
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  150 (  150),  selected  147 , name T0364TS168_4-D1
# Molecule2: number of CA atoms  147 ( 1178),  selected  147 , name T0364_D1.pdb
# PARAMETERS: T0364TS168_4-D1.T0364_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   136         1 - 139         4.92     9.97
  LONGEST_CONTINUOUS_SEGMENT:   136         2 - 140         4.99     9.86
  LCS_AVERAGE:     88.07

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        18 - 44          1.83    10.85
  LCS_AVERAGE:     12.13

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        24 - 44          0.82    11.28
  LCS_AVERAGE:      6.13

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      4    6  136     3    4   12   21   29   46   65   82   90  102  108  110  114  120  123  124  127  129  132  134 
LCS_GDT     P       2     P       2      4    8  136     3    5   11   27   35   48   70   78   93  101  108  112  117  120  123  124  127  129  132  134 
LCS_GDT     A       3     A       3      4    8  136     3    6   12   29   42   55   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L       4     L       4      4    8  136     0   11   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     I       5     I       5      4    8  136     1    6   14   29   45   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T       6     T       6      4    8  136     3   10   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Y       7     Y       7      4    8  136     3    9   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R       8     R       8      4   10  136     3    6   13   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T       9     T       9      4   10  136     3    4    8   16   31   55   77   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T      10     T      10      4   10  136     3    4   13   25   36   57   76   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V      11     V      11      4   10  136     3    9   17   32   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Q      12     Q      12      7   10  136     4    8   17   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E      13     E      13      7   10  136     7   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      14     D      14      7   10  136     7   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     W      15     W      15      7   10  136     4   10   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V      16     V      16      7   10  136     5   10   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      17     D      17      7   26  136     4    8   17   33   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Y      18     Y      18      7   27  136     4    9   15   34   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     N      19     N      19      5   27  136     4    5   11   19   26   41   73   80   96  103  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     G      20     G      20      5   27  136     3    5    5    6   18   39   46   57   78   94  102  108  113  118  122  124  127  129  132  134 
LCS_GDT     H      21     H      21      5   27  136     3   15   21   28   37   57   77   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      22     L      22      5   27  136     1    5   10   20   33   58   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R      23     R      23     20   27  136     0    5   17   29   44   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      24     D      24     21   27  136     3   19   21   30   44   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A      25     A      25     21   27  136    14   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     F      26     F      26     21   27  136    14   19   21   28   37   60   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Y      27     Y      27     21   27  136    15   19   21   28   41   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      28     L      28     21   27  136    14   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      29     L      29     21   27  136    15   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     I      30     I      30     21   27  136    15   19   21   28   41   60   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     F      31     F      31     21   27  136    15   19   21   28   37   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     S      32     S      32     21   27  136    15   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Y      33     Y      33     21   27  136    15   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A      34     A      34     21   27  136    15   19   21   28   35   59   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T      35     T      35     21   27  136    15   19   21   28   35   57   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      36     D      36     21   27  136    15   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A      37     A      37     21   27  