
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  150 (  150),  selected  147 , name T0364TS393_1-D1
# Molecule2: number of CA atoms  147 ( 1178),  selected  147 , name T0364_D1.pdb
# PARAMETERS: T0364TS393_1-D1.T0364_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   139         1 - 142         4.89     9.50
  LCS_AVERAGE:     90.71

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    27        18 - 44          1.88    10.87
  LCS_AVERAGE:     11.65

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    21        22 - 42          0.95    10.32
  LONGEST_CONTINUOUS_SEGMENT:    21        24 - 44          0.95    11.33
  LCS_AVERAGE:      6.20

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3    5  139     2    5   21   28   35   50   62   77   92  105  111  115  122  125  126  128  130  131  133  134 
LCS_GDT     P       2     P       2      3   11  139     3    9   20   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A       3     A       3      3   11  139     4   10   20   29   48   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L       4     L       4      4   11  139     3    7   20   30   49   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     I       5     I       5      4   11  139    10   17   18   26   39   58   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T       6     T       6      6   11  139     3    5   15   28   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Y       7     Y       7      6   11  139     3    9   20   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R       8     R       8      6   11  139     3    9   18   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T       9     T       9      6   11  139     3    7   15   31   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T      10     T      10      6   11  139     3    3    6   16   31   56   78   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V      11     V      11      6   11  139     4    5    9   16   34   56   78   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q      12     Q      12      4   11  139     4    5   22   32   46   64   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E      13     E      13      4    7  139     4    9   17   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      14     D      14      4    9  139     3    5    8   10   14   37   46   70   83  100  110  115  119  122  124  128  130  131  133  134 
LCS_GDT     W      15     W      15      4    9  139     4    5    8   15   22   41   72   91  100  108  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V      16     V      16      4    9  139     3    4   14   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      17     D      17      4    9  139     3    4    8   18   48   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Y      18     Y      18      4   27  139     3    6   18   30   43   58   79   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     N      19     N      19      4   27  139     3    5   20   25   34   53   62   87   99  107  113  117  122  125  126  128  130  131  133  134 
LCS_GDT     G      20     G      20      4   27  139     3    4    6    7   20   28   32   40   66   71   88  104  112  121  125  125  128  131  133  134 
LCS_GDT     H      21     H      21      4   27  139     3    5    8   24   34   53   70   89  102  109  113  117  122  125  126  128  130  131  133  134 
LCS_GDT     L      22     L      22     21   27  139     3   19   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R      23     R      23     21   27  139     3    4   14   24   41   60   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      24     D      24     21   27  139     9   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A      25     A      25     21   27  139    12   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     F      26     F      26     21   27  139    11   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Y      27     Y      27     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      28     L      28     21   27  139    12   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      29     L      29     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     I      30     I      30     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     F      31     F      31     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     S      32     S      32     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Y      33     Y      33     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A      34     A      34     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T      35     T      35     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      36     D      36     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A      37     A      37     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      38     L      38     21   27  139    15   20   26   36   50   64   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     