
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  150 (  150),  selected  147 , name T0364TS168_5-D1
# Molecule2: number of CA atoms  147 ( 1178),  selected  147 , name T0364_D1.pdb
# PARAMETERS: T0364TS168_5-D1.T0364_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   135         1 - 138         4.95    11.23
  LCS_AVERAGE:     86.58

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        11 - 42          1.93    12.53
  LCS_AVERAGE:     12.27

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        21 - 42          0.93    12.40
  LCS_AVERAGE:      5.97

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3    7  135     3    4   14   28   35   53   71   84   96  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     P       2     P       2      3    8  135     3    8   15   26   37   50   65   87   98  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A       3     A       3      3    9  135     3    7   15   30   40   66   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L       4     L       4      4    9  135     3   13   22   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     I       5     I       5      4    9  135     0    7   17   30   42   74   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T       6     T       6      4    9  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Y       7     Y       7      4    9  135     3   11   22   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R       8     R       8      4   11  135     3    6   14   26   48   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T       9     T       9      4   11  135     3    4    8   20   37   62   82   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T      10     T      10      4   11  135     3    4   13   29   48   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V      11     V      11      4   32  135     4   10   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Q      12     Q      12      4   32  135    10   20   21   32   50   66   83   88   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     E      13     E      13      4   32  135     5   13   21   33   54   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      14     D      14      4   32  135     4   13   21   33   50   74   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     W      15     W      15      5   32  135     4   14   22   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V      16     V      16      5   32  135     3    4   14   31   44   75   82   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      17     D      17      5   32  135     3    6   14   27   41   60   82   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Y      18     Y      18      5   32  135     4    7   21   31   49   75   82   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     N      19     N      19      5   32  135     3    5   12   27   35   42   60   81   89   98  106  111  115  118  121  123  126  128  129  130 
LCS_GDT     G      20     G      20      5   32  135     3    4    8   12   25   40   49   60   88   94  101  107  114  118  121  123  126  128  129  130 
LCS_GDT     H      21     H      21     22   32  135     4   18   23   31   49   75   82   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      22     L      22     22   32  135     3   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R      23     R      23     22   32  135     3    7   20   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      24     D      24     22   32  135     4   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A      25     A      25     22   32  135    16   20   23   34   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     F      26     F      26     22   32  135    11   20   23   36   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Y      27     Y      27     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      28     L      28     22   32  135    16   20   23   34   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      29     L      29     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     I      30     I      30     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     F      31     F      31     22   32  135    16   20   23   36   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     S      32     S      32     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Y      33     Y      33     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A      34     A      34     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T      35     T      35     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      36     D      36     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A      37     A      37     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      38     L      38     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     M      39     M      39     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      40     D      40     22   32  135    16   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R      41     R      41     22   32  135    15   20   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     I      42     I      42     22   32  135    16   20   23   36   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     G      43     G      43     20   31  135     3    5    9   17   28   47   66   86   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      44     L      44      5   30  135     3    5    9   14   21   33   54   74   91  104  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      45     D      45      4    5  135     3    4    4    5    5   12   17   21   27   33   51   86  102  112  117  120  123  126  129  130 
