
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0367TS168_1-D1
# Molecule2: number of CA atoms  123 (  996),  selected  123 , name T0367_D1.pdb
# PARAMETERS: T0367TS168_1-D1.T0367_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        76 - 122         4.98    21.22
  LONGEST_CONTINUOUS_SEGMENT:    47        77 - 123         4.90    21.21
  LCS_AVERAGE:     31.66

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         1 - 25          1.37    34.10
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          1.72    34.16
  LONGEST_CONTINUOUS_SEGMENT:    25        25 - 49          1.83    26.45
  LONGEST_CONTINUOUS_SEGMENT:    25        98 - 122         1.60    23.39
  LONGEST_CONTINUOUS_SEGMENT:    25        99 - 123         1.63    23.62
  LCS_AVERAGE:     17.80

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    34.23
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.61    23.58
  LCS_AVERAGE:     15.19

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     M       1     M       1      3   25   30     3    3    3    4    5    9   12   15   20   25   25   25   27   27   27   38   39   39   43   43 
LCS_GDT     D       2     D       2     24   25   30     7   16   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     E       3     E       3     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     L       4     L       4     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   27   27   32   38   39   39   43   43 
LCS_GDT     E       5     E       5     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     L       6     L       6     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     R       7     R       7     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     I       8     I       8     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     R       9     R       9     24   25   30    14   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     K      10     K      10     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     A      11     A      11     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     E      12     E      12     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     K      13     K      13     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     L      14     L      14     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     V      15     V      15     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   39   43   43 
LCS_GDT     Q      16     Q      16     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   39   46   51   56 
LCS_GDT     D      17     D      17     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   42   48   51   56 
LCS_GDT     A      18     A      18     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   30   34   38   41   47   51   56 
LCS_GDT     K      19     K      19     24   25   30    16   22   24   24   24   24   24   24   24   25   25   26   29   33   35   39   47   48   52   56 
LCS_GDT     K      20     K      20     24   25   31    16   22   24   24   24   24   24   24   24   25   25   26   29   35   39   41   47   48   52   56 
LCS_GDT     E      21     E      21     24   25   31    16   22   24   24   24   24   24   24   24   25   25   26   32   36   41   42   47   48   52   56 
LCS_GDT     F      22     F      22     24   25   31    16   22   24   24   24   24   24   24   24   25   25   29   35   37   41   42   47   48   52   56 
LCS_GDT     E      23     E      23     24   25   31    16   22   24   24   24   24   24   27   29   32   33   34   36   38   41   42   47   48   52   56 
LCS_GDT     M      24     M      24     24   25   31    16   22   24   24   24   24   24   24   29   32   33   34   36   38   41   42   43   48   52   56 
LCS_GDT     G      25     G      25     24   25   31    16   22   24   24   24   24   24   27   29   32   33   34   36   38   41   42   43   43   46   50 
LCS_GDT     L      26     L      26     23   25   31    14   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   43   43   45   48 
LCS_GDT     Y      27     Y      27     23   25   31    22   23   23   23   24   25   25   27   29   31   33   34   36   38   41   42   43   48   52   56 
LCS_GDT     E      28     E      28     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   43   48   52   56 