136    15   19   21   28   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      38     L      38     21   27  136    15   19   21   28   35   57   76   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     M      39     M      39     21   27  136    15   19   21   25   34   52   77   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      40     D      40     21   27  136    15   19   21   26   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R      41     R      41     21   27  136    15   19   21   28   35   59   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     I      42     I      42     21   27  136    15   19   21   28   34   48   71   89   99  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     G      43     G      43     21   27  136     4   16   20   22   30   50   68   92   99  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      44     L      44     21   27  136     3    3    4   25   30   52   72   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      45     D      45      4   26  136     4    4    4    7   11   18   22   26   42   63   81   96  106  112  116  124  127  129  132  134 
LCS_GDT     A      46     A      46      4   24  136     4    4    4    5    7    8   27   35   40   43   49   82   96  105  116  123  126  128  131  134 
LCS_GDT     D      47     D      47      4   24  136     4    4   11   16   20   21   23   30   37   59   81   98  102  112  116  123  127  129  132  134 
LCS_GDT     S      48     S      48      4    6  136     4    4    6    6   10   12   20   23   27   29   41   87   92  106  116  123  126  129  132  134 
LCS_GDT     R      49     R      49      4    7  136     4    4    4    5    7    8    9   10   12   20   26   30   31   36   52   72   80   97  116  124 
LCS_GDT     G      50     G      50      4    7  136     4    4    4    5    6    9   25   29   43   60   73   96  108  119  123  124  127  129  132  134 
LCS_GDT     Q      51     Q      51      4    7  136     4    4    4    6   11   15   25   28   35   53   64   79  102  113  120  124  126  129  132  134 
LCS_GDT     S      52     S      52      4    7  136     3    4    6    8   12   24   32   40   45   49   50   56   65   91  107  118  126  129  132  134 
LCS_GDT     G      53     G      53      4    7  136     3    3    4    6   11   14   19   29   38   46   48   51   57   63   75  106  113  119  126  131 
LCS_GDT     N      54     N      54      4    7  136     1    4    6    8   12   31   36   42   47   57   78  103  113  120  123  124  127  129  132  134 
LCS_GDT     S      55     S      55      4    9  136     3   16   19   27   39   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      56     L      56      6   11  136     3    8   17   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     F      57     F      57      6   11  136     7   16   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T      58     T      58      6   11  136     6   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      59     L      59      6   12  136     6   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E      60     E      60      6   12  136     4   11   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A      61     A      61      6   12  136     7   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H      62     H      62      4   19  136     3    4   13   22   29   44   52   65   83   98  106  110  114  120  123  124  127  129  132  134 
LCS_GDT     I      63     I      63      5   19  136     3    7   16   29   49   60   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     N      64     N      64      5   19  136     3    6   14   29   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Y      65     Y      65      5   19  136     3    7   14   29   49   60   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      66     L      66      7   19  136     3    6   16   29   49   60   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H      67     H      67      7   19  136     3    7   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E      68     E      68      7   19  136     3    6   17   29   42   56   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V      69     V      69      7   19  136     3    8   17   29   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     K      70     K      70      7   19  136     3    6   10   16   22   33   44   66   86  100  107  112  115  119  123  124  127  129  132  134 
LCS_GDT     L      71     L      71      7   19  136     3    6    9   15   21   27   40   61   71   89  102  112  113  117  121  124  127  129  132  134 