LCS_GDT     A      46     A      46      4    5  135     3    4    4    5   13   19   22   29   35   45   70   84  100  112  119  122  123  126  129  130 
LCS_GDT     D      47     D      47      4    5  135     3    3    4    5    5   12   17   21   23   27   38   63   72   78   93  109  120  123  128  130 
LCS_GDT     S      48     S      48      4    5  135     4    4    4    6   13   19   26   37   52   80   92  104  112  118  121  123  125  128  129  130 
LCS_GDT     R      49     R      49      4    5  135     4    4    4    5    5    7    8    8   18   42   48   51   67   83   97  111  118  125  126  129 
LCS_GDT     G      50     G      50      4    5  135     6    6    6    8   10   12   24   33   41   50   55   68   82  104  109  118  123  126  128  130 
LCS_GDT     Q      51     Q      51      4    5  135     4    4    4    8   17   20   27   35   50   68   74   86  101  112  120  123  126  128  129  130 
LCS_GDT     S      52     S      52      3    5  135     3    3    4   13   16   21   23   28   31   38   44   49   54   63   75   87   95  113  122  128 
LCS_GDT     G      53     G      53      3    5  135     3    6   10   17   19   21   24   30   34   43   46   53   57   71   83  103  114  124  129  130 
LCS_GDT     N      54     N      54      3    5  135     3    3    6   15   23   32   44   56   71   89  105  111  116  118  121  123  126  128  129  130 
LCS_GDT     S      55     S      55      5   13  135     4   10   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      56     L      56      5   13  135     5   13   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     F      57     F      57      5   13  135     5   18   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T      58     T      58      5   13  135     4   12   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      59     L      59      5   13  135     5   18   23   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     E      60     E      60      5   13  135     6    7   22   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A      61     A      61      4   13  135     4    6   20   30   50   75   83   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H      62     H      62      4   13  135     4    7   16   30   35   46   63   80   91  100  106  113  116  118  121  123  126  128  129  130 
LCS_GDT     I      63     I      63      5   13  135     6   11   20   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     N      64     N      64      5   13  135     6    9   19   30   45   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Y      65     Y      65      5   13  135     6    9   19   30   45   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      66     L      66      5   13  135     6    9   19   30   48   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H      67     H      67      6   13  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     E      68     E      68      6   13  135     3    6   11   20   31   55   79   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V      69     V      69      6   13  135     3    7   11   23   40   67   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     K      70     K      70      6   13  135     3    7   11   19   28   47   69   89   97  104  108  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      71     L      71      6   13  135     3    7   10   19   27   43   53   81   91  102  108  112  116  118  121  123  126  128  129  130 
LCS_GDT     G      72     G      72      6   13  135     3    6   19   30   41   56   83   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T      73     T      73      4   13  135     3    6   13   26   41   50   70   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     E      74     E      74      6   13  135     1    5   22   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V      75     V      75      6   13  135     3    5   13   26   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     W      76     W      76      6   13  135     3    5   21   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V      77     V      77      6   13  135     3   10   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Q      78     Q      78      6   13  135     