LCS_GDT     R      29     R      29     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   43   43   45   48 
LCS_GDT     C      30     C      30     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   43   43   45   53 
LCS_GDT     C      31     C      31     23   25   31    22   23   23   23   25   26   27   27   29   32   33   34   36   38   41   42   48   52   58   62 
LCS_GDT     S      32     S      32     23   25   31    22   23   23   23   25   26   27   27   29   32   33   34   36   38   41   46   52   52   58   62 
LCS_GDT     T      33     T      33     23   25   31    22   23   23   23   24   26   27   27   29   32   33   34   36   38   41   42   43   43   45   48 
LCS_GDT     A      34     A      34     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   43   49   50   58 
LCS_GDT     Y      35     Y      35     23   25   31    22   23   23   23   24   25   25   27   29   32   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     Y      36     Y      36     23   25   31    22   23   23   23   24   25   25   27   29   32   33   37   43   45   46   48   52   56   60   63 
LCS_GDT     A      37     A      37     23   25   31    22   23   23   23   24   25   25   27   29   32   33   38   43   45   46   47   49   52   59   63 
LCS_GDT     M      38     M      38     23   25   31    22   23   23   23   24   25   25   27   29   32   33   38   43   45   46   47   50   56   60   63 
LCS_GDT     F      39     F      39     23   25   31    22   23   23   23   24   25   25   27   29   32   33   38   43   45   46   48   50   56   60   63 
LCS_GDT     H      40     H      40     23   25   31    22   23   23   23   24   25   25   27   29   32   33   38   43   45   46   47   50   56   60   63 
LCS_GDT     A      41     A      41     23   25   31    22   23   23   23   24   25   25   27   29   32   33   38   43   45   46   47   49   56   60   63 
LCS_GDT     A      42     A      42     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   40   44   47   48   56   60   63 
LCS_GDT     K      43     K      43     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   40   45   47   50   56   60   63 
LCS_GDT     A      44     A      44     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   41   44   47   50   56   60   63 
LCS_GDT     M      45     M      45     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   44   45   47   48   51   56 
LCS_GDT     L      46     L      46     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   43   43   46   50 
LCS_GDT     L      47     L      47     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   41   42   47   56   60   63 
LCS_GDT     G      48     G      48     23   25   31    22   23   23   23   24   25   25   27   29   32   33   34   36   38   44   45   47   48   51   56 
LCS_GDT     Y      49     Y      49      3   25   31     0    3    3    6   11   16   23   27   29   32   33   34   36   38   44   45   47   48   51   54 
LCS_GDT     G      50     G      50      4    9   31     3    4    5    7    9   12   13   17   24   26   29   31   36   38   44   46   47   52   60   63 
LCS_GDT     R      51     R      51      4    9   31     3    4    5    7    9   12   13   17   24   26   29   31   36   40   44   46   48   56   60   63 
LCS_GDT     D      52     D      52      4    9   30     3    4    4    7    9   12   13   17   24   26   30   32   36   40   44   47   49   56   60   63 
LCS_GDT     S      53     S      53      4    9   40     3    4    5    7    9   12   13   19   23   25   31   32   36   41   45   47   50   56   60   63 
LCS_GDT     K      54     K      54      5   16   41     3    4    7   11   13   14   19   22   26   28   33   38   43   45   46   47   50   56   60   63 
LCS_GDT     T      55     T      55     13   16   41     3    4    7   13   13   14   19   22   26   28   33   38   43   45   46   47   50   56   60   63 
LCS_GDT     H      56     H      56     13   16   41     3    8   12   13   13   14   18   21   22   26   33   38   43   45   46   47   50   56   60   63 
LCS_GDT     R      57     R      57     13   16   41    10   11   12   13   13   14   18   21   23   28   31   36   43   45   46   47   52   56   60   63 
LCS_GDT     G      58     G      58     13   16   41    10   11   12   13   13   14   19   22   26   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     T      59     T      59     13   16   41    10   11   12   13   13   14   19   24   27   30   33   38   43   45   46   47   50   56   60   63 
