
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  123 , name T0367TS393_2-D1
# Molecule2: number of CA atoms  123 (  996),  selected  123 , name T0367_D1.pdb
# PARAMETERS: T0367TS393_2-D1.T0367_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        86 - 123         4.97    21.33
  LCS_AVERAGE:     28.45

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         1 - 26          1.98    36.43
  LCS_AVERAGE:     17.48

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         2 - 25          0.70    36.99
  LONGEST_CONTINUOUS_SEGMENT:    24        99 - 122         0.82    23.21
  LCS_AVERAGE:     14.84

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  123
LCS_GDT     M       1     M       1      3   26   30     0    3    3    3    7   10   13   20   25   25   27   28   30   31   32   34   35   39   40   43 
LCS_GDT     D       2     D       2     24   26   30     7   16   20   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     E       3     E       3     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     L       4     L       4     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     E       5     E       5     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     L       6     L       6     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     R       7     R       7     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     I       8     I       8     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     R       9     R       9     24   26   30    14   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     K      10     K      10     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     A      11     A      11     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     E      12     E      12     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     K      13     K      13     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     L      14     L      14     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     V      15     V      15     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     Q      16     Q      16     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   39   44   47   50 
LCS_GDT     D      17     D      17     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     A      18     A      18     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   31   33   34   35   39   40   43 
LCS_GDT     K      19     K      19     24   26   30    16   22   23   24   24   24   24   25   25   26   27   28   30   32   35   43   43   48   50   53 
LCS_GDT     K      20     K      20     24   26   31    16   22   23   24   24   24   24   25   25   26   27   28   30   31   35   38   41   43   48   49 
LCS_GDT     E      21     E      21     24   26   31    16   22   23   24   24   24   24   25   25   26   27   28   30   31   34   36   38   40   43   47 
LCS_GDT     F      22     F      22     24   26   31    16   22   23   24   24   24   24   25   25   26   27   28   31   33   34   38   42   46   48   51 
LCS_GDT     E      23     E      23     24   26   31    16   22   23   24   24   24   24   26   28   29   29   30   32   33   36   38   41   46   48   51 
LCS_GDT     M      24     M      24     24   26   33    16   22   23   24   24   24   24   25   26   29   29   30   32   33   34   36   38   40   43   45 
LCS_GDT     G      25     G      25     24   26   33    16   22   23   24   24   24   24   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     L      26     L      26     23   26   33    17   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     Y      27     Y      27     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     E      28     E      28     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     R      29     R      29     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     C      30     C      30     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   47 
LCS_GDT     C      31     C      31     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     S      32     S      32     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     T      33     T      33     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   35   40   41   42   43   46 