LCS_GDT     G      72     G      72      7   19  136     3    9   20   31   49   58   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T      73     T      73      7   19  136     3    9   18   31   43   57   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E      74     E      74      7   19  136     3    6   14   31   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V      75     V      75      7   19  136     3    5   16   32   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     W      76     W      76      7   19  136     6   10   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V      77     V      77      7   19  136     4    9   20   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Q      78     Q      78      7   19  136     4    7   14   28   44   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T      79     T      79      7   19  136     4    7   14   25   41   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Q      80     Q      80      5   19  136     4    4    9   22   33   54   74   90  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     I      81     I      81      5   12  136     4    8   16   29   41   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      82     L      82      5   12  136     4    4   10   15   32   46   70   89  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     G      83     G      83      4   12  136     4    7   12   28   38   57   77   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     F      84     F      84      4   12  136     4    6   14   25   40   57   76   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D      85     D      85      4   12  136     4    4    8   17   25   40   60   81   93  102  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R      86     R      86      4   12  136     3    3    6   18   26   40   54   71   89  101  108  112  117  120  123  124  127  129  132  134 
LCS_GDT     K      87     K      87      3   13  136     3   10   17   21   27   40   59   81   93  102  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R      88     R      88     12   24  136     3    8   17   23   38   53   77   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      89     L      89     12   24  136     5   11   20   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H      90     H      90     12   24  136     5   10   21   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V      91     V      91     12   24  136     4   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Y      92     Y      92     12   24  136     3    9   20   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H      93     H      93     12   24  136     4   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     S      94     S      94     12   24  136     5   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L      95     L      95     12   24  136     5   11   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H      96     H      96     12   24  136     5   11   21   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R      97     R      97     12   24  136     5   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A      98     A      98     12   24  136     5   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     G      99     G      99     12   24  136     7   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     F     100     F     100      4   24  136     3    3    6    8   32   45   64   84   97  103  108  112  117  120  123  124  127  129  132  134 
LCS_GDT     D     101     D     101      4   24  136     7   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E     102     E     102      6   24  136     5   11   19   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V     103     V     103      6   24  136     5   11   18   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L     104     L     104      6   24  136     3    6   17   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A     105     A     105      6   24  136     3    4   15   28   43   55   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     A     106     A     106      6   24  136     4   11   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     S     107     S     107      6   24  136     7   12   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E     108     E     108      4   24  136     3    7   13   20   29   40   51   77   88  101  106  110  117  120  123  124  127  129  132  134 
LCS_GDT     Q     109     Q     109      4   24  136     3    4   13   20   29   40   51   75   88  100  106  110  114  120  123  124  127  129  132  134 
LCS_GDT     M     110     M     110      4   24  136     1   15   19   21   26   47   76   90  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L     111     L     111      4   24  136     0   15   19   30   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L     112     L     112      5    8  136     3   14   21   25   40   57   79   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H     113     H     113      5    8  136     3    9   16   23   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V     114     V     114      5    8  136     3    4   14   26   40   57   76   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     D     115     D     115      5    8  136     6   14   18   21   35   55   75   91  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L     116     L     116      5    8  136     6   13   17   21   25   36   51   66   84   97  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Q     120     Q     120      3    7  136     3    4    5    6    7    8   12   16   20   34   39   45   82   91  113  122  126  129  132  134 