3    5   10   21   41   60   77   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     T      79     T      79      6   13  135     3    6   17   30   47   74   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Q      80     Q      80      4   13  135     3    6   17   33   50   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     I      81     I      81      5   13  135     3    9   20   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      82     L      82      5   13  135     3    9   18   33   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     G      83     G      83      5   13  135     3    6   20   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     F      84     F      84      8   13  135     3    6   17   27   34   55   77   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D      85     D      85      8   13  135     3    6    8   18   28   43   60   78   95  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R      86     R      86      8   10  135     3    6    8   18   27   40   60   73   95  103  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     K      87     K      87      8   10  135     3    4    8   14   26   40   58   84   98  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R      88     R      88      8   22  135     3   10   20   36   55   75   82   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      89     L      89      8   22  135     3   10   17   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H      90     H      90      8   22  135     3    7   12   24   45   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V      91     V      91      8   22  135     3    7   15   27   46   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Y      92     Y      92      3   22  135     3   10   21   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H      93     H      93      6   22  135     3    5    8   28   45   67   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     S      94     S      94      6   22  135     3    7   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L      95     L      95      6   22  135     3    7   19   33   50   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H      96     H      96      6   22  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R      97     R      97      6   22  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A      98     A      98      6   22  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     G      99     G      99      6   22  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     F     100     F     100      4   22  135     3    4    4   18   40   66   83   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D     101     D     101      4   22  135     5   13   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     E     102     E     102      4   22  135     5   10   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V     103     V     103      4   22  135     3   10   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L     104     L     104      4   22  135     3    8   19   33   54   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A     105     A     105      5   22  135     4    6   14   24   35   51   77   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     A     106     A     106      5   22  135     4    6   17   30   46   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     S     107     S     107      5   22  135     4    6   19   30   44   74   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     E     108     E     108      5   22  135     4    7   20   36   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Q     109     Q     109      5   22  135     3    7   20   30   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     M     110     M     110      4   22  135     3    4    8   16   26   41   55   76   89   97  104  110  114  117  121  123  126  128  129  130 
LCS_GDT     L     111     L     111      4   18  135     3   10   21   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L     112     L     112      4   11  135     3    4   10   23   39   59   81   90   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H     113     H     113      4    8  135     3    7   22   28   46   70   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V     114     V     114      4    8  135     3   10   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     D     115     D     115      4    8  135     2    7   22   36   54   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L     116     L     116      3    6  135     1    2   11   18   30   53   76   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     Q     120     Q     120      3    7  135     3    3    3    6   11   14   17   19   22   35   65   79   94  108  116  123  126  128  129  130 
LCS_GDT     S     121     S     121      3    8  135     3    3    3    6    9   12   14   17   19   20   28   39   81   91   99  119  126  128  129  130 