M      39     M      39     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      40     D      40     21   27  139    15   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R      41     R      41     21   27  139    15   20   26   35   50   64   85   97  104  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     I      42     I      42     21   27  139    15   20   26   35   50   64   80   97  103  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     G      43     G      43     21   27  139     4    9   19   29   44   62   83   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      44     L      44     21   27  139     3    8   18   21   27   43   58   77   94  105  111  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      45     D      45      4   23  139     3    4    7   11   16   18   22   23   28   29   37   52   79  105  115  122  127  129  132  134 
LCS_GDT     A      46     A      46      4   15  139     3    3    4    7    7   16   18   23   37   42   49   67   93  106  116  121  127  130  132  134 
LCS_GDT     D      47     D      47      4   15  139     3    4    7   11   13   18   20   23   37   42   58   68   93  106  116  121  127  130  131  134 
LCS_GDT     S      48     S      48      4    6  139     4    4    5    5    7    8    8   37   48   73   89  103  108  120  126  128  130  131  133  134 
LCS_GDT     R      49     R      49      4    6  139     4    4    5    6    7    8   20   25   38   41   53   62   72   89  112  123  124  128  132  133 
LCS_GDT     G      50     G      50      4    6  139     4    4    5    5   12   20   27   51   69   84   97  105  117  125  126  128  130  131  133  134 
LCS_GDT     Q      51     Q      51      5    7  139     4    4    5   16   23   29   39   60   78  102  110  118  122  125  126  128  130  131  133  134 
LCS_GDT     S      52     S      52      5    7  139     4    4    5    6    8    9   12   32   40   45   51   59   64   83   98  112  120  126  132  134 
LCS_GDT     G      53     G      53      5    7  139     4    4    5    6    7    8   15   21   43   49   55   64   99  115  120  127  130  131  133  134 
LCS_GDT     N      54     N      54      5    7  139     4    4    9   16   29   40   65   92  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     S      55     S      55      7   16  139     4   10   24   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      56     L      56      7   16  139     4   10   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     F      57     F      57      7   16  139     4    9   20   29   50   66   85   97  104  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T      58     T      58      7   16  139     4   10   25   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      59     L      59      7   16  139     4   10   24   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E      60     E      60      7   16  139     3    8   14   32   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A      61     A      61      7   16  139     4    9   14   26   46   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H      62     H      62      6   16  139     3    5   14   21   37   61   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     I      63     I      63      6   16  139     3    9   20   29   46   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     N      64     N      64      6   16  139     3    5   20   29   45   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Y      65     Y      65      6   16  139     3    9   20   32   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      66     L      66      6   16  139     3    9   20   29   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H      67     H      67      6   16  139     4    9   20   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E      68     E      68      6   16  139     4   10   17   28   39   64   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V      69     V      69      6   16  139     4   10   17   29   39   64   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     K      70     K      70      6   16  139     4    7   15   26   35   46   59   82   99  107  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      71     L      71      6   14  139     3    6   12   18   23   37   46   58   69   89  110  113  118  122  125  128  130  131  133  134 
