
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0367TS168_3-D1
# Molecule2: number of CA atoms  123 (  996),  selected  123 , name T0367_D1.pdb
# PARAMETERS: T0367TS168_3-D1.T0367_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    48        76 - 123         4.89    22.14
  LCS_AVERAGE:     30.54

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         1 - 25          1.45    37.88
  LONGEST_CONTINUOUS_SEGMENT:    25         2 - 26          1.72    37.12
  LONGEST_CONTINUOUS_SEGMENT:    25        25 - 49          1.89    26.14
  LONGEST_CONTINUOUS_SEGMENT:    25        98 - 122         1.68    22.89
  LONGEST_CONTINUOUS_SEGMENT:    25        99 - 123         1.75    23.16
  LCS_AVERAGE:     17.45

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    37.60
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.81    23.27
  LCS_AVERAGE:     14.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     M       1     M       1      3   25   30     3    3    3    4    5    9   13   16   20   25   25   25   25   26   27   28   28   28   34   36 
LCS_GDT     D       2     D       2     24   25   30     7   17   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     E       3     E       3     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   33   36   37 
LCS_GDT     L       4     L       4     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     E       5     E       5     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     L       6     L       6     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     R       7     R       7     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     I       8     I       8     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     R       9     R       9     24   25   30    14   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     K      10     K      10     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     A      11     A      11     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     E      12     E      12     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     K      13     K      13     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     L      14     L      14     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     V      15     V      15     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   37 
LCS_GDT     Q      16     Q      16     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   38   44 
LCS_GDT     D      17     D      17     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   39 
LCS_GDT     A      18     A      18     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   31   31   33   35   36   39 
LCS_GDT     K      19     K      19     24   25   30    16   22   24   24   24   24   24   24   24   25   27   28   29   31   32   34   40   45   47   51 
LCS_GDT     K      20     K      20     24   25   31    16   22   24   24   24   24   24   24   24   25   27   28   29   31   32   36   38   45   47   50 
LCS_GDT     E      21     E      21     24   25   31    16   22   24   24   24   24   24   24   24   25   27   28   30   35   37   37   38   38   39   43 
LCS_GDT     F      22     F      22     24   25   31    16   22   24   24   24   24   24   24   24   25   27   28   31   35   37   37   38   45   47   50 
LCS_GDT     E      23     E      23     24   25   31    16   22   24   24   24   24   24   25   28   28   29   30   31   35   37   37   40   45   48   52 
LCS_GDT     M      24     M      24     24   25   33    16   22   24   24   24   24   24   24   24   27   29   29   31   35   37   37   38   38   40   44 
LCS_GDT     G      25     G      25     24   25   33    16   22   24   24   24   24   24   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     L      26     L      26     23   25   33    14   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     Y      27     Y      27     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     E      28     E      28     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   43 
LCS_GDT     R      29     R      29     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     C      30     C      30     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     C      31     C      31     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     S      32     S      32     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   43 
LCS_GDT     T      33     T      33     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     A      34     A      34     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     Y      35     Y      35     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   39   41   44 
LCS_GDT     Y      36     Y      36     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   40   42   44 