LCS_GDT     A     122     A     122      3    8  135     3    3    5    8   11   14   17   19   40   53   71  100  112  117  121  123  126  128  129  130 
LCS_GDT     P     123     P     123      3   18  135     4    6   14   26   38   56   78   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     F     124     F     124      9   18  135     3    7   14   22   37   55   77   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     G     125     G     125     16   18  135     3   11   15   16   20   30   46   59   79   91  106  113  116  118  121  123  126  128  129  130 
LCS_GDT     H     126     H     126     16   18  135    12   14   15   17   21   27   46   67   82   93  106  113  116  118  121  123  126  128  129  130 
LCS_GDT     T     127     T     127     16   18  135    12   14   15   19   27   38   53   72   87  102  107  113  116  118  121  123  126  128  129  130 
LCS_GDT     T     128     T     128     16   18  135    12   14   15   21   34   52   71   87   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     V     129     V     129     16   18  135    12   14   15   25   37   57   77   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     C     130     C     130     16   18  135    12   14   15   28   41   58   77   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     R     131     R     131     16   18  135    12   14   15   26   40   50   75   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     L     132     L     132     16   18  135    12   14   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     N     133     N     133     16   18  135    12   14   22   37   55   75   83   92   99  105  109  113  116  118  121  123  126  128  129  130 
LCS_GDT     H     134     H     134     16   18  135    12   14   15   30   40   70   83   92   99  105  109  112  116  118  121  123  126  128  129  130 
LCS_GDT     L     135     L     135     16   18  135    12   14   15   16   20   38   66   87   93  100  107  111  115  117  121  123  126  128  129  130 
LCS_GDT     V     136     V     136     16   18  135    12   14   15   17   33   51   69   87   93  100  107  111  114  117  121  123  126  128  129  130 
LCS_GDT     E     137     E     137     16   18  135    12   14   15   17   37   51   71   87   93  100  107  111  114  117  121  123  126  128  129  130 
LCS_GDT     Q     138     Q     138     16   18  135    10   14   15   17   20   23   37   52   69   83   95  106  111  114  118  122  124  128  129  129 
LCS_GDT     Q     139     Q     139     16   18   87     5   14   15   17   20   21   24   40   55   73   85   97  101  109  115  120  122  125  128  129 
LCS_GDT     E     140     E     140     16   18   86     3    6   15   17   20   21   24   29   41   63   70   85   94  104  110  117  121  124  126  129 
LCS_GDT     G     141     G     141     16   18   33     3    8   11   17   19   21   23   27   33   36   46   61   76   89   98  107  114  120  123  127 
LCS_GDT     A     142     A     142      4    6   31     3    4    5    8   10   13   18   19   21   29   34   36   38   43   45   50   52   72   85  102 
LCS_GDT     Q     143     Q     143      4    8   31     3    4    5    7    9   10   14   19   21   24   26   27   29   29   35   35   40   41   43   48 
LCS_GDT     A     144     A     144      4    8   31     3    4    5    6    8   10   13   16   20   24   26   26   29   29   29   30   31   33   35   37 
LCS_GDT     P     145     P     145      4    8   31     3    4    5    6    9   10   14   19   21   24   26   27   29   29   29   30   31   33   34   36 
LCS_GDT     Q     146     Q     146      4    8   31     3    4    5    7    9   10   14   19   21   24   26   27   29   29   29   30   31   33   34   36 
LCS_GDT     Y     147     Y     147      4    8   31     3    4    5    6    7    7    8    8   21   24   26   27   29   29   29   30   31   33   34   37 
LCS_GDT     M     148     M     148      3    8   31     3    4    5    7    9   10   14   19   21   24   26   27   29   29   29   30   31   31   32   33 
LCS_GDT     G     149     G     149      3    8   31     0    4    5    7    9   10   14   17   21   24   26   27   29   29   29   29   31   31   32   33 
LCS_GDT     R     150     R     150      3    8   31     0    3    4    6    6    8   12   19   21   24   26   27   29   29   29   30   31   33   34   36 
LCS_AVERAGE  LCS_A:  34.94  (   5.97   12.27   86.58 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     20     23     37     55     75     83     92     99    105    109    113    116    118    121    123    126    128    129    130 
GDT PERCENT_CA  10.88  13.61  15.65  25.17  37.41  51.02  56.46  62.59  67.35  71.43  74.15  76.87  78.91  80.27  82.31  83.67  85.71  87.07  87.76  88.44
GDT RMS_LOCAL    0.33   0.45   0.77   1.64   1.89   2.22   2.43   2.73   2.85   3.04   3.20   3.47   3.57   3.68   3.84   3.91   4.17   4.32   4.37   4.47
GDT RMS_ALL_CA  12.75  12.82  12.25  11.31  11.25  11.22  11.18  11.16  11.19  11.23  11.25  11.35  11.33  11.35  11.33  11.20  11.18  11.14  11.24  11.25