LCS_GDT     G      72     G      72      4   13  139     3    7   17   29   39   64   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T      73     T      73      4   10  139     4   11   15   28   39   54   77   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E      74     E      74      4   13  139     3    9   18   23   36   60   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V      75     V      75      4   13  139     0    5   12   18   35   60   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     W      76     W      76      4   13  139     3    5   15   29   49   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V      77     V      77      5   13  139     3    7   12   31   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q      78     Q      78      5   13  139     3    4   10   17   31   58   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T      79     T      79      5   14  139     3    4   12   19   38   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q      80     Q      80      5   14  139     3    4    9   16   29   49   76   91  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     I      81     I      81      5   14  139     2    6   20   36   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      82     L      82      3   14  139     0    4   11   18   41   64   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     G      83     G      83      3   14  139     4   10   20   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     F      84     F      84      4   14  139     1    7   18   36   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D      85     D      85      4   14  139     3    9   14   23   41   61   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R      86     R      86      4   14  139     3    4   13   26   41   55   78   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     K      87     K      87      4   14  139     3    4   13   23   41   54   75   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R      88     R      88      5   22  139     3   11   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      89     L      89      6   22  139     6   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H      90     H      90      6   22  139     4   19   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V      91     V      91      6   22  139     3   16   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Y      92     Y      92      6   22  139     4   10   20   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H      93     H      93      6   22  139     3    5   14   26   39   64   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     S      94     S      94      6   22  139     3    9   17   28   41   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L      95     L      95      5   22  139     3    9   15   29   45   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H      96     H      96      5   22  139     4    9   20   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R      97     R      97      5   22  139     4    9   15   29   39   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A      98     A      98      5   22  139     4    9   15   25   39   61   80   93  103  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     G      99     G      99      5   22  139     4    9   15   26   49   66   85   97  103  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     F     100     F     100      4   22  139     3    3    4   16   30   45   71   91  102  107  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D     101     D     101      4   22  139     3   16   25   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E     102     E     102      4   22  139     3    8   15   31   46   64   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V     103     V     103      4   22  139     3   20   26   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L     104     L     104      4   22  139     3    6   12   28   46   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A     105     A     105      4   22  139     0    5   12   20   38   53   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     A     106     A     106      4   22  139     3    9   21   37   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     S     107     S     107      4   22  139     1    5   17   29   44   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E     108     E     108      4   22  139     0    5   10   17   30   36   57   80   96  104  112  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q     109     Q     109      4   22  139     0    5   10   17   30   42   56   80   98  104  111  117  122  125  126  128  130  131  133  134 
LCS_GDT     M     110     M     110      4   10  139     2    3   10   15   21   28   37   44   70   84  101  109  114  121  125  128  130  131  133  134 
LCS_GDT     L     111     L     111      4    8  139     3    9   25   36   50   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L     112     L     112      5    8  139     4   15   25   32   48   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H     113     H     113      5    8  139     3   10   20   31   48   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V     114     V     114      5    7  139     3    8   20   29   41   61   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     D     115     D     115      5    7  139     0    4   20   29   41   61   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L     116     L     116      5    7  139     2    8   20   29   41   61   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q     120     Q     120      4    6  139     4    4    4    9   10   27   32   37   43   64   92  110  122  125  126  128  130  131  133  134 
