
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  150 (  150),  selected  147 , name T0364TS168_3-D1
# Molecule2: number of CA atoms  147 ( 1178),  selected  147 , name T0364_D1.pdb
# PARAMETERS: T0364TS168_3-D1.T0364_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   136         1 - 139         4.95    10.59
  LCS_AVERAGE:     87.65

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25        23 - 47          1.61    13.14
  LONGEST_CONTINUOUS_SEGMENT:    25        24 - 48          1.97    13.71
  LCS_AVERAGE:     10.28

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        23 - 43          0.99    12.07
  LCS_AVERAGE:      5.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      4   10  136     4   10   21   30   42   55   71   79   93  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     P       2     P       2      4   10  136     3   10   17   29   40   63   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A       3     A       3      4   10  136     3    7   17   29   43   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L       4     L       4      4   10  136     3    6   19   35   55   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     I       5     I       5      4   10  136     3    8   19   29   52   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T       6     T       6      5   10  136     4    9   18   29   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Y       7     Y       7      5   10  136     4   11   19   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R       8     R       8      5   10  136     4    7   20   37   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T       9     T       9      5   10  136     3    7   12   31   52   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T      10     T      10      5   10  136     3    5    5   13   20   46   72   81   92  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V      11     V      11      4   10  136     3    3    9   15   38   56   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q      12     Q      12      6    9  136     4   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     E      13     E      13      6    9  136     5   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      14     D      14      6    9  136     5   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     W      15     W      15      6    9  136     4    6   17   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V      16     V      16      6    9  136     3    5   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      17     D      17      6    9  136     3   17   26   38   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Y      18     Y      18      5    9  136     5   14   25   35   55   66   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     N      19     N      19      5    9  136     3   10   21   29   39   56   71   79   86   97  105  109  115  121  124  127  129  131  131  133 
LCS_GDT     G      20     G      20      4    9  136     3    5    5    6    9   17   23   29   42   66   74   83   91  100  104  111  116  126  130  132 
LCS_GDT     H      21     H      21      4   23  136     3    5   10   18   29   42   52   75   85   90   98  108  113  121  124  127  129  131  131  133 
LCS_GDT     L      22     L      22      4   24  136     3    5    9   22   37   61   71   83   93  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R      23     R      23     21   25  136     5   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      24     D      24     21   25  136     6   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A      25     A      25     21   25  136     9   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     F      26     F      26     21   25  136    11   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Y      27     Y      27     21   25  136    15   19   26   36   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      28     L      28     21   25  136    10   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      29     L      29     21   25  136    15   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     I      30     I      30     21   25  136    15   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     F      31     F      31     21   25  136    15   19   26   41   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     S      32     S      32     21   25  136    15   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Y      33     Y      33     21   25  136    15   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A      34     A      34     21   25  136    15   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T      35     T      35     21   25  136    15   19   26   35   52   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      36     D      36     21   25  136    15   19   26   38   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A      37     A      37     21   25  136    15   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      