LCS_GDT     A      37     A      37     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     M      38     M      38     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     F      39     F      39     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     H      40     H      40     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   41   44   46 
LCS_GDT     A      41     A      41     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   40   42   44   46 
LCS_GDT     A      42     A      42     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     K      43     K      43     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     A      44     A      44     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     M      45     M      45     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   39   42   44   46 
LCS_GDT     L      46     L      46     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   42   44   46 
LCS_GDT     L      47     L      47     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   42   44   46 
LCS_GDT     G      48     G      48     23   25   33    22   23   23   23   23   24   25   26   28   28   29   30   31   35   37   37   38   42   43   46 
LCS_GDT     Y      49     Y      49      3   25   33     3    3    3    5    6   12   21   26   28   28   29   30   31   35   37   37   38   39   42   46 
LCS_GDT     G      50     G      50      4    7   33     3    4    4    5    6    8    9   13   16   20   24   28   31   35   37   37   38   39   42   46 
LCS_GDT     R      51     R      51      4    7   33     3    4    4    5    6    8    9   11   15   19   22   27   31   33   34   36   37   39   42   46 
LCS_GDT     D      52     D      52      4    7   33     3    4    4    5    6    8   11   14   17   22   26   27   31   33   34   36   36   39   42   46 
LCS_GDT     S      53     S      53      4    7   33     3    4    4    5    6    8    9   14   17   22   26   27   31   33   34   36   39   42   44   46 
LCS_GDT     K      54     K      54      4    7   33     3    3    4    5    6    8   11   14   18   22   26   27   31   33   35   37   40   42   44   46 
LCS_GDT     T      55     T      55      4   13   33     3    3    4    5    8   12   13   14   18   22   26   28   31   33   35   37   40   44   46   50 
LCS_GDT     H      56     H      56      4   13   33     3    3    4    5    6    9   13   13   16   21   26   28   31   33   35   37   40   44   46   50 
LCS_GDT     R      57     R      57     11   13   30    10   11   11   11   13   13   13   14   15   18   25   28   30   33   35   37   40   46   50   51 
LCS_GDT     G      58     G      58     11   13   28    10   11   11   11   13   13   13   15   18   20   25   28   30   33   35   37   40   46   50   51 
LCS_GDT     T      59     T      59     11   13   28    10   11   11   11   13   13   13   15   16   20   25   28   30   33   35   37   40   44   50   51 
LCS_GDT     I      60     I      60     11   13   28    10   11   11   11   13   13   13   15   18   19   23   28   30   33   35   37   43   46   50   51 
LCS_GDT     Y      61     Y      61     11   13   28    10   11   11   11   13   13   13   15   18   20   25   28   30   33   36   38   43   46   50   51 
LCS_GDT     L      62     L      62     11   13   28    10   11   11   11   13   13   13   15   18   20   25   28   30   33   35   38   43   46   50   51 
LCS_GDT     I      63     I      63     11   13   28    10   11   11   11   13   13   13   15   18   19   25   28   30   33   35   37   43   45   50   51 
LCS_GDT     W      64     W      64     11   13   28    10   11   11   11   13   13   13   15   18   20   25   28   30   33   36   38   43   46   50   51 
LCS_GDT     E      65     E      65     11   13   28    10   11   11   11   13   13   13   15   18   20   25   28   30   33   36   38   43   46   50   51 
LCS_GDT     C      66     C      66     11   13   28    10   11   11   11   13   13   13   15   16   19   25   28   30   32   34   35   40   43   50   51 
LCS_GDT     R      67     R      67     11   13   28     9   11   11   11   13   13   13   15   16   19   25   28   30   32   35   37   43   45   50   51 
LCS_GDT     E      68     E      68      4   13   28     4    4    4    9   13   13   13   15   18   20   25   28   30   33   35   38   43   45   50   51 
LCS_GDT     E      69     E      69      4   13   28     4    4    7    9   13   13   13   15   18   19   23   27   30   32   36   38   43   46   50   51 
LCS_GDT     L      70     L      70      3   22   28     3    3    6    7   10   12   13   16   23   23   25   34   38   41   45   48   50   53   53   54 
LCS_GDT     G      71     G      71      4   22   28     1    3    6    8   12   21   22   22   25   31   36   39   43   48   51   52   53   53   53   54 