LCS_GDT     I      60     I      60     13   16   41    10   11   12   13   13   14   18   21   23   28   32   38   43   45   46   49   52   56   60   63 
LCS_GDT     Y      61     Y      61     13   16   41    10   11   12   13   13   16   20   23   28   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     L      62     L      62     13   16   41    10   11   12   13   13   14   19   23   28   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     I      63     I      63     13   16   41    10   11   12   13   13   14   21   24   27   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     W      64     W      64     13   16   41    10   11   12   13   13   16   20   23   28   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     E      65     E      65     13   16   41    10   11   12   13   13   16   20   23   28   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     C      66     C      66     13   16   41    10   11   12   13   13   14   17   24   28   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     R      67     R      67     13   16   41     9   11   12   13   13   16   20   23   28   30   33   36   43   45   46   49   52   56   60   63 
LCS_GDT     E      68     E      68      4   16   41     4    4    4    8   13   16   20   23   28   30   33   38   43   45   46   49   52   56   60   63 
LCS_GDT     E      69     E      69      4   22   41     4    4    7   10   13   16   20   23   28   30   33   36   43   45   46   49   52   56   60   63 
LCS_GDT     L      70     L      70      3   22   41     3    3    5   12   20   21   22   24   28   30   34   36   40   43   46   49   53   56   60   63 
LCS_GDT     G      71     G      71     19   22   41     3    7   18   19   21   21   22   24   27   30   33   38   43   45   46   49   53   56   60   63 
LCS_GDT     L      72     L      72     19   22   41     3   18   19   19   21   21   22   24   27   30   33   38   43   45   46   50   53   56   60   63 
LCS_GDT     S      73     S      73     19   22   41     7   18   19   19   21   21   22   24   27   30   33   41   44   46   48   50   53   56   60   63 
LCS_GDT     D      74     D      74     19   22   41     8   18   19   19   21   21   22   24   27   30   35   41   44   46   48   50   53   53   54   57 
LCS_GDT     D      75     D      75     19   22   41    11   18   19   19   21   21   22   24   27   30   31   34   42   44   47   50   52   53   54   56 
LCS_GDT     D      76     D      76     19   22   47    11   18   19   19   21   21   22   24   27   30   33   38   43   46   48   50   53   56   60   63 
LCS_GDT     C      77     C      77     19   22   47    11   18   19   19   21   21   22   24   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     S      78     S      78     19   22   47    11   18   19   19   21   21   22   24   27   30   35   41   44   46   48   50   53   53   54   56 
LCS_GDT     K      79     K      79     19   22   47     7   18   19   19   21   21   22   24   27   30   33   38   43   46   48   50   53   56   60   63 
LCS_GDT     L      80     L      80     19   22   47     9   18   19   19   21   21   22   24   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     S      81     S      81     19   22   47    11   18   19   19   21   21   22   24   28   34   36   41   44   46   48   50   53   53   54   57 
LCS_GDT     R      82     R      82     19   22   47    11   18   19   19   21   21   22   24   27   30   35   41   44   46   48   50   53   53   54   57 
LCS_GDT     A      83     A      83     19   22   47    11   18   19   19   21   21   22   24   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     F      84     F      84     19   22   47    11   18   19   19   21   21   22   24   28   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     D      85     D      85     19   22   47    11   18   19   19   21   21   22   24   27   30   33   38   42   46   48   50   53   53   54   57 
LCS_GDT     L      86     L      86     19   22   47    11   18   19   19   21   21   24   26   29   32   36   41   44   46   48   50   53   53   58   63 
LCS_GDT     R      87     R      87     19   22   47    11   18   19   20   24   25   25   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     E      88     E      88     19   22   47     9   18   19   19   21   25   25   27   29   32   33   37   42   44   48   50   53   53   54   57 