LCS_GDT     A      34     A      34     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   34   37   40   41   44   46   47 
LCS_GDT     Y      35     Y      35     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   38   41   44   46   47 
LCS_GDT     Y      36     Y      36     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   36   38   43   44   45   46   47 
LCS_GDT     A      37     A      37     23   25   33    22   23   24   24   24   25   25   27   28   29   29   34   37   38   39   43   44   45   46   47 
LCS_GDT     M      38     M      38     23   25   33    22   23   24   24   24   25   25   27   28   29   29   34   37   38   39   43   44   45   46   47 
LCS_GDT     F      39     F      39     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   33   35   39   43   44   45   46   47 
LCS_GDT     H      40     H      40     23   25   33    22   23   24   24   24   25   25   27   28   29   29   34   37   38   39   43   44   45   46   47 
LCS_GDT     A      41     A      41     23   25   33    22   23   24   24   24   25   25   27   28   29   29   33   37   38   39   43   44   45   46   47 
LCS_GDT     A      42     A      42     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   40   45   46   47 
LCS_GDT     K      43     K      43     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   39   44   45   47 
LCS_GDT     A      44     A      44     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   42   45   46 
LCS_GDT     M      45     M      45     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   44 
LCS_GDT     L      46     L      46     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     L      47     L      47     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     G      48     G      48     23   25   33    22   23   24   24   24   25   25   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     Y      49     Y      49      3   25   33     3    3    3    5    8   15   22   27   28   29   29   31   32   33   34   36   38   40   43   45 
LCS_GDT     G      50     G      50      3    5   33     1    3    3    5    6    8   11   12   17   21   25   29   32   33   34   36   38   40   43   45 
LCS_GDT     R      51     R      51      3    5   33     3    3    3    5    6    8   11   12   14   17   21   26   31   33   33   36   38   40   43   45 
LCS_GDT     D      52     D      52      3    5   33     3    3    4    5    6    8   11   14   17   21   26   29   32   33   33   36   37   40   42   45 
LCS_GDT     S      53     S      53      3    5   33     3    3    3    4    5    8   10   14   17   21   26   29   32   33   33   36   37   38   42   44 
LCS_GDT     K      54     K      54      3    5   33     2    3    3    5    7    8   11   14   17   22   26   29   32   33   34   36   39   42   43   46 
LCS_GDT     T      55     T      55      3    5   33     1    3    3    5    7    9   13   17   22   23   29   30   32   35   36   38   42   46   48   50 
LCS_GDT     H      56     H      56      3   13   37     3    3    4    5    8   12   17   21   23   25   30   35   38   41   43   46   46   50   57   58 
LCS_GDT     R      57     R      57     11   13   37    10   11   11   11   13   17   19   21   23   25   30   36   40   41   45   47   48   55   57   58 
LCS_GDT     G      58     G      58     11   13   37    10   11   11   11   13   16   19   21   23   25   30   36   40   41   45   47   48   55   57   58 
LCS_GDT     T      59     T      59     11   13   37    10   11   11   11   13   14   19   21   23   27   30   36   40   41   45   47   48   55   57   58 
LCS_GDT     I      60     I      60     11   13   37    10   11   11   11   13   17   20   23   25   27   32   36   40   41   45   47   48   55   57   58 
LCS_GDT     Y      61     Y      61     11   13   37    10   11   11   11   13   17   19   21   25   27   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     L      62     L      62     11   13   37    10   11   11   11   13   17   19   21   25   27   32   36   40   41   45   47   48   55   57   58 
LCS_GDT     I      63     I      63     11   13   37    10   11   11   11   16   21   22   23   25   27   32   36   40   41   45   47   48   55   57   58 