LCS_GDT     L      72     L      72      4   22   28     4   17   17   18   19   21   22   22   24   28   33   39   44   48   51   52   53   53   53   54 
LCS_GDT     S      73     S      73     15   22   28     3    5    7   10   18   21   22   24   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     D      74     D      74     17   22   28     7   17   17   18   19   21   22   23   28   33   37   42   45   48   51   52   53   53   53   54 
LCS_GDT     D      75     D      75     17   22   28     7   17   17   18   19   21   22   22   23   24   31   33   40   43   49   52   53   53   53   54 
LCS_GDT     D      76     D      76     17   22   48    11   17   17   18   19   21   22   22   23   24   32   38   43   48   51   52   53   53   53   54 
LCS_GDT     C      77     C      77     17   22   48    11   17   17   18   19   21   24   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     S      78     S      78     17   22   48    11   17   17   18   19   24   25   25   28   33   36   42   45   48   51   52   53   53   53   54 
LCS_GDT     K      79     K      79     17   22   48     7   17   17   18   19   24   25   26   28   28   30   34   40   45   51   52   53   53   53   54 
LCS_GDT     L      80     L      80     17   22   48     9   17   17   18   19   21   22   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     S      81     S      81     17   22   48    11   17   17   18   19   21   25   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     R      82     R      82     17   22   48    11   17   17   18   19   21   22   24   28   33   36   42   45   48   51   52   53   53   53   54 
LCS_GDT     A      83     A      83     17   22   48    11   17   17   18   19   21   22   28   30   33   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     F      84     F      84     17   22   48    11   17   17   18   21   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     D      85     D      85     17   22   48    11   17   17   18   19   21   22   22   28   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     L      86     L      86     17   22   48    11   17   17   18   19   21   24   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     R      87     R      87     17   22   48    11   17   17   20   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     E      88     E      88     17   22   48    11   17   17   18   19   21   22   22   28   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     E      89     E      89     17   22   48     7   17   17   18   19   21   22   22   26   33   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     S      90     S      90     17   22   48     3    4   11   18   19   21   24   28   30   33   38   39   43   45   51   52   53   53   53   54 
LCS_GDT     D      91     D      91      4   22   48     3    5    8   16   21   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     Y      92     Y      92      3   22   48     3    4    4    8   18   20   22   22   28   34   37   42   45   48   51   52   53   53   53   54 
LCS_GDT     G      93     G      93      3    5   48     3    3    4    4    9   17   22   26   29   34   37   42   45   48   51   52   53   53   53   54 
LCS_GDT     I      94     I      94      3    6   48     3    4    4    5    6    9   17   26   29   34   37   42   45   48   51   52   53   53   53   54 
LCS_GDT     Y      95     Y      95      3    6   48     3    4    4    5    9   16   22   26   29   32   36   39   45   48   51   52   53   53   53   54 
LCS_GDT     K      96     K      96      4    6   48     3    4    4    5    7    8   18   24   29   32   34   39   40   45   51   52   53   53   53   54 
LCS_GDT     E      97     E      97      4    6   48     3    3    4    5    9   17   22   26   29   32   36   39   45   48   51   52   53   53   53   54 
LCS_GDT     V      98     V      98      4   25   48     3    3    4    5    7   13   17   25   29   32   35   39   41   47   51   52   53   53   53   54 
LCS_GDT     S      99     S      99     24   25   48     3    4   17   24   24   25   27   27   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     K     100     K     100     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     D     101     D     101     24   25   48    14   22   23   24   24   25   27   27   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     L     102     L     102     24   25   48    14   22   23   24   24   25   27   27   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     A     103     A     103     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     I     104     I     104     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     K     105     K     105     24   25   48    14   22   23   24   24   25   27   27   