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.786
LGA    P       2      P       2          5.682
LGA    A       3      A       3          3.692
LGA    L       4      L       4          1.468
LGA    I       5      I       5          2.434
LGA    T       6      T       6          1.097
LGA    Y       7      Y       7          2.137
LGA    R       8      R       8          2.192
LGA    T       9      T       9          3.199
LGA    T      10      T      10          2.144
LGA    V      11      V      11          1.138
LGA    Q      12      Q      12          5.020
LGA    E      13      E      13          2.825
LGA    D      14      D      14          3.139
LGA    W      15      W      15          2.778
LGA    V      16      V      16          3.263
LGA    D      17      D      17          3.894
LGA    Y      18      Y      18          3.324
LGA    N      19      N      19          6.352
LGA    G      20      G      20          7.339
LGA    H      21      H      21          4.124
LGA    L      22      L      22          2.577
LGA    R      23      R      23          3.185
LGA    D      24      D      24          2.424
LGA    A      25      A      25          3.088
LGA    F      26      F      26          3.033
LGA    Y      27      Y      27          2.759
LGA    L      28      L      28          3.189
LGA    L      29      L      29          2.825
LGA    I      30      I      30          2.834
LGA    F      31      F      31          2.866
LGA    S      32      S      32          2.710
LGA    Y      33      Y      33          3.180
LGA    A      34      A      34          2.885
LGA    T      35      T      35          2.702
LGA    D      36      D      36          3.261
LGA    A      37      A      37          3.423
LGA    L      38      L      38          2.851
LGA    M      39      M      39          3.253
LGA    D      40      D      40          3.593
LGA    R      41      R      41          3.307
LGA    I      42      I      42          3.282
LGA    G      43      G      43          4.391
LGA    L      44      L      44          5.312
LGA    D      45      D      45         10.103
LGA    A      46      A      46         10.515
LGA    D      47      D      47         12.369
LGA    S      48      S      48          9.094
LGA    R      49      R      49         13.708
LGA    G      50      G      50         12.482
LGA    Q      51      Q      51         10.552
LGA    S      52      S      52         12.984
LGA    G      53      G      53         11.539
LGA    N      54      N      54          7.307
LGA    S      55      S      55          1.830
LGA    L      56      L      56          2.152
LGA    F      57      F      57          3.614
LGA    T      58      T      58          2.802
LGA    L      59      L      59          3.058
LGA    E      60      E      60          3.178
LGA    A      61      A      61          4.518
LGA    H      62      H      62          6.594
LGA    I      63      I      63          3.104
LGA    N      64      N      64          3.917
LGA    Y      65      Y      65          3.213
LGA    L      66      L      66          3.029
LGA    H      67      H      67          0.659
LGA    E      68      E      68          4.624
LGA    V      69      V      69          3.995
LGA    K      70      K      70          6.056
LGA    L      71      L      71          7.162
LGA    G      72      G      72          4.519
LGA    T      73      T      73          5.064
LGA    E      74      E      74          2.051
LGA    V      75      V      75          2.378
LGA    W      76      W      76          1.698
LGA    V      77      V      77          1.045
LGA    Q      78      Q      78          3.988
LGA    T      79      T      79          3.150
LGA    Q      80      Q      80          3.062
LGA    I      81      I      81          3.502
LGA    L      82      L      82          3.616
LGA    G      83      G      83          0.894
LGA    F      84      F      84          3.942
LGA    D      85      D      85          5.810
LGA    R      86      R      86          6.053
LGA    K      87      K      87          5.071
LGA    R      88      R      88          1.860
LGA    L      89      L      89          1.847
LGA    H      90      H      90          3.573
LGA    V      91      V      91          3.832
LGA    Y      92      Y      92          1.813
LGA    H      93      H      93          2.982
LGA    S      94      S      94          1.536
LGA    L      95      L      95          2.147
LGA    H      96      H      96          0.855
LGA    R      97      R      97          1.908
LGA    A      98      A      98          2.583
LGA    G      99      G      99          3.198
LGA    F     100      F     100          4.939
LGA    D     101      D     101          2.389
LGA    E     102      E     102          1.142
LGA    V     103      V     103          1.600
LGA    L     104      L     104          2.503
LGA    A     105      A     105          4.192
LGA    A     106      A     106          3.269