38     L      38     21   25  136    15   19   26   35   50   66   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     M      39     M      39     21   25  136    15   19   26   30   42   65   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      40     D      40     21   25  136    15   19   26   38   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R      41     R      41     21   25  136    15   19   26   40   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     I      42     I      42     21   25  136    15   19   26   30   42   60   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     G      43     G      43     21   25  136     3    5   10   21   23   40   65   79   90  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      44     L      44      9   25  136     3    6   12   21   23   27   35   56   78   90  103  111  117  121  124  127  129  131  131  133 
LCS_GDT     D      45     D      45      4   25  136     3    3    6   11   13   17   22   26   43   52   76   95  108  118  124  127  129  131  131  133 
LCS_GDT     A      46     A      46      4   25  136     3    5   12   19   23   26   35   46   75   97  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      47     D      47      3   25  136     3    3   19   21   23   28   35   55   78   92  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     S      48     S      48      4   25  136     4    4    4    6    9   10   12   14   29   37   52   76   96  115  123  126  129  131  131  133 
LCS_GDT     R      49     R      49      4    8  136     4    4    4    6    8    8   10   10   12   13   23   41   49   55   61   74  109  121  128  132 
LCS_GDT     G      50     G      50      5    8  136     4    4    6    7   13   20   35   53   69   84   96  108  117  121  124  127  129  131  131  133 
LCS_GDT     Q      51     Q      51      5    8  136     4    4    6    6    9   14   27   35   47   59   75   87  102  112  123  126  129  131  131  133 
LCS_GDT     S      52     S      52      5    8  136     3    4    6    9   11   21   25   31   40   44   48   52   57   67   69   73   94  114  116  126 
LCS_GDT     G      53     G      53      5    8  136     3    4    6    6    9   18   27   32   42   47   54   61   65   70   97  108  122  128  131  133 
LCS_GDT     N      54     N      54      5    8  136     3    4    6   11   15   22   30   39   46   59   69   89  101  116  123  126  129  131  131  133 
LCS_GDT     S      55     S      55      4   19  136     3    9   14   26   41   62   75   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      56     L      56      5   19  136     4    8   19   41   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     F      57     F      57      5   19  136     4   14   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T      58     T      58      5   19  136     5   15   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      59     L      59      5   19  136     5   19   26   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     E      60     E      60      5   19  136     3   10   25   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A      61     A      61     11   19  136     4   10   18   34   57   66   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H      62     H      62     11   19  136     4   11   19   34   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     I      63     I      63     11   19  136     4   11   19   34   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     N      64     N      64     11   19  136     4   11   18   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Y      65     Y      65     11   19  136     4   11   18   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      66     L      66     11   19  136     3   11   19   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H      67     H      67     11   19  136     3   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     E      68     E      68     11   19  136     3    7   18   27   36   59   75   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V      69     V      69     11   19  136     3    7   18   29   43   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     K      70     K      70     11   19  136     3    7   13   17   25   41   57   80   90   98  105  110  117  120  124  127  129  131  131  133 
LCS_GDT     L      71     L      71     11   19  136     3    7   13   18   29   44   60   81   91   98  105  112  117  121  124  127  129  131  131  133 