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     I     106     I     106     24   25   48    14   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     L     107     L     107     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     K     108     K     108     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     D     109     D     109     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     A     110     A     110     24   25   48    14   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     E     111     E     111     24   25   48    14   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     I     112     I     112     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     F     113     F     113     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     V     114     V     114     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     Q     115     Q     115     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     K     116     K     116     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     A     117     A     117     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     K     118     K     118     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     N     119     N     119     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     A     120     A     120     24   25   48    15   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     V     121     V     121     24   25   48    12   22   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     N     122     N     122     24   25   48    12   21   23   24   24   25   27   28   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_GDT     K     123     K     123      3   25   48     3    3    3    3    4   11   17   26   30   34   38   42   45   48   51   52   53   53   53   54 
LCS_AVERAGE  LCS_A:  20.82  (  14.48   17.45   30.54 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     23     24     24     24     25     27     28     30     34     38     42     45     48     51     52     53     53     53     54 
GDT PERCENT_CA  17.89  18.70  19.51  19.51  19.51  20.33  21.95  22.76  24.39  27.64  30.89  34.15  36.59  39.02  41.46  42.28  43.09  43.09  43.09  43.90
GDT RMS_LOCAL    0.29   0.34   0.70   0.70   0.70   1.45   1.99   2.60   2.67   3.37   3.60   4.15   4.44   4.78   4.98   5.08   5.21   5.21   5.21   5.38
GDT RMS_ALL_CA  26.25  26.25  37.60  37.60  37.60  22.76  22.49  22.77  22.81  22.49  22.60  22.38  22.24  22.00  21.97  21.97  21.94  21.94  21.94  21.86

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         57.646
LGA    D       2      D       2         56.537
LGA    E       3      E       3         56.626
LGA    L       4      L       4         52.789
LGA    E       5      E       5         47.770
LGA    L       6      L       6         48.288
LGA    R       7      R       7         47.769
LGA    I       8      I       8         42.059
LGA    R       9      R       9         39.422
LGA    K      10      K      10         41.642
LGA    A      11      A      11         38.158
LGA    E      12      E      12         32.502
LGA    K      13      K      13         33.673
LGA    L      14      L      14         34.741
LGA    V      15      V      15         28.635
LGA    Q      16      Q      16         26.067
LGA    D      17      D      17         30.396
LGA    A      18      A      18         27.755
LGA    K      19      K      19         21.767
LGA    K      20      K      20         24.849
LGA    E      21      E      21         27.788
LGA    F      22      F      22         21.913
LGA    E      23      E      23         20.768
LGA    M      24      M      24         26.924
LGA    G      25      G      25         25.350
LGA    L      26      L      26         22.159
LGA    Y      27      Y      27         18.834
LGA    E      28      E      28         22.264
LGA    R      29      R      29         22.918
LGA    C      30      C      30         17.292
LGA    C      31      C      31         16.236
LGA    S      32      S      32         20.775
LGA    T      33      T      33         20.685
LGA    A      34      A      34         16.162
LGA    Y      35      Y      35         17.276
LGA    Y      36      Y      36         22.477
LGA    A      37      A      37         21.497
LGA    M      38      M      38         18.336
LGA    F      39      F      39         21.790
LGA    H      40      H      40         26.393
LGA    A      41      A      41         24.513
LGA    A      42      A      42         22.725
LGA    K      43      K      43         27.953
LGA    A      44      A      44         31.094
LGA    M      45      M      45         28.631
LGA    L      46      L      46         29.025
LGA    L      47      L      47         34.939
LGA    G      48      G      48         36.369