LCS_GDT     E      89     E      89     19   22   47     7   18   19   19   21   23   25   27   29   32   33   38   43   45   48   50   53   53   54   57 
LCS_GDT     S      90     S      90     19   22   47     2   10   19   19   21   21   22   24   28   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     D      91     D      91      3   22   47     3    6   13   14   16   20   22   24   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     Y      92     Y      92      3    6   47     3    3    5    8   11   15   20   24   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     G      93     G      93      3    6   47     3    3    8    8   12   15   20   23   29   34   36   41   44   46   48   50   53   54   60   63 
LCS_GDT     I      94     I      94      3    6   47     4    5    8    9   12   16   20   23   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     Y      95     Y      95      3    6   47     4    5    6    9   12   16   20   23   28   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     K      96     K      96      4    6   47     3    6    7    7   11   16   20   23   28   32   36   39   44   46   48   50   53   56   60   63 
LCS_GDT     E      97     E      97      4    6   47     3    3    4    5    6    8   10   20   21   26   32   36   40   43   48   50   53   55   60   63 
LCS_GDT     V      98     V      98      4   25   47     3    3    4    5    7    8   15   20   23   31   36   39   44   46   48   50   53   55   60   63 
LCS_GDT     S      99     S      99     24   25   47     3   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   58   62 
LCS_GDT     K     100     K     100     24   25   47    16   23   24   24   25   26   27   27   27   29   36   41   44   46   48   50   53   54   58   60 
LCS_GDT     D     101     D     101     24   25   47    15   23   24   24   25   26   27   27   29   34   36   39   44   46   48   50   53   56   60   63 
LCS_GDT     L     102     L     102     24   25   47    15   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     A     103     A     103     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     I     104     I     104     24   25   47    16   23   24   24   25   26   27   27   27   29   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     K     105     K     105     24   25   47    15   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     I     106     I     106     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     L     107     L     107     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     K     108     K     108     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     D     109     D     109     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     A     110     A     110     24   25   47    15   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     E     111     E     111     24   25   47    15   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   56   60   63 
LCS_GDT     I     112     I     112     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   60   63 
LCS_GDT     F     113     F     113     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   58   61 
LCS_GDT     V     114     V     114     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   58   62 
LCS_GDT     Q     115     Q     115     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   58   60 
LCS_GDT     K     116     K     116     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   56   58 
LCS_GDT     A     117     A     117     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   56   58 
LCS_GDT     K     118     K     118     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   56   58 
LCS_GDT     N     119     N     119     24   25   47    16   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   56   58 
LCS_GDT     A     120     A     120     24   25   47    16   23   24   24   25   26   27   27   28   34   36   41   44   46   48   50   53   54   55   58 
LCS_GDT     V     121     V     121     24   25   47    12   23   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   56   58 
LCS_GDT     N     122     N     122     24   25   47    12   21   24   24   25   26   27   27   29   34   36   41   44   46   48   50   53   54   56   58 
