.T0364_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  150  147   4.0   94   2.53  42.244     8.90
REMARK  ---------------------------------------------------------- 
MOLECULE T0364TS168_2-D1
PFRMAT TS
TARGET T0364
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      28.017  10.445  10.555  1.00 25.00           C
ATOM      2  CA  PRO     2      29.508  13.281   8.492  1.00 25.00           C
ATOM      3  CA  ALA     3      33.121  13.830   9.477  1.00 25.00           C
ATOM      4  CA  LEU     4      36.226  13.497   7.260  1.00 25.00           C
ATOM      5  CA  ILE     5      38.489  13.193   4.195  1.00 25.00           C
ATOM      6  CA  THR     6      38.339  10.270   1.677  1.00 25.00           C
ATOM      7  CA  TYR     7      40.832   9.945  -1.190  1.00 25.00           C
ATOM      8  CA  ARG     8      42.984   7.466  -3.115  1.00 25.00           C
ATOM      9  CA  THR     9      45.105   4.336  -2.999  1.00 25.00           C
ATOM     10  CA  THR    10      46.617   2.433  -5.944  1.00 25.00           C
ATOM     11  CA  VAL    11      43.975  -0.242  -6.420  1.00 25.00           C
ATOM     12  CA  GLN    12      42.943  -3.919  -6.498  1.00 25.00           C
ATOM     13  CA  GLU    13      44.465  -4.385 -10.005  1.00 25.00           C
ATOM     14  CA  ASP    14      48.227  -4.534  -9.306  1.00 25.00           C
ATOM     15  CA  TRP    15      47.564  -6.302  -5.975  1.00 25.00           C
ATOM     16  CA  VAL    16      47.319 -10.062  -5.239  1.00 25.00           C
ATOM     17  CA  ASP    17      49.247 -11.786  -8.043  1.00 25.00           C
ATOM     18  CA  TYR    18      48.295 -15.467  -8.597  1.00 25.00           C
ATOM     19  CA  ASN    19      49.996 -16.200  -5.274  1.00 25.00           C
ATOM     20  CA  GLY    20      49.140 -16.275  -1.560  1.00 25.00           C
ATOM     21  CA  HIS    21      48.204 -13.033   0.132  1.00 25.00           C
ATOM     22  CA  LEU    22      46.868  -9.515   0.185  1.00 25.00           C
ATOM     23  CA  ARG    23      50.475  -8.556  -0.481  1.00 25.00           C
ATOM     24  CA  ASP    24      51.698  -7.210   2.823  1.00 25.00           C
ATOM     25  CA  ALA    25      54.127  -4.546   1.529  1.00 25.00           C
ATOM     26  CA  PHE    26      51.602  -3.514  -1.159  1.00 25.00           C
ATOM     27  CA  TYR    27      48.850  -3.254   1.492  1.00 25.00           C
ATOM     28  CA  LEU    28      51.129  -1.094   3.684  1.00 25.00           C
ATOM     29  CA  LEU    29      51.888   1.179   0.696  1.00 25.00           C
ATOM     30  CA  ILE    30      48.143   1.513  -0.034  1.00 25.00           C
ATOM     31  CA  PHE    31      47.484   2.406   3.632  1.00 25.00           C
ATOM     32  CA  SER    32      50.257   5.045   3.513  1.00 25.00           C
ATOM     33  CA  TYR    33      48.753   6.517   0.313  1.00 25.00           C
ATOM     34  CA  ALA    34      45.301   6.650   1.968  1.00 25.00           C
ATOM     35  CA  THR    35      46.803   8.414   5.017  1.00 25.00           C
ATOM     36  CA  ASP    36      48.532  10.951   2.727  1.00 25.00           C
ATOM     37  CA  ALA    37      45.229  11.588   0.898  1.00 25.00           C
ATOM     38  CA  LEU    38      43.447  12.113   4.247  1.00 25.00           C
ATOM     39  CA  MET    39      46.167  14.576   5.338  1.00 25.00           C
ATOM     40  CA  ASP    40      45.804  16.479   2.034  1.00 25.00           C
ATOM     41  CA  ARG    41      42.008  16.636   2.515  1.00 25.00           C
ATOM     42  CA  ILE    42      42.489  17.961   6.076  1.00 25.00           C
ATOM     43  CA  GLY    43      45.296  18.677   8.603  1.00 25.00           C
ATOM     44  CA  LEU    44      47.917  19.275   5.864  1.00 25.00           C
ATOM     45  CA  ASP    45      50.309  16.705   7.331  1.00 25.00           C
ATOM     46  CA  ALA    46      50.507  17.964  10.944  1.00 25.00           C
ATOM     47  CA  ASP    47      50.373  21.571  12.226  1.00 25.00           C
ATOM     48  CA  SER    48      54.196  21.670  12.422  1.00 25.00           C