LCS_GDT     S     121     S     121      4   20  139     4    4    5    9   10   27   32   37   45   64   92  116  122  125  126  128  130  131  133  134 
LCS_GDT     A     122     A     122     19   20  139     4    4   18   21   26   31   38   66   88  102  112  118  122  125  126  128  130  131  133  134 
LCS_GDT     P     123     P     123     19   20  139    10   17   18   23   26   48   62   92  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     F     124     F     124     19   20  139     3   17   18   23   38   55   78   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     G     125     G     125     19   20  139     3    7   18   26   41   61   84   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H     126     H     126     19   20  139    13   17   18   27   43   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T     127     T     127     19   20  139    13   17   18   27   43   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     T     128     T     128     19   20  139    13   17   18   28   43   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V     129     V     129     19   20  139    13   17   18   28   42   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     C     130     C     130     19   20  139    13   17   18   26   39   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     R     131     R     131     19   20  139    13   17   18   27   43   66   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L     132     L     132     19   20  139    13   17   18   28   39   64   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     N     133     N     133     19   20  139    13   17   18   24   38   59   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     H     134     H     134     19   20  139    13   17   18   24   38   62   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     L     135     L     135     19   20  139    13   17   18   24   39   62   85   97  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     V     136     V     136     19   20  139    13   17   18   23   33   48   73   96  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E     137     E     137     19   20  139    13   17   18   24   35   48   73   92  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q     138     Q     138     19   20  139    13   17   18   24   35   49   73   92  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     Q     139     Q     139     19   20  139     4   17   18   24   35   48   73   91  106  110  114  118  122  125  126  128  130  131  133  134 
LCS_GDT     E     140     E     140     19   20  139     3    5   18   21   30   42   58   82   94  107  112  117  122  124  125  128  130  131  133  134 
LCS_GDT     G     141     G     141      4   20  139     3    4    5    8   19   26   31   36   45   52   79   91  107  116  122  127  129  130  133  134 
LCS_GDT     A     142     A     142      4    7  139     3    4    5    7    9   12   14   16   18   25   35   40   44   53   65   74   98  105  118  122 
LCS_GDT     Q     143     Q     143      4    8   91     3    4    6    7    9   12   13   16   18   22   25   26   33   39   44   49   57   63   66   81 
LCS_GDT     A     144     A     144      4    8   27     3    4    6    6    9   12   12   16   18   22   25   26   26   26   26   38   42   44   48   52 
LCS_GDT     P     145     P     145      4    8   27     3    4    5    7    9   12   13   16   18   22   25   26   26   26   26   28   31   36   43   47 
LCS_GDT     Q     146     Q     146      4    8   27     3    4    6    6    9   11   13   16   18   22   25   26   26   26   26   28   37   41   44   47 
LCS_GDT     Y     147     Y     147      4    8   27     3    4    6    6    7    9   12   14   18   22   25   26   26   26   26   28   32   36   43   47 
LCS_GDT     M     148     M     148      4    8   27     3    4    6    7    9   12   12   16   18   22   25   26   26   26   26   26   27   27   27   29 
LCS_GDT     G     149     G     149      4    8   27     0    4    6    6    9   12   13   16   18   22   25   26   26   26   26   26   27   27   27   29 
LCS_GDT     R     150     R     150      0    8   27     0    2    3    4    8    9   13   15   18   19   25   26   26   26   26   26   27   27   27   30 
LCS_AVERAGE  LCS_A:  36.19  (   6.20   11.65   90.71 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     20     26     37     50     66     85     97    106    110    114    118    122    125    126    128    130    131    133    134 
GDT PERCENT_CA  10.20  13.61  17.69  25.17  34.01  44.90  57.82  65.99  72.11  74.83  77.55  80.27  82.99  85.03  85.71  87.07  88.44  89.12  90.48  91.16
GDT RMS_LOCAL    0.29   0.56   0.89   1.59   1.82   2.23   2.57   2.78   3.05   3.10   3.23   3.40   3.54   3.70   3.77   3.87   3.98   4.05   4.22   4.30