LGA    S     107      S     107          3.666
LGA    E     108      E     108          2.530
LGA    Q     109      Q     109          3.409
LGA    M     110      M     110          7.095
LGA    L     111      L     111          1.734
LGA    L     112      L     112          4.365
LGA    H     113      H     113          2.501
LGA    V     114      V     114          1.197
LGA    D     115      D     115          1.067
LGA    L     116      L     116          3.673
LGA    Q     120      Q     120          9.818
LGA    S     121      S     121         10.384
LGA    A     122      A     122          8.487
LGA    P     123      P     123          2.963
LGA    F     124      F     124          3.594
LGA    G     125      G     125          8.340
LGA    H     126      H     126          8.605
LGA    T     127      T     127          7.599
LGA    T     128      T     128          4.657
LGA    V     129      V     129          3.668
LGA    C     130      C     130          3.516
LGA    R     131      R     131          3.649
LGA    L     132      L     132          1.558
LGA    N     133      N     133          1.979
LGA    H     134      H     134          3.609
LGA    L     135      L     135          6.155
LGA    V     136      V     136          6.748
LGA    E     137      E     137          7.022
LGA    Q     138      Q     138         10.017
LGA    Q     139      Q     139         12.400
LGA    E     140      E     140         15.225
LGA    G     141      G     141         18.228
LGA    A     142      A     142         22.816
LGA    Q     143      Q     143         30.034
LGA    A     144      A     144         34.303
LGA    P     145      P     145         37.441
LGA    Q     146      Q     146         41.481
LGA    Y     147      Y     147         42.219
LGA    M     148      M     148         43.254
LGA    G     149      G     149         47.044
LGA    R     150      R     150         47.566

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  150  147    4.0     92    2.73    46.259    41.273     3.254

LGA_LOCAL      RMSD =  2.727  Number of atoms =   92  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 11.062  Number of atoms =  147 
Std_ALL_ATOMS  RMSD = 10.501  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.846884 * X  +  -0.138882 * Y  +   0.513322 * Z  +  45.676239
  Y_new =   0.503292 * X  +   0.102363 * Y  +   0.858032 * Z  +  11.703172
  Z_new =  -0.171710 * X  +   0.985004 * Y  +  -0.016791 * Z  +   4.708082 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.587842   -1.553751  [ DEG:    90.9766    -89.0234 ]
  Theta =   0.172566    2.969027  [ DEG:     9.8873    170.1127 ]
  Phi   =   2.605384   -0.536209  [ DEG:   149.2775    -30.7225 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0364TS168_5-D1                               
REMARK     2: T0364_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0364TS168_5-D1.T0364_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  150  147   4.0   92   2.73  41.273    10.50
REMARK  ---------------------------------------------------------- 
MOLECULE T0364TS168_5-D1
PFRMAT TS
TARGET T0364
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      29.523  10.955  15.887  1.00 25.00           C
ATOM      2  CA  PRO     2      31.399  13.623  14.030  1.00 25.00           C
ATOM      3  CA  ALA     3      34.369  13.773  11.660  1.00 25.00           C
ATOM      4  CA  LEU     4      36.236  13.550   8.394  1.00 25.00           C
ATOM      5  CA  ILE     5      37.569  12.773   4.936  1.00 25.00           C
ATOM      6  CA  THR     6      39.587  11.463   2.026  1.00 25.00           C
ATOM      7  CA  TYR     7      38.947   8.799  -0.663  1.00 25.00           C
ATOM      8  CA  ARG     8      41.248   5.990  -1.969  1.00 25.00           C
ATOM      9  CA  THR     9      43.407   3.278  -3.630  1.00 25.00           C
ATOM     10  CA  THR    10      41.573   0.205  -5.002  1.00 25.00           C
ATOM     11  CA  VAL    11      42.552  -3.432  -4.657  1.00 25.00           C
ATOM     12  CA  GLN    12      41.777  -6.870  -6.108  1.00 25.00           C
ATOM     13  CA  GLU    13      43.157  -7.188  -9.665  1.00 25.00           C
ATOM     14  CA  ASP    14      46.311  -5.019  -9.781  1.00 25.00           C
ATOM     15  CA  TRP    15      47.741  -6.895  -6.763  1.00 25.00           C
ATOM     16  CA  VAL    16      50.624  -9.082  -5.606  1.00 25.00           C
ATOM     17  CA  ASP    17      52.619 -12.289  -6.306  1.00 25.00           C
ATOM     18  CA  TYR    18      51.653 -15.768  -7.548  1.00 25.00           C
ATOM     19  CA  ASN    19      51.290 -18.289  -4.727  1.00 25.00           C
ATOM     20  CA  GLY    20      49.839 -15.810  -2.307  1.00 25.00           C
ATOM     21  CA  HIS    21      48.204 -12.679  -0.998  1.00 25.00           C
ATOM     22  CA  LEU    22      47.180  -9.116  -0.135  1.00 25.00           C
ATOM     23  CA  ARG    23      49.709  -8.980   2.705  1.00 25.00           C