LCS_GDT     W      64     W      64     11   13   37    10   11   11   11   13   17   19   21   25   27   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     E      65     E      65     11   13   37    10   11   11   11   13   17   19   21   25   27   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     C      66     C      66     11   13   37    10   11   11   11   14   19   22   23   25   27   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     R      67     R      67     11   13   37     9   11   11   11   13   17   19   21   25   27   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     E      68     E      68      4   13   37     4    4    4    8   13   13   16   17   22   27   32   35   40   41   45   47   50   55   57   58 
LCS_GDT     E      69     E      69      4   16   37     4    4    9   12   15   19   21   23   25   27   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     L      70     L      70      4   22   37     4    4    5   12   15   18   21   23   23   26   28   35   38   41   45   48   50   55   57   58 
LCS_GDT     G      71     G      71      4   22   37     4    4    5   12   16   20   21   23   25   26   29   34   37   39   43   48   50   55   57   58 
LCS_GDT     L      72     L      72     12   22   37     4    6   14   18   20   21   22   23   25   27   29   34   37   40   43   48   50   55   57   58 
LCS_GDT     S      73     S      73     19   22   37     4   10   18   19   20   21   22   23   25   27   29   34   37   40   43   48   50   52   54   55 
LCS_GDT     D      74     D      74     19   22   37    10   17   18   19   20   21   22   23   25   27   29   34   37   40   44   48   50   52   54   55 
LCS_GDT     D      75     D      75     19   22   37    10   17   24   24   24   25   25   27   28   29   29   32   37   38   39   43   47   52   54   54 
LCS_GDT     D      76     D      76     19   22   37    10   17   18   19   20   25   25   27   28   29   29   34   37   38   41   44   48   52   54   54 
LCS_GDT     C      77     C      77     19   22   37    10   17   18   19   20   21   22   23   25   27   29   34   37   40   44   48   50   55   57   58 
LCS_GDT     S      78     S      78     19   22   37     8   17   18   19   20   21   22   24   26   29   29   34   37   40   44   48   50   52   54   55 
LCS_GDT     K      79     K      79     19   22   37     8   17   18   19   20   21   22   23   26   29   29   34   37   38   39   44   49   52   54   54 
LCS_GDT     L      80     L      80     19   22   37     9   17   18   19   20   21   22   23   26   27   29   34   37   40   44   48   50   55   57   58 
LCS_GDT     S      81     S      81     19   22   37    10   17   18   19   20   21   23   28   29   30   31   34   37   40   44   48   50   55   57   58 
LCS_GDT     R      82     R      82     19   22   37    10   17   18   19   20   21   22   23   25   27   29   34   37   40   44   48   50   52   54   56 
LCS_GDT     A      83     A      83     19   22   37    10   17   18   19   20   21   22   23   25   27   31   34   37   40   44   48   50   55   57   58 
LCS_GDT     F      84     F      84     19   22   37    10   17   18   19   20   25   26   28   29   30   31   34   40   41   45   48   50   55   57   58 
LCS_GDT     D      85     D      85     19   22   37    10   17   18   19   20   21   22   23   25   27   29   34   37   40   44   48   50   52   55   56 
LCS_GDT     L      86     L      86     19   22   38    10   17   18   19   20   21   22   23   25   27   29   34   37   40   44   48   50   52   55   56 
LCS_GDT     R      87     R      87     19   22   38     9   17   18   19   20   25   26   28   29   30   31   34   40   41   45   48   50   55   57   58 
LCS_GDT     E      88     E      88     19   22   38     9   17   18   19   20   21   22   23   25   27   29   34   37   40   44   48   50   53   55   58 
LCS_GDT     E      89     E      89     19   22   38     8   17   18   19   20   21   22   23   25   27   29   34   37   38   39   43   49   52   54   56 
LCS_GDT     S      90     S      90     19   22   38     8   17   18   19   20   21   22   23   25   28   31   34   37   40   44   48   50   53   57   58 