GDT RMS_ALL_CA  10.80  10.49  10.40  10.09  10.05   9.94   9.79   9.71   9.53   9.59   9.59   9.58   9.62   9.61   9.62   9.57   9.58   9.58   9.53   9.60

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.856
LGA    P       2      P       2          2.476
LGA    A       3      A       3          2.286
LGA    L       4      L       4          2.248
LGA    I       5      I       5          3.363
LGA    T       6      T       6          2.999
LGA    Y       7      Y       7          1.204
LGA    R       8      R       8          0.409
LGA    T       9      T       9          1.871
LGA    T      10      T      10          4.326
LGA    V      11      V      11          4.196
LGA    Q      12      Q      12          2.732
LGA    E      13      E      13          0.878
LGA    D      14      D      14          7.602
LGA    W      15      W      15          5.389
LGA    V      16      V      16          1.993
LGA    D      17      D      17          2.984
LGA    Y      18      Y      18          3.935
LGA    N      19      N      19          6.223
LGA    G      20      G      20          9.382
LGA    H      21      H      21          5.418
LGA    L      22      L      22          2.113
LGA    R      23      R      23          3.602
LGA    D      24      D      24          1.543
LGA    A      25      A      25          1.982
LGA    F      26      F      26          2.574
LGA    Y      27      Y      27          2.267
LGA    L      28      L      28          2.046
LGA    L      29      L      29          2.080
LGA    I      30      I      30          2.545
LGA    F      31      F      31          2.333
LGA    S      32      S      32          1.795
LGA    Y      33      Y      33          2.350
LGA    A      34      A      34          2.897
LGA    T      35      T      35          2.701
LGA    D      36      D      36          2.221
LGA    A      37      A      37          2.991
LGA    L      38      L      38          3.480
LGA    M      39      M      39          3.007
LGA    D      40      D      40          2.666
LGA    R      41      R      41          3.766
LGA    I      42      I      42          3.978
LGA    G      43      G      43          3.378
LGA    L      44      L      44          6.093
LGA    D      45      D      45         11.633
LGA    A      46      A      46         11.535
LGA    D      47      D      47         11.936
LGA    S      48      S      48          9.332
LGA    R      49      R      49         13.369
LGA    G      50      G      50          9.580
LGA    Q      51      Q      51          7.615
LGA    S      52      S      52         12.204
LGA    G      53      G      53          9.499
LGA    N      54      N      54          5.732
LGA    S      55      S      55          2.864
LGA    L      56      L      56          2.652
LGA    F      57      F      57          3.625
LGA    T      58      T      58          2.337
LGA    L      59      L      59          2.525
LGA    E      60      E      60          2.707
LGA    A      61      A      61          3.143
LGA    H      62      H      62          3.839
LGA    I      63      I      63          3.024
LGA    N      64      N      64          3.250
LGA    Y      65      Y      65          2.009
LGA    L      66      L      66          2.548
LGA    H      67      H      67          0.872
LGA    E      68      E      68          3.632
LGA    V      69      V      69          3.762
LGA    K      70      K      70          6.734
LGA    L      71      L      71          9.356
LGA    G      72      G      72          3.787
LGA    T      73      T      73          4.584
LGA    E      74      E      74          3.552
LGA    V      75      V      75          3.346
LGA    W      76      W      76          2.221
LGA    V      77      V      77          2.084
LGA    Q      78      Q      78          3.395
LGA    T      79      T      79          3.020
LGA    Q      80      Q      80          4.911
LGA    I      81      I      81          1.749
LGA    L      82      L      82          3.856
LGA    G      83      G      83          0.928
LGA    F      84      F      84          1.450
LGA    D      85      D      85          3.777
LGA    R      86      R      86          4.791
LGA    K      87      K      87          5.334
LGA    R      88      R      88          1.693
LGA    L      89      L      89          1.428
LGA    H      90      H      90          1.232
LGA    V      91      V      91          0.760
LGA    Y      92      Y      92          1.008
LGA    H      93      H      93          3.205
LGA    S      94      S      94          2.829
LGA    L      95      L      95          2.479
LGA    H      96      H      96          0.866
LGA    R      97      R      97          3.300
LGA    A      98      A      98          4.545
LGA    G      99      G      99          3.950
LGA    F     100      F     100          5.266
LGA    D     101      D     101          1.940
LGA    E     102      E     102          2.966
LGA    V     103      V     103          2.933
LGA    L     104      L     104          2.411