LCS_GDT     G      72     G      72      7   19  136     3    6   15   28   39   65   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T      73     T      73      4   19  136     3    6   14   26   39   57   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     E      74     E      74      6   18  136     0    4   12   24   46   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V      75     V      75      6   18  136     4    6   12   24   46   65   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     W      76     W      76      6   18  136     4   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V      77     V      77      6   18  136     4   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q      78     Q      78      6   18  136     3    6   14   29   43   65   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     T      79     T      79      6   13  136     3    6    9   27   43   63   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q      80     Q      80      6   13  136     4    9   20   38   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     I      81     I      81      5   13  136     4   12   20   38   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      82     L      82      5   13  136     4   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     G      83     G      83      4   10  136     3   10   25   30   51   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     F      84     F      84      4   10  136     3    5   14   22   41   62   73   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D      85     D      85      4   10  136     3    3    5   11   19   33   59   76   87   99  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R      86     R      86      3    9  136     3    3    5    9   13   24   29   40   61   71   86  100  113  119  124  127  129  131  131  133 
LCS_GDT     K      87     K      87      4    9  136     4    4    9   17   26   38   65   79   92  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R      88     R      88      4    9  136     4   13   23   30   42   62   75   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      89     L      89      4   11  136     5   12   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H      90     H      90      4   12  136     3    9   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V      91     V      91      4   12  136     3    8   18   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Y      92     Y      92      4   12  136     3   10   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H      93     H      93      4   12  136     3    5    8   22   41   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     S      94     S      94      6   12  136     3   11   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L      95     L      95      6   12  136     5   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H      96     H      96      6   12  136     5   12   20   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R      97     R      97      6   12  136     4   10   18   34   55   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A      98     A      98      6   12  136     3    6    9   22   46   65   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     G      99     G      99      6   12  136     3   10   18   27   46   65   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     F     100     F     100      4   12  136     3    3    4    7   22   42   60   80   86   98  105  110  117  120  124  127  129  131  131  133 
LCS_GDT     D     101     D     101      4   12  136     4   11   18   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     E     102     E     102      4    9  136     5   12   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V     103     V     103      4    9  136     3   12   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L     104     L     104      4    9  136     3    7   19   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A     105     A     105      4    9  136     3    6   16   24   37   53   70   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     A     106     A     106      4    9  136     3    7   19   32   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     S     107     S     107      4    9  136     3   12   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     E     108     E     108      4    9  136     4   11   19   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q     109     Q     109      4    9  136     4    6    8   16   24   37   52   81   89   99  104  112  117  121  124  127  129  131  131  133 
LCS_GDT     M     110     M     110      4    8  136     4    4    6   11   20   36   47   67   82   91   98  104  112  117  122  127  129  131  131  133 
LCS_GDT     L     111     L     111      6    8  136     4   19   26   35   52   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L     112     L     112      6    8  136     5   19   26   35   52   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H     113     H     113      6    8  136     5   14   23   31   51   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     V     114     V     114      6    8  136     5   14   23   27   49   63   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     D     115     D     115      6    8  136     5    9   13   22   39   62   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L     116     L     116      6    8  136     5    7   12   22   39   60   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q     120     Q     120      0    6  136     0    0    4    4    6   11   15   28   37   76   89  103  115  121  124  127  129  131  131  133 