ATOM     24  CA  ASP    24      52.643  -6.765   3.473  1.00 25.00           C
ATOM     25  CA  ALA    25      53.605  -4.926   0.254  1.00 25.00           C
ATOM     26  CA  PHE    26      49.905  -4.550  -0.664  1.00 25.00           C
ATOM     27  CA  TYR    27      49.153  -3.167   2.827  1.00 25.00           C
ATOM     28  CA  LEU    28      52.038  -0.671   2.486  1.00 25.00           C
ATOM     29  CA  LEU    29      50.712   0.431  -0.933  1.00 25.00           C
ATOM     30  CA  ILE    30      47.211   0.904   0.548  1.00 25.00           C
ATOM     31  CA  PHE    31      48.678   2.990   3.407  1.00 25.00           C
ATOM     32  CA  SER    32      50.592   5.144   0.886  1.00 25.00           C
ATOM     33  CA  TYR    33      47.386   5.663  -1.144  1.00 25.00           C
ATOM     34  CA  ALA    34      45.508   6.679   2.036  1.00 25.00           C
ATOM     35  CA  THR    35      48.291   9.161   2.915  1.00 25.00           C
ATOM     36  CA  ASP    36      48.125  10.634  -0.617  1.00 25.00           C
ATOM     37  CA  ALA    37      44.325  10.994  -0.315  1.00 25.00           C
ATOM     38  CA  LEU    38      44.734  12.748   3.065  1.00 25.00           C
ATOM     39  CA  MET    39      47.317  15.130   1.543  1.00 25.00           C
ATOM     40  CA  ASP    40      44.935  15.901  -1.356  1.00 25.00           C
ATOM     41  CA  ARG    41      42.103  16.603   1.127  1.00 25.00           C
ATOM     42  CA  ILE    42      44.393  18.941   3.116  1.00 25.00           C
ATOM     43  CA  GLY    43      48.156  19.309   2.418  1.00 25.00           C
ATOM     44  CA  LEU    44      51.191  17.480   3.870  1.00 25.00           C
ATOM     45  CA  ASP    45      48.993  16.675   6.923  1.00 25.00           C
ATOM     46  CA  ALA    46      48.623  20.290   7.948  1.00 25.00           C
ATOM     47  CA  ASP    47      52.006  22.078   7.816  1.00 25.00           C
ATOM     48  CA  SER    48      51.333  23.140   4.199  1.00 25.00           C
ATOM     49  CA  ARG    49      47.886  24.471   5.206  1.00 25.00           C
ATOM     50  CA  GLY    50      49.459  26.434   8.093  1.00 25.00           C
ATOM     51  CA  GLN    51      52.063  27.909   5.703  1.00 25.00           C
ATOM     52  CA  SER    52      55.815  27.044   5.454  1.00 25.00           C
ATOM     53  CA  GLY    53      55.537  26.763   1.639  1.00 25.00           C
ATOM     54  CA  ASN    54      56.065  23.098   2.216  1.00 25.00           C
ATOM     55  CA  SER    55      56.043  19.268   1.864  1.00 25.00           C
ATOM     56  CA  LEU    56      55.897  15.769   3.345  1.00 25.00           C
ATOM     57  CA  PHE    57      58.503  13.032   2.904  1.00 25.00           C
ATOM     58  CA  THR    58      57.230  11.709   6.170  1.00 25.00           C
ATOM     59  CA  LEU    59      59.619  10.047   8.591  1.00 25.00           C
ATOM     60  CA  GLU    60      56.975   8.919  11.122  1.00 25.00           C
ATOM     61  CA  ALA    61      55.618   6.417   8.573  1.00 25.00           C
ATOM     62  CA  HIS    62      52.940   3.825   7.565  1.00 25.00           C
ATOM     63  CA  ILE    63      51.051   1.441   9.863  1.00 25.00           C
ATOM     64  CA  ASN    64      49.626  -2.088   9.783  1.00 25.00           C
ATOM     65  CA  TYR    65      47.132  -3.817   7.526  1.00 25.00           C
ATOM     66  CA  LEU    66      44.438  -6.160   8.881  1.00 25.00           C
ATOM     67  CA  HIS    67      41.300  -7.712   7.431  1.00 25.00           C
ATOM     68  CA  GLU    68      38.050  -9.226   6.111  1.00 25.00           C
ATOM     69  CA  VAL    69      37.805  -6.644   3.264  1.00 25.00           C
ATOM     70  CA  LYS    70      35.216  -7.919   0.733  1.00 25.00           C
ATOM     71  CA  LEU    71      34.888  -5.983  -2.536  1.00 25.00           C
ATOM     72  CA  GLY    72      34.639  -3.372  -5.345  1.00 25.00           C
ATOM     73  CA  THR    73      33.311  -1.206  -2.514  1.00 25.00           C
ATOM     74  CA  GLU    74      36.933  -0.658  -1.461  1.00 25.00           C
ATOM     75  CA  VAL    75      40.231   0.685  -0.207  1.00 25.00           C
ATOM     76  CA  TRP    76      39.498   3.529   2.144  1.00 25.00           C
ATOM     77  CA  VAL    77      40.609   6.769   3.768  1.00 25.00           C
ATOM     78  CA  GLN    78      42.410   9.244   5.970  1.00 25.00           C
ATOM     79  CA  THR    79      41.901  12.760   7.439  1.00 25.00           C
ATOM     80  CA  GLN    80      41.272  14.293  10.901  1.00 25.00           C
ATOM     81  CA  ILE    81      44.522  16.269  10.951  1.00 25.00           C
ATOM     82  CA  LEU    82      44.966  15.591  14.696  1.00 25.00           C
ATOM     83  CA  GLY    83      46.548  15.791  18.158  1.00 25.00           C
ATOM     84  CA  PHE    84      49.987  14.340  17.593  1.00 25.00           C
ATOM     85  CA  ASP    85      53.009  15.007  19.889  1.00 25.00           C
ATOM     86  CA  ARG    86      54.079  18.638  20.183  1.00 25.00           C
ATOM     87  CA  LYS    87      52.597  19.512  16.786  1.00 25.00           C