LGA    A     105      A     105          3.640
LGA    A     106      A     106          1.475
LGA    S     107      S     107          2.892
LGA    E     108      E     108          5.681
LGA    Q     109      Q     109          5.800
LGA    M     110      M     110          8.000
LGA    L     111      L     111          2.806
LGA    L     112      L     112          2.514
LGA    H     113      H     113          2.169
LGA    V     114      V     114          3.746
LGA    D     115      D     115          3.647
LGA    L     116      L     116          3.592
LGA    Q     120      Q     120          8.128
LGA    S     121      S     121          8.058
LGA    A     122      A     122          7.747
LGA    P     123      P     123          6.252
LGA    F     124      F     124          4.879
LGA    G     125      G     125          3.846
LGA    H     126      H     126          2.384
LGA    T     127      T     127          2.653
LGA    T     128      T     128          2.360
LGA    V     129      V     129          2.536
LGA    C     130      C     130          2.885
LGA    R     131      R     131          2.662
LGA    L     132      L     132          3.004
LGA    N     133      N     133          3.841
LGA    H     134      H     134          3.840
LGA    L     135      L     135          3.626
LGA    V     136      V     136          4.747
LGA    E     137      E     137          5.462
LGA    Q     138      Q     138          5.444
LGA    Q     139      Q     139          5.641
LGA    E     140      E     140          7.378
LGA    G     141      G     141         11.959
LGA    A     142      A     142         17.985
LGA    Q     143      Q     143         23.021
LGA    A     144      A     144         27.853
LGA    P     145      P     145         30.974
LGA    Q     146      Q     146         33.552
LGA    Y     147      Y     147         36.261
LGA    M     148      M     148         39.884
LGA    G     149      G     149         43.541
LGA    R     150      R     150         45.882

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  150  147    4.0     97    2.78    47.959    42.010     3.366

LGA_LOCAL      RMSD =  2.782  Number of atoms =   97  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  9.692  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  9.084  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.235395 * X  +   0.969134 * Y  +  -0.073276 * Z  +  45.048409
  Y_new =  -0.487655 * X  +  -0.052557 * Y  +   0.871453 * Z  +  11.534761
  Z_new =   0.840703 * X  +   0.240869 * Y  +   0.484974 * Z  +   5.639453 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.460974   -2.680618  [ DEG:    26.4119   -153.5881 ]
  Theta =  -0.998581   -2.143012  [ DEG:   -57.2145   -122.7855 ]
  Phi   =  -2.020515    1.121078  [ DEG:  -115.7670     64.2330 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0364TS393_1-D1                               
REMARK     2: T0364_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0364TS393_1-D1.T0364_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  150  147   4.0   97   2.78  42.010     9.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0364TS393_1-D1
PFRMAT TS
TARGET T0364
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      27.004   8.418  11.929  1.00 25.00           C
ATOM      2  CA  PRO     2      29.810  10.758  10.830  1.00 25.00           C
ATOM      3  CA  ALA     3      33.273  12.175  11.263  1.00 25.00           C
ATOM      4  CA  LEU     4      36.621  12.253   9.452  1.00 25.00           C
ATOM      5  CA  ILE     5      38.099  13.100   6.050  1.00 25.00           C
ATOM      6  CA  THR     6      37.736  10.512   3.352  1.00 25.00           C
ATOM      7  CA  TYR     7      40.150   9.013   0.759  1.00 25.00           C
ATOM      8  CA  ARG     8      39.368   6.595  -2.106  1.00 25.00           C
ATOM      9  CA  THR     9      41.209   3.316  -2.921  1.00 25.00           C
ATOM     10  CA  THR    10      43.621   1.981  -5.501  1.00 25.00           C
ATOM     11  CA  VAL    11      46.154  -0.927  -5.374  1.00 25.00           C
ATOM     12  CA  GLN    12      46.805  -3.723  -7.917  1.00 25.00           C
ATOM     13  CA  GLU    13      45.290  -6.173 -10.315  1.00 25.00           C
ATOM     14  CA  ASP    14      42.464  -8.131  -8.629  1.00 25.00           C
ATOM     15  CA  TRP    15      44.017  -7.462  -5.192  1.00 25.00           C
ATOM     16  CA  VAL    16      47.156  -9.366  -6.341  1.00 25.00           C
ATOM     17  CA  ASP    17      49.536 -12.212  -7.177  1.00 25.00           C
ATOM     18  CA  TYR    18      52.518 -14.563  -7.405  1.00 25.00           C
ATOM     19  CA  ASN    19      51.815 -16.232  -4.125  1.00 25.00           C
ATOM     20  CA  GLY    20      52.389 -14.153  -1.014  1.00 25.00           C
ATOM     21  CA  HIS    21      50.144 -11.058  -1.260  1.00 25.00           C
ATOM     22  CA  LEU    22      47.691  -8.210  -0.573  1.00 25.00           C
ATOM     23  CA  ARG    23      48.719  -8.905   3.084  1.00 25.00           C