LCS_GDT     K     123     K     123      3   25   47     3    3    3    3    3    9   13   18   26   30   34   41   44   46   48   50   53   54   55   58 
LCS_AVERAGE  LCS_A:  21.55  (  15.19   17.80   31.66 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     23     24     24     25     26     27     27     29     34     36     41     44     46     48     50     53     56     60     63 
GDT PERCENT_CA  17.89  18.70  19.51  19.51  20.33  21.14  21.95  21.95  23.58  27.64  29.27  33.33  35.77  37.40  39.02  40.65  43.09  45.53  48.78  51.22
GDT RMS_LOCAL    0.29   0.34   0.61   0.61   0.88   1.04   1.26   1.26   2.41   3.65   3.81   4.38   4.56   4.74   4.90   5.07   5.49   6.84   6.98   7.24
GDT RMS_ALL_CA  26.88  26.85  23.58  23.58  23.53  23.36  23.51  23.51  26.26  21.18  21.07  21.25  21.21  21.18  21.23  21.15  20.85  22.45  22.25  22.57

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         63.247
LGA    D       2      D       2         56.965
LGA    E       3      E       3         51.446
LGA    L       4      L       4         46.857
LGA    E       5      E       5         49.155
LGA    L       6      L       6         48.299
LGA    R       7      R       7         41.901
LGA    I       8      I       8         40.084
LGA    R       9      R       9         42.755
LGA    K      10      K      10         39.249
LGA    A      11      A      11         33.600
LGA    E      12      E      12         35.311
LGA    K      13      K      13         35.880
LGA    L      14      L      14         30.614
LGA    V      15      V      15         28.066
LGA    Q      16      Q      16         30.767
LGA    D      17      D      17         28.409
LGA    A      18      A      18         23.623
LGA    K      19      K      19         24.968
LGA    K      20      K      20         25.535
LGA    E      21      E      21         21.590
LGA    F      22      F      22         20.347
LGA    E      23      E      23         22.829
LGA    M      24      M      24         20.556
LGA    G      25      G      25         18.688
LGA    L      26      L      26         16.635
LGA    Y      27      Y      27         10.404
LGA    E      28      E      28          7.758
LGA    R      29      R      29          9.091
LGA    C      30      C      30          7.992
LGA    C      31      C      31          2.891
LGA    S      32      S      32          3.153
LGA    T      33      T      33          3.577
LGA    A      34      A      34          9.112
LGA    Y      35      Y      35         10.199
LGA    Y      36      Y      36          8.270
LGA    A      37      A      37         12.589
LGA    M      38      M      38         17.914
LGA    F      39      F      39         17.786
LGA    H      40      H      40         16.898
LGA    A      41      A      41         23.145
LGA    A      42      A      42         26.855
LGA    K      43      K      43         25.476
LGA    A      44      A      44         27.273
LGA    M      45      M      45         33.887
LGA    L      46      L      46         35.373
LGA    L      47      L      47         33.502
LGA    G      48      G      48         38.155
LGA    Y      49      Y      49         40.086
LGA    G      50      G      50         38.881
LGA    R      51      R      51         36.518
LGA    D      52      D      52         35.105
LGA    S      53      S      53         30.977
LGA    K      54      K      54         26.678
LGA    T      55      T      55         23.780
LGA    H      56      H      56         18.584
LGA    R      57      R      57         18.205
LGA    G      58      G      58         20.794
LGA    T      59      T      59         17.953
LGA    I      60      I      60         15.893
LGA    Y      61      Y      61         19.300
LGA    L      62      L      62         19.463
LGA    I      63      I      63         16.137
LGA    W      64      W      64         18.079
LGA    E      65      E      65         20.810
LGA    C      66      C      66         18.316
LGA    R      67      R      67         17.398
LGA    E      68      E      68         23.137
LGA    E      69      E      69         20.865
LGA    L      70      L      70         17.259
LGA    G      71      G      71         24.025
LGA    L      72      L      72         23.234
LGA    S      73      S      73         25.858
LGA    D      74      D      74         25.359
LGA    D      75      D      75         26.630