LCS_GDT     D      91     D      91     19   22   38     1    5   18   19   20   21   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     Y      92     Y      92      3   21   38     3    3    5    6   12   16   19   22   25   27   29   34   38   41   45   48   50   55   57   58 
LCS_GDT     G      93     G      93      3    8   38     3    3    5    6    7    9   15   21   25   30   31   32   37   40   45   48   50   55   57   58 
LCS_GDT     I      94     I      94      3    8   38     3    3    5    6    7    9   12   14   19   22   30   31   36   40   44   48   50   55   57   58 
LCS_GDT     Y      95     Y      95      3    8   38     3    3    5    6    7    9   12   18   25   29   30   32   36   40   44   48   50   55   57   58 
LCS_GDT     K      96     K      96      4    8   38     3    4    5    6    7    9   12   20   25   29   30   33   38   41   45   48   50   55   57   58 
LCS_GDT     E      97     E      97      4    8   38     3    4    4    6   12   17   19   21   25   29   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     V      98     V      98      4    8   38     3    4    5    6    7    8   13   21   25   29   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     S      99     S      99     24   25   38     3    4   21   24   24   24   26   28   29   30   31   32   36   41   45   48   50   55   57   58 
LCS_GDT     K     100     K     100     24   25   38    14   22   23   24   24   25   26   28   29   30   31   32   36   40   44   48   50   55   57   58 
LCS_GDT     D     101     D     101     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     L     102     L     102     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     A     103     A     103     24   25   38    14   22   23   24   24   25   26   28   29   30   31   32   36   41   45   48   50   55   57   58 
LCS_GDT     I     104     I     104     24   25   38    14   22   23   24   24   25   26   28   29   30   31   36   40   41   45   48   50   55   57   58 
LCS_GDT     K     105     K     105     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     I     106     I     106     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     L     107     L     107     24   25   38    14   22   23   24   24   25   26   28   29   30   31   36   40   41   45   48   50   55   57   58 
LCS_GDT     K     108     K     108     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     D     109     D     109     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     A     110     A     110     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     E     111     E     111     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     I     112     I     112     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     F     113     F     113     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     V     114     V     114     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     Q     115     Q     115     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     K     116     K     116     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     A     117     A     117     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     K     118     K     118     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     N     119     N     119     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     A     120     A     120     24   25   38    14   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     V     121     V     121     24   25   38    12   22   23   24   24   25   26   28   29   30   32   36   40   41   45   48   50   55   57   58 
LCS_GDT     N     122     N     122     24   25   38    12   21   23   24   24   25   26   28   29   30   32   36   40   41   45   47   50   55   57   58 
LCS_GDT     K     123     K     123      3   25   38     0    3    3    3    4   10   16   27   29   30   31   35   40   41   45   48   50   55   57   58 
LCS_AVERAGE  LCS_A:  20.25  (  14.84   17.48   28.45 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     22     23     24     24     24     25     26     28     29     30     32     36     40     41     45     48     50     55     57     58 
GDT PERCENT_CA  17.89  18.70  19.51  19.51  19.51  20.33  21.14  22.76  23.58  24.39  26.02  29.27  32.52  33.33  36.59  39.02  40.65  44.72  46.34  47.15