LCS_GDT     S     121     S     121      5   10  136     3    4    5    7   11   14   26   32   50   61   90  107  117  120  123  124  127  129  132  134 
LCS_GDT     A     122     A     122      5   19  136     3    4    6   10   23   31   37   44   53   80   97  109  117  120  123  124  127  129  132  134 
LCS_GDT     P     123     P     123      5   19  136     4    8   15   22   31   46   66   82   95  104  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     F     124     F     124      5   19  136     5   13   19   24   39   55   71   90   99  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     G     125     G     125      5   19  136     0    4   11   20   26   39   58   75   90  101  108  112  117  120  123  124  127  129  132  134 
LCS_GDT     H     126     H     126     15   19  136    13   16   19   23   39   55   72   92   99  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T     127     T     127     15   19  136    13   16   19   24   36   55   72   92   99  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     T     128     T     128     15   19  136    13   16   19   31   43   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V     129     V     129     15   19  136    13   16   22   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     C     130     C     130     15   19  136    13   16   21   33   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     R     131     R     131     15   19  136    13   16   19   29   42   55   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L     132     L     132     15   19  136    13   16   19   32   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     N     133     N     133     15   19  136    13   16   19   35   49   61   80   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     H     134     H     134     15   19  136    13   16   19   25   39   56   77   92  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     L     135     L     135     15   19  136    13   16   19   21   31   46   69   88  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     V     136     V     136     15   19  136    13   16   19   21   32   53   72   89  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     E     137     E     137     15   19  136    13   16   19   21   32   53   72   89  100  105  109  112  117  120  123  124  127  129  132  134 
LCS_GDT     Q     138     Q     138     15   19  136    13   16   19   21   25   37   54   75   86   97  104  110  114  119  122  124  126  129  132  134 
LCS_GDT     Q     139     Q     139     15   19  136     6   16   19   21   25   32   48   66   80   91  100  107  113  117  121  124  126  129  132  134 
LCS_GDT     E     140     E     140     15   19  136     3   10   15   21   23   28   36   50   67   84   95  100  106  114  119  122  125  127  132  133 
LCS_GDT     G     141     G     141      4   19   89     3    4    7   12   20   26   29   41   50   65   79   93  103  109  117  121  125  127  132  133 
LCS_GDT     A     142     A     142      4    7   86     3    4    6    7   10   13   16   18   20   35   37   41   45   48   51   59   85  104  115  120 
LCS_GDT     Q     143     Q     143      4    7   34     3    4    6    7   10   13   16   18   19   21   23   25   35   40   41   46   50   58   63   67 
LCS_GDT     A     144     A     144      4    7   27     3    4    5    6    8    9   11   14   18   20   23   24   25   26   32   39   41   43   52   58 
LCS_GDT     P     145     P     145      3    7   27     3    3    5    7   10   13   16   18   19   21   23   24   25   26   32   39   39   43   45   49 
LCS_GDT     Q     146     Q     146      3    7   27     1    3    4    7   10   13   16   18   19   21   23   24   25   26   36   39   41   43   45   49 
LCS_GDT     Y     147     Y     147      4    7   27     3    4    6    7   10   13   16   18   19   21   23   24   25   25   26   27   30   34   40   44 
LCS_GDT     M     148     M     148      4    7   27     3    4    4    6    9   10   14   14   18   19   21   24   24   25   26   27   29   31   33   34 
LCS_GDT     G     149     G     149      4    7   27     3    4    4    6    9   11   14   16   18   20   23   24   24   25   26   27   29   31   33   34 
LCS_GDT     R     150     R     150      4    7   27     3    4    6    7    9   13   16   18   19   21   23   24   25   25   26   27   30   31   34   40 
LCS_AVERAGE  LCS_A:  35.44  (   6.13   12.13   88.07 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     19     22     35     49     61     80     92    100    105    109    112    117    120    123    124    127    129    132    134 
GDT PERCENT_CA  10.20  12.93  14.97  23.81  33.33  41.50  54.42  62.59  68.03  71.43  74.15  76.19  79.59  81.63  83.67  84.35  86.39  87.76  89.80  91.16