LGA    D      76      D      76         21.346
LGA    C      77      C      77         17.458
LGA    S      78      S      78         21.001
LGA    K      79      K      79         18.582
LGA    L      80      L      80         12.841
LGA    S      81      S      81         15.871
LGA    R      82      R      82         18.522
LGA    A      83      A      83         12.684
LGA    F      84      F      84         12.311
LGA    D      85      D      85         18.439
LGA    L      86      L      86         16.383
LGA    R      87      R      87         12.491
LGA    E      88      E      88         18.505
LGA    E      89      E      89         21.085
LGA    S      90      S      90         18.090
LGA    D      91      D      91         19.198
LGA    Y      92      Y      92         21.683
LGA    G      93      G      93         23.064
LGA    I      94      I      94         22.373
LGA    Y      95      Y      95         20.257
LGA    K      96      K      96         15.275
LGA    E      97      E      97         11.336
LGA    V      98      V      98          8.372
LGA    S      99      S      99          1.359
LGA    K     100      K     100          0.497
LGA    D     101      D     101          1.193
LGA    L     102      L     102          1.430
LGA    A     103      A     103          0.738
LGA    I     104      I     104          0.215
LGA    K     105      K     105          0.866
LGA    I     106      I     106          0.740
LGA    L     107      L     107          0.458
LGA    K     108      K     108          0.201
LGA    D     109      D     109          0.360
LGA    A     110      A     110          0.903
LGA    E     111      E     111          0.879
LGA    I     112      I     112          0.388
LGA    F     113      F     113          0.364
LGA    V     114      V     114          0.124
LGA    Q     115      Q     115          0.287
LGA    K     116      K     116          0.293
LGA    A     117      A     117          0.159
LGA    K     118      K     118          0.178
LGA    N     119      N     119          0.280
LGA    A     120      A     120          0.290
LGA    V     121      V     121          0.843
LGA    N     122      N     122          0.959
LGA    K     123      K     123          7.887

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     27    1.26    25.203    23.299     1.986

LGA_LOCAL      RMSD =  1.259  Number of atoms =   27  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 23.514  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 17.458  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.570788 * X  +  -0.638474 * Y  +   0.516287 * Z  +  34.708282
  Y_new =  -0.733645 * X  +   0.114196 * Y  +  -0.669869 * Z  +  34.870785
  Z_new =   0.368735 * X  +  -0.761124 * Y  +  -0.533595 * Z  +  30.876465 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.182235    0.959358  [ DEG:  -125.0328     54.9672 ]
  Theta =  -0.377648   -2.763945  [ DEG:   -21.6376   -158.3624 ]
  Phi   =  -2.231988    0.909604  [ DEG:  -127.8835     52.1165 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS168_1-D1                               
REMARK     2: T0367_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS168_1-D1.T0367_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   27   1.26  23.299    17.46
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS168_1-D1
PFRMAT TS
TARGET T0367
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      33.610  62.808  -2.907  1.00 25.00           C
ATOM      2  CA  ASP     2      33.928  60.341  -0.107  1.00 25.00           C
ATOM      3  CA  GLU     3      35.100  56.739  -0.666  1.00 25.00           C
ATOM      4  CA  LEU     4      38.052  57.305   1.707  1.00 25.00           C
ATOM      5  CA  GLU     5      35.682  58.738   4.352  1.00 25.00           C
ATOM      6  CA  LEU     6      33.380  55.701   3.971  1.00 25.00           C
ATOM      7  CA  ARG     7      36.377  53.349   4.370  1.00 25.00           C
ATOM      8  CA  ILE     8      37.465  55.230   7.523  1.00 25.00           C
ATOM      9  CA  ARG     9      33.918  54.955   8.941  1.00 25.00           C
ATOM     10  CA  LYS    10      33.889  51.196   8.206  1.00 25.00           C
ATOM     11  CA  ALA    11      37.274  50.803   9.954  1.00 25.00           C
ATOM     12  CA  GLU    12      35.954  52.725  12.993  1.00 25.00           C