GDT RMS_LOCAL    0.29   0.34   0.60   0.60   0.60   1.02   1.96   2.41   2.59   3.18   3.88   4.09   4.46   4.54   4.98   5.76   5.82   6.15   6.28   6.35
GDT RMS_ALL_CA  26.44  26.43  26.33  26.33  26.33  26.23  22.11  21.81  21.75  21.52  21.34  21.41  21.35  21.37  21.10  20.54  20.70  20.76  20.82  20.82

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         52.482
LGA    D       2      D       2         49.558
LGA    E       3      E       3         50.847
LGA    L       4      L       4         46.277
LGA    E       5      E       5         40.741
LGA    L       6      L       6         42.801
LGA    R       7      R       7         42.619
LGA    I       8      I       8         35.940
LGA    R       9      R       9         33.878
LGA    K      10      K      10         37.357
LGA    A      11      A      11         33.364
LGA    E      12      E      12         27.119
LGA    K      13      K      13         29.888
LGA    L      14      L      14         31.149
LGA    V      15      V      15         24.155
LGA    Q      16      Q      16         22.519
LGA    D      17      D      17         27.963
LGA    A      18      A      18         24.539
LGA    K      19      K      19         18.452
LGA    K      20      K      20         23.451
LGA    E      21      E      21         25.913
LGA    F      22      F      22         19.195
LGA    E      23      E      23         19.746
LGA    M      24      M      24         26.382
LGA    G      25      G      25         23.448
LGA    L      26      L      26         20.573
LGA    Y      27      Y      27         18.840
LGA    E      28      E      28         21.780
LGA    R      29      R      29         21.600
LGA    C      30      C      30         16.914
LGA    C      31      C      31         17.041
LGA    S      32      S      32         21.130
LGA    T      33      T      33         20.653
LGA    A      34      A      34         17.747
LGA    Y      35      Y      35         19.665
LGA    Y      36      Y      36         24.213
LGA    A      37      A      37         23.358
LGA    M      38      M      38         21.870
LGA    F      39      F      39         25.714
LGA    H      40      H      40         29.485
LGA    A      41      A      41         28.178
LGA    A      42      A      42         27.873
LGA    K      43      K      43         33.002
LGA    A      44      A      44         35.356
LGA    M      45      M      45         33.840
LGA    L      46      L      46         35.524
LGA    L      47      L      47         40.750
LGA    G      48      G      48         41.810
LGA    Y      49      Y      49         38.027
LGA    G      50      G      50         36.195
LGA    R      51      R      51         29.631
LGA    D      52      D      52         29.961
LGA    S      53      S      53         27.698
LGA    K      54      K      54         23.916
LGA    T      55      T      55         19.524
LGA    H      56      H      56         15.263
LGA    R      57      R      57         14.051
LGA    G      58      G      58         13.776
LGA    T      59      T      59         12.561
LGA    I      60      I      60         12.604
LGA    Y      61      Y      61         12.797
LGA    L      62      L      62         12.248
LGA    I      63      I      63         11.651
LGA    W      64      W      64         12.052
LGA    E      65      E      65         12.077
LGA    C      66      C      66         11.480
LGA    R      67      R      67         11.360
LGA    E      68      E      68         12.401
LGA    E      69      E      69         12.634
LGA    L      70      L      70         11.154
LGA    G      71      G      71         13.434
LGA    L      72      L      72         12.356
LGA    S      73      S      73         13.662
LGA    D      74      D      74         10.302
LGA    D      75      D      75         14.988
LGA    D      76      D      76         13.912
LGA    C      77      C      77          7.131
LGA    S      78      S      78          9.049
LGA    K      79      K      79         11.811
LGA    L      80      L      80          6.964
LGA    S      81      S      81          3.644
LGA    R      82      R      82          8.547
LGA    A      83      A      83          6.721
LGA    F      84      F      84          2.879