ATOM     49  CA  ARG    49      54.440  20.339   8.839  1.00 25.00           C
ATOM     50  CA  GLY    50      51.969  23.014   7.652  1.00 25.00           C
ATOM     51  CA  GLN    51      54.020  25.726   9.413  1.00 25.00           C
ATOM     52  CA  SER    52      55.250  27.369   6.203  1.00 25.00           C
ATOM     53  CA  GLY    53      56.072  24.633   3.734  1.00 25.00           C
ATOM     54  CA  ASN    54      57.895  21.635   5.329  1.00 25.00           C
ATOM     55  CA  SER    55      56.052  18.721   3.736  1.00 25.00           C
ATOM     56  CA  LEU    56      55.358  15.889   6.185  1.00 25.00           C
ATOM     57  CA  PHE    57      58.757  14.204   6.866  1.00 25.00           C
ATOM     58  CA  THR    58      56.535  11.268   7.847  1.00 25.00           C
ATOM     59  CA  LEU    59      57.487   9.417  11.010  1.00 25.00           C
ATOM     60  CA  GLU    60      54.942   8.640  13.709  1.00 25.00           C
ATOM     61  CA  ALA    61      54.324   4.984  12.917  1.00 25.00           C
ATOM     62  CA  HIS    62      53.370   2.331  10.397  1.00 25.00           C
ATOM     63  CA  ILE    63      50.129   0.423  11.032  1.00 25.00           C
ATOM     64  CA  ASN    64      47.248  -1.374  12.684  1.00 25.00           C
ATOM     65  CA  TYR    65      46.599  -3.705   9.687  1.00 25.00           C
ATOM     66  CA  LEU    66      43.500  -5.875   9.458  1.00 25.00           C
ATOM     67  CA  HIS    67      40.405  -7.137   7.562  1.00 25.00           C
ATOM     68  CA  GLU    68      38.231  -6.393   4.480  1.00 25.00           C
ATOM     69  CA  VAL    69      38.866  -5.302   0.926  1.00 25.00           C
ATOM     70  CA  LYS    70      35.467  -5.431  -0.838  1.00 25.00           C
ATOM     71  CA  LEU    71      33.572  -4.644  -4.002  1.00 25.00           C
ATOM     72  CA  GLY    72      36.223  -2.490  -5.634  1.00 25.00           C
ATOM     73  CA  THR    73      35.079   0.278  -3.263  1.00 25.00           C
ATOM     74  CA  GLU    74      37.662   0.687  -0.457  1.00 25.00           C
ATOM     75  CA  VAL    75      40.622   3.087  -0.830  1.00 25.00           C
ATOM     76  CA  TRP    76      39.643   4.921   2.361  1.00 25.00           C
ATOM     77  CA  VAL    77      41.320   6.956   5.124  1.00 25.00           C
ATOM     78  CA  GLN    78      38.977   9.213   7.205  1.00 25.00           C
ATOM     79  CA  THR    79      41.619  11.233   9.085  1.00 25.00           C
ATOM     80  CA  GLN    80      41.696  12.575  12.663  1.00 25.00           C
ATOM     81  CA  ILE    81      44.327  15.290  12.242  1.00 25.00           C
ATOM     82  CA  LEU    82      44.605  16.415  15.865  1.00 25.00           C
ATOM     83  CA  GLY    83      46.566  16.714  19.075  1.00 25.00           C
ATOM     84  CA  PHE    84      48.829  19.651  18.452  1.00 25.00           C
ATOM     85  CA  ASP    85      50.198  20.147  22.018  1.00 25.00           C
ATOM     86  CA  ARG    86      52.360  17.198  22.897  1.00 25.00           C
ATOM     87  CA  LYS    87      53.627  17.016  19.319  1.00 25.00           C
ATOM     88  CA  ARG    88      52.751  15.634  15.869  1.00 25.00           C
ATOM     89  CA  LEU    89      49.282  14.638  14.905  1.00 25.00           C
ATOM     90  CA  HIS    90      47.465  11.335  15.169  1.00 25.00           C
ATOM     91  CA  VAL    91      46.140  10.308  11.780  1.00 25.00           C
ATOM     92  CA  TYR    92      45.704   6.728  13.082  1.00 25.00           C
ATOM     93  CA  HIS    93      42.881   6.493  10.561  1.00 25.00           C
ATOM     94  CA  SER    94      40.222   3.787  10.297  1.00 25.00           C
ATOM     95  CA  LEU    95      39.068   2.476   6.979  1.00 25.00           C
ATOM     96  CA  HIS    96      36.222   1.126   4.933  1.00 25.00           C
ATOM     97  CA  ARG    97      34.780  -2.157   3.671  1.00 25.00           C
ATOM     98  CA  ALA    98      31.345  -3.786   3.722  1.00 25.00           C
ATOM     99  CA  GLY    99      27.944  -4.015   5.433  1.00 25.00           C