ATOM     13  CA  LYS    13      32.855  50.477  13.099  1.00 25.00           C
ATOM     14  CA  LEU    14      35.078  47.363  12.934  1.00 25.00           C
ATOM     15  CA  VAL    15      37.233  48.719  15.796  1.00 25.00           C
ATOM     16  CA  GLN    16      34.088  49.388  17.878  1.00 25.00           C
ATOM     17  CA  ASP    17      32.853  45.826  17.204  1.00 25.00           C
ATOM     18  CA  ALA    18      36.253  44.420  18.267  1.00 25.00           C
ATOM     19  CA  LYS    19      36.135  46.497  21.482  1.00 25.00           C
ATOM     20  CA  LYS    20      32.603  45.209  22.214  1.00 25.00           C
ATOM     21  CA  GLU    21      33.776  41.606  21.655  1.00 25.00           C
ATOM     22  CA  PHE    22      36.727  42.172  24.029  1.00 25.00           C
ATOM     23  CA  GLU    23      34.357  43.605  26.674  1.00 25.00           C
ATOM     24  CA  MET    24      32.056  40.568  26.293  1.00 25.00           C
ATOM     25  CA  GLY    25      35.052  38.216  26.691  1.00 25.00           C
ATOM     26  CA  LEU    26      36.140  40.097  29.845  1.00 25.00           C
ATOM     27  CA  TYR    27      32.594  39.822  31.262  1.00 25.00           C
ATOM     28  CA  GLU    28      32.564  36.063  30.527  1.00 25.00           C
ATOM     29  CA  ARG    29      35.949  35.671  32.276  1.00 25.00           C
ATOM     30  CA  CYS    30      34.630  37.592  35.314  1.00 25.00           C
ATOM     31  CA  CYS    31      31.531  35.345  35.421  1.00 25.00           C
ATOM     32  CA  SER    32      33.753  32.230  35.256  1.00 25.00           C
ATOM     33  CA  THR    33      35.908  33.586  38.118  1.00 25.00           C
ATOM     34  CA  ALA    34      32.764  34.256  40.200  1.00 25.00           C
ATOM     35  CA  TYR    35      31.529  30.694  39.526  1.00 25.00           C
ATOM     36  CA  TYR    36      34.929  29.288  40.588  1.00 25.00           C
ATOM     37  CA  ALA    37      34.810  31.365  43.804  1.00 25.00           C
ATOM     38  CA  MET    38      31.279  30.076  44.535  1.00 25.00           C
ATOM     39  CA  PHE    39      32.451  26.473  43.977  1.00 25.00           C
ATOM     40  CA  HIS    40      35.403  27.039  46.350  1.00 25.00           C
ATOM     41  CA  ALA    41      33.032  28.472  48.995  1.00 25.00           C
ATOM     42  CA  ALA    42      30.732  25.435  48.614  1.00 25.00           C
ATOM     43  CA  LYS    43      33.729  23.084  49.012  1.00 25.00           C
ATOM     44  CA  ALA    44      34.816  24.964  52.166  1.00 25.00           C
ATOM     45  CA  MET    45      31.268  24.689  53.583  1.00 25.00           C
ATOM     46  CA  LEU    46      31.240  20.931  52.848  1.00 25.00           C
ATOM     47  CA  LEU    47      34.624  20.538  54.597  1.00 25.00           C
ATOM     48  CA  GLY    48      33.305  22.459  57.635  1.00 25.00           C
ATOM     49  CA  TYR    49      33.770  26.206  57.344  1.00 25.00           C
ATOM     50  CA  GLY    50      32.687  29.467  55.780  1.00 25.00           C
ATOM     51  CA  ARG    51      31.056  32.257  53.709  1.00 25.00           C
ATOM     52  CA  ASP    52      28.661  35.247  54.186  1.00 25.00           C
ATOM     53  CA  SER    53      27.721  37.166  50.993  1.00 25.00           C
ATOM     54  CA  LYS    54      27.339  37.767  47.227  1.00 25.00           C
ATOM     55  CA  THR    55      26.299  40.146  44.475  1.00 25.00           C
ATOM     56  CA  HIS    56      28.151  41.054  41.271  1.00 25.00           C
ATOM     57  CA  ARG    57      31.312  43.011  42.189  1.00 25.00           C
ATOM     58  CA  GLY    58      32.818  39.540  42.781  1.00 25.00           C
ATOM     59  CA  THR    59      32.910  38.908  39.006  1.00 25.00           C
ATOM     60  CA  ILE    60      34.641  42.279  38.458  1.00 25.00           C
ATOM     61  CA  TYR    61      37.218  41.422  41.158  1.00 25.00           C
ATOM     62  CA  LEU    62      37.862  38.030  39.502  1.00 25.00           C
ATOM     63  CA  ILE    63      38.332  39.747  36.111  1.00 25.00           C
ATOM     64  CA  TRP    64      40.795  42.225  37.680  1.00 25.00           C
ATOM     65  CA  GLU    65      42.740  39.328  39.260  1.00 25.00           C
ATOM     66  CA  CYS    66      42.871  37.538  35.877  1.00 25.00           C
ATOM     67  CA  ARG    67      44.151  40.737  34.206  1.00 25.00           C
ATOM     68  CA  GLU    68      46.845  41.098  36.903  1.00 25.00           C