LGA    D      85      D      85          7.683
LGA    L      86      L      86          7.851
LGA    R      87      R      87          2.892
LGA    E      88      E      88          8.144
LGA    E      89      E      89         10.883
LGA    S      90      S      90          6.713
LGA    D      91      D      91          2.642
LGA    Y      92      Y      92          8.267
LGA    G      93      G      93          9.181
LGA    I      94      I      94         12.262
LGA    Y      95      Y      95         12.364
LGA    K      96      K      96         11.605
LGA    E      97      E      97          8.177
LGA    V      98      V      98          8.021
LGA    S      99      S      99          3.389
LGA    K     100      K     100          3.132
LGA    D     101      D     101          1.932
LGA    L     102      L     102          3.026
LGA    A     103      A     103          3.232
LGA    I     104      I     104          2.659
LGA    K     105      K     105          2.332
LGA    I     106      I     106          2.600
LGA    L     107      L     107          3.107
LGA    K     108      K     108          2.715
LGA    D     109      D     109          1.761
LGA    A     110      A     110          2.767
LGA    E     111      E     111          3.591
LGA    I     112      I     112          2.603
LGA    F     113      F     113          1.418
LGA    V     114      V     114          2.294
LGA    Q     115      Q     115          2.848
LGA    K     116      K     116          2.138
LGA    A     117      A     117          1.471
LGA    K     118      K     118          2.364
LGA    N     119      N     119          2.933
LGA    A     120      A     120          2.313
LGA    V     121      V     121          1.177
LGA    N     122      N     122          1.954
LGA    K     123      K     123          4.812

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  123    4.0     28    2.41    25.000    22.359     1.115

LGA_LOCAL      RMSD =  2.412  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 21.522  Number of atoms =  123 
Std_ALL_ATOMS  RMSD = 17.258  (standard rmsd on all 123 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.680860 * X  +   0.623536 * Y  +  -0.384229 * Z  +  33.561733
  Y_new =  -0.731712 * X  +   0.556128 * Y  +  -0.394106 * Z  +  36.173092
  Z_new =  -0.032059 * X  +   0.549476 * Y  +   0.834894 * Z  +  21.387455 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.582075   -2.559518  [ DEG:    33.3504   -146.6496 ]
  Theta =   0.032065    3.109528  [ DEG:     1.8372    178.1628 ]
  Phi   =  -0.821382    2.320211  [ DEG:   -47.0617    132.9383 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0367TS393_2-D1                               
REMARK     2: T0367_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0367TS393_2-D1.T0367_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  123   4.0   28   2.41  22.359    17.26
REMARK  ---------------------------------------------------------- 
MOLECULE T0367TS393_2-D1
PFRMAT TS
TARGET T0367
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      23.557   0.468  -0.870  1.00 25.00           C
ATOM      2  CA  ASP     2      24.012   2.400   2.420  1.00 25.00           C
ATOM      3  CA  GLU     3      21.799   5.130   0.896  1.00 25.00           C
ATOM      4  CA  LEU     4      20.185   5.762   4.312  1.00 25.00           C
ATOM      5  CA  GLU     5      23.647   6.019   5.929  1.00 25.00           C
ATOM      6  CA  LEU     6      24.748   8.505   3.231  1.00 25.00           C
ATOM      7  CA  ARG     7      21.592  10.591   3.831  1.00 25.00           C
ATOM      8  CA  ILE     8      22.277  10.588   7.598  1.00 25.00           C
ATOM      9  CA  ARG     9      25.884  11.710   6.970  1.00 25.00           C
ATOM     10  CA  LYS    10      24.636  14.531   4.699  1.00 25.00           C
ATOM     11  CA  ALA    11      22.152  15.637   7.396  1.00 25.00           C
ATOM     12  CA  GLU    12      24.952  15.639  10.009  1.00 25.00           C
ATOM     13  CA  LYS    13      27.153  17.740   7.684  1.00 25.00           C
ATOM     14  CA  LEU    14      24.279  20.214   7.158  1.00 25.00           C
ATOM     15  CA  VAL    15      23.765  20.461  10.945  1.00 25.00           C