ATOM    100  CA  PHE   100      28.759  -4.231   9.084  1.00 25.00           C
ATOM    101  CA  ASP   101      31.421  -1.533   8.912  1.00 25.00           C
ATOM    102  CA  GLU   102      35.226  -1.974   9.215  1.00 25.00           C
ATOM    103  CA  VAL   103      39.035  -2.483   9.385  1.00 25.00           C
ATOM    104  CA  LEU   104      40.610  -2.214   5.935  1.00 25.00           C
ATOM    105  CA  ALA   105      44.180  -0.911   5.946  1.00 25.00           C
ATOM    106  CA  ALA   106      45.493   1.644   8.394  1.00 25.00           C
ATOM    107  CA  SER   107      48.178   4.322   8.236  1.00 25.00           C
ATOM    108  CA  GLU   108      50.078   6.725  10.490  1.00 25.00           C
ATOM    109  CA  GLN   109      51.502   8.096   7.257  1.00 25.00           C
ATOM    110  CA  MET   110      49.828  11.443   7.875  1.00 25.00           C
ATOM    111  CA  LEU   111      52.223  12.604  10.654  1.00 25.00           C
ATOM    112  CA  LEU   112      55.149  14.871  11.527  1.00 25.00           C
ATOM    113  CA  HIS   113      58.706  16.093  12.168  1.00 25.00           C
ATOM    114  CA  VAL   114      59.226  19.074   9.896  1.00 25.00           C
ATOM    115  CA  ASP   115      61.791  21.787   9.036  1.00 25.00           C
ATOM    116  CA  LEU   116      65.578  21.564   9.318  1.00 25.00           C
ATOM    117  CA  ALA   117      67.212  23.698  11.996  1.00 25.00           C
ATOM    118  CA  GLY   118      67.727  25.125  15.415  1.00 25.00           C
ATOM    119  CA  PRO   119      65.995  28.485  15.141  1.00 25.00           C
ATOM    120  CA  GLN   120      64.043  31.510  16.249  1.00 25.00           C
ATOM    121  CA  SER   121      60.589  30.213  17.406  1.00 25.00           C
ATOM    122  CA  ALA   122      56.852  29.738  17.593  1.00 25.00           C
ATOM    123  CA  PRO   123      53.332  30.510  16.562  1.00 25.00           C
ATOM    124  CA  PHE   124      52.228  28.452  13.502  1.00 25.00           C
ATOM    125  CA  GLY   125      50.334  30.199  10.685  1.00 25.00           C
ATOM    126  CA  HIS   126      49.102  29.502   7.109  1.00 25.00           C
ATOM    127  CA  THR   127      45.853  28.081   5.664  1.00 25.00           C
ATOM    128  CA  THR   128      46.731  24.614   7.033  1.00 25.00           C
ATOM    129  CA  VAL   129      47.434  26.125  10.480  1.00 25.00           C
ATOM    130  CA  CYS   130      44.072  27.955  10.392  1.00 25.00           C
ATOM    131  CA  ARG   131      42.295  24.695   9.452  1.00 25.00           C
ATOM    132  CA  LEU   132      44.035  22.884  12.344  1.00 25.00           C
ATOM    133  CA  ASN   133      42.966  25.660  14.757  1.00 25.00           C
ATOM    134  CA  HIS   134      39.357  25.393  13.505  1.00 25.00           C
ATOM    135  CA  LEU   135      39.438  21.597  14.005  1.00 25.00           C
ATOM    136  CA  VAL   136      40.779  22.069  17.560  1.00 25.00           C
ATOM    137  CA  GLU   137      37.991  24.589  18.303  1.00 25.00           C
ATOM    138  CA  GLN   138      35.378  22.128  16.966  1.00 25.00           C
ATOM    139  CA  GLN   139      36.833  19.350  19.165  1.00 25.00           C
ATOM    140  CA  GLU   140      34.891  20.957  21.957  1.00 25.00           C
ATOM    141  CA  GLY   141      32.331  23.567  21.089  1.00 25.00           C
ATOM    142  CA  ALA   142      29.376  25.588  19.688  1.00 25.00           C
ATOM    143  CA  GLN   143      25.667  25.730  18.817  1.00 25.00           C
ATOM    144  CA  ALA   144      24.368  29.300  18.617  1.00 25.00           C
ATOM    145  CA  PRO   145      26.066  30.257  15.367  1.00 25.00           C
ATOM    146  CA  GLN   146      23.246  30.552  12.823  1.00 25.00           C
ATOM    147  CA  TYR   147      22.388  29.580   9.292  1.00 25.00           C
ATOM    148  CA  MET   148      24.625  32.394   8.233  1.00 25.00           C
ATOM    149  CA  GLY   149      27.378  31.537   5.762  1.00 25.00           C
ATOM    150  CA  ARG   150      28.145  30.042   2.302  1.00 25.00           C
TER
END