LGA    Y      49      Y      49         34.257
LGA    G      50      G      50         34.314
LGA    R      51      R      51         31.216
LGA    D      52      D      52         32.273
LGA    S      53      S      53         30.635
LGA    K      54      K      54         30.131
LGA    T      55      T      55         24.214
LGA    H      56      H      56         21.417
LGA    R      57      R      57         20.275
LGA    G      58      G      58         20.113
LGA    T      59      T      59         18.470
LGA    I      60      I      60         17.701
LGA    Y      61      Y      61         17.943
LGA    L      62      L      62         17.476
LGA    I      63      I      63         16.305
LGA    W      64      W      64         16.273
LGA    E      65      E      65         16.335
LGA    C      66      C      66         15.780
LGA    R      67      R      67         14.691
LGA    E      68      E      68         14.848
LGA    E      69      E      69         13.835
LGA    L      70      L      70         11.917
LGA    G      71      G      71          9.855
LGA    L      72      L      72         10.112
LGA    S      73      S      73          7.228
LGA    D      74      D      74          8.443
LGA    D      75      D      75         11.891
LGA    D      76      D      76          9.556
LGA    C      77      C      77          3.842
LGA    S      78      S      78          7.372
LGA    K      79      K      79          8.596
LGA    L      80      L      80          4.091
LGA    S      81      S      81          2.928
LGA    R      82      R      82          5.825
LGA    A      83      A      83          3.972
LGA    F      84      F      84          2.967
LGA    D      85      D      85          5.467
LGA    L      86      L      86          3.650
LGA    R      87      R      87          2.628
LGA    E      88      E      88          6.731
LGA    E      89      E      89          6.283
LGA    S      90      S      90          3.003
LGA    D      91      D      91          3.390
LGA    Y      92      Y      92          9.977
LGA    G      93      G      93         11.622
LGA    I      94      I      94         12.561
LGA    Y      95      Y      95         14.191
LGA    K      96      K      96         14.670
LGA    E      97      E      97         11.366
LGA    V      98      V      98          9.987
LGA    S      99      S      99          6.670
LGA    K     100      K     100          1.831
LGA    D     101      D     101          5.632
LGA    L     102      L     102          6.117
LGA    A     103      A     103          2.660
LGA    I     104      I     104          2.702
LGA    K     105      K     105          5.273
LGA    I     106      I     106          3.945
LGA    L     107      L     107          0.477
LGA    K     108      K     108          3.047
LGA    D     109      D     109          3.665
LGA    A     110      A     110          2.029
LGA    E     111      E     111          1.961
LGA    I     112      I     112          2.877
LGA    F     113      F     113          2.273
LGA    V     114      V     114          1.414
LGA    Q     115      Q     115          1.965
LGA    K     116      K     116          2.028
LGA    A     117      A     117          1.776
LGA    K     118      K     118          2.054
LGA    N     119      N     119          1.956
LGA    A     120      A     120          1.674
LGA    V     121      V     121          2.017
LGA    N     122      N     122          1.970
LGA    K     123      K     123          6.736

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     28    2.60    25.813    23.386     1.036

LGA_LOCAL      RMSD =  2.604  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 22.720  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 17.850  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.813820 * X  +  -0.581111 * Y  +  -0.002643 * Z  +  32.009678
  Y_new =   0.422580 * X  +   0.594914 * Y  +  -0.683742 * Z  +  35.718128
  Z_new =   0.398902 * X  +   0.555326 * Y  +   0.729719 * Z  +  21.567209 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.650512   -2.491080  [ DEG:    37.2716   -142.7284 ]
  Theta =  -0.410319   -2.731273  [ DEG:   -23.5096   -156.4904 ]
  Phi   =   0.478933   -2.662660  [ DEG:    27.4408   -152.5592 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS168_3-D1                               
REMARK     2: T0367_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS168_3-D1.T0367_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   28   2.60  23.386    17.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS168_3-D1
PFRMAT TS
TARGET T0367
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      13.704   4.179  -1.080  1.00 25.00           C
ATOM      2  CA  ASP     2      15.533   7.370  -1.971  1.00 25.00           C