ATOM     16  CA  GLN    16      27.508  21.107  11.436  1.00 25.00           C
ATOM     17  CA  ASP    17      27.411  23.844   8.757  1.00 25.00           C
ATOM     18  CA  ALA    18      24.392  25.453  10.476  1.00 25.00           C
ATOM     19  CA  LYS    19      26.227  25.365  13.837  1.00 25.00           C
ATOM     20  CA  LYS    20      29.298  26.993  12.229  1.00 25.00           C
ATOM     21  CA  GLU    21      27.086  29.723  10.707  1.00 25.00           C
ATOM     22  CA  PHE    22      25.472  30.355  14.122  1.00 25.00           C
ATOM     23  CA  GLU    23      28.934  30.613  15.738  1.00 25.00           C
ATOM     24  CA  MET    24      30.036  33.098  13.041  1.00 25.00           C
ATOM     25  CA  GLY    25      26.880  35.184  13.640  1.00 25.00           C
ATOM     26  CA  LEU    26      27.564  35.181  17.409  1.00 25.00           C
ATOM     27  CA  TYR    27      31.171  36.303  16.780  1.00 25.00           C
ATOM     28  CA  GLU    28      29.924  39.123  14.509  1.00 25.00           C
ATOM     29  CA  ARG    29      27.440  40.229  17.206  1.00 25.00           C
ATOM     30  CA  CYS    30      30.240  40.231  19.820  1.00 25.00           C
ATOM     31  CA  CYS    31      32.441  42.332  17.494  1.00 25.00           C
ATOM     32  CA  SER    32      29.567  44.807  16.967  1.00 25.00           C
ATOM     33  CA  THR    33      29.053  45.054  20.755  1.00 25.00           C
ATOM     34  CA  ALA    34      32.795  45.700  21.245  1.00 25.00           C
ATOM     35  CA  TYR    35      32.699  48.436  18.567  1.00 25.00           C
ATOM     36  CA  TYR    36      29.679  50.047  20.286  1.00 25.00           C
ATOM     37  CA  ALA    37      31.514  49.959  23.647  1.00 25.00           C
ATOM     38  CA  MET    38      34.586  51.585  22.040  1.00 25.00           C
ATOM     39  CA  PHE    39      32.374  54.316  20.516  1.00 25.00           C
ATOM     40  CA  HIS    40      30.760  54.948  23.932  1.00 25.00           C
ATOM     41  CA  ALA    41      34.222  55.205  25.548  1.00 25.00           C
ATOM     42  CA  ALA    42      35.323  57.692  22.850  1.00 25.00           C
ATOM     43  CA  LYS    43      32.167  59.777  23.451  1.00 25.00           C
ATOM     44  CA  ALA    44      32.852  59.773  27.218  1.00 25.00           C
ATOM     45  CA  MET    45      36.459  60.896  26.589  1.00 25.00           C
ATOM     46  CA  LEU    46      35.211  63.717  24.319  1.00 25.00           C
ATOM     47  CA  LEU    47      32.728  64.822  27.016  1.00 25.00           C
ATOM     48  CA  GLY    48      35.527  64.825  29.629  1.00 25.00           C
ATOM     49  CA  TYR    49      35.035  61.504  31.382  1.00 25.00           C
ATOM     50  CA  GLY    50      34.870  58.692  33.938  1.00 25.00           C
ATOM     51  CA  ARG    51      35.010  54.969  33.368  1.00 25.00           C
ATOM     52  CA  ASP    52      31.927  54.972  35.567  1.00 25.00           C
ATOM     53  CA  SER    53      28.791  52.874  35.680  1.00 25.00           C
ATOM     54  CA  LYS    54      30.242  50.968  32.681  1.00 25.00           C
ATOM     55  CA  THR    55      30.505  48.598  29.646  1.00 25.00           C
ATOM     56  CA  HIS    56      31.546  45.734  27.304  1.00 25.00           C
ATOM     57  CA  ARG    57      32.751  43.189  24.703  1.00 25.00           C
ATOM     58  CA  GLY    58      36.571  43.453  24.674  1.00 25.00           C
ATOM     59  CA  THR    59      36.854  39.661  24.220  1.00 25.00           C
ATOM     60  CA  ILE    60      34.358  39.797  21.318  1.00 25.00           C
ATOM     61  CA  TYR    61      36.365  42.626  19.694  1.00 25.00           C
ATOM     62  CA  LEU    62      39.586  40.590  20.072  1.00 25.00           C
ATOM     63  CA  ILE    63      37.884  37.552  18.477  1.00 25.00           C
ATOM     64  CA  TRP    64      36.677  39.727  15.566  1.00 25.00           C
ATOM     65  CA  GLU    65      40.221  41.093  15.084  1.00 25.00           C
ATOM     66  CA  CYS    66      41.621  37.528  15.075  1.00 25.00           C
ATOM     67  CA  ARG    67      39.012  36.484  12.472  1.00 25.00           C
ATOM     68  CA  GLU    68      39.941  39.496  10.297  1.00 25.00           C
ATOM     69  CA  GLU    69      43.651  38.578  10.567  1.00 25.00           C