GDT RMS_LOCAL    0.29   0.43   1.09   1.46   1.79   2.18   2.50   2.74   2.96   3.09   3.27   3.46   3.69   3.85   4.00   4.04   4.21   4.33   4.57   4.70
GDT RMS_ALL_CA  11.67  11.51  10.46  10.32  10.38  10.28  10.31  10.21  10.05  10.05  10.00   9.96   9.98   9.98  10.03  10.03  10.05   9.96   9.95   9.97

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.521
LGA    P       2      P       2          5.658
LGA    A       3      A       3          3.869
LGA    L       4      L       4          1.700
LGA    I       5      I       5          2.991
LGA    T       6      T       6          1.851
LGA    Y       7      Y       7          1.546
LGA    R       8      R       8          2.209
LGA    T       9      T       9          3.660
LGA    T      10      T      10          3.957
LGA    V      11      V      11          2.175
LGA    Q      12      Q      12          3.261
LGA    E      13      E      13          2.141
LGA    D      14      D      14          2.566
LGA    W      15      W      15          1.381
LGA    V      16      V      16          0.872
LGA    D      17      D      17          2.871
LGA    Y      18      Y      18          2.151
LGA    N      19      N      19          5.949
LGA    G      20      G      20          7.233
LGA    H      21      H      21          3.772
LGA    L      22      L      22          3.360
LGA    R      23      R      23          1.971
LGA    D      24      D      24          1.963
LGA    A      25      A      25          2.570
LGA    F      26      F      26          3.220
LGA    Y      27      Y      27          3.049
LGA    L      28      L      28          2.724
LGA    L      29      L      29          2.738
LGA    I      30      I      30          3.157
LGA    F      31      F      31          3.029
LGA    S      32      S      32          2.569
LGA    Y      33      Y      33          2.755
LGA    A      34      A      34          3.247
LGA    T      35      T      35          3.341
LGA    D      36      D      36          2.743
LGA    A      37      A      37          2.966
LGA    L      38      L      38          3.735
LGA    M      39      M      39          3.626
LGA    D      40      D      40          2.749
LGA    R      41      R      41          3.489
LGA    I      42      I      42          4.304
LGA    G      43      G      43          4.342
LGA    L      44      L      44          3.990
LGA    D      45      D      45          9.409
LGA    A      46      A      46         11.497
LGA    D      47      D      47         10.857
LGA    S      48      S      48         12.043
LGA    R      49      R      49         16.124
LGA    G      50      G      50         11.293
LGA    Q      51      Q      51         12.206
LGA    S      52      S      52         12.231
LGA    G      53      G      53         12.951
LGA    N      54      N      54         10.240
LGA    S      55      S      55          2.989
LGA    L      56      L      56          2.635
LGA    F      57      F      57          2.172
LGA    T      58      T      58          1.289
LGA    L      59      L      59          1.192
LGA    E      60      E      60          2.193
LGA    A      61      A      61          1.419
LGA    H      62      H      62          6.649
LGA    I      63      I      63          3.548
LGA    N      64      N      64          3.445
LGA    Y      65      Y      65          3.535
LGA    L      66      L      66          3.539
LGA    H      67      H      67          1.626
LGA    E      68      E      68          3.447
LGA    V      69      V      69          2.980
LGA    K      70      K      70          6.655
LGA    L      71      L      71          7.689
LGA    G      72      G      72          3.645
LGA    T      73      T      73          3.480
LGA    E      74      E      74          2.866
LGA    V      75      V      75          2.093
LGA    W      76      W      76          1.558
LGA    V      77      V      77          1.304
LGA    Q      78      Q      78          2.768
LGA    T      79      T      79          3.259
LGA    Q      80      Q      80          4.837
LGA    I      81      I      81          3.259
LGA    L      82      L      82          5.547
LGA    G      83      G      83          3.817
LGA    F      84      F      84          3.999
LGA    D      85      D      85          7.353
LGA    R      86      R      86          8.520
LGA    K      87      K      87          7.242
LGA    R      88      R      88          3.999
LGA    L      89      L      89          1.986
LGA    H      90      H      90          1.489
LGA    V      91      V      91          1.046
LGA    Y      92      Y      92          2.024
LGA    H      93      H      93          1.388
LGA    S      94      S      94          0.703
LGA    L      95      L      95          1.782
LGA    H      96      H      96          2.014
LGA    R      97      R      97          1.855
LGA    A      98      A      98          2.240
LGA    G      99      G      99          2.634
LGA    F     100      F     100          4.824
LGA    D     101      D     101          1.610
LGA    E     102      E     102          1.578