ATOM     24  CA  ASP    24      51.476  -6.567   4.292  1.00 25.00           C
ATOM     25  CA  ALA    25      53.850  -4.261   2.365  1.00 25.00           C
ATOM     26  CA  PHE    26      51.191  -3.746  -0.342  1.00 25.00           C
ATOM     27  CA  TYR    27      48.587  -2.909   2.339  1.00 25.00           C
ATOM     28  CA  LEU    28      50.998  -0.393   3.929  1.00 25.00           C
ATOM     29  CA  LEU    29      51.611   1.218   0.509  1.00 25.00           C
ATOM     30  CA  ILE    30      47.835   1.464  -0.080  1.00 25.00           C
ATOM     31  CA  PHE    31      47.380   3.089   3.358  1.00 25.00           C
ATOM     32  CA  SER    32      50.161   5.601   2.567  1.00 25.00           C
ATOM     33  CA  TYR    33      48.497   6.425  -0.782  1.00 25.00           C
ATOM     34  CA  ALA    34      45.141   6.949   0.987  1.00 25.00           C
ATOM     35  CA  THR    35      46.817   9.264   3.535  1.00 25.00           C
ATOM     36  CA  ASP    36      48.438  11.257   0.695  1.00 25.00           C
ATOM     37  CA  ALA    37      45.045  11.571  -1.054  1.00 25.00           C
ATOM     38  CA  LEU    38      43.451  12.790   2.208  1.00 25.00           C
ATOM     39  CA  MET    39      46.244  15.375   2.637  1.00 25.00           C
ATOM     40  CA  ASP    40      45.716  16.580  -0.960  1.00 25.00           C
ATOM     41  CA  ARG    41      41.953  16.898  -0.326  1.00 25.00           C
ATOM     42  CA  ILE    42      42.634  18.905   2.865  1.00 25.00           C
ATOM     43  CA  GLY    43      46.071  20.504   3.210  1.00 25.00           C
ATOM     44  CA  LEU    44      46.654  18.693   6.479  1.00 25.00           C
ATOM     45  CA  ASP    45      48.233  17.696   9.810  1.00 25.00           C
ATOM     46  CA  ALA    46      51.049  20.147   9.158  1.00 25.00           C
ATOM     47  CA  ASP    47      53.787  20.528   6.508  1.00 25.00           C
ATOM     48  CA  SER    48      51.195  21.765   3.974  1.00 25.00           C
ATOM     49  CA  ARG    49      49.873  24.297   6.525  1.00 25.00           C
ATOM     50  CA  GLY    50      53.439  25.523   7.194  1.00 25.00           C
ATOM     51  CA  GLN    51      54.039  25.908   3.431  1.00 25.00           C
ATOM     52  CA  SER    52      57.757  25.479   4.195  1.00 25.00           C
ATOM     53  CA  GLY    53      58.172  23.273   1.065  1.00 25.00           C
ATOM     54  CA  ASN    54      57.915  20.274   3.449  1.00 25.00           C
ATOM     55  CA  SER    55      54.930  19.180   1.343  1.00 25.00           C
ATOM     56  CA  LEU    56      54.358  16.178   3.673  1.00 25.00           C
ATOM     57  CA  PHE    57      56.603  13.114   3.495  1.00 25.00           C
ATOM     58  CA  THR    58      56.167  10.315   6.045  1.00 25.00           C
ATOM     59  CA  LEU    59      58.416   9.480   8.960  1.00 25.00           C
ATOM     60  CA  GLU    60      56.123   8.541  11.793  1.00 25.00           C
ATOM     61  CA  ALA    61      52.717   6.946  11.318  1.00 25.00           C
ATOM     62  CA  HIS    62      50.199   4.293  12.234  1.00 25.00           C
ATOM     63  CA  ILE    63      49.956   1.541   9.562  1.00 25.00           C
ATOM     64  CA  ASN    64      49.067  -2.136  10.212  1.00 25.00           C
ATOM     65  CA  TYR    65      46.096  -3.953   8.682  1.00 25.00           C
ATOM     66  CA  LEU    66      43.528  -6.795   8.585  1.00 25.00           C
ATOM     67  CA  HIS    67      40.554  -8.154   6.628  1.00 25.00           C
ATOM     68  CA  GLU    68      39.237  -7.382   3.174  1.00 25.00           C
ATOM     69  CA  VAL    69      38.055  -5.206   0.221  1.00 25.00           C
ATOM     70  CA  LYS    70      34.705  -5.349  -1.562  1.00 25.00           C
ATOM     71  CA  LEU    71      32.633  -3.831  -4.373  1.00 25.00           C
ATOM     72  CA  GLY    72      35.836  -2.553  -6.097  1.00 25.00           C
ATOM     73  CA  THR    73      35.624   0.137  -3.407  1.00 25.00           C
ATOM     74  CA  GLU    74      37.377   0.068  -0.052  1.00 25.00           C
ATOM     75  CA  VAL    75      40.175   1.423   2.115  1.00 25.00           C
ATOM     76  CA  TRP    76      38.808   4.657   3.548  1.00 25.00           C
ATOM     77  CA  VAL    77      42.301   5.705   4.547  1.00 25.00           C
ATOM     78  CA  GLN    78      41.795   9.160   6.080  1.00 25.00           C
ATOM     79  CA  THR    79      43.702  11.791   8.002  1.00 25.00           C
ATOM     80  CA  GLN    80      42.148  15.166   9.021  1.00 25.00           C
ATOM     81  CA  ILE    81      43.594  15.339  12.521  1.00 25.00           C
ATOM     82  CA  LEU    82      45.434  16.492  15.691  1.00 25.00           C
ATOM     83  CA  GLY    83      48.315  15.983  18.184  1.00 25.00           C
ATOM     84  CA  PHE    84      49.611  19.387  17.200  1.00 25.00           C
ATOM     85  CA  ASP    85      50.590  20.143  20.826  1.00 25.00           C
ATOM     86  CA  ARG    86      54.269  20.318  20.018  1.00 25.00           C