ATOM     70  CA  LEU    70      45.752  39.938  13.404  1.00 25.00           C
ATOM     71  CA  GLY    71      46.831  43.161  11.684  1.00 25.00           C
ATOM     72  CA  LEU    72      44.353  44.734  14.141  1.00 25.00           C
ATOM     73  CA  SER    73      45.699  48.241  14.713  1.00 25.00           C
ATOM     74  CA  ASP    74      47.616  46.901  17.759  1.00 25.00           C
ATOM     75  CA  ASP    75      46.725  49.146  20.731  1.00 25.00           C
ATOM     76  CA  ASP    76      43.009  48.357  20.245  1.00 25.00           C
ATOM     77  CA  CYS    77      43.793  44.610  20.142  1.00 25.00           C
ATOM     78  CA  SER    78      45.839  44.924  23.364  1.00 25.00           C
ATOM     79  CA  LYS    79      42.947  46.787  25.048  1.00 25.00           C
ATOM     80  CA  LEU    80      40.507  44.049  23.941  1.00 25.00           C
ATOM     81  CA  SER    81      42.849  41.362  25.341  1.00 25.00           C
ATOM     82  CA  ARG    82      43.078  43.257  28.662  1.00 25.00           C
ATOM     83  CA  ALA    83      39.258  43.510  28.808  1.00 25.00           C
ATOM     84  CA  PHE    84      38.959  39.752  28.136  1.00 25.00           C
ATOM     85  CA  ASP    85      41.484  39.027  30.924  1.00 25.00           C
ATOM     86  CA  LEU    86      39.509  41.262  33.327  1.00 25.00           C
ATOM     87  CA  ARG    87      36.272  39.434  32.405  1.00 25.00           C
ATOM     88  CA  GLU    88      37.974  36.058  33.021  1.00 25.00           C
ATOM     89  CA  GLU    89      39.222  37.282  36.429  1.00 25.00           C
ATOM     90  CA  SER    90      36.135  39.226  37.556  1.00 25.00           C
ATOM     91  CA  ASP    91      32.448  38.459  38.073  1.00 25.00           C
ATOM     92  CA  TYR    92      29.275  37.711  36.205  1.00 25.00           C
ATOM     93  CA  GLY    93      27.754  37.107  39.598  1.00 25.00           C
ATOM     94  CA  ILE    94      24.828  34.676  39.693  1.00 25.00           C
ATOM     95  CA  TYR    95      21.389  36.243  40.139  1.00 25.00           C
ATOM     96  CA  LYS    96      18.697  35.576  37.606  1.00 25.00           C
ATOM     97  CA  GLU    97      16.865  36.113  34.267  1.00 25.00           C
ATOM     98  CA  VAL    98      17.033  35.749  30.458  1.00 25.00           C
ATOM     99  CA  SER    99      18.739  38.303  28.140  1.00 25.00           C
ATOM    100  CA  LYS   100      22.060  37.012  29.390  1.00 25.00           C
ATOM    101  CA  ASP   101      21.885  33.836  27.257  1.00 25.00           C
ATOM    102  CA  LEU   102      23.927  35.542  24.504  1.00 25.00           C
ATOM    103  CA  ALA   103      26.540  36.633  27.083  1.00 25.00           C
ATOM    104  CA  ILE   104      26.739  33.054  28.430  1.00 25.00           C
ATOM    105  CA  LYS   105      27.204  31.713  24.874  1.00 25.00           C
ATOM    106  CA  ILE   106      29.992  34.265  24.250  1.00 25.00           C
ATOM    107  CA  LEU   107      31.705  33.226  27.514  1.00 25.00           C
ATOM    108  CA  LYS   108      31.471  29.542  26.494  1.00 25.00           C
ATOM    109  CA  ASP   109      32.986  30.368  23.075  1.00 25.00           C
ATOM    110  CA  ALA   110      35.843  32.272  24.773  1.00 25.00           C
ATOM    111  CA  GLU   111      36.482  29.292  27.093  1.00 25.00           C
ATOM    112  CA  ILE   112      36.551  26.929  24.078  1.00 25.00           C
ATOM    113  CA  PHE   113      39.035  29.237  22.297  1.00 25.00           C
ATOM    114  CA  VAL   114      41.251  29.304  25.419  1.00 25.00           C
ATOM    115  CA  GLN   115      41.145  25.480  25.608  1.00 25.00           C
ATOM    116  CA  LYS   116      42.114  25.247  21.910  1.00 25.00           C
ATOM    117  CA  ALA   117      45.030  27.659  22.495  1.00 25.00           C
ATOM    118  CA  LYS   118      46.197  25.561  25.481  1.00 25.00           C
ATOM    119  CA  ASN   119      46.022  22.385  23.348  1.00 25.00           C
ATOM    120  CA  ALA   120      48.065  24.092  20.594  1.00 25.00           C
ATOM    121  CA  VAL   121      50.677  25.182  23.173  1.00 25.00           C
ATOM    122  CA  ASN   122      50.876  21.603  24.521  1.00 25.00           C
ATOM    123  CA  LYS   123      51.745  18.586  22.277  1.00 25.00           C
TER
END