LGA    V     103      V     103          1.783
LGA    L     104      L     104          2.191
LGA    A     105      A     105          3.522
LGA    A     106      A     106          1.553
LGA    S     107      S     107          0.992
LGA    E     108      E     108          5.508
LGA    Q     109      Q     109          5.976
LGA    M     110      M     110          4.200
LGA    L     111      L     111          3.244
LGA    L     112      L     112          3.324
LGA    H     113      H     113          2.907
LGA    V     114      V     114          4.233
LGA    D     115      D     115          4.962
LGA    L     116      L     116          9.785
LGA    Q     120      Q     120         11.405
LGA    S     121      S     121          9.669
LGA    A     122      A     122         10.196
LGA    P     123      P     123          7.078
LGA    F     124      F     124          5.460
LGA    G     125      G     125          8.858
LGA    H     126      H     126          4.727
LGA    T     127      T     127          4.804
LGA    T     128      T     128          3.102
LGA    V     129      V     129          1.542
LGA    C     130      C     130          2.343
LGA    R     131      R     131          3.593
LGA    L     132      L     132          2.562
LGA    N     133      N     133          2.328
LGA    H     134      H     134          3.970
LGA    L     135      L     135          5.609
LGA    V     136      V     136          5.572
LGA    E     137      E     137          5.932
LGA    Q     138      Q     138          8.294
LGA    Q     139      Q     139          9.817
LGA    E     140      E     140         12.906
LGA    G     141      G     141         14.580
LGA    A     142      A     142         20.155
LGA    Q     143      Q     143         24.969
LGA    A     144      A     144         30.581
LGA    P     145      P     145         31.420
LGA    Q     146      Q     146         36.008
LGA    Y     147      Y     147         39.404
LGA    M     148      M     148         40.758
LGA    G     149      G     149         41.984
LGA    R     150      R     150         43.686

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  150  147    4.0     92    2.74    45.918    40.200     3.241

LGA_LOCAL      RMSD =  2.739  Number of atoms =   92  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.191  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  9.339  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.929089 * X  +  -0.304282 * Y  +  -0.210250 * Z  +  45.168049
  Y_new =   0.035018 * X  +  -0.638283 * Y  +   0.769005 * Z  +  11.205897
  Z_new =  -0.368194 * X  +   0.707112 * Y  +   0.603677 * Z  +   5.310497 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.864145   -2.277447  [ DEG:    49.5119   -130.4881 ]
  Theta =   0.377065    2.764527  [ DEG:    21.6043    158.3957 ]
  Phi   =   3.103920   -0.037673  [ DEG:   177.8415     -2.1585 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0364TS168_4-D1                               
REMARK     2: T0364_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0364TS168_4-D1.T0364_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  150  147   4.0   92   2.74  40.200     9.34
REMARK  ---------------------------------------------------------- 
MOLECULE T0364TS168_4-D1
PFRMAT TS
TARGET T0364
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      29.419  10.479  15.136  1.00 25.00           C
ATOM      2  CA  PRO     2      31.584  13.467  13.992  1.00 25.00           C
ATOM      3  CA  ALA     3      34.694  13.801  11.773  1.00 25.00           C
ATOM      4  CA  LEU     4      36.859  12.877   8.857  1.00 25.00           C
ATOM      5  CA  ILE     5      38.097  13.126   5.223  1.00 25.00           C
ATOM      6  CA  THR     6      38.768  11.133   2.054  1.00 25.00           C
ATOM      7  CA  TYR     7      40.396   9.822  -1.125  1.00 25.00           C
ATOM      8  CA  ARG     8      41.291   6.363  -2.251  1.00 25.00           C
ATOM      9  CA  THR     9      43.600   3.422  -2.849  1.00 25.00           C
ATOM     10  CA  THR    10      42.802   2.646  -6.515  1.00 25.00           C
ATOM     11  CA  VAL    11      43.425  -1.125  -6.469  1.00 25.00           C
ATOM     12  CA  GLN    12      42.124  -4.759  -6.522  1.00 25.00           C
ATOM     13  CA  GLU    13      43.722  -6.219  -9.659  1.00 25.00           C
ATOM     14  CA  ASP    14      47.009  -4.259  -9.780  1.00 25.00           C
ATOM     15  CA  TRP    15      47.847  -5.397  -6.221  1.00 25.00           C
ATOM     16  CA  VAL    16      47.139  -8.948  -5.050  1.00 25.00           C
ATOM     17  CA  ASP    17      49.774 -10.826  -7.007  1.00 25.00           C
ATOM     18  CA  TYR    18      50.112 -14.518  -7.922  1.00 25.00           C
ATOM     19  CA  ASN    19      51.564 -15.775  -4.656  1.00 25.00           C
ATOM     20  CA  GLY    20      49.030 -16.373  -1.861  1.00 25.00           C
ATOM     21  CA  HIS    21      47.639 -12.864  -1.091  1.00 25.00           C
ATOM     22  CA  LEU    22      45.374 -10.042   0.194  1.00 25.00           C