ATOM     87  CA  LYS    87      54.773  17.485  17.558  1.00 25.00           C
ATOM     88  CA  ARG    88      53.094  17.227  14.135  1.00 25.00           C
ATOM     89  CA  LEU    89      50.629  14.530  12.966  1.00 25.00           C
ATOM     90  CA  HIS    90      49.172  11.731  15.137  1.00 25.00           C
ATOM     91  CA  VAL    91      47.187  10.991  11.974  1.00 25.00           C
ATOM     92  CA  TYR    92      44.432   8.484  12.826  1.00 25.00           C
ATOM     93  CA  HIS    93      41.337   7.509  10.733  1.00 25.00           C
ATOM     94  CA  SER    94      39.220   5.213   8.535  1.00 25.00           C
ATOM     95  CA  LEU    95      38.608   1.540   7.671  1.00 25.00           C
ATOM     96  CA  HIS    96      36.095   0.232   5.132  1.00 25.00           C
ATOM     97  CA  ARG    97      32.506  -1.025   5.191  1.00 25.00           C
ATOM     98  CA  ALA    98      28.937  -1.929   6.019  1.00 25.00           C
ATOM     99  CA  GLY    99      27.845  -5.379   7.039  1.00 25.00           C
ATOM    100  CA  PHE   100      28.443  -5.326  10.843  1.00 25.00           C
ATOM    101  CA  ASP   101      31.831  -3.767  10.352  1.00 25.00           C
ATOM    102  CA  GLU   102      35.170  -3.875   8.541  1.00 25.00           C
ATOM    103  CA  VAL   103      38.984  -3.837   8.716  1.00 25.00           C
ATOM    104  CA  LEU   104      41.459  -2.546   6.231  1.00 25.00           C
ATOM    105  CA  ALA   105      44.223   0.027   6.104  1.00 25.00           C
ATOM    106  CA  ALA   106      43.345   0.944   9.666  1.00 25.00           C
ATOM    107  CA  SER   107      45.596   4.034   9.363  1.00 25.00           C
ATOM    108  CA  GLU   108      47.542   7.203   8.622  1.00 25.00           C
ATOM    109  CA  GLN   109      50.393   9.141   7.013  1.00 25.00           C
ATOM    110  CA  MET   110      49.511  12.786   7.060  1.00 25.00           C
ATOM    111  CA  LEU   111      52.888  13.094   8.677  1.00 25.00           C
ATOM    112  CA  LEU   112      55.721  13.791  11.114  1.00 25.00           C
ATOM    113  CA  HIS   113      56.726  17.366  10.304  1.00 25.00           C
ATOM    114  CA  VAL   114      60.289  16.379   9.365  1.00 25.00           C
ATOM    115  CA  ASP   115      61.075  19.613   7.643  1.00 25.00           C
ATOM    116  CA  LEU   116      63.629  20.880   5.138  1.00 25.00           C
ATOM    117  CA  ALA   117      67.318  21.921   4.895  1.00 25.00           C
ATOM    118  CA  GLY   118      69.498  24.234   7.062  1.00 25.00           C
ATOM    119  CA  PRO   119      68.147  24.062  10.612  1.00 25.00           C
ATOM    120  CA  GLN   120      66.416  26.111  13.304  1.00 25.00           C
ATOM    121  CA  SER   121      63.189  26.724  15.164  1.00 25.00           C
ATOM    122  CA  ALA   122      60.229  25.591  17.251  1.00 25.00           C
ATOM    123  CA  PRO   123      56.570  26.260  18.041  1.00 25.00           C
ATOM    124  CA  PHE   124      53.811  24.968  15.787  1.00 25.00           C
ATOM    125  CA  GLY   125      53.019  28.146  13.871  1.00 25.00           C
ATOM    126  CA  HIS   126      51.208  31.305  12.628  1.00 25.00           C
ATOM    127  CA  THR   127      49.364  30.359   9.408  1.00 25.00           C
ATOM    128  CA  THR   128      49.387  26.673  10.449  1.00 25.00           C
ATOM    129  CA  VAL   129      48.000  27.611  13.893  1.00 25.00           C
ATOM    130  CA  CYS   130      45.234  29.682  12.241  1.00 25.00           C
ATOM    131  CA  ARG   131      44.358  26.736   9.957  1.00 25.00           C
ATOM    132  CA  LEU   132      44.205  24.399  12.987  1.00 25.00           C
ATOM    133  CA  ASN   133      41.910  26.869  14.805  1.00 25.00           C
ATOM    134  CA  HIS   134      39.636  27.059  11.729  1.00 25.00           C
ATOM    135  CA  LEU   135      39.497  23.236  11.564  1.00 25.00           C
ATOM    136  CA  VAL   136      38.594  23.084  15.284  1.00 25.00           C
ATOM    137  CA  GLU   137      35.823  25.672  14.742  1.00 25.00           C
ATOM    138  CA  GLN   138      34.465  23.636  11.796  1.00 25.00           C
ATOM    139  CA  GLN   139      34.483  20.467  13.947  1.00 25.00           C
ATOM    140  CA  GLU   140      32.321  22.451  16.365  1.00 25.00           C
ATOM    141  CA  GLY   141      29.324  24.421  15.065  1.00 25.00           C
ATOM    142  CA  ALA   142      27.464  26.969  12.975  1.00 25.00           C
ATOM    143  CA  GLN   143      23.975  26.674  11.419  1.00 25.00           C
ATOM    144  CA  ALA   144      24.214  28.882   8.332  1.00 25.00           C
ATOM    145  CA  PRO   145      26.400  30.106   5.482  1.00 25.00           C
ATOM    146  CA  GLN   146      25.408  27.274   3.246  1.00 25.00           C
ATOM    147  CA  TYR   147      25.850  26.376  -0.408  1.00 25.00           C
ATOM    148  CA  MET   148      25.383  30.021  -1.235  1.00 25.00           C
ATOM    149  CA  GLY   149      28.055  30.641  -3.958  1.00 25.00           C
ATOM    150  CA  ARG   150      31.090  32.140  -5.623  1.00 25.00           C
TER
END