LCS_GDT     S     121     S     121      3    6  136     3    3    4    4   11   15   18   19   21   23   64   95  107  121  124  127  129  131  131  133 
LCS_GDT     A     122     A     122      4   18  136     3    4    6   11   16   30   37   49   73   91  105  112  117  121  124  127  129  131  131  133 
LCS_GDT     P     123     P     123      4   18  136     3    5    8   18   28   42   62   79   92  100  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     F     124     F     124      4   18  136     3    4   13   21   31   49   68   81   93  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     G     125     G     125     15   18  136     4   14   15   21   31   44   63   78   90   99  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H     126     H     126     15   18  136    13   14   15   15   21   26   41   52   65   78   88  105  117  119  124  127  129  131  131  133 
LCS_GDT     T     127     T     127     15   18  136    13   14   15   15   22   28   41   52   63   74   84   96  109  117  123  126  129  131  131  133 
LCS_GDT     T     128     T     128     15   18  136    13   14   15   15   18   33   49   59   75   89  101  112  117  121  124  127  129  131  131  133 
LCS_GDT     V     129     V     129     15   18  136    13   14   15   26   41   62   73   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     C     130     C     130     15   18  136    13   14   15   15   28   41   57   76   87   95  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     R     131     R     131     15   18  136    13   14   15   15   24   40   51   62   79   91  104  112  117  121  124  127  129  131  131  133 
LCS_GDT     L     132     L     132     15   18  136    13   14   15   15   27   43   66   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     N     133     N     133     15   18  136    13   14   15   34   52   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     H     134     H     134     15   18  136    13   14   16   26   39   54   73   83   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     L     135     L     135     15   18  136    13   14   15   15   21   27   37   62   85   97  105  112  117  121  124  127  129  131  131  133 
LCS_GDT     V     136     V     136     15   18  136    13   14   17   29   52   65   76   84   93   99  105  110  117  121  124  127  129  131  131  133 
LCS_GDT     E     137     E     137     15   18  136    13   14   21   42   57   67   76   85   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q     138     Q     138     15   18  136    13   14   15   15   22   49   74   84   94  101  108  112  117  121  124  127  129  131  131  133 
LCS_GDT     Q     139     Q     139     15   18  136     8   14   15   15   18   25   38   55   74   87   95  101  108  114  119  124  126  129  131  133 
LCS_GDT     E     140     E     140      6   17   88     3    3    6    7   12   18   32   41   57   66   78   90  101  108  113  116  123  126  129  131 
LCS_GDT     G     141     G     141      6    9   86     3    5    6    7    9   11   16   21   28   35   38   43   47   51   83   94  106  116  122  125 
LCS_GDT     A     142     A     142      6    9   31     4    5    6    7    9   14   18   20   23   25   29   34   37   40   44   48   51   54   55   63 
LCS_GDT     Q     143     Q     143      6    9   30     4    5    6    9   12   16   19   21   23   25   26   29   31   35   39   43   47   49   52   53 
LCS_GDT     A     144     A     144      6    9   30     4    5    6    7   12   16   19   21   23   25   25   26   28   34   36   39   46   48   48   52 
LCS_GDT     P     145     P     145      6    9   30     4    5    6    7    9   16   19   21   23   25   25   26   27   27   29   31   33   38   40   46 
LCS_GDT     Q     146     Q     146      6    9   30     3    5    6    8   12   16   19   21   23   25   25   26   27   29   29   36   37   43   46   49 
LCS_GDT     Y     147     Y     147      6    9   30     3    5    6    7    9   11   14   17   20   25   25   26   27   27   29   29   31   34   39   43 
LCS_GDT     M     148     M     148      6    9   30     3    5    6    7    9    9   14   19   23   25   25   26   27   27   29   29   31   31   32   34 
LCS_GDT     G     149     G     149      6    9   30     0    3    6    7    9   14   18   21   23   25   25   26   27   27   29   29   31   31   32   34 
LCS_GDT     R     150     R     150      0    8   30     0    2    4    8   12   16   19   21   23   25   25   26   27   27   29   29   31   34   35   38 
LCS_AVERAGE  LCS_A:  34.61  (   5.89   10.28   87.65 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     19     26     42     57     67     76     85     94    101    108    112    117    121    124    127    129    131    131    133 
GDT PERCENT_CA  10.20  12.93  17.69  28.57  38.78  45.58  51.70  57.82  63.95  68.71  73.47  76.19  79.59  82.31  84.35  86.39  87.76  89.12  89.12  90.48