ATOM     23  CA  ARG    23      48.667  -8.382   1.170  1.00 25.00           C
ATOM     24  CA  ASP    24      51.442  -7.311   3.602  1.00 25.00           C
ATOM     25  CA  ALA    25      54.106  -4.788   2.502  1.00 25.00           C
ATOM     26  CA  PHE    26      52.020  -3.894  -0.583  1.00 25.00           C
ATOM     27  CA  TYR    27      48.927  -3.401   1.622  1.00 25.00           C
ATOM     28  CA  LEU    28      50.933  -1.140   3.973  1.00 25.00           C
ATOM     29  CA  LEU    29      52.176   0.908   0.985  1.00 25.00           C
ATOM     30  CA  ILE    30      48.585   1.262  -0.297  1.00 25.00           C
ATOM     31  CA  PHE    31      47.435   2.418   3.169  1.00 25.00           C
ATOM     32  CA  SER    32      50.272   4.989   3.280  1.00 25.00           C
ATOM     33  CA  TYR    33      49.282   6.267  -0.192  1.00 25.00           C
ATOM     34  CA  ALA    34      45.636   6.579   0.936  1.00 25.00           C
ATOM     35  CA  THR    35      46.739   8.518   4.048  1.00 25.00           C
ATOM     36  CA  ASP    36      48.849  10.859   1.872  1.00 25.00           C
ATOM     37  CA  ALA    37      45.859  11.433  -0.452  1.00 25.00           C
ATOM     38  CA  LEU    38      43.634  12.219   2.564  1.00 25.00           C
ATOM     39  CA  MET    39      46.243  14.699   3.873  1.00 25.00           C
ATOM     40  CA  ASP    40      46.408  16.378   0.435  1.00 25.00           C
ATOM     41  CA  ARG    41      42.588  16.642   0.353  1.00 25.00           C
ATOM     42  CA  ILE    42      42.595  18.197   3.852  1.00 25.00           C
ATOM     43  CA  GLY    43      45.995  19.890   4.067  1.00 25.00           C
ATOM     44  CA  LEU    44      49.527  18.709   3.260  1.00 25.00           C
ATOM     45  CA  ASP    45      49.589  17.137   6.693  1.00 25.00           C
ATOM     46  CA  ALA    46      52.714  18.619   8.174  1.00 25.00           C
ATOM     47  CA  ASP    47      53.470  21.615   5.910  1.00 25.00           C
ATOM     48  CA  SER    48      50.227  23.313   7.035  1.00 25.00           C
ATOM     49  CA  ARG    49      51.151  22.707  10.702  1.00 25.00           C
ATOM     50  CA  GLY    50      54.626  24.197  10.098  1.00 25.00           C
ATOM     51  CA  GLN    51      53.048  27.265   8.435  1.00 25.00           C
ATOM     52  CA  SER    52      54.511  27.016   4.947  1.00 25.00           C
ATOM     53  CA  GLY    53      57.985  26.372   6.263  1.00 25.00           C
ATOM     54  CA  ASN    54      59.013  22.778   7.159  1.00 25.00           C
ATOM     55  CA  SER    55      58.780  19.558   5.083  1.00 25.00           C
ATOM     56  CA  LEU    56      56.730  16.903   3.291  1.00 25.00           C
ATOM     57  CA  PHE    57      57.519  13.450   4.752  1.00 25.00           C
ATOM     58  CA  THR    58      57.258  10.842   7.519  1.00 25.00           C
ATOM     59  CA  LEU    59      58.652  10.322  10.989  1.00 25.00           C
ATOM     60  CA  GLU    60      55.856   7.896  12.060  1.00 25.00           C
ATOM     61  CA  ALA    61      53.821   4.913  10.885  1.00 25.00           C
ATOM     62  CA  HIS    62      53.788   3.241   7.465  1.00 25.00           C
ATOM     63  CA  ILE    63      51.762   0.268   8.849  1.00 25.00           C
ATOM     64  CA  ASN    64      49.830  -1.537  11.593  1.00 25.00           C
ATOM     65  CA  TYR    65      47.753  -2.957   8.764  1.00 25.00           C
ATOM     66  CA  LEU    66      45.109  -5.629   9.248  1.00 25.00           C
ATOM     67  CA  HIS    67      41.937  -7.010   7.695  1.00 25.00           C
ATOM     68  CA  GLU    68      39.965  -6.765   4.478  1.00 25.00           C
ATOM     69  CA  VAL    69      39.054  -5.057   1.193  1.00 25.00           C
ATOM     70  CA  LYS    70      35.367  -5.809   0.879  1.00 25.00           C
ATOM     71  CA  LEU    71      34.332  -5.395  -2.809  1.00 25.00           C
ATOM     72  CA  GLY    72      35.252  -3.676  -6.060  1.00 25.00           C
ATOM     73  CA  THR    73      37.026  -0.736  -4.337  1.00 25.00           C
ATOM     74  CA  GLU    74      35.958   1.850  -1.700  1.00 25.00           C
ATOM     75  CA  VAL    75      39.104   2.571   0.251  1.00 25.00           C
ATOM     76  CA  TRP    76      37.822   5.750   1.963  1.00 25.00           C
ATOM     77  CA  VAL    77      41.043   6.763   3.641  1.00 25.00           C
ATOM     78  CA  GLN    78      41.206   9.166   6.562  1.00 25.00           C
ATOM     79  CA  THR    79      44.134  11.354   7.672  1.00 25.00           C
ATOM     80  CA  GLN    80      43.283  14.793   9.140  1.00 25.00           C
ATOM     81  CA  ILE    81      44.897  16.789  11.982  1.00 25.00           C
ATOM     82  CA  LEU    82      42.304  17.088  14.754  1.00 25.00           C
ATOM     83  CA  GLY    83      43.658  15.227  17.803  1.00 25.00           C
ATOM     84  CA  PHE    84      47.187  16.456  18.773  1.00 25.00           C
ATOM     85  CA  ASP    85      47.880  17.512  22.379  1.00 25.00           C
ATOM     86  CA  ARG    86      51.663  17.710  21.869  1.00 25.00           C