ATOM      3  CA  GLU     3      15.184  10.673  -3.877  1.00 25.00           C
ATOM      4  CA  LEU     4      12.966  12.075  -1.088  1.00 25.00           C
ATOM      5  CA  GLU     5      15.547  11.010   1.533  1.00 25.00           C
ATOM      6  CA  LEU     6      18.329  12.703  -0.482  1.00 25.00           C
ATOM      7  CA  ARG     7      16.243  15.906  -0.720  1.00 25.00           C
ATOM      8  CA  ILE     8      15.646  15.826   3.063  1.00 25.00           C
ATOM      9  CA  ARG     9      19.402  15.376   3.670  1.00 25.00           C
ATOM     10  CA  LYS    10      20.155  18.337   1.360  1.00 25.00           C
ATOM     11  CA  ALA    11      17.599  20.484   3.239  1.00 25.00           C
ATOM     12  CA  GLU    12      19.195  19.503   6.579  1.00 25.00           C
ATOM     13  CA  LYS    13      22.657  20.422   5.225  1.00 25.00           C
ATOM     14  CA  LEU    14      21.322  23.809   4.039  1.00 25.00           C
ATOM     15  CA  VAL    15      19.783  24.439   7.489  1.00 25.00           C
ATOM     16  CA  GLN    16      23.115  23.558   9.161  1.00 25.00           C
ATOM     17  CA  ASP    17      24.957  25.960   6.814  1.00 25.00           C
ATOM     18  CA  ALA    18      22.447  28.732   7.641  1.00 25.00           C
ATOM     19  CA  LYS    19      22.938  28.093  11.385  1.00 25.00           C
ATOM     20  CA  LYS    20      26.738  28.268  10.941  1.00 25.00           C
ATOM     21  CA  GLU    21      26.388  31.571   9.034  1.00 25.00           C
ATOM     22  CA  PHE    22      24.171  32.975  11.825  1.00 25.00           C
ATOM     23  CA  GLU    23      26.752  31.909  14.446  1.00 25.00           C
ATOM     24  CA  MET    24      29.533  33.601  12.429  1.00 25.00           C
ATOM     25  CA  GLY    25      27.448  36.804  12.193  1.00 25.00           C
ATOM     26  CA  LEU    26      26.851  36.724  15.975  1.00 25.00           C
ATOM     27  CA  TYR    27      30.605  36.275  16.583  1.00 25.00           C
ATOM     28  CA  GLU    28      31.359  39.235  14.273  1.00 25.00           C
ATOM     29  CA  ARG    29      28.804  41.383  16.151  1.00 25.00           C
ATOM     30  CA  CYS    30      30.398  40.401  19.492  1.00 25.00           C
ATOM     31  CA  CYS    31      33.861  41.320  18.137  1.00 25.00           C
ATOM     32  CA  SER    32      32.525  44.707  16.951  1.00 25.00           C
ATOM     33  CA  THR    33      30.988  45.337  20.401  1.00 25.00           C
ATOM     34  CA  ALA    34      34.319  44.457  22.073  1.00 25.00           C
ATOM     35  CA  TYR    35      36.160  46.858  19.726  1.00 25.00           C
ATOM     36  CA  TYR    36      33.651  49.630  20.554  1.00 25.00           C
ATOM     37  CA  ALA    37      34.142  48.991  24.297  1.00 25.00           C
ATOM     38  CA  MET    38      37.942  49.166  23.854  1.00 25.00           C
ATOM     39  CA  PHE    39      37.592  52.469  21.947  1.00 25.00           C
ATOM     40  CA  HIS    40      35.375  53.873  24.737  1.00 25.00           C
ATOM     41  CA  ALA    41      37.956  52.808  27.358  1.00 25.00           C
ATOM     42  CA  ALA    42      40.738  54.499  25.342  1.00 25.00           C
ATOM     43  CA  LYS    43      38.652  57.702  25.106  1.00 25.00           C
ATOM     44  CA  ALA    44      38.056  57.623  28.887  1.00 25.00           C
ATOM     45  CA  MET    45      41.810  57.173  29.494  1.00 25.00           C
ATOM     46  CA  LEU    46      42.563  60.133  27.185  1.00 25.00           C
ATOM     47  CA  LEU    47      40.008  62.281  29.064  1.00 25.00           C
ATOM     48  CA  GLY    48      41.604  61.299  32.405  1.00 25.00           C
ATOM     49  CA  TYR    49      38.959  58.838  33.671  1.00 25.00           C
ATOM     50  CA  GLY    50      35.787  56.834  34.271  1.00 25.00           C
ATOM     51  CA  ARG    51      32.715  54.538  34.090  1.00 25.00           C
ATOM     52  CA  ASP    52      29.188  55.267  35.360  1.00 25.00           C
ATOM     53  CA  SER    53      25.846  53.907  34.167  1.00 25.00           C
ATOM     54  CA  LYS    54      24.066  52.129  31.377  1.00 25.00           C
ATOM     55  CA  THR    55      25.966  49.860  29.046  1.00 25.00           C
ATOM     56  CA  HIS    56      25.141  46.756  27.005  1.00 25.00           C
ATOM     57  CA  ARG    57      25.453  42.980  27.359  1.00 25.00           C
ATOM     58  CA  GLY    58      29.161  43.753  27.925  1.00 25.00           C
ATOM     59  CA  THR    59      29.748  40.167  29.137  1.00 25.00           C
ATOM     60  CA  ILE    60      27.966  38.800  26.034  1.00 25.00           C
ATOM     61  CA  TYR    61      30.129  41.021  23.784  1.00 25.00           C
ATOM     62  CA  LEU    62      33.289  39.777  25.554  1.00 25.00           C