GDT RMS_LOCAL    0.29   0.43   0.94   1.61   1.83   2.09   2.26   2.56   2.80   3.04   3.38   3.59   3.73   3.95   4.07   4.20   4.34   4.48   4.48   4.64
GDT RMS_ALL_CA  12.12  11.95  11.28  10.74  10.77  10.70  10.73  10.66  10.56  10.56  10.58  10.58  10.56  10.55  10.56  10.59  10.60  10.64  10.64  10.58

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          4.784
LGA    P       2      P       2          2.975
LGA    A       3      A       3          2.529
LGA    L       4      L       4          1.019
LGA    I       5      I       5          2.310
LGA    T       6      T       6          2.871
LGA    Y       7      Y       7          1.842
LGA    R       8      R       8          2.525
LGA    T       9      T       9          2.624
LGA    T      10      T      10          5.513
LGA    V      11      V      11          4.494
LGA    Q      12      Q      12          1.815
LGA    E      13      E      13          1.063
LGA    D      14      D      14          1.415
LGA    W      15      W      15          2.730
LGA    V      16      V      16          2.898
LGA    D      17      D      17          2.346
LGA    Y      18      Y      18          3.907
LGA    N      19      N      19          6.483
LGA    G      20      G      20         11.490
LGA    H      21      H      21          7.290
LGA    L      22      L      22          4.895
LGA    R      23      R      23          1.971
LGA    D      24      D      24          1.419
LGA    A      25      A      25          1.868
LGA    F      26      F      26          2.692
LGA    Y      27      Y      27          2.773
LGA    L      28      L      28          2.077
LGA    L      29      L      29          1.880
LGA    I      30      I      30          2.672
LGA    F      31      F      31          2.566
LGA    S      32      S      32          1.617
LGA    Y      33      Y      33          1.989
LGA    A      34      A      34          3.017
LGA    T      35      T      35          2.911
LGA    D      36      D      36          1.836
LGA    A      37      A      37          2.599
LGA    L      38      L      38          3.578
LGA    M      39      M      39          2.998
LGA    D      40      D      40          1.982
LGA    R      41      R      41          3.401
LGA    I      42      I      42          3.970
LGA    G      43      G      43          5.199
LGA    L      44      L      44          7.212
LGA    D      45      D      45          8.695
LGA    A      46      A      46          6.708
LGA    D      47      D      47          7.740
LGA    S      48      S      48         11.350
LGA    R      49      R      49         14.280
LGA    G      50      G      50          9.693
LGA    Q      51      Q      51         12.361
LGA    S      52      S      52         15.205
LGA    G      53      G      53         11.858
LGA    N      54      N      54         10.522
LGA    S      55      S      55          3.068
LGA    L      56      L      56          1.174
LGA    F      57      F      57          1.880
LGA    T      58      T      58          1.064
LGA    L      59      L      59          0.689
LGA    E      60      E      60          1.919
LGA    A      61      A      61          3.880
LGA    H      62      H      62          3.572
LGA    I      63      I      63          3.178
LGA    N      64      N      64          2.714
LGA    Y      65      Y      65          2.315
LGA    L      66      L      66          1.963
LGA    H      67      H      67          1.988
LGA    E      68      E      68          4.197
LGA    V      69      V      69          3.226
LGA    K      70      K      70          6.042
LGA    L      71      L      71          5.610
LGA    G      72      G      72          3.176
LGA    T      73      T      73          4.311
LGA    E      74      E      74          2.729
LGA    V      75      V      75          3.286
LGA    W      76      W      76          1.314
LGA    V      77      V      77          2.083
LGA    Q      78      Q      78          4.187
LGA    T      79      T      79          4.687
LGA    Q      80      Q      80          3.754
LGA    I      81      I      81          3.547
LGA    L      82      L      82          3.613
LGA    G      83      G      83          2.334
LGA    F      84      F      84          3.818
LGA    D      85      D      85          7.445
LGA    R      86      R      86          9.934
LGA    K      87      K      87          6.441
LGA    R      88      R      88          3.344
LGA    L      89      L      89          1.220
LGA    H      90      H      90          3.373
LGA    V      91      V      91          3.924
LGA    Y      92      Y      92          2.414
LGA    H      93      H      93          2.933
LGA    S      94      S      94          2.175
LGA    L      95      L      95          1.681
LGA    H      96      H      96          1.529
LGA    R      97      R      97          2.191
LGA    A      98      A      98          3.658
LGA    G      99      G      99          3.953
LGA    F     100      F     100          6.050
LGA    D     101      D     101          2.049
LGA    E     102      E     102          1.961