ATOM     87  CA  LYS    87      52.448  16.753  18.273  1.00 25.00           C
ATOM     88  CA  ARG    88      51.425  18.905  15.308  1.00 25.00           C
ATOM     89  CA  LEU    89      49.527  16.047  13.737  1.00 25.00           C
ATOM     90  CA  HIS    90      48.405  12.657  14.915  1.00 25.00           C
ATOM     91  CA  VAL    91      46.454  10.543  12.353  1.00 25.00           C
ATOM     92  CA  TYR    92      43.581   8.490  13.652  1.00 25.00           C
ATOM     93  CA  HIS    93      43.220   6.361  10.527  1.00 25.00           C
ATOM     94  CA  SER    94      40.850   3.873   8.861  1.00 25.00           C
ATOM     95  CA  LEU    95      39.105   2.648   5.791  1.00 25.00           C
ATOM     96  CA  HIS    96      35.389   1.970   5.727  1.00 25.00           C
ATOM     97  CA  ARG    97      33.260  -0.577   3.915  1.00 25.00           C
ATOM     98  CA  ALA    98      29.723  -2.015   3.558  1.00 25.00           C
ATOM     99  CA  GLY    99      27.888  -4.004   6.214  1.00 25.00           C
ATOM    100  CA  PHE   100      27.926  -3.620   9.998  1.00 25.00           C
ATOM    101  CA  ASP   101      31.484  -2.892  10.926  1.00 25.00           C
ATOM    102  CA  GLU   102      35.053  -3.798  10.184  1.00 25.00           C
ATOM    103  CA  VAL   103      37.609  -1.708   8.299  1.00 25.00           C
ATOM    104  CA  LEU   104      41.080  -2.034   6.786  1.00 25.00           C
ATOM    105  CA  ALA   105      44.270  -0.013   6.254  1.00 25.00           C
ATOM    106  CA  ALA   106      45.051   1.196   9.713  1.00 25.00           C
ATOM    107  CA  SER   107      47.926   3.462  10.711  1.00 25.00           C
ATOM    108  CA  GLU   108      48.842   6.449   8.477  1.00 25.00           C
ATOM    109  CA  GLN   109      51.037   9.085   6.732  1.00 25.00           C
ATOM    110  CA  MET   110      51.038  10.635  10.204  1.00 25.00           C
ATOM    111  CA  LEU   111      52.653  13.571   8.413  1.00 25.00           C
ATOM    112  CA  LEU   112      54.378  14.759  11.552  1.00 25.00           C
ATOM    113  CA  HIS   113      57.287  15.925   9.411  1.00 25.00           C
ATOM    114  CA  VAL   114      58.570  19.244  10.749  1.00 25.00           C
ATOM    115  CA  ASP   115      62.118  19.347   9.420  1.00 25.00           C
ATOM    116  CA  LEU   116      65.061  20.902  11.241  1.00 25.00           C
ATOM    117  CA  ALA   117      67.065  23.110   8.809  1.00 25.00           C
ATOM    118  CA  GLY   118      69.560  24.144  11.485  1.00 25.00           C
ATOM    119  CA  PRO   119      67.689  26.788  13.499  1.00 25.00           C
ATOM    120  CA  GLN   120      65.163  28.306  15.873  1.00 25.00           C
ATOM    121  CA  SER   121      62.911  26.064  18.012  1.00 25.00           C
ATOM    122  CA  ALA   122      59.446  26.501  19.519  1.00 25.00           C
ATOM    123  CA  PRO   123      55.750  26.063  18.781  1.00 25.00           C
ATOM    124  CA  PHE   124      53.238  24.726  16.352  1.00 25.00           C
ATOM    125  CA  GLY   125      50.412  26.178  18.419  1.00 25.00           C
ATOM    126  CA  HIS   126      50.208  29.218  16.201  1.00 25.00           C
ATOM    127  CA  THR   127      48.887  30.747  12.949  1.00 25.00           C
ATOM    128  CA  THR   128      49.074  27.327  11.236  1.00 25.00           C
ATOM    129  CA  VAL   129      47.172  25.734  14.155  1.00 25.00           C
ATOM    130  CA  CYS   130      44.489  28.457  13.924  1.00 25.00           C
ATOM    131  CA  ARG   131      44.165  27.853  10.156  1.00 25.00           C
ATOM    132  CA  LEU   132      43.803  24.089  10.765  1.00 25.00           C
ATOM    133  CA  ASN   133      41.096  24.750  13.392  1.00 25.00           C
ATOM    134  CA  HIS   134      39.240  27.033  10.941  1.00 25.00           C
ATOM    135  CA  LEU   135      39.435  24.330   8.237  1.00 25.00           C
ATOM    136  CA  VAL   136      38.065  21.735  10.697  1.00 25.00           C
ATOM    137  CA  GLU   137      35.188  24.089  11.617  1.00 25.00           C
ATOM    138  CA  GLN   138      34.400  24.616   7.907  1.00 25.00           C
ATOM    139  CA  GLN   139      34.392  20.827   7.346  1.00 25.00           C
ATOM    140  CA  GLU   140      30.567  21.283   7.022  1.00 25.00           C
ATOM    141  CA  GLY   141      27.917  23.879   7.705  1.00 25.00           C
ATOM    142  CA  ALA   142      27.879  26.936   5.538  1.00 25.00           C
ATOM    143  CA  GLN   143      24.375  26.066   4.206  1.00 25.00           C
ATOM    144  CA  ALA   144      24.963  28.295   1.163  1.00 25.00           C
ATOM    145  CA  PRO   145      27.043  26.397  -1.456  1.00 25.00           C
ATOM    146  CA  GLN   146      27.782  25.545  -5.044  1.00 25.00           C
ATOM    147  CA  TYR   147      26.795  24.648  -8.557  1.00 25.00           C
ATOM    148  CA  MET   148      24.735  21.617  -9.720  1.00 25.00           C
ATOM    149  CA  GLY   149      27.000  18.574 -10.100  1.00 25.00           C
ATOM    150  CA  ARG   150      29.436  21.021 -11.698  1.00 25.00           C
TER
END