ATOM     88  CA  ARG    88      53.089  17.647  13.448  1.00 25.00           C
ATOM     89  CA  LEU    89      49.710  16.174  12.480  1.00 25.00           C
ATOM     90  CA  HIS    90      48.269  12.744  11.777  1.00 25.00           C
ATOM     91  CA  VAL    91      46.235  11.071   9.051  1.00 25.00           C
ATOM     92  CA  TYR    92      44.259   9.046  11.573  1.00 25.00           C
ATOM     93  CA  HIS    93      41.262   7.093  10.345  1.00 25.00           C
ATOM     94  CA  SER    94      41.692   3.312  10.589  1.00 25.00           C
ATOM     95  CA  LEU    95      39.961   3.167   7.235  1.00 25.00           C
ATOM     96  CA  HIS    96      37.178   0.876   5.876  1.00 25.00           C
ATOM     97  CA  ARG    97      34.329  -1.167   4.435  1.00 25.00           C
ATOM     98  CA  ALA    98      30.534  -1.759   4.372  1.00 25.00           C
ATOM     99  CA  GLY    99      28.622  -3.950   6.888  1.00 25.00           C
ATOM    100  CA  PHE   100      28.685  -3.127  10.567  1.00 25.00           C
ATOM    101  CA  ASP   101      31.879  -1.249  11.544  1.00 25.00           C
ATOM    102  CA  GLU   102      35.427  -2.526  11.501  1.00 25.00           C
ATOM    103  CA  VAL   103      39.056  -2.400  10.428  1.00 25.00           C
ATOM    104  CA  LEU   104      41.385  -1.683   7.486  1.00 25.00           C
ATOM    105  CA  ALA   105      44.156  -0.418   5.153  1.00 25.00           C
ATOM    106  CA  ALA   106      45.816   1.281   8.157  1.00 25.00           C
ATOM    107  CA  SER   107      47.215   4.821   8.208  1.00 25.00           C
ATOM    108  CA  GLU   108      48.854   6.029  11.440  1.00 25.00           C
ATOM    109  CA  GLN   109      50.780   8.619   9.321  1.00 25.00           C
ATOM    110  CA  MET   110      51.772  11.168   6.655  1.00 25.00           C
ATOM    111  CA  LEU   111      53.641  13.005   9.437  1.00 25.00           C
ATOM    112  CA  LEU   112      53.849  16.701   8.562  1.00 25.00           C
ATOM    113  CA  HIS   113      57.598  16.365   8.014  1.00 25.00           C
ATOM    114  CA  VAL   114      59.508  19.149   6.330  1.00 25.00           C
ATOM    115  CA  ASP   115      61.979  21.512   4.764  1.00 25.00           C
ATOM    116  CA  LEU   116      65.000  23.777   4.002  1.00 25.00           C
ATOM    117  CA  ALA   117      67.952  23.262   6.276  1.00 25.00           C
ATOM    118  CA  GLY   118      70.224  25.441   8.405  1.00 25.00           C
ATOM    119  CA  PRO   119      67.312  26.582  10.596  1.00 25.00           C
ATOM    120  CA  GLN   120      66.216  27.703  13.987  1.00 25.00           C
ATOM    121  CA  SER   121      63.176  29.292  15.574  1.00 25.00           C
ATOM    122  CA  ALA   122      59.410  29.524  15.806  1.00 25.00           C
ATOM    123  CA  PRO   123      57.330  26.569  14.518  1.00 25.00           C
ATOM    124  CA  PHE   124      54.266  24.340  14.359  1.00 25.00           C
ATOM    125  CA  GLY   125      53.186  25.506  17.816  1.00 25.00           C
ATOM    126  CA  HIS   126      49.556  25.344  18.741  1.00 25.00           C
ATOM    127  CA  THR   127      49.166  27.882  15.898  1.00 25.00           C
ATOM    128  CA  THR   128      49.218  25.045  13.327  1.00 25.00           C
ATOM    129  CA  VAL   129      46.549  23.155  15.319  1.00 25.00           C
ATOM    130  CA  CYS   130      44.383  26.309  15.457  1.00 25.00           C
ATOM    131  CA  ARG   131      44.763  26.765  11.675  1.00 25.00           C
ATOM    132  CA  LEU   132      43.756  23.114  11.108  1.00 25.00           C
ATOM    133  CA  ASN   133      40.685  23.588  13.347  1.00 25.00           C
ATOM    134  CA  HIS   134      39.717  26.737  11.394  1.00 25.00           C
ATOM    135  CA  LEU   135      40.083  24.832   8.091  1.00 25.00           C
ATOM    136  CA  VAL   136      37.883  22.006   9.449  1.00 25.00           C
ATOM    137  CA  GLU   137      35.239  24.555  10.537  1.00 25.00           C
ATOM    138  CA  GLN   138      35.316  26.157   7.060  1.00 25.00           C
ATOM    139  CA  GLN   139      34.892  22.713   5.438  1.00 25.00           C
ATOM    140  CA  GLU   140      31.212  23.464   5.429  1.00 25.00           C
ATOM    141  CA  GLY   141      28.737  26.174   4.439  1.00 25.00           C
ATOM    142  CA  ALA   142      29.760  29.820   4.106  1.00 25.00           C
ATOM    143  CA  GLN   143      29.072  33.569   3.960  1.00 25.00           C
ATOM    144  CA  ALA   144      31.028  35.569   1.466  1.00 25.00           C
ATOM    145  CA  PRO   145      31.717  35.882  -2.252  1.00 25.00           C
ATOM    146  CA  GLN   146      28.639  34.345  -3.964  1.00 25.00           C
ATOM    147  CA  TYR   147      30.660  32.599  -6.733  1.00 25.00           C
ATOM    148  CA  MET   148      33.604  34.998  -6.941  1.00 25.00           C
ATOM    149  CA  GLY   149      34.735  33.872 -10.390  1.00 25.00           C
ATOM    150  CA  ARG   150      37.840  32.255 -11.803  1.00 25.00           C
TER
END