LGA    V     103      V     103          1.632
LGA    L     104      L     104          2.415
LGA    A     105      A     105          4.489
LGA    A     106      A     106          3.071
LGA    S     107      S     107          1.472
LGA    E     108      E     108          2.929
LGA    Q     109      Q     109          5.380
LGA    M     110      M     110          6.757
LGA    L     111      L     111          2.467
LGA    L     112      L     112          2.532
LGA    H     113      H     113          1.963
LGA    V     114      V     114          2.825
LGA    D     115      D     115          4.522
LGA    L     116      L     116          5.000
LGA    Q     120      Q     120          9.680
LGA    S     121      S     121          8.863
LGA    A     122      A     122          9.189
LGA    P     123      P     123          7.349
LGA    F     124      F     124          5.945
LGA    G     125      G     125          7.484
LGA    H     126      H     126         10.459
LGA    T     127      T     127         12.621
LGA    T     128      T     128          8.802
LGA    V     129      V     129          3.908
LGA    C     130      C     130          7.752
LGA    R     131      R     131          8.266
LGA    L     132      L     132          4.199
LGA    N     133      N     133          1.431
LGA    H     134      H     134          4.275
LGA    L     135      L     135          6.059
LGA    V     136      V     136          5.197
LGA    E     137      E     137          2.493
LGA    Q     138      Q     138          4.608
LGA    Q     139      Q     139          9.823
LGA    E     140      E     140         13.635
LGA    G     141      G     141         17.122
LGA    A     142      A     142         22.687
LGA    Q     143      Q     143         26.855
LGA    A     144      A     144         29.111
LGA    P     145      P     145         33.781
LGA    Q     146      Q     146         36.667
LGA    Y     147      Y     147         40.815
LGA    M     148      M     148         41.961
LGA    G     149      G     149         44.444
LGA    R     150      R     150         47.218

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  150  147    4.0     85    2.56    46.429    40.229     3.194

LGA_LOCAL      RMSD =  2.561  Number of atoms =   85  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.602  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  9.949  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.381311 * X  +   0.749338 * Y  +   0.541382 * Z  +  45.561047
  Y_new =   0.795650 * X  +  -0.032153 * Y  +   0.604903 * Z  +  11.581779
  Z_new =   0.470684 * X  +   0.661407 * Y  +  -0.583951 * Z  +   5.753306 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.294079   -0.847514  [ DEG:   131.4410    -48.5590 ]
  Theta =  -0.490066   -2.651527  [ DEG:   -28.0787   -151.9213 ]
  Phi   =   2.017702   -1.123891  [ DEG:   115.6058    -64.3942 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0364TS168_3-D1                               
REMARK     2: T0364_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0364TS168_3-D1.T0364_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  150  147   4.0   85   2.56  40.229     9.95
REMARK  ---------------------------------------------------------- 
MOLECULE T0364TS168_3-D1
PFRMAT TS
TARGET T0364
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      27.541  10.298  10.385  1.00 25.00           C
ATOM      2  CA  PRO     2      30.385  12.434  11.677  1.00 25.00           C
ATOM      3  CA  ALA     3      34.088  12.918  10.923  1.00 25.00           C
ATOM      4  CA  LEU     4      36.618  12.208   8.139  1.00 25.00           C
ATOM      5  CA  ILE     5      37.189  12.814   4.432  1.00 25.00           C
ATOM      6  CA  THR     6      38.457  12.361   0.836  1.00 25.00           C
ATOM      7  CA  TYR     7      39.864   9.561  -1.346  1.00 25.00           C
ATOM      8  CA  ARG     8      41.229   6.681  -3.416  1.00 25.00           C
ATOM      9  CA  THR     9      42.858   3.317  -3.801  1.00 25.00           C
ATOM     10  CA  THR    10      45.093   1.372  -6.127  1.00 25.00           C
ATOM     11  CA  VAL    11      46.729  -1.968  -5.320  1.00 25.00           C
ATOM     12  CA  GLN    12      44.272  -4.295  -7.059  1.00 25.00           C
ATOM     13  CA  GLU    13      45.453  -7.188  -9.141  1.00 25.00           C
ATOM     14  CA  ASP    14      48.957  -5.989  -8.166  1.00 25.00           C
ATOM     15  CA  TRP    15      48.444  -7.306  -4.607  1.00 25.00           C
ATOM     16  CA  VAL    16      47.865 -11.058  -3.994  1.00 25.00           C
ATOM     17  CA  ASP    17      50.826 -13.060  -5.370  1.00 25.00           C
ATOM     18  CA  TYR    18      51.892 -16.743  -5.051  1.00 25.00           C
ATOM     19  CA  ASN    19      50.986 -18.060  -1.630  1.00 25.00           C
ATOM     20  CA  GLY    20      53.017 -16.187   1.065  1.00 25.00           C
ATOM     21  CA  HIS    21      50.449 -13.483   1.962  1.00 25.00           C
ATOM     22  CA  LEU    22      48.032 -10.641   1.612  1.00 25.00           C