ATOM     63  CA  ILE    63      32.160  36.149  25.074  1.00 25.00           C
ATOM     64  CA  TRP    64      31.522  36.814  21.356  1.00 25.00           C
ATOM     65  CA  GLU    65      35.004  38.371  21.012  1.00 25.00           C
ATOM     66  CA  CYS    66      36.563  35.327  22.734  1.00 25.00           C
ATOM     67  CA  ARG    67      34.671  32.987  20.365  1.00 25.00           C
ATOM     68  CA  GLU    68      35.899  35.005  17.351  1.00 25.00           C
ATOM     69  CA  GLU    69      39.496  34.805  18.651  1.00 25.00           C
ATOM     70  CA  LEU    70      40.365  37.302  15.985  1.00 25.00           C
ATOM     71  CA  GLY    71      43.143  38.818  13.800  1.00 25.00           C
ATOM     72  CA  LEU    72      44.052  42.470  14.511  1.00 25.00           C
ATOM     73  CA  SER    73      46.817  40.785  16.589  1.00 25.00           C
ATOM     74  CA  ASP    74      48.116  43.376  19.009  1.00 25.00           C
ATOM     75  CA  ASP    75      45.697  46.119  20.147  1.00 25.00           C
ATOM     76  CA  ASP    76      42.717  43.988  19.032  1.00 25.00           C
ATOM     77  CA  CYS    77      44.111  40.986  20.957  1.00 25.00           C
ATOM     78  CA  SER    78      44.548  43.161  24.080  1.00 25.00           C
ATOM     79  CA  LYS    79      40.943  44.410  23.745  1.00 25.00           C
ATOM     80  CA  LEU    80      39.698  40.802  23.415  1.00 25.00           C
ATOM     81  CA  SER    81      41.677  39.808  26.540  1.00 25.00           C
ATOM     82  CA  ARG    82      40.176  42.761  28.461  1.00 25.00           C
ATOM     83  CA  ALA    83      36.659  41.732  27.345  1.00 25.00           C
ATOM     84  CA  PHE    84      37.323  38.137  28.487  1.00 25.00           C
ATOM     85  CA  ASP    85      38.550  39.417  31.882  1.00 25.00           C
ATOM     86  CA  LEU    86      35.401  41.568  32.236  1.00 25.00           C
ATOM     87  CA  ARG    87      33.209  38.543  31.395  1.00 25.00           C
ATOM     88  CA  GLU    88      35.060  36.443  34.009  1.00 25.00           C
ATOM     89  CA  GLU    89      34.551  39.199  36.619  1.00 25.00           C
ATOM     90  CA  SER    90      31.730  41.240  38.287  1.00 25.00           C
ATOM     91  CA  ASP    91      30.362  37.744  39.072  1.00 25.00           C
ATOM     92  CA  TYR    92      27.117  36.118  38.141  1.00 25.00           C
ATOM     93  CA  GLY    93      25.822  35.524  41.715  1.00 25.00           C
ATOM     94  CA  ILE    94      22.284  34.888  40.474  1.00 25.00           C
ATOM     95  CA  TYR    95      18.492  35.193  40.442  1.00 25.00           C
ATOM     96  CA  LYS    96      17.286  32.808  37.816  1.00 25.00           C
ATOM     97  CA  GLU    97      14.939  33.533  34.936  1.00 25.00           C
ATOM     98  CA  VAL    98      15.866  33.636  31.220  1.00 25.00           C
ATOM     99  CA  SER    99      17.068  33.267  27.611  1.00 25.00           C
ATOM    100  CA  LYS   100      20.389  32.422  29.389  1.00 25.00           C
ATOM    101  CA  ASP   101      20.765  29.601  26.825  1.00 25.00           C
ATOM    102  CA  LEU   102      22.582  31.980  24.436  1.00 25.00           C
ATOM    103  CA  ALA   103      24.929  33.064  27.261  1.00 25.00           C
ATOM    104  CA  ILE   104      25.651  29.398  28.101  1.00 25.00           C
ATOM    105  CA  LYS   105      26.406  28.677  24.416  1.00 25.00           C
ATOM    106  CA  ILE   106      28.776  31.684  24.289  1.00 25.00           C
ATOM    107  CA  LEU   107      30.551  30.450  27.451  1.00 25.00           C
ATOM    108  CA  LYS   108      30.919  26.962  25.913  1.00 25.00           C
ATOM    109  CA  ASP   109      32.369  28.497  22.718  1.00 25.00           C
ATOM    110  CA  ALA   110      34.852  30.542  24.798  1.00 25.00           C
ATOM    111  CA  GLU   111      35.893  27.387  26.702  1.00 25.00           C
ATOM    112  CA  ILE   112      36.402  25.527  23.394  1.00 25.00           C
ATOM    113  CA  PHE   113      38.538  28.418  22.070  1.00 25.00           C
ATOM    114  CA  VAL   114      40.640  28.364  25.272  1.00 25.00           C
ATOM    115  CA  GLN   115      41.127  24.582  24.915  1.00 25.00           C
ATOM    116  CA  LYS   116      42.210  25.040  21.271  1.00 25.00           C
ATOM    117  CA  ALA   117      44.699  27.752  22.325  1.00 25.00           C
ATOM    118  CA  LYS   118      46.107  25.442  25.036  1.00 25.00           C
ATOM    119  CA  ASN   119      46.482  22.622  22.473  1.00 25.00           C
ATOM    120  CA  ALA   120      48.299  25.001  20.084  1.00 25.00           C
ATOM    121  CA  VAL   121      50.646  26.086  22.909  1.00 25.00           C
ATOM    122  CA  ASN   122      51.367  22.419  23.749  1.00 25.00           C
ATOM    123  CA  LYS   123      52.744  21.005  20.487  1.00 25.00           C
TER
END