ATOM     69  CA  GLU    69      47.900  37.455  36.372  1.00 25.00           C
ATOM     70  CA  LEU    70      50.189  34.461  35.891  1.00 25.00           C
ATOM     71  CA  GLY    71      51.555  34.302  39.477  1.00 25.00           C
ATOM     72  CA  LEU    72      47.841  34.250  40.359  1.00 25.00           C
ATOM     73  CA  SER    73      48.133  30.479  39.992  1.00 25.00           C
ATOM     74  CA  ASP    74      47.480  27.412  37.922  1.00 25.00           C
ATOM     75  CA  ASP    75      44.701  26.276  40.301  1.00 25.00           C
ATOM     76  CA  ASP    76      42.874  29.603  39.794  1.00 25.00           C
ATOM     77  CA  CYS    77      43.172  29.217  35.996  1.00 25.00           C
ATOM     78  CA  SER    78      41.779  25.657  36.224  1.00 25.00           C
ATOM     79  CA  LYS    79      38.849  26.913  38.348  1.00 25.00           C
ATOM     80  CA  LEU    80      38.142  29.671  35.785  1.00 25.00           C
ATOM     81  CA  SER    81      38.201  27.090  32.956  1.00 25.00           C
ATOM     82  CA  ARG    82      35.770  24.862  34.904  1.00 25.00           C
ATOM     83  CA  ALA    83      33.439  27.849  35.460  1.00 25.00           C
ATOM     84  CA  PHE    84      33.563  28.673  31.722  1.00 25.00           C
ATOM     85  CA  ASP    85      32.734  25.033  30.867  1.00 25.00           C
ATOM     86  CA  LEU    86      29.782  25.107  33.306  1.00 25.00           C
ATOM     87  CA  ARG    87      28.519  28.355  31.717  1.00 25.00           C
ATOM     88  CA  GLU    88      28.793  26.786  28.234  1.00 25.00           C
ATOM     89  CA  GLU    89      26.844  23.716  29.435  1.00 25.00           C
ATOM     90  CA  SER    90      24.690  23.392  32.509  1.00 25.00           C
ATOM     91  CA  ASP    91      22.283  24.676  35.162  1.00 25.00           C
ATOM     92  CA  TYR    92      19.683  27.454  35.174  1.00 25.00           C
ATOM     93  CA  GLY    93      16.310  26.958  36.747  1.00 25.00           C
ATOM     94  CA  ILE    94      13.605  29.001  34.931  1.00 25.00           C
ATOM     95  CA  TYR    95      12.648  31.794  32.491  1.00 25.00           C
ATOM     96  CA  LYS    96      12.610  35.460  31.323  1.00 25.00           C
ATOM     97  CA  GLU    97      13.027  38.709  29.446  1.00 25.00           C
ATOM     98  CA  VAL    98      16.664  38.167  28.275  1.00 25.00           C
ATOM     99  CA  SER    99      20.343  37.791  29.292  1.00 25.00           C
ATOM    100  CA  LYS   100      21.332  34.206  28.824  1.00 25.00           C
ATOM    101  CA  ASP   101      22.151  33.880  25.096  1.00 25.00           C
ATOM    102  CA  LEU   102      25.001  36.409  25.476  1.00 25.00           C
ATOM    103  CA  ALA   103      26.367  34.457  28.474  1.00 25.00           C
ATOM    104  CA  ILE   104      26.217  31.205  26.456  1.00 25.00           C
ATOM    105  CA  LYS   105      28.078  32.887  23.562  1.00 25.00           C
ATOM    106  CA  ILE   106      30.757  34.154  25.988  1.00 25.00           C
ATOM    107  CA  LEU   107      31.140  30.632  27.442  1.00 25.00           C
ATOM    108  CA  LYS   108      31.503  29.187  23.915  1.00 25.00           C
ATOM    109  CA  ASP   109      34.169  31.811  23.088  1.00 25.00           C
ATOM    110  CA  ALA   110      36.055  30.944  26.307  1.00 25.00           C
ATOM    111  CA  GLU   111      35.909  27.221  25.418  1.00 25.00           C
ATOM    112  CA  ILE   112      37.249  27.981  21.911  1.00 25.00           C
ATOM    113  CA  PHE   113      40.103  30.039  23.420  1.00 25.00           C
ATOM    114  CA  VAL   114      40.947  27.164  25.806  1.00 25.00           C
ATOM    115  CA  GLN   115      40.974  24.704  22.871  1.00 25.00           C
ATOM    116  CA  LYS   116      43.295  27.033  20.908  1.00 25.00           C
ATOM    117  CA  ALA   117      45.638  27.284  23.927  1.00 25.00           C
ATOM    118  CA  LYS   118      45.677  23.467  24.245  1.00 25.00           C
ATOM    119  CA  ASN   119      46.496  23.142  20.518  1.00 25.00           C
ATOM    120  CA  ALA   120      49.347  25.670  20.898  1.00 25.00           C
ATOM    121  CA  VAL   121      50.713  23.718  23.896  1.00 25.00           C
ATOM    122  CA  ASN   122      50.563  20.466  21.878  1.00 25.00           C
ATOM    123  CA  LYS   123      53.578  21.770  19.876  1.00 25.00           C
TER
END