ATOM     23  CA  ARG    23      50.712  -8.711  -0.361  1.00 25.00           C
ATOM     24  CA  ASP    24      51.143  -6.517   2.715  1.00 25.00           C
ATOM     25  CA  ALA    25      53.749  -4.016   1.441  1.00 25.00           C
ATOM     26  CA  PHE    26      51.503  -3.159  -1.541  1.00 25.00           C
ATOM     27  CA  TYR    27      48.532  -2.630   0.816  1.00 25.00           C
ATOM     28  CA  LEU    28      50.664  -0.341   3.028  1.00 25.00           C
ATOM     29  CA  LEU    29      51.749   1.663  -0.050  1.00 25.00           C
ATOM     30  CA  ILE    30      48.095   2.008  -1.145  1.00 25.00           C
ATOM     31  CA  PHE    31      47.133   3.212   2.361  1.00 25.00           C
ATOM     32  CA  SER    32      49.975   5.779   2.286  1.00 25.00           C
ATOM     33  CA  TYR    33      48.804   7.012  -1.146  1.00 25.00           C
ATOM     34  CA  ALA    34      45.223   7.347   0.169  1.00 25.00           C
ATOM     35  CA  THR    35      46.491   9.326   3.192  1.00 25.00           C
ATOM     36  CA  ASP    36      48.486  11.633   0.875  1.00 25.00           C
ATOM     37  CA  ALA    37      45.379  12.181  -1.296  1.00 25.00           C
ATOM     38  CA  LEU    38      43.317  13.013   1.823  1.00 25.00           C
ATOM     39  CA  MET    39      45.995  15.504   2.958  1.00 25.00           C
ATOM     40  CA  ASP    40      45.981  17.136  -0.506  1.00 25.00           C
ATOM     41  CA  ARG    41      42.162  17.407  -0.391  1.00 25.00           C
ATOM     42  CA  ILE    42      42.356  19.010   3.082  1.00 25.00           C
ATOM     43  CA  GLY    43      45.290  20.008   5.289  1.00 25.00           C
ATOM     44  CA  LEU    44      47.064  17.636   7.584  1.00 25.00           C
ATOM     45  CA  ASP    45      50.416  17.145   5.895  1.00 25.00           C
ATOM     46  CA  ALA    46      51.363  19.997   3.519  1.00 25.00           C
ATOM     47  CA  ASP    47      52.159  23.743   3.499  1.00 25.00           C
ATOM     48  CA  SER    48      48.970  24.457   5.495  1.00 25.00           C
ATOM     49  CA  ARG    49      49.924  21.753   8.034  1.00 25.00           C
ATOM     50  CA  GLY    50      53.426  23.269   8.368  1.00 25.00           C
ATOM     51  CA  GLN    51      51.898  26.737   8.925  1.00 25.00           C
ATOM     52  CA  SER    52      55.162  28.452   7.923  1.00 25.00           C
ATOM     53  CA  GLY    53      56.936  25.776   5.778  1.00 25.00           C
ATOM     54  CA  ASN    54      58.541  22.867   7.647  1.00 25.00           C
ATOM     55  CA  SER    55      57.159  20.085   5.447  1.00 25.00           C
ATOM     56  CA  LEU    56      55.964  16.533   4.941  1.00 25.00           C
ATOM     57  CA  PHE    57      57.103  12.913   5.363  1.00 25.00           C
ATOM     58  CA  THR    58      57.355   9.647   7.269  1.00 25.00           C
ATOM     59  CA  LEU    59      58.390   9.204  10.920  1.00 25.00           C
ATOM     60  CA  GLU    60      55.432   7.096  12.198  1.00 25.00           C
ATOM     61  CA  ALA    61      54.045   6.136   8.749  1.00 25.00           C
ATOM     62  CA  HIS    62      52.988   2.973  10.599  1.00 25.00           C
ATOM     63  CA  ILE    63      50.402   0.770   8.803  1.00 25.00           C
ATOM     64  CA  ASN    64      48.492  -1.399  11.276  1.00 25.00           C
ATOM     65  CA  TYR    65      46.257  -3.495   9.011  1.00 25.00           C
ATOM     66  CA  LEU    66      43.464  -5.957   9.636  1.00 25.00           C
ATOM     67  CA  HIS    67      40.095  -6.645   8.107  1.00 25.00           C
ATOM     68  CA  GLU    68      38.937  -6.737   4.499  1.00 25.00           C
ATOM     69  CA  VAL    69      38.962  -4.809   1.258  1.00 25.00           C
ATOM     70  CA  LYS    70      35.543  -6.109   0.076  1.00 25.00           C
ATOM     71  CA  LEU    71      36.457  -5.347  -3.573  1.00 25.00           C
ATOM     72  CA  GLY    72      37.310  -2.408  -5.832  1.00 25.00           C
ATOM     73  CA  THR    73      34.980  -0.498  -3.464  1.00 25.00           C
ATOM     74  CA  GLU    74      38.180   0.628  -1.728  1.00 25.00           C
ATOM     75  CA  VAL    75      40.957   1.674   0.607  1.00 25.00           C
ATOM     76  CA  TRP    76      39.202   5.063   1.134  1.00 25.00           C
ATOM     77  CA  VAL    77      41.279   7.433   3.253  1.00 25.00           C
ATOM     78  CA  GLN    78      42.154  10.040   5.888  1.00 25.00           C
ATOM     79  CA  THR    79      41.781  13.859   6.255  1.00 25.00           C
ATOM     80  CA  GLN    80      42.474  14.365   9.968  1.00 25.00           C
ATOM     81  CA  ILE    81      44.373  17.101  11.767  1.00 25.00           C
ATOM     82  CA  LEU    82      45.092  16.066  15.341  1.00 25.00           C
ATOM     83  CA  GLY    83      47.150  13.603  17.360  1.00 25.00           C
ATOM     84  CA  PHE    84      48.675  16.246  19.593  1.00 25.00           C
ATOM     85  CA  ASP    85      50.826  15.000  22.486  1.00 25.00           C
ATOM     86  CA  ARG    86      54.148  14.331  20.818  1.00 25.00           C
ATOM     87  CA  LYS    87      53.602  17.076  18.171  1.00 25.00           C
ATOM     88  CA  ARG    88      52.687  14.839  15.252  1.00 25.00           C
ATOM     89  CA  LEU    89      51.084  16.092  11.992  1.00 25.00           C
ATOM     90  CA  HIS    90      48.170  13.593  12.196  1.00 25.00           C
ATOM     91  CA  VAL    91      46.886  12.084   8.986  1.00 25.00           C
ATOM     92  CA  TYR    92      45.153   9.002  10.460  1.00 25.00           C
ATOM     93  CA  HIS    93      41.607   7.723  10.352  1.00 25.00           C
ATOM     94  CA  SER    94      41.999   5.047   7.703  1.00 25.00           C
ATOM     95  CA  LEU    95      39.610   2.899   5.634  1.00 25.00           C
ATOM     96  CA  HIS    96      36.069   1.899   4.551  1.00 25.00           C
ATOM     97  CA  ARG    97      33.653  -1.073   4.573  1.00 25.00           C
ATOM     98  CA  ALA    98      30.293  -2.815   4.988  1.00 25.00           C
ATOM     99  CA  GLY    99      27.591  -3.503   7.598  1.00 25.00           C
ATOM    100  CA  PHE   100      28.077  -1.257  10.700  1.00 25.00           C
ATOM    101  CA  ASP   101      31.746  -0.392  10.080  1.00 25.00           C
ATOM    102  CA  GLU   102      34.719  -2.651   9.257  1.00 25.00           C
ATOM    103  CA  VAL   103      38.038  -0.917   8.588  1.00 25.00           C
ATOM    104  CA  LEU   104      41.131  -1.869   6.590  1.00 25.00           C
ATOM    105  CA  ALA   105      43.964   0.032   4.976  1.00 25.00           C
ATOM    106  CA  ALA   106      45.399   1.396   8.172  1.00 25.00           C
ATOM    107  CA  SER   107      46.978   4.035  10.493  1.00 25.00           C
ATOM    108  CA  GLU   108      49.581   6.601  11.380  1.00 25.00           C
ATOM    109  CA  GLN   109      49.172   7.124   7.638  1.00 25.00           C
ATOM    110  CA  MET   110      51.423  10.160   7.082  1.00 25.00           C
ATOM    111  CA  LEU   111      52.713  11.563  10.296  1.00 25.00           C
ATOM    112  CA  LEU   112      55.537  14.055   9.988  1.00 25.00           C
ATOM    113  CA  HIS   113      56.107  17.793  10.039  1.00 25.00           C
ATOM    114  CA  VAL   114      59.704  17.268   8.816  1.00 25.00           C
ATOM    115  CA  ASP   115      62.703  19.581   9.004  1.00 25.00           C
ATOM    116  CA  LEU   116      64.978  20.633   6.142  1.00 25.00           C
ATOM    117  CA  ALA   117      67.613  22.589   7.956  1.00 25.00           C
ATOM    118  CA  GLY   118      68.483  25.202  10.509  1.00 25.00           C
ATOM    119  CA  PRO   119      67.429  25.805  14.111  1.00 25.00           C
ATOM    120  CA  GLN   120      65.519  24.379  17.072  1.00 25.00           C
ATOM    121  CA  SER   121      62.571  26.715  16.436  1.00 25.00           C
ATOM    122  CA  ALA   122      60.832  24.471  18.882  1.00 25.00           C
ATOM    123  CA  PRO   123      57.055  24.440  19.251  1.00 25.00           C
ATOM    124  CA  PHE   124      54.747  23.223  16.432  1.00 25.00           C
ATOM    125  CA  GLY   125      52.823  26.449  17.268  1.00 25.00           C
ATOM    126  CA  HIS   126      51.328  24.450  20.136  1.00 25.00           C
ATOM    127  CA  THR   127      48.397  26.746  21.033  1.00 25.00           C
ATOM    128  CA  THR   128      48.157  27.904  17.390  1.00 25.00           C
ATOM    129  CA  VAL   129      48.154  24.261  16.207  1.00 25.00           C
ATOM    130  CA  CYS   130      45.379  23.426  18.711  1.00 25.00           C
ATOM    131  CA  ARG   131      43.329  26.414  17.473  1.00 25.00           C
ATOM    132  CA  LEU   132      43.800  25.267  13.849  1.00 25.00           C
ATOM    133  CA  ASN   133      42.669  21.733  14.795  1.00 25.00           C
ATOM    134  CA  HIS   134      39.574  23.163  16.539  1.00 25.00           C
ATOM    135  CA  LEU   135      38.763  25.257  13.437  1.00 25.00           C
ATOM    136  CA  VAL   136      39.122  22.155  11.220  1.00 25.00           C
ATOM    137  CA  GLU   137      36.792  20.195  13.541  1.00 25.00           C
ATOM    138  CA  GLN   138      34.225  23.033  13.402  1.00 25.00           C
ATOM    139  CA  GLN   139      34.430  23.064   9.579  1.00 25.00           C
ATOM    140  CA  GLU   140      31.784  25.791   9.493  1.00 25.00           C
ATOM    141  CA  GLY   141      31.630  29.048  11.394  1.00 25.00           C
ATOM    142  CA  ALA   142      31.226  32.016   9.064  1.00 25.00           C
ATOM    143  CA  GLN   143      27.657  31.344   7.939  1.00 25.00           C
ATOM    144  CA  ALA   144      27.724  30.030   4.385  1.00 25.00           C
ATOM    145  CA  PRO   145      28.308  32.440   1.513  1.00 25.00           C
ATOM    146  CA  GLN   146      27.419  29.671  -1.006  1.00 25.00           C
ATOM    147  CA  TYR   147      27.764  30.895  -4.590  1.00 25.00           C
ATOM    148  CA  MET   148      29.939  33.945  -3.872  1.00 25.00           C
ATOM    149  CA  GLY   149      32.317  32.555  -6.466  1.00 25.00           C
ATOM    150  CA  ARG   150      34.544  32.471  -9.582  1.00 25.00           C
TER
END
